Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91897.t1 | XP_013451538.1 | 88.8 | 160 | 15 | 2 | 1 | 159 | 1 | 158 | 5.70E-67 | 263.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91897.t1 | Q9SRV3 | 59.1 | 164 | 53 | 2 | 1 | 152 | 1 | 162 | 5.4e-42 | 172.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91897.t1 | A0A072U858 | 88.8 | 160 | 15 | 2 | 1 | 159 | 1 | 158 | 4.1e-67 | 263.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91897.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91897.t1 | MTR_6g027710 | 85.000 | 160 | 21 | 2 | 1 | 159 | 1 | 158 | 1.84e-80 | 238 |
MS.gene91897.t1 | MTR_6g027700 | 64.348 | 115 | 38 | 2 | 36 | 149 | 4 | 116 | 3.06e-46 | 151 |
MS.gene91897.t1 | MTR_7g096530 | 65.714 | 105 | 34 | 1 | 38 | 142 | 13 | 115 | 6.13e-44 | 145 |
MS.gene91897.t1 | MTR_8g036085 | 66.346 | 104 | 33 | 1 | 39 | 142 | 23 | 124 | 6.98e-44 | 145 |
MS.gene91897.t1 | MTR_1g070220 | 64.078 | 103 | 35 | 1 | 39 | 141 | 15 | 115 | 2.16e-43 | 144 |
MS.gene91897.t1 | MTR_7g096610 | 65.385 | 104 | 34 | 1 | 38 | 141 | 7 | 108 | 3.10e-43 | 144 |
MS.gene91897.t1 | MTR_1g070205 | 63.107 | 103 | 36 | 1 | 39 | 141 | 12 | 112 | 7.23e-43 | 143 |
MS.gene91897.t1 | MTR_7g074990 | 60.577 | 104 | 39 | 1 | 39 | 142 | 20 | 121 | 4.76e-41 | 138 |
MS.gene91897.t1 | MTR_8g036105 | 63.462 | 104 | 36 | 1 | 39 | 142 | 18 | 119 | 8.21e-41 | 137 |
MS.gene91897.t1 | MTR_5g080470 | 54.955 | 111 | 48 | 1 | 38 | 148 | 6 | 114 | 1.53e-39 | 133 |
MS.gene91897.t1 | MTR_7g075230 | 61.321 | 106 | 37 | 3 | 39 | 142 | 12 | 115 | 6.08e-37 | 127 |
MS.gene91897.t1 | MTR_4g105170 | 52.252 | 111 | 50 | 2 | 38 | 148 | 10 | 117 | 1.26e-33 | 118 |
MS.gene91897.t1 | MTR_4g083680 | 49.091 | 110 | 53 | 2 | 38 | 147 | 14 | 120 | 4.58e-33 | 116 |
MS.gene91897.t1 | MTR_3g077240 | 50.435 | 115 | 52 | 3 | 38 | 152 | 9 | 118 | 1.35e-32 | 115 |
MS.gene91897.t1 | MTR_5g083960 | 40.789 | 152 | 87 | 2 | 1 | 152 | 1 | 149 | 1.40e-32 | 115 |
MS.gene91897.t1 | MTR_7g033800 | 52.830 | 106 | 47 | 2 | 38 | 143 | 10 | 112 | 2.26e-32 | 114 |
MS.gene91897.t1 | MTR_3g031660 | 49.057 | 106 | 51 | 2 | 38 | 143 | 6 | 108 | 3.36e-32 | 114 |
MS.gene91897.t1 | MTR_2g068760 | 43.802 | 121 | 65 | 2 | 27 | 147 | 1 | 118 | 4.09e-32 | 113 |
MS.gene91897.t1 | MTR_3g071590 | 50.000 | 106 | 50 | 2 | 38 | 143 | 7 | 109 | 7.11e-32 | 112 |
MS.gene91897.t1 | MTR_3g094690 | 45.522 | 134 | 70 | 2 | 17 | 150 | 25 | 155 | 7.47e-32 | 115 |
MS.gene91897.t1 | MTR_6g005070 | 50.943 | 106 | 49 | 2 | 38 | 143 | 8 | 110 | 1.53e-31 | 111 |
MS.gene91897.t1 | MTR_5g083230 | 44.800 | 125 | 64 | 3 | 38 | 162 | 5 | 124 | 3.28e-31 | 111 |
MS.gene91897.t1 | MTR_5g083010 | 49.524 | 105 | 50 | 2 | 38 | 142 | 10 | 111 | 9.44e-31 | 110 |
MS.gene91897.t1 | MTR_2g093310 | 41.322 | 121 | 68 | 2 | 36 | 156 | 30 | 147 | 1.74e-30 | 110 |
MS.gene91897.t1 | MTR_5g017950 | 52.381 | 105 | 47 | 2 | 38 | 142 | 7 | 108 | 2.46e-30 | 113 |
MS.gene91897.t1 | MTR_3g094690 | 45.522 | 134 | 69 | 3 | 17 | 150 | 25 | 154 | 3.74e-30 | 110 |
MS.gene91897.t1 | MTR_4g060950 | 39.865 | 148 | 82 | 5 | 36 | 181 | 21 | 163 | 7.20e-30 | 108 |
MS.gene91897.t1 | MTR_3g073690 | 50.476 | 105 | 49 | 2 | 38 | 142 | 8 | 109 | 7.23e-30 | 108 |
MS.gene91897.t1 | MTR_6g005080 | 49.057 | 106 | 51 | 2 | 38 | 143 | 9 | 111 | 1.05e-29 | 106 |
MS.gene91897.t1 | MTR_3g452660 | 45.378 | 119 | 62 | 2 | 38 | 156 | 6 | 121 | 8.17e-29 | 108 |
MS.gene91897.t1 | MTR_3g071420 | 48.000 | 100 | 49 | 2 | 38 | 137 | 13 | 109 | 1.48e-28 | 105 |
MS.gene91897.t1 | MTR_5g075020 | 45.588 | 136 | 69 | 3 | 37 | 172 | 41 | 171 | 3.98e-28 | 105 |
MS.gene91897.t1 | MTR_5g075020 | 45.588 | 136 | 69 | 3 | 37 | 172 | 45 | 175 | 6.67e-28 | 104 |
MS.gene91897.t1 | MTR_5g093010 | 42.373 | 118 | 65 | 2 | 36 | 153 | 2 | 116 | 4.84e-27 | 100 |
MS.gene91897.t1 | MTR_7g028905 | 41.964 | 112 | 62 | 2 | 36 | 147 | 2 | 110 | 3.02e-26 | 97.1 |
MS.gene91897.t1 | MTR_1g095850 | 42.373 | 118 | 63 | 3 | 40 | 156 | 73 | 186 | 8.24e-26 | 99.4 |
MS.gene91897.t1 | MTR_8g040900 | 57.143 | 84 | 33 | 2 | 38 | 121 | 6 | 86 | 1.09e-25 | 99.0 |
MS.gene91897.t1 | MTR_8g079660 | 43.925 | 107 | 57 | 2 | 36 | 142 | 5 | 108 | 3.09e-23 | 93.2 |
MS.gene91897.t1 | MTR_8g079620 | 38.182 | 110 | 65 | 2 | 33 | 142 | 2 | 108 | 1.91e-19 | 82.8 |
MS.gene91897.t1 | MTR_8g079580 | 36.364 | 154 | 87 | 6 | 34 | 182 | 3 | 150 | 7.01e-19 | 80.9 |
MS.gene91897.t1 | MTR_2g100020 | 37.864 | 103 | 61 | 3 | 40 | 142 | 20 | 119 | 8.20e-18 | 79.0 |
MS.gene91897.t1 | MTR_6g011230 | 35.922 | 103 | 63 | 2 | 40 | 142 | 12 | 111 | 7.74e-17 | 75.1 |
MS.gene91897.t1 | MTR_4g107450 | 38.835 | 103 | 60 | 2 | 40 | 142 | 11 | 110 | 2.30e-16 | 75.5 |
MS.gene91897.t1 | MTR_6g011250 | 39.785 | 93 | 51 | 3 | 40 | 132 | 10 | 97 | 3.13e-16 | 73.2 |
MS.gene91897.t1 | MTR_8g017090 | 35.922 | 103 | 63 | 2 | 40 | 142 | 13 | 112 | 1.68e-15 | 73.2 |
MS.gene91897.t1 | MTR_6g011200 | 38.202 | 89 | 50 | 3 | 36 | 121 | 3 | 89 | 1.09e-14 | 70.1 |
MS.gene91897.t1 | MTR_4g099230 | 41.463 | 82 | 46 | 2 | 40 | 121 | 3 | 82 | 1.21e-14 | 68.2 |
MS.gene91897.t1 | MTR_5g085390 | 33.636 | 110 | 68 | 3 | 36 | 142 | 3 | 110 | 5.86e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91897.t1 | AT3G03760 | 76.106 | 113 | 25 | 1 | 38 | 150 | 50 | 160 | 1.93e-58 | 184 |
MS.gene91897.t1 | AT2G42430 | 69.524 | 105 | 30 | 1 | 38 | 142 | 14 | 116 | 9.04e-46 | 151 |
MS.gene91897.t1 | AT3G58190 | 66.019 | 103 | 33 | 1 | 39 | 141 | 11 | 111 | 1.92e-43 | 144 |
MS.gene91897.t1 | AT5G06080 | 58.879 | 107 | 42 | 1 | 38 | 144 | 6 | 110 | 1.03e-41 | 138 |
MS.gene91897.t1 | AT2G45420 | 63.208 | 106 | 37 | 1 | 42 | 147 | 40 | 143 | 8.50e-41 | 139 |
MS.gene91897.t1 | AT4G00220 | 62.264 | 106 | 38 | 1 | 42 | 147 | 20 | 123 | 1.30e-40 | 137 |
MS.gene91897.t1 | AT2G31310 | 57.692 | 104 | 42 | 1 | 38 | 141 | 6 | 107 | 2.55e-40 | 135 |
MS.gene91897.t1 | AT2G42440 | 56.757 | 111 | 46 | 1 | 38 | 148 | 6 | 114 | 3.88e-40 | 136 |
MS.gene91897.t1 | AT4G00210 | 60.577 | 104 | 39 | 1 | 39 | 142 | 11 | 112 | 2.36e-39 | 134 |
MS.gene91897.t1 | AT2G45410 | 58.416 | 101 | 40 | 1 | 42 | 142 | 19 | 117 | 8.33e-35 | 121 |
MS.gene91897.t1 | AT3G27650 | 53.774 | 106 | 46 | 2 | 38 | 143 | 38 | 140 | 9.70e-34 | 117 |
MS.gene91897.t1 | AT1G16530 | 49.550 | 111 | 52 | 3 | 37 | 146 | 12 | 119 | 9.17e-33 | 115 |
MS.gene91897.t1 | AT5G63090 | 50.450 | 111 | 52 | 2 | 38 | 148 | 10 | 117 | 6.16e-31 | 111 |
MS.gene91897.t1 | AT5G63090 | 50.450 | 111 | 52 | 2 | 38 | 148 | 10 | 117 | 6.16e-31 | 111 |
MS.gene91897.t1 | AT5G63090 | 50.450 | 111 | 52 | 2 | 38 | 148 | 10 | 117 | 6.16e-31 | 111 |
MS.gene91897.t1 | AT5G63090 | 50.450 | 111 | 52 | 2 | 38 | 148 | 10 | 117 | 6.16e-31 | 111 |
MS.gene91897.t1 | AT2G30130 | 49.541 | 109 | 52 | 2 | 35 | 143 | 4 | 109 | 6.93e-31 | 111 |
MS.gene91897.t1 | AT1G07900 | 46.364 | 110 | 54 | 3 | 36 | 144 | 30 | 135 | 1.44e-30 | 110 |
MS.gene91897.t1 | AT5G66870 | 47.154 | 123 | 61 | 3 | 38 | 160 | 6 | 124 | 7.02e-30 | 111 |
MS.gene91897.t1 | AT2G28500 | 46.018 | 113 | 56 | 3 | 36 | 147 | 52 | 160 | 8.86e-30 | 109 |
MS.gene91897.t1 | AT2G30340 | 41.304 | 138 | 74 | 3 | 37 | 170 | 50 | 184 | 1.52e-29 | 109 |
MS.gene91897.t1 | AT1G31320 | 44.628 | 121 | 64 | 2 | 27 | 147 | 1 | 118 | 1.52e-29 | 107 |
MS.gene91897.t1 | AT2G30340 | 41.304 | 138 | 74 | 3 | 37 | 170 | 51 | 185 | 1.57e-29 | 109 |
MS.gene91897.t1 | AT3G11090 | 46.226 | 106 | 54 | 2 | 38 | 143 | 10 | 112 | 2.52e-29 | 106 |
MS.gene91897.t1 | AT1G65620 | 47.287 | 129 | 61 | 3 | 38 | 166 | 8 | 129 | 4.37e-28 | 104 |
MS.gene91897.t1 | AT1G65620 | 47.287 | 129 | 61 | 3 | 38 | 166 | 8 | 129 | 4.37e-28 | 104 |
MS.gene91897.t1 | AT1G65620 | 47.287 | 129 | 61 | 3 | 38 | 166 | 8 | 129 | 4.37e-28 | 104 |
MS.gene91897.t1 | AT1G65620 | 47.287 | 129 | 61 | 3 | 38 | 166 | 8 | 129 | 4.37e-28 | 104 |
MS.gene91897.t1 | AT1G65620 | 47.287 | 129 | 61 | 3 | 38 | 166 | 8 | 129 | 4.37e-28 | 104 |
MS.gene91897.t1 | AT2G23660 | 44.340 | 106 | 56 | 2 | 38 | 143 | 4 | 106 | 4.74e-27 | 104 |
MS.gene91897.t1 | AT2G23660 | 44.340 | 106 | 56 | 2 | 38 | 143 | 4 | 106 | 4.74e-27 | 104 |
MS.gene91897.t1 | AT2G23660 | 44.340 | 106 | 56 | 2 | 38 | 143 | 4 | 106 | 4.74e-27 | 104 |
MS.gene91897.t1 | AT2G40470 | 50.833 | 120 | 54 | 3 | 37 | 154 | 43 | 159 | 7.93e-27 | 101 |
MS.gene91897.t1 | AT2G40470 | 47.368 | 133 | 65 | 3 | 24 | 154 | 5 | 134 | 7.97e-27 | 101 |
MS.gene91897.t1 | AT3G26660 | 43.636 | 110 | 52 | 3 | 40 | 142 | 6 | 112 | 2.81e-26 | 97.4 |
MS.gene91897.t1 | AT3G26620 | 43.636 | 110 | 52 | 3 | 40 | 142 | 6 | 112 | 3.81e-26 | 97.1 |
MS.gene91897.t1 | AT3G50510 | 37.838 | 111 | 66 | 2 | 32 | 142 | 5 | 112 | 4.82e-21 | 85.9 |
MS.gene91897.t1 | AT3G50510 | 37.838 | 111 | 66 | 2 | 32 | 142 | 5 | 112 | 4.82e-21 | 85.9 |
MS.gene91897.t1 | AT1G72980 | 37.391 | 115 | 68 | 3 | 38 | 151 | 12 | 123 | 2.82e-17 | 76.6 |
MS.gene91897.t1 | AT3G13850 | 35.922 | 103 | 63 | 2 | 40 | 142 | 37 | 136 | 3.85e-16 | 74.3 |
MS.gene91897.t1 | AT5G35900 | 33.010 | 103 | 66 | 2 | 40 | 142 | 6 | 105 | 3.21e-14 | 68.2 |
MS.gene91897.t1 | AT1G06280 | 41.558 | 77 | 42 | 2 | 40 | 116 | 25 | 98 | 1.78e-12 | 63.5 |
MS.gene91897.t1 | AT3G47870 | 31.068 | 103 | 68 | 2 | 40 | 142 | 37 | 136 | 3.98e-12 | 63.9 |
Find 50 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTGAATCGGCGGCTGATA+TGG | 0.239472 | 5.3:-27888473 | None:intergenic |
AGGCTAGCTGATCCGGTTTA+TGG | 0.264632 | 5.3:+27888192 | MS.gene91897:CDS |
CCTTCTTGCTTTGCACCAAC+AGG | 0.348139 | 5.3:+27888227 | MS.gene91897:CDS |
TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 5.3:+27888027 | MS.gene91897:CDS |
TGAAGTTGTTCATGTTCATA+AGG | 0.399289 | 5.3:-27888541 | None:intergenic |
GGTGGCGATGGTAGTAGTTC+GGG | 0.401762 | 5.3:+27887883 | MS.gene91897:CDS |
ATTGAATCGGCGGCTGATAT+GGG | 0.405654 | 5.3:-27888472 | None:intergenic |
TAGCCTAGCTTGAGCCTCAT+AGG | 0.409914 | 5.3:-27888175 | None:intergenic |
ATGGTAGTAGTTCGGGAAAC+AGG | 0.412680 | 5.3:+27887890 | MS.gene91897:CDS |
GCGGCTGTGCACAAGGTGTT+TGG | 0.424834 | 5.3:+27888075 | MS.gene91897:CDS |
AAACTCAATTGATGAATAAG+AGG | 0.436075 | 5.3:+27888415 | MS.gene91897:CDS |
AGGTGGCGATGGTAGTAGTT+CGG | 0.442389 | 5.3:+27887882 | MS.gene91897:CDS |
TCAAGCTAGGCTAGCTGATC+CGG | 0.442761 | 5.3:+27888185 | MS.gene91897:CDS |
GTTGTTCATGTTCATAAGGT+TGG | 0.485083 | 5.3:-27888537 | None:intergenic |
TTGAGGAGGAAGTGTAGTAG+TGG | 0.488789 | 5.3:+27888003 | MS.gene91897:CDS |
GCACCACACGGAGATATAAT+CGG | 0.498285 | 5.3:-27887970 | None:intergenic |
TGATCATGGCGATGGTTAGC+GGG | 0.498289 | 5.3:-27888132 | None:intergenic |
GGTGGAAGCAGATGAGTTGT+TGG | 0.513070 | 5.3:-27888513 | None:intergenic |
CCTGTTGGTGCAAAGCAAGA+AGG | 0.520787 | 5.3:-27888227 | None:intergenic |
GTGGACACACAACCATAAAC+CGG | 0.521396 | 5.3:-27888204 | None:intergenic |
TCGCCGCAGCTTCATGATCA+TGG | 0.528350 | 5.3:-27888146 | None:intergenic |
GCTGGCTGCACAAATTGAAT+CGG | 0.529295 | 5.3:-27888485 | None:intergenic |
AAATGCTGCAAAGCGTGCAA+TGG | 0.533586 | 5.3:+27887927 | MS.gene91897:CDS |
CCAAGGTGCAGCTAAGTTTG+CGG | 0.534415 | 5.3:+27888056 | MS.gene91897:CDS |
ATGATCATGGCGATGGTTAG+CGG | 0.537821 | 5.3:-27888133 | None:intergenic |
GTTCATGTTCATAAGGTTGG+TGG | 0.542354 | 5.3:-27888534 | None:intergenic |
ACCTTGGTCAGTACCAAAGT+AGG | 0.564783 | 5.3:-27888040 | None:intergenic |
CTGTTGGTGCAAAGCAAGAA+GGG | 0.566308 | 5.3:-27888226 | None:intergenic |
GCTGAGTCACAAGGTGGCGA+TGG | 0.567129 | 5.3:+27887871 | MS.gene91897:CDS |
CATGTTCATAAGGTTGGTGG+TGG | 0.580499 | 5.3:-27888531 | None:intergenic |
TAAGTTTGCGGCTGTGCACA+AGG | 0.581391 | 5.3:+27888068 | MS.gene91897:CDS |
TTTCCTATGAGGCTCAAGCT+AGG | 0.592261 | 5.3:+27888172 | MS.gene91897:CDS |
CAGCTTCATGATCATGGCGA+TGG | 0.592782 | 5.3:-27888140 | None:intergenic |
CCTTGGTCAGTACCAAAGTA+GGG | 0.597516 | 5.3:-27888039 | None:intergenic |
TGCGGCGACTATTTCCTATG+AGG | 0.598387 | 5.3:+27888161 | MS.gene91897:CDS |
CCGCAAACTTAGCTGCACCT+TGG | 0.601831 | 5.3:-27888056 | None:intergenic |
TTGAATCGGCGGCTGATATG+GGG | 0.604833 | 5.3:-27888471 | None:intergenic |
GATGAGTTGTTGGAATATGC+TGG | 0.605347 | 5.3:-27888503 | None:intergenic |
GCGATGGTTAGCGGGAACGT+TGG | 0.611754 | 5.3:-27888124 | None:intergenic |
CCCTACTTTGGTACTGACCA+AGG | 0.613176 | 5.3:+27888039 | MS.gene91897:CDS |
GGCTGCACAAATTGAATCGG+CGG | 0.620337 | 5.3:-27888482 | None:intergenic |
GTGGTGCTTGCAAGTTCTTG+AGG | 0.646814 | 5.3:+27887986 | MS.gene91897:CDS |
TCGCCATGATCATGAAGCTG+CGG | 0.651139 | 5.3:+27888143 | MS.gene91897:CDS |
GGTGGCAGCTATGCAAGCAG+AGG | 0.672106 | 5.3:+27888380 | MS.gene91897:intron |
TCTGTGATGGCTGAGTCACA+AGG | 0.673947 | 5.3:+27887862 | None:intergenic |
TTGGTGCAAAGCAAGAAGGG+TGG | 0.674353 | 5.3:-27888223 | None:intergenic |
GTGCTTGCAAGTTCTTGAGG+AGG | 0.680170 | 5.3:+27887989 | MS.gene91897:CDS |
AAGAACTTGCAAGCACCACA+CGG | 0.685626 | 5.3:-27887982 | None:intergenic |
GAACCGATTATATCTCCGTG+TGG | 0.743633 | 5.3:+27887967 | MS.gene91897:CDS |
GTGATGGCTGAGTCACAAGG+TGG | 0.757627 | 5.3:+27887865 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATCATTTGCAGAATATTTT+CGG | + | chr5.3:27888306-27888325 | MS.gene91897:intron | 20.0% |
! | AAACTCAATTGATGAATAAG+AGG | + | chr5.3:27888415-27888434 | MS.gene91897:CDS | 25.0% |
!!! | TTCTGCAAATGATTTGTTAA+AGG | - | chr5.3:27888300-27888319 | None:intergenic | 25.0% |
AAATATTCTACTCAACCTGT+TGG | - | chr5.3:27888245-27888264 | None:intergenic | 30.0% | |
CTGCATAATAACTTACCTTA+TGG | + | chr5.3:27888349-27888368 | MS.gene91897:intron | 30.0% | |
GATGAGTTGTTGGAATATGC+TGG | - | chr5.3:27888506-27888525 | None:intergenic | 40.0% | |
! | ACTTACCTTATGGCTGATTC+AGG | + | chr5.3:27888359-27888378 | MS.gene91897:intron | 40.0% |
AAATGCTGCAAAGCGTGCAA+TGG | + | chr5.3:27887927-27887946 | MS.gene91897:CDS | 45.0% | |
AAGAACTTGCAAGCACCACA+CGG | - | chr5.3:27887985-27888004 | None:intergenic | 45.0% | |
AATTGAATCGGCGGCTGATA+TGG | - | chr5.3:27888476-27888495 | None:intergenic | 45.0% | |
ACCTTGGTCAGTACCAAAGT+AGG | - | chr5.3:27888043-27888062 | None:intergenic | 45.0% | |
ATGATCATGGCGATGGTTAG+CGG | - | chr5.3:27888136-27888155 | None:intergenic | 45.0% | |
ATGGTAGTAGTTCGGGAAAC+AGG | + | chr5.3:27887890-27887909 | MS.gene91897:CDS | 45.0% | |
ATTGAATCGGCGGCTGATAT+GGG | - | chr5.3:27888475-27888494 | None:intergenic | 45.0% | |
CCTTGGTCAGTACCAAAGTA+GGG | - | chr5.3:27888042-27888061 | None:intergenic | 45.0% | |
CTGTTGGTGCAAAGCAAGAA+GGG | - | chr5.3:27888229-27888248 | None:intergenic | 45.0% | |
GAACCGATTATATCTCCGTG+TGG | + | chr5.3:27887967-27887986 | MS.gene91897:CDS | 45.0% | |
GCACCACACGGAGATATAAT+CGG | - | chr5.3:27887973-27887992 | None:intergenic | 45.0% | |
GCTGGCTGCACAAATTGAAT+CGG | - | chr5.3:27888488-27888507 | None:intergenic | 45.0% | |
GTGGACACACAACCATAAAC+CGG | - | chr5.3:27888207-27888226 | None:intergenic | 45.0% | |
TGCATCTTTGCACCCTACTT+TGG | + | chr5.3:27888027-27888046 | MS.gene91897:CDS | 45.0% | |
TTTCCTATGAGGCTCAAGCT+AGG | + | chr5.3:27888172-27888191 | MS.gene91897:CDS | 45.0% | |
! | TACCTTATGGCTGATTCAGG+TGG | + | chr5.3:27888362-27888381 | MS.gene91897:intron | 45.0% |
! | TTGAGGAGGAAGTGTAGTAG+TGG | + | chr5.3:27888003-27888022 | MS.gene91897:CDS | 45.0% |
AGGTGGCGATGGTAGTAGTT+CGG | + | chr5.3:27887882-27887901 | MS.gene91897:CDS | 50.0% | |
CAGCTTCATGATCATGGCGA+TGG | - | chr5.3:27888143-27888162 | None:intergenic | 50.0% | |
CCAAGGTGCAGCTAAGTTTG+CGG | + | chr5.3:27888056-27888075 | MS.gene91897:CDS | 50.0% | |
CCTGTTGGTGCAAAGCAAGA+AGG | - | chr5.3:27888230-27888249 | None:intergenic | 50.0% | |
CCTTCTTGCTTTGCACCAAC+AGG | + | chr5.3:27888227-27888246 | MS.gene91897:CDS | 50.0% | |
GGCTGCACAAATTGAATCGG+CGG | - | chr5.3:27888485-27888504 | None:intergenic | 50.0% | |
GGTGGAAGCAGATGAGTTGT+TGG | - | chr5.3:27888516-27888535 | None:intergenic | 50.0% | |
GTGCTTGCAAGTTCTTGAGG+AGG | + | chr5.3:27887989-27888008 | MS.gene91897:CDS | 50.0% | |
GTGGTGCTTGCAAGTTCTTG+AGG | + | chr5.3:27887986-27888005 | MS.gene91897:CDS | 50.0% | |
TAAGTTTGCGGCTGTGCACA+AGG | + | chr5.3:27888068-27888087 | MS.gene91897:CDS | 50.0% | |
TAGCCTAGCTTGAGCCTCAT+AGG | - | chr5.3:27888178-27888197 | None:intergenic | 50.0% | |
TCGCCATGATCATGAAGCTG+CGG | + | chr5.3:27888143-27888162 | MS.gene91897:CDS | 50.0% | |
TGATCATGGCGATGGTTAGC+GGG | - | chr5.3:27888135-27888154 | None:intergenic | 50.0% | |
TGCCACCTGAATCAGCCATA+AGG | - | chr5.3:27888367-27888386 | None:intergenic | 50.0% | |
TGCGGCGACTATTTCCTATG+AGG | + | chr5.3:27888161-27888180 | MS.gene91897:CDS | 50.0% | |
TTGAATCGGCGGCTGATATG+GGG | - | chr5.3:27888474-27888493 | None:intergenic | 50.0% | |
TTGGTGCAAAGCAAGAAGGG+TGG | - | chr5.3:27888226-27888245 | None:intergenic | 50.0% | |
! | AGGCTAGCTGATCCGGTTTA+TGG | + | chr5.3:27888192-27888211 | MS.gene91897:CDS | 50.0% |
! | TCAAGCTAGGCTAGCTGATC+CGG | + | chr5.3:27888185-27888204 | MS.gene91897:CDS | 50.0% |
!! | CCCTACTTTGGTACTGACCA+AGG | + | chr5.3:27888039-27888058 | MS.gene91897:CDS | 50.0% |
CCGCAAACTTAGCTGCACCT+TGG | - | chr5.3:27888059-27888078 | None:intergenic | 55.0% | |
GGTGGCGATGGTAGTAGTTC+GGG | + | chr5.3:27887883-27887902 | MS.gene91897:CDS | 55.0% | |
TCGCCGCAGCTTCATGATCA+TGG | - | chr5.3:27888149-27888168 | None:intergenic | 55.0% | |
GCGATGGTTAGCGGGAACGT+TGG | - | chr5.3:27888127-27888146 | None:intergenic | 60.0% | |
GCTGAGTCACAAGGTGGCGA+TGG | + | chr5.3:27887871-27887890 | MS.gene91897:CDS | 60.0% | |
GGTGGCAGCTATGCAAGCAG+AGG | + | chr5.3:27888380-27888399 | MS.gene91897:intron | 60.0% | |
! | GCGGCTGTGCACAAGGTGTT+TGG | + | chr5.3:27888075-27888094 | MS.gene91897:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 27887868 | 27888548 | 27887868 | ID=MS.gene91897 |
chr5.3 | mRNA | 27887868 | 27888548 | 27887868 | ID=MS.gene91897.t1;Parent=MS.gene91897 |
chr5.3 | exon | 27887868 | 27888248 | 27887868 | ID=MS.gene91897.t1.exon1;Parent=MS.gene91897.t1 |
chr5.3 | CDS | 27887868 | 27888248 | 27887868 | ID=cds.MS.gene91897.t1;Parent=MS.gene91897.t1 |
chr5.3 | exon | 27888381 | 27888548 | 27888381 | ID=MS.gene91897.t1.exon2;Parent=MS.gene91897.t1 |
chr5.3 | CDS | 27888381 | 27888548 | 27888381 | ID=cds.MS.gene91897.t1;Parent=MS.gene91897.t1 |
Gene Sequence |
Protein sequence |