Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91972.t1 | KEH28482.1 | 77.9 | 589 | 36 | 3 | 1 | 588 | 1 | 496 | 5.50E-95 | 358.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91972.t1 | A0A072UFL9 | 77.9 | 589 | 36 | 3 | 1 | 588 | 1 | 496 | 4.0e-95 | 358.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91972.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91972.t1 | MTR_5g097950 | 76.501 | 583 | 72 | 4 | 7 | 588 | 14 | 532 | 0.0 | 837 |
MS.gene91972.t1 | MTR_5g097950 | 76.250 | 560 | 68 | 4 | 30 | 588 | 1 | 496 | 0.0 | 801 |
MS.gene91972.t1 | MTR_3g023750 | 67.811 | 233 | 71 | 1 | 360 | 588 | 161 | 393 | 2.14e-101 | 313 |
MS.gene91972.t1 | MTR_3g023750 | 79.310 | 116 | 24 | 0 | 65 | 180 | 80 | 195 | 8.16e-56 | 193 |
MS.gene91972.t1 | MTR_3g023750 | 32.000 | 225 | 89 | 6 | 264 | 424 | 161 | 385 | 1.61e-15 | 79.3 |
MS.gene91972.t1 | MTR_3g023750 | 29.518 | 166 | 93 | 3 | 417 | 580 | 82 | 225 | 1.13e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 4.79e-12 | 69.7 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 4.94e-11 | 66.2 |
MS.gene91972.t1 | AT5G61190 | 26.702 | 191 | 109 | 5 | 393 | 583 | 240 | 399 | 5.01e-12 | 69.3 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 4.87e-11 | 66.2 |
MS.gene91972.t1 | AT5G61190 | 26.702 | 191 | 109 | 5 | 393 | 583 | 240 | 399 | 5.01e-12 | 69.3 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 4.87e-11 | 66.2 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 5.15e-12 | 69.7 |
MS.gene91972.t1 | AT5G61190 | 27.189 | 217 | 104 | 9 | 397 | 578 | 298 | 495 | 5.26e-11 | 66.2 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 146 | 302 | 6.41e-12 | 69.3 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 204 | 409 | 6.73e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 146 | 302 | 6.41e-12 | 69.3 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 204 | 409 | 6.73e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 6.98e-12 | 68.9 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 6.78e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 7.49e-12 | 68.9 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 7.38e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 7.51e-12 | 68.9 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 7.60e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 7.66e-12 | 68.9 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 6.51e-11 | 65.9 |
MS.gene91972.t1 | AT5G61190 | 27.128 | 188 | 106 | 5 | 393 | 580 | 240 | 396 | 7.75e-12 | 68.9 |
MS.gene91972.t1 | AT5G61190 | 27.273 | 220 | 108 | 10 | 397 | 578 | 298 | 503 | 7.51e-11 | 65.9 |
Find 123 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTGGCAACTTCAAATTTA+TGG | 0.103793 | 5.2:-82467896 | MS.gene91972:CDS |
CTTCTTAGGCTCTGATTGTT+TGG | 0.209399 | 5.2:+82467484 | None:intergenic |
TTCGGCTAAAGGACCAATTA+AGG | 0.271027 | 5.2:+82467118 | None:intergenic |
ACAAAATCAACCTGCTTCTT+AGG | 0.280074 | 5.2:+82467470 | None:intergenic |
TTCAATGCTTCTAATATTGC+AGG | 0.282177 | 5.2:-82468155 | None:intergenic |
TGCGCAGAAGGCAAACTTGC+AGG | 0.288386 | 5.2:+82468013 | None:intergenic |
TTCTTAGGCTCTGATTGTTT+GGG | 0.304970 | 5.2:+82467485 | None:intergenic |
TTTCTTAGGCTCTGATTGTT+TGG | 0.305574 | 5.2:+82467196 | None:intergenic |
ATACTATCAACCTGTTTCTT+AGG | 0.309233 | 5.2:+82467632 | None:intergenic |
ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.2:+82466990 | None:intergenic |
ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.2:+82467086 | None:intergenic |
ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.2:+82467182 | None:intergenic |
ACAGAATCAACCTGTTTCTT+AGG | 0.324318 | 5.2:+82467374 | None:intergenic |
ATCCAAGGACAAACATTAAT+TGG | 0.324738 | 5.2:-82467419 | MS.gene91972:CDS |
CCGCTGCCAACACCGACTTT+TGG | 0.333602 | 5.2:+82465311 | None:intergenic |
CTTCTGCACGTAATGGTTCC+TGG | 0.342961 | 5.2:-82467913 | MS.gene91972:CDS |
ACCGCAATAGGCACTTCAAT+TGG | 0.345252 | 5.2:-82465272 | MS.gene91972:CDS |
TCACCATAGCAGCATGATTA+TGG | 0.346041 | 5.2:+82465072 | None:intergenic |
ACGGAATCAACCTGTTTCTT+AGG | 0.353929 | 5.2:+82467566 | None:intergenic |
CGTGCAGAAGGCAAACTTGC+AGG | 0.359812 | 5.2:+82467926 | None:intergenic |
GTTCTTCAAGTGTTTCTTAC+CGG | 0.360756 | 5.2:+82465352 | None:intergenic |
ATCCAAGGACAAGCGTTAAT+TGG | 0.362815 | 5.2:-82467035 | MS.gene91972:CDS |
GCCAATGCTTCTAATATTGC+CGG | 0.369202 | 5.2:-82467981 | MS.gene91972:CDS |
ATCCAAGGACAAGCATTAAT+TGG | 0.369738 | 5.2:-82467227 | MS.gene91972:CDS |
ATCCAATCACAAGCCTTAAT+TGG | 0.371873 | 5.2:-82467131 | MS.gene91972:CDS |
GAAACAGGTTGATTCTGTTA+AGG | 0.378526 | 5.2:-82466985 | MS.gene91972:CDS |
ATCCAAGGTCAAGCGTTAAT+TGG | 0.378876 | 5.2:-82467677 | MS.gene91972:CDS |
GGCTCTGATTGTTCGGCTAC+AGG | 0.383641 | 5.2:+82467299 | None:intergenic |
TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.2:+82467004 | None:intergenic |
TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.2:+82467100 | None:intergenic |
TTTCTTAGGCTCTGATTGTT+CGG | 0.390268 | 5.2:+82467580 | None:intergenic |
GGCTCTGATTGTTCGGCTAC+AGG | 0.393801 | 5.2:+82467587 | None:intergenic |
TGAACAGAAGGCAAACTTGC+AGG | 0.394062 | 5.2:+82468100 | None:intergenic |
GGCTCTGATTGTTCGGCTAT+AGG | 0.407509 | 5.2:+82467011 | None:intergenic |
GCAATCAGAGCCTAAGAAAC+AGG | 0.410131 | 5.2:-82467642 | MS.gene91972:CDS |
AAGCTTTGCTGACTTTGGTT+TGG | 0.410273 | 5.2:+82467846 | None:intergenic |
TCTGAAAGCTTTGCTGACTT+TGG | 0.410594 | 5.2:+82467841 | None:intergenic |
GCCATAAATTTGAAGTTGCC+AGG | 0.413010 | 5.2:+82467895 | None:intergenic |
GGCTCTGATTGTTCGGCTAA+AGG | 0.413854 | 5.2:+82467107 | None:intergenic |
GACCAATTAATGTTTGTCCT+TGG | 0.416054 | 5.2:+82467417 | None:intergenic |
ACTACCACCACCACCGCAAT+AGG | 0.416616 | 5.2:-82465284 | MS.gene91972:CDS |
CTTCTAATATTGCCGGCTCT+TGG | 0.421428 | 5.2:-82467974 | MS.gene91972:CDS |
ACAATCAGAGCCTAAGAAAC+AGG | 0.424333 | 5.2:-82467192 | MS.gene91972:CDS |
TTCGCATGAGATGCAATTGT+AGG | 0.424733 | 5.2:+82467722 | None:intergenic |
GACCAATTAAGGCTTGTGAT+TGG | 0.426163 | 5.2:+82467129 | None:intergenic |
TTTCTTAGGCTCTGATTGCC+CGG | 0.426220 | 5.2:+82467388 | None:intergenic |
GGCTCTGATTGCCCGGCTAC+AGG | 0.428818 | 5.2:+82467395 | None:intergenic |
TTGCAGGCGCTGCTGAAGTC+TGG | 0.435502 | 5.2:+82467942 | None:intergenic |
GCAATCAGAGCCTAAGAAAC+AGG | 0.437003 | 5.2:-82467384 | MS.gene91972:CDS |
ACATTAATTGGTCCTGTAGC+CGG | 0.438110 | 5.2:-82467407 | MS.gene91972:CDS |
GGTGAGTATTTAAATTTGCC+TGG | 0.438482 | 5.2:+82465102 | None:intergenic |
ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.2:-82467000 | MS.gene91972:CDS |
ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.2:-82467096 | MS.gene91972:CDS |
ACAATCAGAGCCTAAGAAAC+AGG | 0.441726 | 5.2:-82467576 | MS.gene91972:CDS |
GACCAATTAACGCTTGTCCT+TGG | 0.442236 | 5.2:+82467033 | None:intergenic |
GGCTCTGATTGCTCGCCTAC+AGG | 0.444213 | 5.2:+82467653 | None:intergenic |
AATGCCATCATTAGACTTCA+AGG | 0.445716 | 5.2:+82465517 | None:intergenic |
GACCAATTAATGCTTGTCCT+TGG | 0.452219 | 5.2:+82467225 | None:intergenic |
ACATATAACAAACATGTTGC+TGG | 0.455549 | 5.2:-82466924 | MS.gene91972:CDS |
GACCGATTAACGCTTGTCCT+TGG | 0.456245 | 5.2:+82467321 | None:intergenic |
TCCTTCAATACTTCTTGTGT+CGG | 0.457555 | 5.2:+82467529 | None:intergenic |
AGCTACACTGCACACTTGTC+CGG | 0.457647 | 5.2:-82465371 | MS.gene91972:CDS |
ATCCAAGGACAAGCGTTAAT+CGG | 0.462764 | 5.2:-82467323 | MS.gene91972:CDS |
ATCACCGTTACGCTTGAGTT+CGG | 0.470795 | 5.2:+82465481 | None:intergenic |
ACCGACACAAGAAGTATTGA+AGG | 0.474071 | 5.2:-82467530 | MS.gene91972:CDS |
CTTCTAATATTGCAGGCTGT+TGG | 0.480500 | 5.2:-82468148 | MS.gene91972:CDS |
CATTAATTGGTCCTGTAGCC+GGG | 0.486089 | 5.2:-82467406 | MS.gene91972:CDS |
GACTGCAAAATTACAAACAT+TGG | 0.486843 | 5.2:+82468067 | None:intergenic |
GCCGGCAATATTAGAAGCAT+TGG | 0.491299 | 5.2:+82467980 | None:intergenic |
TTGCTGACTTTGGTTTGGTT+AGG | 0.492552 | 5.2:+82467851 | None:intergenic |
CCGCAATAGGCACTTCAATT+GGG | 0.497753 | 5.2:-82465271 | MS.gene91972:CDS |
TATTGCGGTGGTGGTGGTAG+TGG | 0.498143 | 5.2:+82465286 | None:intergenic |
AGTTTGCCTTCTGCACGTAA+TGG | 0.498221 | 5.2:-82467920 | MS.gene91972:CDS |
CGCTTGAGTTCGGCAACAGA+TGG | 0.499244 | 5.2:+82465491 | None:intergenic |
GACCAATTAACGCTTGACCT+TGG | 0.509177 | 5.2:+82467675 | None:intergenic |
GACAGAGAAACGTAAAGCTA+TGG | 0.509221 | 5.2:-82465186 | MS.gene91972:CDS |
AGTTTGCCTTCTGTTCAGAA+TGG | 0.514605 | 5.2:-82468094 | MS.gene91972:CDS |
CATATAACAAACATGTTGCT+GGG | 0.516681 | 5.2:-82466923 | MS.gene91972:CDS |
TGAAGTGCCTATTGCGGTGG+TGG | 0.518303 | 5.2:+82465277 | None:intergenic |
CAGCATGATTATGGTCACTA+AGG | 0.520547 | 5.2:+82465081 | None:intergenic |
TCATGCTGCTATGGTGAAGA+AGG | 0.523999 | 5.2:-82465066 | MS.gene91972:CDS |
AGGCACTTCAATTGGGCCAC+GGG | 0.532255 | 5.2:-82465264 | MS.gene91972:CDS |
GGCATACCATTCTGCGCAGA+AGG | 0.536308 | 5.2:+82468001 | None:intergenic |
GCTGCTATGGTGAAGAAGGC+AGG | 0.537781 | 5.2:-82465062 | MS.gene91972:CDS |
ACAATCAGAGCCTAAGAAGC+AGG | 0.543600 | 5.2:-82467480 | MS.gene91972:CDS |
CCAAAAGTCGGTGTTGGCAG+CGG | 0.544449 | 5.2:-82465311 | MS.gene91972:CDS |
AAACGTAAAGCTATGGAAAG+AGG | 0.547369 | 5.2:-82465179 | MS.gene91972:CDS |
AAAAGCTGCTAAGAAAATCA+AGG | 0.554241 | 5.2:-82465447 | MS.gene91972:CDS |
TGGGAGAAAGCATGCTGCTA+AGG | 0.554649 | 5.2:-82466904 | MS.gene91972:intron |
TCAAGGTTGCTGAATCTGTA+TGG | 0.557151 | 5.2:-82465430 | MS.gene91972:CDS |
AAGAAGGCAGGGTTAATCAC+TGG | 0.566902 | 5.2:-82465050 | MS.gene91972:CDS |
GTCGGTTTGTACATTCTCAA+CGG | 0.567858 | 5.2:+82467547 | None:intergenic |
TGACCATAATCATGCTGCTA+TGG | 0.569530 | 5.2:-82465075 | MS.gene91972:CDS |
GGAATACCATTCTGAACAGA+AGG | 0.573481 | 5.2:+82468088 | None:intergenic |
ATGTACAAACTGACACAAGT+AGG | 0.574657 | 5.2:-82467346 | MS.gene91972:CDS |
AGTGCCTATTGCGGTGGTGG+TGG | 0.576879 | 5.2:+82465280 | None:intergenic |
TAGGCACTTCAATTGGGCCA+CGG | 0.577258 | 5.2:-82465265 | MS.gene91972:CDS |
AGTTTGCCTTCTGCGCAGAA+TGG | 0.578105 | 5.2:-82468007 | MS.gene91972:CDS |
CAATGTGGTGTGTAATAGCC+AGG | 0.584891 | 5.2:-82465120 | MS.gene91972:CDS |
AAACAGGTTGATAGTATACA+AGG | 0.585879 | 5.2:-82467626 | MS.gene91972:CDS |
TCAGATCCAAAAGTCGGTGT+TGG | 0.587240 | 5.2:-82465317 | MS.gene91972:CDS |
GTTGCCTTGAAGTCTAATGA+TGG | 0.591860 | 5.2:-82465521 | MS.gene91972:CDS |
ACATGCAATGTTGTATGCGT+TGG | 0.594466 | 5.2:-82466954 | MS.gene91972:CDS |
GCAGGGTTAATCACTGGTTG+AGG | 0.595222 | 5.2:-82465044 | None:intergenic |
TGGTGTGATGAACCAAGAGC+CGG | 0.601958 | 5.2:+82467962 | None:intergenic |
CTGCTATGGTGAAGAAGGCA+GGG | 0.602051 | 5.2:-82465061 | MS.gene91972:CDS |
CAGGAACCATTACGTGCAGA+AGG | 0.603247 | 5.2:+82467914 | None:intergenic |
CAAGCGTTAATTGGTCCTGT+AGG | 0.605906 | 5.2:-82467668 | MS.gene91972:CDS |
TTGAAGTCTAATGATGGCAT+TGG | 0.606462 | 5.2:-82465515 | MS.gene91972:CDS |
ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.2:-82467242 | MS.gene91972:CDS |
ACTGACACAAGTAGTATCCA+AGG | 0.607332 | 5.2:-82467434 | MS.gene91972:CDS |
ACTGACACAAGTAGTATCCA+AGG | 0.612630 | 5.2:-82467692 | MS.gene91972:CDS |
ACTAACTCAAGTAATATCCA+AGG | 0.626304 | 5.2:-82467050 | MS.gene91972:CDS |
TTCAGATAAACCGAAAACAA+AGG | 0.627362 | 5.2:-82465231 | MS.gene91972:CDS |
ACTGACACAAGTAGGATCCA+AGG | 0.632167 | 5.2:-82467338 | MS.gene91972:CDS |
CCCAATTGAAGTGCCTATTG+CGG | 0.632472 | 5.2:+82465271 | None:intergenic |
AAACTGTCAGATCCAAAAGT+CGG | 0.650475 | 5.2:-82465323 | MS.gene91972:CDS |
TAAGAAACACTTGAAGAACA+TGG | 0.658000 | 5.2:-82465348 | MS.gene91972:CDS |
AACACAAGAAGAATTTGCAA+CGG | 0.663613 | 5.2:-82467754 | MS.gene91972:CDS |
AATTGAAGTGCCTATTGCGG+TGG | 0.664606 | 5.2:+82465274 | None:intergenic |
GTTGCCGAACTCAAGCGTAA+CGG | 0.668233 | 5.2:-82465485 | MS.gene91972:CDS |
AGATAAACCGAAAACAAAGG+AGG | 0.682827 | 5.2:-82465228 | MS.gene91972:CDS |
AATGTGCACTTTATGCAATG+TGG | 0.705637 | 5.2:-82465135 | MS.gene91972:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAATATTTGATTGTTCA+AGG | + | chr5.2:82467456-82467475 | None:intergenic | 15.0% |
!! | TTCAAAGATTATATATAGTT+TGG | + | chr5.2:82467227-82467246 | None:intergenic | 15.0% |
!!! | CAATTTTTTTTTATCTTGAT+TGG | - | chr5.2:82466523-82466542 | MS.gene91972:intron | 15.0% |
!!! | TATGTAAAAATATAGTCTTT+TGG | - | chr5.2:82467314-82467333 | MS.gene91972:CDS | 15.0% |
!!! | TTTTTCTTTATTTATTTTGC+TGG | - | chr5.2:82467138-82467157 | MS.gene91972:CDS | 15.0% |
!! | GTAAAAGTAATCATTAACTA+CGG | + | chr5.2:82466390-82466409 | None:intergenic | 20.0% |
!!! | ATAAGGAAAAAATTGTTGTT+CGG | - | chr5.2:82466821-82466840 | MS.gene91972:intron | 20.0% |
!!! | TGAATATTTTGTATAACTGT+GGG | - | chr5.2:82466635-82466654 | MS.gene91972:intron | 20.0% |
!!! | TTTTATTTTCATGTAAGACA+TGG | + | chr5.2:82466472-82466491 | None:intergenic | 20.0% |
! | ACTCAGAAACATTTCATAAA+TGG | + | chr5.2:82467633-82467652 | None:intergenic | 25.0% |
! | AGATTATATATAGTTTGGCA+TGG | + | chr5.2:82467222-82467241 | None:intergenic | 25.0% |
! | ATTTAGCTAAAATGCATGTA+AGG | - | chr5.2:82466600-82466619 | MS.gene91972:intron | 25.0% |
! | GTATGAAAATAAGAGAATCT+TGG | + | chr5.2:82466740-82466759 | None:intergenic | 25.0% |
!! | GTGAATATTTTGTATAACTG+TGG | - | chr5.2:82466634-82466653 | MS.gene91972:intron | 25.0% |
!! | TAAGGAAAAAATTGTTGTTC+GGG | - | chr5.2:82466822-82466841 | MS.gene91972:intron | 25.0% |
!! | TGAACTGTAAGAAAAGTATA+AGG | - | chr5.2:82467600-82467619 | MS.gene91972:CDS | 25.0% |
!!! | TTACATGCATTTTAGCTAAA+TGG | + | chr5.2:82466601-82466620 | None:intergenic | 25.0% |
AAAACTAGTGTTGTCAATTG+TGG | + | chr5.2:82467483-82467502 | None:intergenic | 30.0% | |
AAAAGCTGCTAAGAAAATCA+AGG | - | chr5.2:82467750-82467769 | MS.gene91972:CDS | 30.0% | |
AACACAAGAAGAATTTGCAA+CGG | - | chr5.2:82465443-82465462 | MS.gene91972:CDS | 30.0% | |
AACCTAATATATGACCATAC+AGG | - | chr5.2:82467363-82467382 | MS.gene91972:CDS | 30.0% | |
ACATATAACAAACATGTTGC+TGG | - | chr5.2:82466273-82466292 | MS.gene91972:intron | 30.0% | |
ACATCATTAAATCCTTCTAG+TGG | + | chr5.2:82467091-82467110 | None:intergenic | 30.0% | |
ACTAACTCAAGTAATATCCA+AGG | - | chr5.2:82466147-82466166 | MS.gene91972:intron | 30.0% | |
ATCCAAGGACAAACATTAAT+TGG | - | chr5.2:82465778-82465797 | MS.gene91972:intron | 30.0% | |
ATGAGTTTAGTGTTGTGTTT+CGG | - | chr5.2:82466893-82466912 | MS.gene91972:intron | 30.0% | |
CATATAACAAACATGTTGCT+GGG | - | chr5.2:82466274-82466293 | MS.gene91972:intron | 30.0% | |
CTATCTATAGATATACATCC+AGG | + | chr5.2:82467546-82467565 | None:intergenic | 30.0% | |
GAAAATAAGAGAATCTTGGT+GGG | + | chr5.2:82466736-82466755 | None:intergenic | 30.0% | |
GACAGAACAAGAACATTAAA+AGG | - | chr5.2:82466499-82466518 | MS.gene91972:intron | 30.0% | |
GACTGCAAAATTACAAACAT+TGG | + | chr5.2:82465133-82465152 | None:intergenic | 30.0% | |
GGAAAAAGTAACTGGAAATA+AGG | - | chr5.2:82466804-82466823 | MS.gene91972:intron | 30.0% | |
GTTTAGCTAATTAACTCTGT+AGG | - | chr5.2:82466575-82466594 | MS.gene91972:intron | 30.0% | |
TAAGAAACACTTGAAGAACA+TGG | - | chr5.2:82467849-82467868 | MS.gene91972:CDS | 30.0% | |
TGAAAATAAGAGAATCTTGG+TGG | + | chr5.2:82466737-82466756 | None:intergenic | 30.0% | |
TTCAGATAAACCGAAAACAA+AGG | - | chr5.2:82467966-82467985 | MS.gene91972:CDS | 30.0% | |
TTCCTGTATGGTCATATATT+AGG | + | chr5.2:82467368-82467387 | None:intergenic | 30.0% | |
! | AATAGTCTTTTTCCACTAGA+AGG | - | chr5.2:82467076-82467095 | MS.gene91972:CDS | 30.0% |
! | ATACTATCAACCTGTTTCTT+AGG | + | chr5.2:82465568-82465587 | None:intergenic | 30.0% |
! | TGTAAGAAAAGTATAAGGCA+GGG | - | chr5.2:82467605-82467624 | MS.gene91972:CDS | 30.0% |
! | TTGTAGCTTTTGCAAAATCA+GGG | + | chr5.2:82466684-82466703 | None:intergenic | 30.0% |
! | TTTGTAGCTTTTGCAAAATC+AGG | + | chr5.2:82466685-82466704 | None:intergenic | 30.0% |
!! | AAACAGGTTGATAGTATACA+AGG | - | chr5.2:82465571-82465590 | MS.gene91972:intron | 30.0% |
!! | GTATTCTAGTTCAAACTAGT+TGG | - | chr5.2:82466766-82466785 | MS.gene91972:intron | 30.0% |
!!! | ACAGAATCAACCTGTTTTTT+AGG | + | chr5.2:82465922-82465941 | None:intergenic | 30.0% |
!!! | TTTTTTAGGCTCTGATTGTT+CGG | + | chr5.2:82465908-82465927 | None:intergenic | 30.0% |
AAACGTAAAGCTATGGAAAG+AGG | - | chr5.2:82468018-82468037 | MS.gene91972:CDS | 35.0% | |
AAACTGTCAGATCCAAAAGT+CGG | - | chr5.2:82467874-82467893 | MS.gene91972:CDS | 35.0% | |
AACCTATGAGTCACAAAAAG+TGG | + | chr5.2:82467659-82467678 | None:intergenic | 35.0% | |
AATACCTCTGTAGTTAACAG+AGG | + | chr5.2:82467047-82467066 | None:intergenic | 35.0% | |
AATGCCATCATTAGACTTCA+AGG | + | chr5.2:82467683-82467702 | None:intergenic | 35.0% | |
AATGTGCACTTTATGCAATG+TGG | - | chr5.2:82468062-82468081 | MS.gene91972:CDS | 35.0% | |
ACAAAATCAACCTGCTTCTT+AGG | + | chr5.2:82465730-82465749 | None:intergenic | 35.0% | |
ACAATCAGAGCCTAAAAAAC+AGG | - | chr5.2:82465909-82465928 | MS.gene91972:intron | 35.0% | |
AGATAAACCGAAAACAAAGG+AGG | - | chr5.2:82467969-82467988 | MS.gene91972:CDS | 35.0% | |
AGTGCTTTGCAAAATCATAG+TGG | - | chr5.2:82466704-82466723 | MS.gene91972:intron | 35.0% | |
ATCCAAGGACAAGCATTAAT+TGG | - | chr5.2:82465970-82465989 | MS.gene91972:intron | 35.0% | |
ATCCAATCACAAGCCTTAAT+TGG | - | chr5.2:82466066-82466085 | MS.gene91972:intron | 35.0% | |
ATGTACAAACTGACACAAGT+AGG | - | chr5.2:82465755-82465774 | MS.gene91972:intron | 35.0% | |
GACCAATTAATGTTTGTCCT+TGG | + | chr5.2:82465783-82465802 | None:intergenic | 35.0% | |
GAGTTCTATCATTTCCTGTA+TGG | + | chr5.2:82467380-82467399 | None:intergenic | 35.0% | |
GGTGAGTATTTAAATTTGCC+TGG | + | chr5.2:82468098-82468117 | None:intergenic | 35.0% | |
GTTCTTCAAGTGTTTCTTAC+CGG | + | chr5.2:82467848-82467867 | None:intergenic | 35.0% | |
GTTGCATGTAAGCTTACAAA+AGG | + | chr5.2:82466333-82466352 | None:intergenic | 35.0% | |
TATACATCCAGGATAACTGA+TGG | + | chr5.2:82467535-82467554 | None:intergenic | 35.0% | |
TCCTGGCAACTTCAAATTTA+TGG | - | chr5.2:82465301-82465320 | MS.gene91972:CDS | 35.0% | |
TCCTTCAATACTTCTTGTGT+CGG | + | chr5.2:82465671-82465690 | None:intergenic | 35.0% | |
TTATCTTGATTGGACACACA+AGG | - | chr5.2:82466533-82466552 | MS.gene91972:intron | 35.0% | |
TTGAAGTCTAATGATGGCAT+TGG | - | chr5.2:82467682-82467701 | MS.gene91972:CDS | 35.0% | |
! | ACAGAATCAACCTGTTTCTT+AGG | + | chr5.2:82465826-82465845 | None:intergenic | 35.0% |
! | CTGTAAGAAAAGTATAAGGC+AGG | - | chr5.2:82467604-82467623 | MS.gene91972:CDS | 35.0% |
! | GTTTTCGGTTTATCTGAATC+TGG | + | chr5.2:82467964-82467983 | None:intergenic | 35.0% |
! | TGTGCTTTTCAAAAGAGACT+TGG | + | chr5.2:82465411-82465430 | None:intergenic | 35.0% |
! | TTCTTAGGCTCTGATTGTTT+GGG | + | chr5.2:82465715-82465734 | None:intergenic | 35.0% |
! | TTTCTTAGGCTCTGATTGTT+CGG | + | chr5.2:82465620-82465639 | None:intergenic | 35.0% |
! | TTTCTTAGGCTCTGATTGTT+TGG | + | chr5.2:82465620-82465639 | None:intergenic | 35.0% |
! | TTTGTAATTTTGCAGTCTGC+TGG | - | chr5.2:82465136-82465155 | MS.gene91972:CDS | 35.0% |
!! | GAAACAGGTTGATTCTGTTA+AGG | - | chr5.2:82465828-82465847 | MS.gene91972:intron | 35.0% |
!! | TCTTTTGAAAAGCACATAGC+TGG | - | chr5.2:82465415-82465434 | MS.gene91972:CDS | 35.0% |
!!! | TCTGATACCTCCTTTGTTTT+CGG | + | chr5.2:82467979-82467998 | None:intergenic | 35.0% |
ACAATCAGAGCCTAAGAAAC+AGG | - | chr5.2:82465621-82465640 | MS.gene91972:intron | 40.0% | |
ACATGCAATGTTGTATGCGT+TGG | - | chr5.2:82466243-82466262 | MS.gene91972:intron | 40.0% | |
ACATTAATTGGTCCTGTAGC+CGG | - | chr5.2:82465790-82465809 | MS.gene91972:intron | 40.0% | |
ACTGACACAAGTAGTATCCA+AGG | - | chr5.2:82465505-82465524 | MS.gene91972:CDS | 40.0% | |
AGCTAGGTTCTACTGAAATC+AGG | + | chr5.2:82466984-82467003 | None:intergenic | 40.0% | |
AGTTTGCCTTCTGTTCAGAA+TGG | - | chr5.2:82465103-82465122 | MS.gene91972:CDS | 40.0% | |
ATCCAAGGACAAGCGTTAAT+CGG | - | chr5.2:82465874-82465893 | MS.gene91972:intron | 40.0% | |
ATCCAAGGACAAGCGTTAAT+TGG | - | chr5.2:82465874-82465893 | MS.gene91972:intron | 40.0% | |
ATCCAAGGTCAAGCGTTAAT+TGG | - | chr5.2:82465520-82465539 | MS.gene91972:CDS | 40.0% | |
ATCCACTGGGAAAAAGTAAC+TGG | - | chr5.2:82466796-82466815 | MS.gene91972:intron | 40.0% | |
CAGCATGATTATGGTCACTA+AGG | + | chr5.2:82468119-82468138 | None:intergenic | 40.0% | |
CTTCTAATATTGCAGGCTGT+TGG | - | chr5.2:82465049-82465068 | MS.gene91972:CDS | 40.0% | |
GACAGAGAAACGTAAAGCTA+TGG | - | chr5.2:82468011-82468030 | MS.gene91972:CDS | 40.0% | |
GACCAATTAAGGCTTGTGAT+TGG | + | chr5.2:82466071-82466090 | None:intergenic | 40.0% | |
GACCAATTAATGCTTGTCCT+TGG | + | chr5.2:82465975-82465994 | None:intergenic | 40.0% | |
GCCAATGCTTCTAATATTGC+CGG | - | chr5.2:82465216-82465235 | MS.gene91972:CDS | 40.0% | |
GCTAGGTTCTACTGAAATCA+GGG | + | chr5.2:82466983-82467002 | None:intergenic | 40.0% | |
GGAATACCATTCTGAACAGA+AGG | + | chr5.2:82465112-82465131 | None:intergenic | 40.0% | |
GTTGCCTTGAAGTCTAATGA+TGG | - | chr5.2:82467676-82467695 | MS.gene91972:CDS | 40.0% | |
TCAACGTTACAGTCGTTTCA+TGG | + | chr5.2:82466940-82466959 | None:intergenic | 40.0% | |
TCAAGGTTGCTGAATCTGTA+TGG | - | chr5.2:82467767-82467786 | MS.gene91972:CDS | 40.0% | |
TCACCATAGCAGCATGATTA+TGG | + | chr5.2:82468128-82468147 | None:intergenic | 40.0% | |
TCGTTTCATGGTCAAATTGC+AGG | + | chr5.2:82466928-82466947 | None:intergenic | 40.0% | |
TGACCATAATCATGCTGCTA+TGG | - | chr5.2:82468122-82468141 | MS.gene91972:CDS | 40.0% | |
TTCGCATGAGATGCAATTGT+AGG | + | chr5.2:82465478-82465497 | None:intergenic | 40.0% | |
TTCGGCTAAAGGACCAATTA+AGG | + | chr5.2:82466082-82466101 | None:intergenic | 40.0% | |
TTGTTTGCCATCAGTTATCC+TGG | - | chr5.2:82467525-82467544 | MS.gene91972:CDS | 40.0% | |
! | ACGGAATCAACCTGTTTCTT+AGG | + | chr5.2:82465634-82465653 | None:intergenic | 40.0% |
! | CTTCTTAGGCTCTGATTGTT+TGG | + | chr5.2:82465716-82465735 | None:intergenic | 40.0% |
! | GCCATAAATTTGAAGTTGCC+AGG | + | chr5.2:82465305-82465324 | None:intergenic | 40.0% |
!! | AAGCTTTGCTGACTTTGGTT+TGG | + | chr5.2:82465354-82465373 | None:intergenic | 40.0% |
!! | ACCGACACAAGAAGTATTGA+AGG | - | chr5.2:82465667-82465686 | MS.gene91972:intron | 40.0% |
!! | GTCGGTTTGTACATTCTCAA+CGG | + | chr5.2:82465653-82465672 | None:intergenic | 40.0% |
!! | TCTGAAAGCTTTGCTGACTT+TGG | + | chr5.2:82465359-82465378 | None:intergenic | 40.0% |
!! | TTGCTGACTTTGGTTTGGTT+AGG | + | chr5.2:82465349-82465368 | None:intergenic | 40.0% |
!!! | ATAAGTGGGAGGGTTTTTTG+AGG | - | chr5.2:82466862-82466881 | MS.gene91972:intron | 40.0% |
!!! | GACCACTTTTTGTGACTCAT+AGG | - | chr5.2:82467654-82467673 | MS.gene91972:CDS | 40.0% |
!!! | TTCCAGTTACTTTTTCCCAG+TGG | + | chr5.2:82466801-82466820 | None:intergenic | 40.0% |
AAGAAGGCAGGGTTAATCAC+TGG | - | chr5.2:82468147-82468166 | MS.gene91972:CDS | 45.0% | |
AAGGCAAGATAGGATCACTG+TGG | - | chr5.2:82466552-82466571 | MS.gene91972:intron | 45.0% | |
AATACTGTGGCATGACGTAG+CGG | + | chr5.2:82467008-82467027 | None:intergenic | 45.0% | |
ACAATCAGAGCCTAAGAAGC+AGG | - | chr5.2:82465717-82465736 | MS.gene91972:intron | 45.0% | |
ACAGCCTCTGTTAACTACAG+AGG | - | chr5.2:82467040-82467059 | MS.gene91972:CDS | 45.0% | |
ACCGCAATAGGCACTTCAAT+TGG | - | chr5.2:82467925-82467944 | MS.gene91972:CDS | 45.0% | |
ACTGACACAAGTAGGATCCA+AGG | - | chr5.2:82465859-82465878 | MS.gene91972:intron | 45.0% | |
AGGCAAGATAGGATCACTGT+GGG | - | chr5.2:82466553-82466572 | MS.gene91972:intron | 45.0% | |
AGTTTGCCTTCTGCACGTAA+TGG | - | chr5.2:82465277-82465296 | MS.gene91972:CDS | 45.0% | |
ATCACCGTTACGCTTGAGTT+CGG | + | chr5.2:82467719-82467738 | None:intergenic | 45.0% | |
ATGTAGACAGCGGCAATAAG+TGG | - | chr5.2:82466847-82466866 | MS.gene91972:intron | 45.0% | |
CAAGCGTTAATTGGTCCTGT+AGG | - | chr5.2:82465529-82465548 | MS.gene91972:intron | 45.0% | |
CAATGTGGTGTGTAATAGCC+AGG | - | chr5.2:82468077-82468096 | MS.gene91972:CDS | 45.0% | |
CATTAATTGGTCCTGTAGCC+GGG | - | chr5.2:82465791-82465810 | MS.gene91972:intron | 45.0% | |
CCACACATAATGCACACTAG+TGG | - | chr5.2:82466417-82466436 | MS.gene91972:intron | 45.0% | |
CCACTAGTGTGCATTATGTG+TGG | + | chr5.2:82466420-82466439 | None:intergenic | 45.0% | |
CCGCAATAGGCACTTCAATT+GGG | - | chr5.2:82467926-82467945 | MS.gene91972:CDS | 45.0% | |
GACCAATTAACGCTTGACCT+TGG | + | chr5.2:82465525-82465544 | None:intergenic | 45.0% | |
GACCAATTAACGCTTGTCCT+TGG | + | chr5.2:82466167-82466186 | None:intergenic | 45.0% | |
GCAATCAGAGCCTAAGAAAC+AGG | - | chr5.2:82465555-82465574 | MS.gene91972:intron | 45.0% | |
GTAGTTAACAGAGGCTGTTG+CGG | + | chr5.2:82467038-82467057 | None:intergenic | 45.0% | |
TCAGATCCAAAAGTCGGTGT+TGG | - | chr5.2:82467880-82467899 | MS.gene91972:CDS | 45.0% | |
TCATGCTGCTATGGTGAAGA+AGG | - | chr5.2:82468131-82468150 | MS.gene91972:CDS | 45.0% | |
TGAACAGAAGGCAAACTTGC+AGG | + | chr5.2:82465100-82465119 | None:intergenic | 45.0% | |
TGTAGACAGCGGCAATAAGT+GGG | - | chr5.2:82466848-82466867 | MS.gene91972:intron | 45.0% | |
TTGCGGACGCTATAATACTG+TGG | + | chr5.2:82467021-82467040 | None:intergenic | 45.0% | |
TTGGACACACAAGGCAAGAT+AGG | - | chr5.2:82466542-82466561 | MS.gene91972:intron | 45.0% | |
! | AATTGAAGTGCCTATTGCGG+TGG | + | chr5.2:82467926-82467945 | None:intergenic | 45.0% |
! | AGTTGGCTTACTCATCCACT+GGG | - | chr5.2:82466783-82466802 | MS.gene91972:intron | 45.0% |
! | CCCAATTGAAGTGCCTATTG+CGG | + | chr5.2:82467929-82467948 | None:intergenic | 45.0% |
! | GCCGGCAATATTAGAAGCAT+TGG | + | chr5.2:82465220-82465239 | None:intergenic | 45.0% |
! | TAGTTGGCTTACTCATCCAC+TGG | - | chr5.2:82466782-82466801 | MS.gene91972:intron | 45.0% |
! | TTTCTTAGGCTCTGATTGCC+CGG | + | chr5.2:82465812-82465831 | None:intergenic | 45.0% |
!! | CTGTGGGTTTGCTGAAATCT+CGG | - | chr5.2:82466651-82466670 | MS.gene91972:intron | 45.0% |
!! | CTTCTAATATTGCCGGCTCT+TGG | - | chr5.2:82465223-82465242 | MS.gene91972:CDS | 45.0% |
!!! | TCTGAATCTGGTTTTTCCCG+TGG | + | chr5.2:82467952-82467971 | None:intergenic | 45.0% |
AGCTACACTGCACACTTGTC+CGG | - | chr5.2:82467826-82467845 | MS.gene91972:CDS | 50.0% | |
AGTTTGCCTTCTGCGCAGAA+TGG | - | chr5.2:82465190-82465209 | MS.gene91972:CDS | 50.0% | |
CAGGAACCATTACGTGCAGA+AGG | + | chr5.2:82465286-82465305 | None:intergenic | 50.0% | |
CTGCTATGGTGAAGAAGGCA+GGG | - | chr5.2:82468136-82468155 | MS.gene91972:CDS | 50.0% | |
CTTCTGCACGTAATGGTTCC+TGG | - | chr5.2:82465284-82465303 | MS.gene91972:CDS | 50.0% | |
GACCGATTAACGCTTGTCCT+TGG | + | chr5.2:82465879-82465898 | None:intergenic | 50.0% | |
GTTGCCGAACTCAAGCGTAA+CGG | - | chr5.2:82467712-82467731 | MS.gene91972:CDS | 50.0% | |
TAGGCACTTCAATTGGGCCA+CGG | - | chr5.2:82467932-82467951 | MS.gene91972:CDS | 50.0% | |
TGGTGTGATGAACCAAGAGC+CGG | + | chr5.2:82465238-82465257 | None:intergenic | 50.0% | |
TGTTCGGGAGATGTAGACAG+CGG | - | chr5.2:82466837-82466856 | MS.gene91972:intron | 50.0% | |
! | ACTGTAACGTTGACTGCCAC+GGG | - | chr5.2:82466947-82466966 | MS.gene91972:CDS | 50.0% |
! | GACTGTAACGTTGACTGCCA+CGG | - | chr5.2:82466946-82466965 | MS.gene91972:CDS | 50.0% |
! | GGCTCTGATTGTTCGGCTAA+AGG | + | chr5.2:82466093-82466112 | None:intergenic | 50.0% |
! | GGCTCTGATTGTTCGGCTAT+AGG | + | chr5.2:82466189-82466208 | None:intergenic | 50.0% |
! | TGGGAGAAAGCATGCTGCTA+AGG | - | chr5.2:82466293-82466312 | MS.gene91972:intron | 50.0% |
ACTACCACCACCACCGCAAT+AGG | - | chr5.2:82467913-82467932 | MS.gene91972:CDS | 55.0% | |
AGACAGCGGCAATAAGTGGG+AGG | - | chr5.2:82466851-82466870 | MS.gene91972:intron | 55.0% | |
AGGCACTTCAATTGGGCCAC+GGG | - | chr5.2:82467933-82467952 | MS.gene91972:CDS | 55.0% | |
CGCTTGAGTTCGGCAACAGA+TGG | + | chr5.2:82467709-82467728 | None:intergenic | 55.0% | |
CGTGCAGAAGGCAAACTTGC+AGG | + | chr5.2:82465274-82465293 | None:intergenic | 55.0% | |
GACAGCGGCAATAAGTGGGA+GGG | - | chr5.2:82466852-82466871 | MS.gene91972:intron | 55.0% | |
GCTGCTATGGTGAAGAAGGC+AGG | - | chr5.2:82468135-82468154 | MS.gene91972:CDS | 55.0% | |
GGCATACCATTCTGCGCAGA+AGG | + | chr5.2:82465199-82465218 | None:intergenic | 55.0% | |
TGCGCAGAAGGCAAACTTGC+AGG | + | chr5.2:82465187-82465206 | None:intergenic | 55.0% | |
! | GGCTCTGATTGTTCGGCTAC+AGG | + | chr5.2:82465613-82465632 | None:intergenic | 55.0% |
! | TGAAGTGCCTATTGCGGTGG+TGG | + | chr5.2:82467923-82467942 | None:intergenic | 55.0% |
!! | CCAAAAGTCGGTGTTGGCAG+CGG | - | chr5.2:82467886-82467905 | MS.gene91972:CDS | 55.0% |
!! | TATTGCGGTGGTGGTGGTAG+TGG | + | chr5.2:82467914-82467933 | None:intergenic | 55.0% |
GGCATGACGTAGCGGTAGCT+AGG | + | chr5.2:82467000-82467019 | None:intergenic | 60.0% | |
! | AGTGCCTATTGCGGTGGTGG+TGG | + | chr5.2:82467920-82467939 | None:intergenic | 60.0% |
! | GGCTCTGATTGCTCGCCTAC+AGG | + | chr5.2:82465547-82465566 | None:intergenic | 60.0% |
! | TTGCAGGCGCTGCTGAAGTC+TGG | + | chr5.2:82465171-82465190 | None:intergenic | 60.0% |
!!! | CCGCTGCCAACACCGACTTT+TGG | + | chr5.2:82467889-82467908 | None:intergenic | 60.0% |
! | GGCTCTGATTGCCCGGCTAC+AGG | + | chr5.2:82465805-82465824 | None:intergenic | 65.0% |
TCAGGGCAGCGCAGTGCCCG+TGG | + | chr5.2:82466966-82466985 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 82465046 | 82468173 | 82465046 | ID=MS.gene91972 |
chr5.2 | mRNA | 82465046 | 82468173 | 82465046 | ID=MS.gene91972.t1;Parent=MS.gene91972 |
chr5.2 | exon | 82466905 | 82468173 | 82466905 | ID=MS.gene91972.t1.exon1;Parent=MS.gene91972.t1 |
chr5.2 | CDS | 82466905 | 82468173 | 82466905 | ID=cds.MS.gene91972.t1;Parent=MS.gene91972.t1 |
chr5.2 | exon | 82465046 | 82465543 | 82465046 | ID=MS.gene91972.t1.exon2;Parent=MS.gene91972.t1 |
chr5.2 | CDS | 82465046 | 82465543 | 82465046 | ID=cds.MS.gene91972.t1;Parent=MS.gene91972.t1 |
Gene Sequence |
Protein sequence |