Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92050.t1 | XP_024632961.1 | 78.2 | 800 | 62 | 6 | 1 | 688 | 1 | 800 | 0.00E+00 | 1189.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92050.t1 | Q9SZL8 | 24.7 | 600 | 365 | 16 | 35 | 581 | 72 | 637 | 2.4e-40 | 168.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92050.t1 | D3YBB9 | 71.3 | 756 | 116 | 5 | 18 | 680 | 65 | 812 | 2.0e-298 | 1034.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene92050.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92050.t1 | MTR_0558s0020 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 578 |
MS.gene92050.t1 | MTR_1g083640 | 89.161 | 286 | 16 | 1 | 1 | 271 | 1 | 286 | 0.0 | 528 |
MS.gene92050.t1 | MTR_8g446020 | 79.392 | 296 | 21 | 2 | 1 | 296 | 1 | 256 | 3.10e-162 | 468 |
MS.gene92050.t1 | MTR_2g014100 | 86.939 | 245 | 24 | 1 | 1 | 237 | 1 | 245 | 2.52e-152 | 442 |
MS.gene92050.t1 | MTR_0337s0040 | 75.769 | 260 | 24 | 1 | 1 | 260 | 1 | 221 | 3.78e-131 | 387 |
MS.gene92050.t1 | MTR_3g008240 | 88.177 | 203 | 24 | 0 | 1 | 203 | 1 | 203 | 1.84e-126 | 374 |
MS.gene92050.t1 | MTR_4g040430 | 88.670 | 203 | 18 | 2 | 1 | 203 | 1 | 198 | 9.95e-124 | 367 |
MS.gene92050.t1 | MTR_5g071590 | 82.222 | 180 | 20 | 1 | 1 | 168 | 1 | 180 | 3.24e-101 | 309 |
MS.gene92050.t1 | MTR_0337s0060 | 55.593 | 295 | 31 | 5 | 384 | 675 | 42 | 239 | 1.55e-91 | 286 |
MS.gene92050.t1 | MTR_1g055240 | 92.254 | 142 | 11 | 0 | 92 | 233 | 3 | 144 | 5.50e-89 | 276 |
MS.gene92050.t1 | MTR_0019s0290 | 87.500 | 152 | 19 | 0 | 83 | 234 | 9 | 160 | 1.95e-88 | 275 |
MS.gene92050.t1 | MTR_3g028680 | 78.481 | 158 | 31 | 1 | 534 | 688 | 1 | 158 | 5.18e-80 | 253 |
MS.gene92050.t1 | MTR_2g067090 | 79.355 | 155 | 29 | 1 | 537 | 688 | 99 | 253 | 2.59e-77 | 250 |
MS.gene92050.t1 | MTR_1281s0010 | 90.826 | 109 | 10 | 0 | 20 | 128 | 1 | 109 | 6.31e-66 | 213 |
MS.gene92050.t1 | MTR_4g133495 | 63.536 | 181 | 37 | 3 | 492 | 666 | 88 | 245 | 7.29e-66 | 219 |
MS.gene92050.t1 | MTR_4g133340 | 63.536 | 181 | 37 | 3 | 492 | 666 | 88 | 245 | 7.29e-66 | 219 |
MS.gene92050.t1 | MTR_6g051425 | 30.503 | 318 | 190 | 6 | 41 | 342 | 22 | 324 | 7.54e-39 | 147 |
MS.gene92050.t1 | MTR_4g008820 | 88.750 | 80 | 9 | 0 | 1 | 80 | 125 | 204 | 8.03e-38 | 150 |
MS.gene92050.t1 | MTR_8g046060 | 82.955 | 88 | 7 | 2 | 1 | 80 | 91 | 178 | 3.98e-37 | 139 |
MS.gene92050.t1 | MTR_2g067130 | 84.615 | 78 | 12 | 0 | 611 | 688 | 46 | 123 | 6.93e-36 | 133 |
MS.gene92050.t1 | MTR_6g090505 | 38.333 | 180 | 55 | 5 | 367 | 531 | 224 | 362 | 8.71e-23 | 101 |
MS.gene92050.t1 | MTR_1g070355 | 27.055 | 292 | 186 | 6 | 6 | 292 | 42 | 311 | 2.62e-19 | 92.8 |
MS.gene92050.t1 | MTR_0337s0050 | 80.556 | 36 | 7 | 0 | 260 | 295 | 14 | 49 | 1.29e-14 | 69.7 |
MS.gene92050.t1 | MTR_0402s0040 | 24.865 | 185 | 120 | 4 | 50 | 234 | 40 | 205 | 1.12e-12 | 71.2 |
MS.gene92050.t1 | MTR_1g013060 | 30.172 | 232 | 138 | 9 | 29 | 254 | 14 | 227 | 1.17e-12 | 68.6 |
MS.gene92050.t1 | MTR_4g035820 | 23.396 | 265 | 178 | 5 | 41 | 300 | 80 | 324 | 2.79e-12 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92050.t1 | AT4G38180 | 30.892 | 314 | 196 | 6 | 35 | 346 | 72 | 366 | 1.04e-39 | 157 |
MS.gene92050.t1 | AT5G28530 | 24.227 | 582 | 369 | 16 | 41 | 576 | 60 | 615 | 1.63e-35 | 144 |
MS.gene92050.t1 | AT5G28530 | 24.227 | 582 | 369 | 16 | 41 | 576 | 60 | 615 | 1.63e-35 | 144 |
MS.gene92050.t1 | AT5G28530 | 24.403 | 586 | 367 | 17 | 41 | 576 | 60 | 619 | 3.05e-34 | 140 |
MS.gene92050.t1 | AT1G76320 | 23.209 | 698 | 403 | 21 | 42 | 669 | 3 | 637 | 4.93e-33 | 136 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 3 | 599 | 9.14e-33 | 135 |
MS.gene92050.t1 | AT1G76320 | 23.209 | 698 | 403 | 21 | 42 | 669 | 3 | 637 | 9.22e-33 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 9.24e-33 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 9.24e-33 | 135 |
MS.gene92050.t1 | AT1G76320 | 23.209 | 698 | 403 | 21 | 42 | 669 | 3 | 637 | 9.46e-33 | 135 |
MS.gene92050.t1 | AT1G76320 | 23.209 | 698 | 403 | 21 | 42 | 669 | 3 | 637 | 9.46e-33 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 1.09e-32 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 3 | 599 | 1.11e-32 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 1.22e-32 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 1.22e-32 | 135 |
MS.gene92050.t1 | AT2G32250 | 24.128 | 688 | 373 | 23 | 42 | 671 | 44 | 640 | 1.22e-32 | 135 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 14 | 583 | 6.01e-30 | 127 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 14 | 583 | 6.01e-30 | 127 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 14 | 583 | 7.01e-30 | 127 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 14 | 583 | 7.01e-30 | 127 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 28 | 597 | 7.50e-30 | 126 |
MS.gene92050.t1 | AT4G19990 | 23.742 | 636 | 360 | 21 | 29 | 605 | 14 | 583 | 7.60e-30 | 126 |
MS.gene92050.t1 | AT1G80010 | 23.422 | 602 | 353 | 22 | 42 | 577 | 101 | 660 | 1.03e-29 | 126 |
MS.gene92050.t1 | AT4G19990 | 25.676 | 444 | 249 | 14 | 220 | 605 | 106 | 526 | 1.20e-29 | 125 |
MS.gene92050.t1 | AT3G06250 | 27.586 | 319 | 167 | 8 | 31 | 346 | 185 | 442 | 2.06e-29 | 125 |
MS.gene92050.t1 | AT3G06250 | 27.586 | 319 | 167 | 8 | 31 | 346 | 185 | 442 | 2.06e-29 | 125 |
MS.gene92050.t1 | AT3G06250 | 27.586 | 319 | 167 | 8 | 31 | 346 | 185 | 442 | 2.06e-29 | 125 |
MS.gene92050.t1 | AT4G15090 | 28.763 | 299 | 192 | 6 | 51 | 348 | 66 | 344 | 2.14e-26 | 115 |
MS.gene92050.t1 | AT4G15090 | 36.029 | 136 | 70 | 3 | 507 | 639 | 545 | 666 | 1.52e-16 | 84.7 |
MS.gene92050.t1 | AT4G15090 | 28.763 | 299 | 192 | 6 | 51 | 348 | 66 | 344 | 2.14e-26 | 115 |
MS.gene92050.t1 | AT4G15090 | 36.029 | 136 | 70 | 3 | 507 | 639 | 545 | 666 | 1.52e-16 | 84.7 |
MS.gene92050.t1 | AT4G15090 | 28.763 | 299 | 192 | 6 | 51 | 348 | 66 | 344 | 2.14e-26 | 115 |
MS.gene92050.t1 | AT4G15090 | 36.029 | 136 | 70 | 3 | 507 | 639 | 545 | 666 | 1.52e-16 | 84.7 |
MS.gene92050.t1 | AT4G15090 | 28.763 | 299 | 192 | 6 | 51 | 348 | 66 | 344 | 2.14e-26 | 115 |
MS.gene92050.t1 | AT4G15090 | 36.029 | 136 | 70 | 3 | 507 | 639 | 545 | 666 | 1.52e-16 | 84.7 |
MS.gene92050.t1 | AT4G15090 | 28.763 | 299 | 192 | 6 | 51 | 348 | 66 | 344 | 2.14e-26 | 115 |
MS.gene92050.t1 | AT4G15090 | 36.029 | 136 | 70 | 3 | 507 | 639 | 545 | 666 | 1.52e-16 | 84.7 |
MS.gene92050.t1 | AT2G27110 | 36.296 | 135 | 86 | 0 | 214 | 348 | 181 | 315 | 6.01e-26 | 114 |
MS.gene92050.t1 | AT2G27110 | 27.976 | 168 | 106 | 5 | 529 | 696 | 537 | 689 | 7.46e-12 | 69.3 |
MS.gene92050.t1 | AT2G27110 | 36.296 | 135 | 86 | 0 | 214 | 348 | 181 | 315 | 6.01e-26 | 114 |
MS.gene92050.t1 | AT2G27110 | 27.976 | 168 | 106 | 5 | 529 | 696 | 537 | 689 | 7.46e-12 | 69.3 |
MS.gene92050.t1 | AT2G27110 | 36.842 | 133 | 84 | 0 | 214 | 346 | 36 | 168 | 7.03e-26 | 114 |
MS.gene92050.t1 | AT2G27110 | 27.976 | 168 | 106 | 5 | 529 | 696 | 392 | 544 | 6.78e-12 | 69.3 |
MS.gene92050.t1 | AT5G18960 | 25.758 | 330 | 180 | 10 | 22 | 346 | 197 | 466 | 1.51e-25 | 113 |
MS.gene92050.t1 | AT5G18960 | 25.758 | 330 | 180 | 10 | 22 | 346 | 197 | 466 | 1.51e-25 | 113 |
MS.gene92050.t1 | AT4G38170 | 31.285 | 179 | 92 | 3 | 236 | 387 | 24 | 198 | 3.62e-24 | 107 |
MS.gene92050.t1 | AT1G10240 | 25.000 | 304 | 200 | 8 | 50 | 346 | 62 | 344 | 1.31e-22 | 103 |
MS.gene92050.t1 | AT1G10240 | 25.000 | 304 | 200 | 8 | 50 | 346 | 62 | 344 | 1.31e-22 | 103 |
MS.gene92050.t1 | AT3G22170 | 23.988 | 321 | 199 | 7 | 33 | 345 | 67 | 350 | 2.18e-20 | 97.1 |
MS.gene92050.t1 | AT3G22170 | 34.167 | 120 | 63 | 3 | 507 | 624 | 554 | 659 | 6.11e-11 | 66.6 |
MS.gene92050.t1 | AT3G22170 | 23.988 | 321 | 199 | 7 | 33 | 345 | 67 | 350 | 2.18e-20 | 97.1 |
MS.gene92050.t1 | AT3G22170 | 34.167 | 120 | 63 | 3 | 507 | 624 | 554 | 659 | 6.11e-11 | 66.6 |
MS.gene92050.t1 | AT1G52520 | 25.566 | 309 | 194 | 8 | 42 | 348 | 91 | 365 | 7.71e-20 | 94.7 |
Find 103 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTGCTTCTTTGACTTAAT+TGG | 0.124595 | 3.2:-36631880 | None:intergenic |
TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 3.2:+36631060 | MS.gene92050:CDS |
TAAATTTCAGCTGCCTTTAT+TGG | 0.156227 | 3.2:+36630470 | MS.gene92050:intron |
CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 3.2:+36631018 | MS.gene92050:intron |
AATCGTCTGTGGTTTCTTAT+TGG | 0.195298 | 3.2:-36630597 | None:intergenic |
TTATGATGATGCCGATAATA+AGG | 0.236951 | 3.2:+36631285 | MS.gene92050:CDS |
AACATCAAGGTCAACTGTTT+TGG | 0.240345 | 3.2:+36632561 | MS.gene92050:CDS |
TTCTTTGACTTAATTGGATT+TGG | 0.252387 | 3.2:-36631874 | None:intergenic |
GCCTTCCAATGTTGATGTTT+TGG | 0.255265 | 3.2:+36631309 | MS.gene92050:CDS |
GAATTTGAGAAACGAGTTAT+TGG | 0.262417 | 3.2:+36632499 | MS.gene92050:CDS |
TTCCATGATTCTTTATTGTT+AGG | 0.270360 | 3.2:-36629212 | None:intergenic |
GCTATTGGTGAAACATCTTC+TGG | 0.290527 | 3.2:+36631817 | MS.gene92050:CDS |
TTGAAGATCTTGAAGTTCTT+AGG | 0.295702 | 3.2:+36631478 | MS.gene92050:CDS |
TCTGCTGTTGGCCTGTTGTT+AGG | 0.299104 | 3.2:-36629422 | None:intergenic |
TTACTTCTCGAAATGATCTA+AGG | 0.311482 | 3.2:-36629613 | None:intergenic |
CAACTAGATTATTCTCTATT+CGG | 0.323831 | 3.2:+36629929 | MS.gene92050:CDS |
TCCATGATTCTTTATTGTTA+GGG | 0.363624 | 3.2:-36629211 | None:intergenic |
ATGATTGTCAAAACCAATAA+AGG | 0.372830 | 3.2:-36630483 | None:intergenic |
ATTGGAAGGCCCCTTATTAT+CGG | 0.373121 | 3.2:-36631296 | None:intergenic |
GCCGATATTTATTGTTTGTC+CGG | 0.373278 | 3.2:-36629979 | None:intergenic |
TATGATGATGCCGATAATAA+GGG | 0.374163 | 3.2:+36631286 | MS.gene92050:CDS |
CTCGACGGTGTTCTTGAAGC+TGG | 0.383392 | 3.2:+36631718 | MS.gene92050:CDS |
AACAATAAATATCGGCCATT+AGG | 0.388497 | 3.2:+36629986 | MS.gene92050:CDS |
GAGAACGTCTTATGAAGTTA+TGG | 0.394356 | 3.2:+36629688 | MS.gene92050:CDS |
TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 3.2:-36631856 | None:intergenic |
TTCCTTCAAATACTATTATG+AGG | 0.399583 | 3.2:+36631192 | MS.gene92050:CDS |
CATGTCGTATGTTTGAGAAC+AGG | 0.415108 | 3.2:+36631434 | MS.gene92050:CDS |
CTATTGGTGAAACATCTTCT+GGG | 0.426700 | 3.2:+36631818 | MS.gene92050:CDS |
ACCGGACAAACAATAAATAT+CGG | 0.427277 | 3.2:+36629978 | MS.gene92050:CDS |
GAAGTTATGGGTCAAGGAGT+TGG | 0.428685 | 3.2:+36629701 | MS.gene92050:CDS |
CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 3.2:+36629626 | MS.gene92050:CDS |
GATCATGATCTTCAAACCTT+GGG | 0.430100 | 3.2:-36631357 | None:intergenic |
CGATCATGATCTTCAAACCT+TGG | 0.434642 | 3.2:-36631358 | None:intergenic |
GAGGAGTTGCTTCTTTCTAA+AGG | 0.437852 | 3.2:+36631751 | MS.gene92050:CDS |
TCTTCAAAAGTAGCTGCTAT+TGG | 0.439493 | 3.2:+36631802 | MS.gene92050:CDS |
TTCTTTGAACTTTGGTGCGG+TGG | 0.447203 | 3.2:-36631848 | None:intergenic |
CGTTATGTTTGTAACAAAGA+AGG | 0.449439 | 3.2:+36629374 | MS.gene92050:CDS |
ATGTGTATAAGATATATAGA+TGG | 0.452819 | 3.2:+36629543 | MS.gene92050:CDS |
CTTGCTTTGCATTTATTCAC+AGG | 0.460007 | 3.2:+36631158 | MS.gene92050:CDS |
GCTCTTATAAATTCTAAAGC+TGG | 0.462891 | 3.2:+36629656 | MS.gene92050:CDS |
GACCGCATCAGCTGACTGTT+GGG | 0.463150 | 3.2:-36631112 | None:intergenic |
AGAACGTCTTATGAAGTTAT+GGG | 0.466325 | 3.2:+36629689 | MS.gene92050:CDS |
GTTTACTTAATCCTAACAAC+AGG | 0.470860 | 3.2:+36629411 | MS.gene92050:CDS |
CGCTTTAAAACATATTGTCC+AGG | 0.471916 | 3.2:-36631535 | None:intergenic |
CTAAGGTAACGCGAATGCTC+TGG | 0.476897 | 3.2:-36629596 | None:intergenic |
ATCATGATCGATTTGATGAA+AGG | 0.476999 | 3.2:+36631371 | MS.gene92050:CDS |
TTTAAGTCTGAAAACCGAAA+AGG | 0.483010 | 3.2:-36629740 | None:intergenic |
GAATTTGAGTTTAATGTGAG+TGG | 0.483644 | 3.2:+36632472 | MS.gene92050:intron |
CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 3.2:-36631194 | None:intergenic |
CTTTCTAAAGGTATTCGTAC+AGG | 0.486879 | 3.2:+36631763 | MS.gene92050:CDS |
CATTCTTTGAAGACAATACC+TGG | 0.489494 | 3.2:+36631517 | MS.gene92050:CDS |
CCCCTAACAATAAAGAATCA+TGG | 0.490467 | 3.2:+36629210 | MS.gene92050:CDS |
TATGAGGAGGACACAACAAA+AGG | 0.490908 | 3.2:+36631208 | MS.gene92050:CDS |
TTGAAGACTTAGATGGCGTC+GGG | 0.493598 | 3.2:-36631786 | None:intergenic |
ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 3.2:+36631032 | MS.gene92050:CDS |
GAAATGGTTGGTTGTAAAGC+TGG | 0.498691 | 3.2:+36629491 | MS.gene92050:CDS |
TGAATAAATGCAAAGCAAGA+AGG | 0.503349 | 3.2:-36631154 | None:intergenic |
TCTTTGAACTTTGGTGCGGT+GGG | 0.503874 | 3.2:-36631847 | None:intergenic |
TTACAACCAACCATTTCCTC+AGG | 0.504958 | 3.2:-36629485 | None:intergenic |
AGCTGGAATATATTTGAAGC+TGG | 0.507410 | 3.2:+36629508 | MS.gene92050:CDS |
GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 3.2:+36631051 | MS.gene92050:CDS |
ACAAAACAAGAAATCTGATA+AGG | 0.511435 | 3.2:+36629340 | MS.gene92050:CDS |
GAATAAATGCAAAGCAAGAA+GGG | 0.521406 | 3.2:-36631153 | None:intergenic |
TAACAAAGAAGGTTTCAAGA+AGG | 0.525236 | 3.2:+36629385 | MS.gene92050:CDS |
TAAGATATATAGATGGGATG+TGG | 0.528498 | 3.2:+36629550 | MS.gene92050:CDS |
CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 3.2:-36631189 | None:intergenic |
TTCACAAACTCAATAACAAG+TGG | 0.529891 | 3.2:-36629449 | None:intergenic |
ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 3.2:+36631209 | MS.gene92050:CDS |
TGCATCCAAAACATCAACAT+TGG | 0.544202 | 3.2:-36631314 | None:intergenic |
CCATGATTCTTTATTGTTAG+GGG | 0.545134 | 3.2:-36629210 | None:intergenic |
AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 3.2:+36629386 | MS.gene92050:CDS |
GAATGCTCTGGTTTGTGTAA+TGG | 0.548107 | 3.2:-36629584 | None:intergenic |
AACACAATAACGCACTAGCC+TGG | 0.552106 | 3.2:-36630628 | None:intergenic |
ATGTCGTATGTTTGAGAACA+GGG | 0.560861 | 3.2:+36631435 | MS.gene92050:CDS |
GGTAATTATGCATATAACAC+AGG | 0.568270 | 3.2:+36629278 | MS.gene92050:CDS |
TCCAAAACATCAACATTGGA+AGG | 0.569301 | 3.2:-36631310 | None:intergenic |
GGACCGCATCAGCTGACTGT+TGG | 0.570066 | 3.2:-36631113 | None:intergenic |
AAGATCTTGAAGTTCTTAGG+TGG | 0.573695 | 3.2:+36631481 | MS.gene92050:CDS |
TTTGAAGACTTAGATGGCGT+CGG | 0.575863 | 3.2:-36631787 | None:intergenic |
GTTATGGGTCAAGGAGTTGG+AGG | 0.578191 | 3.2:+36629704 | MS.gene92050:CDS |
TCTTATGAAGTTATGGGTCA+AGG | 0.580120 | 3.2:+36629695 | MS.gene92050:CDS |
TTCAAGAAAACGTTTCCCCA+AGG | 0.588789 | 3.2:+36631341 | MS.gene92050:CDS |
ATCCCAACAGTCAGCTGATG+CGG | 0.597403 | 3.2:+36631110 | MS.gene92050:CDS |
TGTGTATAAGATATATAGAT+GGG | 0.601002 | 3.2:+36629544 | MS.gene92050:CDS |
TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 3.2:-36631626 | None:intergenic |
CTTCAAATACTATTATGAGG+AGG | 0.607664 | 3.2:+36631195 | MS.gene92050:CDS |
GATTTCAGCTTATCGACAGA+CGG | 0.609719 | 3.2:-36631577 | None:intergenic |
ATTTCAGCTTATCGACAGAC+GGG | 0.611028 | 3.2:-36631576 | None:intergenic |
CACAAACACAGACAACATCA+AGG | 0.611927 | 3.2:+36632548 | MS.gene92050:CDS |
ATCATGATCTTCAAACCTTG+GGG | 0.630883 | 3.2:-36631356 | None:intergenic |
ATGATGATGCCGATAATAAG+GGG | 0.635791 | 3.2:+36631287 | MS.gene92050:CDS |
GGGTCAAGGAGTTGGAGGCA+CGG | 0.637387 | 3.2:+36629709 | MS.gene92050:CDS |
ACAAGTGGACTGTCTGCTGT+TGG | 0.638851 | 3.2:-36629434 | None:intergenic |
CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 3.2:+36631033 | MS.gene92050:CDS |
ATATCAACTTCATCTGAGAG+TGG | 0.645542 | 3.2:+36629131 | MS.gene92050:CDS |
TGGTCTGTATAAATCGTCTG+TGG | 0.650424 | 3.2:-36630608 | None:intergenic |
TGTCGTATGTTTGAGAACAG+GGG | 0.653807 | 3.2:+36631436 | MS.gene92050:CDS |
TCTTTCTTTGAACTTTGGTG+CGG | 0.659854 | 3.2:-36631851 | None:intergenic |
CTGAAATCGACTGTCAATAG+CGG | 0.660444 | 3.2:+36631592 | MS.gene92050:CDS |
AATAAATGCAAAGCAAGAAG+GGG | 0.664515 | 3.2:-36631152 | None:intergenic |
TATTGGTGAAACATCTTCTG+GGG | 0.678807 | 3.2:+36631819 | MS.gene92050:CDS |
AGGGGTGTACTTGTTTACAA+CGG | 0.695086 | 3.2:-36631134 | None:intergenic |
ACAGACGATTTATACAGACC+AGG | 0.720235 | 3.2:+36630610 | MS.gene92050:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTATTTTGATATGATTTAT+TGG | + | chr3.2:36632064-36632083 | MS.gene92050:intron | 10.0% |
!! | AAACCAAAATAATTATCTAA+TGG | - | chr3.2:36632213-36632232 | None:intergenic | 15.0% |
!! | GTTTAACTATTATTGATAAA+TGG | - | chr3.2:36632301-36632320 | None:intergenic | 15.0% |
!!! | AAACCATTAGATAATTATTT+TGG | + | chr3.2:36632207-36632226 | MS.gene92050:intron | 15.0% |
!!! | AATCAAATTTTGACTATAAT+TGG | + | chr3.2:36630792-36630811 | MS.gene92050:CDS | 15.0% |
!!! | ATCAAATTTTGACTATAATT+GGG | + | chr3.2:36630793-36630812 | MS.gene92050:CDS | 15.0% |
!!! | ATGTATTGATGATTATATTT+TGG | + | chr3.2:36632117-36632136 | MS.gene92050:intron | 15.0% |
!!! | ATTGATTGTTTTTATAAGTT+TGG | + | chr3.2:36632004-36632023 | MS.gene92050:intron | 15.0% |
!!! | TTTTATAAGTTTGGTTTTTT+AGG | + | chr3.2:36632013-36632032 | MS.gene92050:intron | 15.0% |
!!! | TTTTGATGAGTTAAATAATT+TGG | + | chr3.2:36630751-36630770 | MS.gene92050:CDS | 15.0% |
!! | AAACCATAAGTAGTATTTAA+TGG | - | chr3.2:36632256-36632275 | None:intergenic | 20.0% |
!! | AAACCATTAAATACTACTTA+TGG | + | chr3.2:36632250-36632269 | MS.gene92050:intron | 20.0% |
!! | ACATACTTATTAGAATACTT+AGG | + | chr3.2:36630277-36630296 | MS.gene92050:intron | 20.0% |
!! | ATGTGTATAAGATATATAGA+TGG | + | chr3.2:36629543-36629562 | MS.gene92050:CDS | 20.0% |
!! | TGAATATCATAGTAAAAAGA+TGG | - | chr3.2:36629857-36629876 | None:intergenic | 20.0% |
!! | TGTGTATAAGATATATAGAT+GGG | + | chr3.2:36629544-36629563 | MS.gene92050:CDS | 20.0% |
!!! | AAAGAGATTGAAGATTTTTA+TGG | + | chr3.2:36629257-36629276 | MS.gene92050:CDS | 20.0% |
!!! | ATGATGATAAATTGTTTTGA+TGG | + | chr3.2:36630821-36630840 | MS.gene92050:CDS | 20.0% |
!!! | TGTTTTATTTTGTTCTGATA+TGG | + | chr3.2:36630441-36630460 | MS.gene92050:intron | 20.0% |
!!! | TTCTTATAATTTGTGATTAC+AGG | + | chr3.2:36630340-36630359 | MS.gene92050:intron | 20.0% |
! | ACAAAACAAGAAATCTGATA+AGG | + | chr3.2:36629340-36629359 | MS.gene92050:CDS | 25.0% |
! | AGTAAAAAACACTAACCTAA+TGG | - | chr3.2:36630004-36630023 | None:intergenic | 25.0% |
! | ATGATTGTCAAAACCAATAA+AGG | - | chr3.2:36630486-36630505 | None:intergenic | 25.0% |
! | ATTATGAAAAAGCTAGAGAA+AGG | + | chr3.2:36631911-36631930 | MS.gene92050:intron | 25.0% |
! | CAAACTTAAATGATGTTGAT+TGG | + | chr3.2:36630201-36630220 | MS.gene92050:intron | 25.0% |
! | CAACTAGATTATTCTCTATT+CGG | + | chr3.2:36629929-36629948 | MS.gene92050:CDS | 25.0% |
! | CATAATAGTATTTGAAGGAA+AGG | - | chr3.2:36631192-36631211 | None:intergenic | 25.0% |
! | CTTTAGTCATTTCAACATTA+TGG | + | chr3.2:36631018-36631037 | MS.gene92050:intron | 25.0% |
! | GAGAATGAAAAGAAAAATCT+TGG | + | chr3.2:36630707-36630726 | MS.gene92050:intron | 25.0% |
! | TCCATGATTCTTTATTGTTA+GGG | - | chr3.2:36629214-36629233 | None:intergenic | 25.0% |
! | TCTTACTTATTTGAACTACA+CGG | + | chr3.2:36630123-36630142 | MS.gene92050:intron | 25.0% |
! | TTCCATGATTCTTTATTGTT+AGG | - | chr3.2:36629215-36629234 | None:intergenic | 25.0% |
! | TTCCTTCAAATACTATTATG+AGG | + | chr3.2:36631192-36631211 | MS.gene92050:CDS | 25.0% |
!! | AACTTTGAAAAACTTCTCAA+AGG | - | chr3.2:36631239-36631258 | None:intergenic | 25.0% |
!! | AGAAAAATTTTAGATGACTC+TGG | - | chr3.2:36631700-36631719 | None:intergenic | 25.0% |
!! | ATAACACAGGATTTTCTATT+AGG | + | chr3.2:36629291-36629310 | MS.gene92050:CDS | 25.0% |
!! | CAAAGTTTTCACAATTGATA+AGG | + | chr3.2:36631252-36631271 | MS.gene92050:CDS | 25.0% |
!! | TTCTTTGACTTAATTGGATT+TGG | - | chr3.2:36631877-36631896 | None:intergenic | 25.0% |
!! | TTTGTTTCTTCCAATTGATA+AGG | - | chr3.2:36631945-36631964 | None:intergenic | 25.0% |
!!! | AAGACATAGCTAGTATTTTT+TGG | + | chr3.2:36629891-36629910 | MS.gene92050:CDS | 25.0% |
!!! | ATTTATATTTTGAACTGCCT+AGG | + | chr3.2:36630225-36630244 | MS.gene92050:intron | 25.0% |
!!! | TCATCTAAAATTTTTCTCGA+CGG | + | chr3.2:36631703-36631722 | MS.gene92050:CDS | 25.0% |
!!! | TGATAAATTGTTTTGATGGA+AGG | + | chr3.2:36630825-36630844 | MS.gene92050:CDS | 25.0% |
AAAACACCTGGAAAACTATT+CGG | - | chr3.2:36630659-36630678 | None:intergenic | 30.0% | |
AACAAAGAAGGTTTCAAGAA+GGG | + | chr3.2:36629386-36629405 | MS.gene92050:CDS | 30.0% | |
AACAATAAATATCGGCCATT+AGG | + | chr3.2:36629986-36630005 | MS.gene92050:CDS | 30.0% | |
AATAAATGCAAAGCAAGAAG+GGG | - | chr3.2:36631155-36631174 | None:intergenic | 30.0% | |
ACCGGACAAACAATAAATAT+CGG | + | chr3.2:36629978-36629997 | MS.gene92050:CDS | 30.0% | |
AGAACGTCTTATGAAGTTAT+GGG | + | chr3.2:36629689-36629708 | MS.gene92050:CDS | 30.0% | |
CCATGATTCTTTATTGTTAG+GGG | - | chr3.2:36629213-36629232 | None:intergenic | 30.0% | |
CGTTATGTTTGTAACAAAGA+AGG | + | chr3.2:36629374-36629393 | MS.gene92050:CDS | 30.0% | |
CTCCTCATAATAGTATTTGA+AGG | - | chr3.2:36631197-36631216 | None:intergenic | 30.0% | |
CTTACTTATTTGAACTACAC+GGG | + | chr3.2:36630124-36630143 | MS.gene92050:intron | 30.0% | |
CTTCAAATACTATTATGAGG+AGG | + | chr3.2:36631195-36631214 | MS.gene92050:CDS | 30.0% | |
GAATAAATGCAAAGCAAGAA+GGG | - | chr3.2:36631156-36631175 | None:intergenic | 30.0% | |
GAATTTGAGAAACGAGTTAT+TGG | + | chr3.2:36632499-36632518 | MS.gene92050:CDS | 30.0% | |
GGTAATTATGCATATAACAC+AGG | + | chr3.2:36629278-36629297 | MS.gene92050:CDS | 30.0% | |
GTTTACTTAATCCTAACAAC+AGG | + | chr3.2:36629411-36629430 | MS.gene92050:CDS | 30.0% | |
TAAAGAATCGAACAAGTGAA+TGG | - | chr3.2:36631003-36631022 | None:intergenic | 30.0% | |
TAAATTTCAGCTGCCTTTAT+TGG | + | chr3.2:36630470-36630489 | MS.gene92050:intron | 30.0% | |
TAACAAAGAAGGTTTCAAGA+AGG | + | chr3.2:36629385-36629404 | MS.gene92050:CDS | 30.0% | |
TAAGAACTATAGTCAATCCT+AGG | - | chr3.2:36630108-36630127 | None:intergenic | 30.0% | |
TAAGATATATAGATGGGATG+TGG | + | chr3.2:36629550-36629569 | MS.gene92050:CDS | 30.0% | |
TAAGTTTGTCTCAAACCAAA+TGG | - | chr3.2:36630189-36630208 | None:intergenic | 30.0% | |
TAATAGTTAAACCATGACTC+TGG | + | chr3.2:36632309-36632328 | MS.gene92050:intron | 30.0% | |
TGAATAAATGCAAAGCAAGA+AGG | - | chr3.2:36631157-36631176 | None:intergenic | 30.0% | |
TTACTTCTCGAAATGATCTA+AGG | - | chr3.2:36629616-36629635 | None:intergenic | 30.0% | |
TTCACAAACTCAATAACAAG+TGG | - | chr3.2:36629452-36629471 | None:intergenic | 30.0% | |
TTGAAGATCTTGAAGTTCTT+AGG | + | chr3.2:36631478-36631497 | MS.gene92050:CDS | 30.0% | |
TTTAAGTCTGAAAACCGAAA+AGG | - | chr3.2:36629743-36629762 | None:intergenic | 30.0% | |
! | AAAACATAAAGTGAAAGCGT+GGG | + | chr3.2:36632378-36632397 | MS.gene92050:intron | 30.0% |
! | AGTTGCTTCTTTGACTTAAT+TGG | - | chr3.2:36631883-36631902 | None:intergenic | 30.0% |
! | GAATTTGAGTTTAATGTGAG+TGG | + | chr3.2:36632472-36632491 | MS.gene92050:intron | 30.0% |
! | GTTTTCACAATTGATAAGGT+TGG | + | chr3.2:36631256-36631275 | MS.gene92050:CDS | 30.0% |
! | TATGATGATGCCGATAATAA+GGG | + | chr3.2:36631286-36631305 | MS.gene92050:CDS | 30.0% |
! | TTAACCATGCTGTTTGTTTA+GGG | + | chr3.2:36630148-36630167 | MS.gene92050:intron | 30.0% |
! | TTATGATGATGCCGATAATA+AGG | + | chr3.2:36631285-36631304 | MS.gene92050:CDS | 30.0% |
! | TTTAACCATGCTGTTTGTTT+AGG | + | chr3.2:36630147-36630166 | MS.gene92050:intron | 30.0% |
! | TTTGGTCTTTCTTTGAACTT+TGG | - | chr3.2:36631859-36631878 | None:intergenic | 30.0% |
!! | AGACAGAAACTACTTTTGAT+TGG | + | chr3.2:36630546-36630565 | MS.gene92050:CDS | 30.0% |
!! | ATCATGATCGATTTGATGAA+AGG | + | chr3.2:36631371-36631390 | MS.gene92050:CDS | 30.0% |
!! | GCTCTTATAAATTCTAAAGC+TGG | + | chr3.2:36629656-36629675 | MS.gene92050:CDS | 30.0% |
!! | TCAGTTTTGATACAACTTAC+CGG | + | chr3.2:36629960-36629979 | MS.gene92050:CDS | 30.0% |
!!! | GACAATATGTTTTAAAGCGT+TGG | + | chr3.2:36631539-36631558 | MS.gene92050:CDS | 30.0% |
!!! | TAGTGTTTTTTACTTCTCTC+AGG | + | chr3.2:36630010-36630029 | MS.gene92050:intron | 30.0% |
AAATCCCTAAACAAACAGCA+TGG | - | chr3.2:36630155-36630174 | None:intergenic | 35.0% | |
AAGAAGAGGGTTTAATGTTG+GGG | - | chr3.2:36632420-36632439 | None:intergenic | 35.0% | |
AAGATCTTGAAGTTCTTAGG+TGG | + | chr3.2:36631481-36631500 | MS.gene92050:CDS | 35.0% | |
AATCGTCTGTGGTTTCTTAT+TGG | - | chr3.2:36630600-36630619 | None:intergenic | 35.0% | |
AATTCGTCAAAAAGAGATGG+TGG | + | chr3.2:36629778-36629797 | MS.gene92050:CDS | 35.0% | |
ACATTATGGTTCAGAGAATG+AGG | + | chr3.2:36631032-36631051 | MS.gene92050:CDS | 35.0% | |
AGAAGAAGAGGGTTTAATGT+TGG | - | chr3.2:36632422-36632441 | None:intergenic | 35.0% | |
AGCAATGACTAATTAAGGGT+TGG | + | chr3.2:36630365-36630384 | MS.gene92050:intron | 35.0% | |
AGGCTAGCAATGACTAATTA+AGG | + | chr3.2:36630360-36630379 | MS.gene92050:intron | 35.0% | |
AGTAAAAAGATGGTTTCGAG+AGG | - | chr3.2:36629847-36629866 | None:intergenic | 35.0% | |
ATATCAACTTCATCTGAGAG+TGG | + | chr3.2:36629131-36629150 | MS.gene92050:CDS | 35.0% | |
ATCATGATCTTCAAACCTTG+GGG | - | chr3.2:36631359-36631378 | None:intergenic | 35.0% | |
ATGTCGTATGTTTGAGAACA+GGG | + | chr3.2:36631435-36631454 | MS.gene92050:CDS | 35.0% | |
CATTATGGTTCAGAGAATGA+GGG | + | chr3.2:36631033-36631052 | MS.gene92050:CDS | 35.0% | |
CCCCTAACAATAAAGAATCA+TGG | + | chr3.2:36629210-36629229 | MS.gene92050:CDS | 35.0% | |
CGAGAAGTAAATGAAGTTCA+AGG | + | chr3.2:36629626-36629645 | MS.gene92050:CDS | 35.0% | |
CTATTGGTGAAACATCTTCT+GGG | + | chr3.2:36631818-36631837 | MS.gene92050:CDS | 35.0% | |
CTTGCTTTGCATTTATTCAC+AGG | + | chr3.2:36631158-36631177 | MS.gene92050:CDS | 35.0% | |
GAAAACATAAAGTGAAAGCG+TGG | + | chr3.2:36632377-36632396 | MS.gene92050:intron | 35.0% | |
GAAAGAAAAACCTGAGGAAA+TGG | + | chr3.2:36629475-36629494 | MS.gene92050:CDS | 35.0% | |
GAAAGTGAAAGAAAAACCTG+AGG | + | chr3.2:36629469-36629488 | MS.gene92050:CDS | 35.0% | |
GAAGAAGAGGGTTTAATGTT+GGG | - | chr3.2:36632421-36632440 | None:intergenic | 35.0% | |
GACAATTCGTCAAAAAGAGA+TGG | + | chr3.2:36629775-36629794 | MS.gene92050:CDS | 35.0% | |
GAGAACGTCTTATGAAGTTA+TGG | + | chr3.2:36629688-36629707 | MS.gene92050:CDS | 35.0% | |
GATCATGATCTTCAAACCTT+GGG | - | chr3.2:36631360-36631379 | None:intergenic | 35.0% | |
GCCGATATTTATTGTTTGTC+CGG | - | chr3.2:36629982-36630001 | None:intergenic | 35.0% | |
GGCAGAAATTCCTTATCAAT+TGG | + | chr3.2:36631932-36631951 | MS.gene92050:intron | 35.0% | |
GGCTAGCAATGACTAATTAA+GGG | + | chr3.2:36630361-36630380 | MS.gene92050:intron | 35.0% | |
GTAAAAAGATGGTTTCGAGA+GGG | - | chr3.2:36629846-36629865 | None:intergenic | 35.0% | |
TATTGGTGAAACATCTTCTG+GGG | + | chr3.2:36631819-36631838 | MS.gene92050:CDS | 35.0% | |
TCCAAAACATCAACATTGGA+AGG | - | chr3.2:36631313-36631332 | None:intergenic | 35.0% | |
TCGTTAGAAGAAGAAGAAGA+GGG | - | chr3.2:36632433-36632452 | None:intergenic | 35.0% | |
TCTTATGAAGTTATGGGTCA+AGG | + | chr3.2:36629695-36629714 | MS.gene92050:CDS | 35.0% | |
TCTTCAAAAGTAGCTGCTAT+TGG | + | chr3.2:36631802-36631821 | MS.gene92050:CDS | 35.0% | |
TCTTTCTTTGAACTTTGGTG+CGG | - | chr3.2:36631854-36631873 | None:intergenic | 35.0% | |
TGACTAATTAAGGGTTGGAT+TGG | + | chr3.2:36630370-36630389 | MS.gene92050:intron | 35.0% | |
TGCATCCAAAACATCAACAT+TGG | - | chr3.2:36631317-36631336 | None:intergenic | 35.0% | |
TGTTCTTGAAGCTGGAAAAA+AGG | + | chr3.2:36631726-36631745 | MS.gene92050:CDS | 35.0% | |
! | AACATCAAGGTCAACTGTTT+TGG | + | chr3.2:36632561-36632580 | MS.gene92050:CDS | 35.0% |
! | ACATCAAGGTCAACTGTTTT+GGG | + | chr3.2:36632562-36632581 | MS.gene92050:CDS | 35.0% |
! | AGAGATGATGAAGCTTTATC+GGG | + | chr3.2:36631967-36631986 | MS.gene92050:intron | 35.0% |
! | AGCTGGAATATATTTGAAGC+TGG | + | chr3.2:36629508-36629527 | MS.gene92050:CDS | 35.0% |
! | AGTTTTCCAGGTGTTTTTCA+TGG | + | chr3.2:36630662-36630681 | MS.gene92050:intron | 35.0% |
! | ATGATGATGCCGATAATAAG+GGG | + | chr3.2:36631287-36631306 | MS.gene92050:CDS | 35.0% |
! | ATTTAGTTTACGCATTGCTG+AGG | + | chr3.2:36630311-36630330 | MS.gene92050:intron | 35.0% |
! | CATTCTTTGAAGACAATACC+TGG | + | chr3.2:36631517-36631536 | MS.gene92050:CDS | 35.0% |
! | GAGAGATGATGAAGCTTTAT+CGG | + | chr3.2:36631966-36631985 | MS.gene92050:intron | 35.0% |
! | GTTTTCCAGGTGTTTTTCAT+GGG | + | chr3.2:36630663-36630682 | MS.gene92050:intron | 35.0% |
! | TCAATTCCGAATAGTTTTCC+AGG | + | chr3.2:36630650-36630669 | MS.gene92050:intron | 35.0% |
! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr3.2:36630962-36630981 | MS.gene92050:intron | 35.0% |
!! | CGCTTTAAAACATATTGTCC+AGG | - | chr3.2:36631538-36631557 | None:intergenic | 35.0% |
!! | CTTTCTAAAGGTATTCGTAC+AGG | + | chr3.2:36631763-36631782 | MS.gene92050:CDS | 35.0% |
!!! | GCTACTTTTGAAGACTTAGA+TGG | - | chr3.2:36631796-36631815 | None:intergenic | 35.0% |
!!! | GCTAGTATTTTTTGGTCAGA+TGG | + | chr3.2:36629899-36629918 | MS.gene92050:CDS | 35.0% |
!!! | TTTTTCATGGGCTTTGTTCA+TGG | + | chr3.2:36630675-36630694 | MS.gene92050:intron | 35.0% |
AATCGAACAAGTGAATGGTC+TGG | - | chr3.2:36630998-36631017 | None:intergenic | 40.0% | |
ACACTAGTTATCCAGAGTCA+TGG | - | chr3.2:36632323-36632342 | None:intergenic | 40.0% | |
ACAGACGATTTATACAGACC+AGG | + | chr3.2:36630610-36630629 | MS.gene92050:CDS | 40.0% | |
ATGAGGAGGACACAACAAAA+GGG | + | chr3.2:36631209-36631228 | MS.gene92050:CDS | 40.0% | |
ATTGGAAGGCCCCTTATTAT+CGG | - | chr3.2:36631299-36631318 | None:intergenic | 40.0% | |
ATTTCAGCTTATCGACAGAC+GGG | - | chr3.2:36631579-36631598 | None:intergenic | 40.0% | |
CACAAACACAGACAACATCA+AGG | + | chr3.2:36632548-36632567 | MS.gene92050:CDS | 40.0% | |
CACTTTCCGTAAAAACTGGA+GGG | + | chr3.2:36632343-36632362 | MS.gene92050:intron | 40.0% | |
CAGTACAATTTGAACTGCCT+AGG | + | chr3.2:36630088-36630107 | MS.gene92050:intron | 40.0% | |
CATGTCGTATGTTTGAGAAC+AGG | + | chr3.2:36631434-36631453 | MS.gene92050:CDS | 40.0% | |
CGATCATGATCTTCAAACCT+TGG | - | chr3.2:36631361-36631380 | None:intergenic | 40.0% | |
CTGAAATCGACTGTCAATAG+CGG | + | chr3.2:36631592-36631611 | MS.gene92050:CDS | 40.0% | |
CTTACGCAAATCGTATGCAT+TGG | + | chr3.2:36630879-36630898 | MS.gene92050:intron | 40.0% | |
GAAAAACCTGAGGAAATGGT+TGG | + | chr3.2:36629479-36629498 | MS.gene92050:CDS | 40.0% | |
GAGGAGTTGCTTCTTTCTAA+AGG | + | chr3.2:36631751-36631770 | MS.gene92050:CDS | 40.0% | |
GATTTCAGCTTATCGACAGA+CGG | - | chr3.2:36631580-36631599 | None:intergenic | 40.0% | |
GCATACGATTTGCGTAAGTT+TGG | - | chr3.2:36630877-36630896 | None:intergenic | 40.0% | |
GCTATTGGTGAAACATCTTC+TGG | + | chr3.2:36631817-36631836 | MS.gene92050:CDS | 40.0% | |
GTCAAGTCATAGTTTACAGC+TGG | + | chr3.2:36630914-36630933 | MS.gene92050:intron | 40.0% | |
GTCGTTAGAAGAAGAAGAAG+AGG | - | chr3.2:36632434-36632453 | None:intergenic | 40.0% | |
TATGAGGAGGACACAACAAA+AGG | + | chr3.2:36631208-36631227 | MS.gene92050:CDS | 40.0% | |
TCACACAAGACAAAATGCCT+AGG | - | chr3.2:36630245-36630264 | None:intergenic | 40.0% | |
TCACTTTCCGTAAAAACTGG+AGG | + | chr3.2:36632342-36632361 | MS.gene92050:intron | 40.0% | |
TGGTCTGTATAAATCGTCTG+TGG | - | chr3.2:36630611-36630630 | None:intergenic | 40.0% | |
TGTCGTATGTTTGAGAACAG+GGG | + | chr3.2:36631436-36631455 | MS.gene92050:CDS | 40.0% | |
TTACAACCAACCATTTCCTC+AGG | - | chr3.2:36629488-36629507 | None:intergenic | 40.0% | |
TTCAAGAAAACGTTTCCCCA+AGG | + | chr3.2:36631341-36631360 | MS.gene92050:CDS | 40.0% | |
TTGATATCGTTGTGCTTGAG+TGG | - | chr3.2:36631629-36631648 | None:intergenic | 40.0% | |
TTTGAAGACTTAGATGGCGT+CGG | - | chr3.2:36631790-36631809 | None:intergenic | 40.0% | |
! | AGGGGTGTACTTGTTTACAA+CGG | - | chr3.2:36631137-36631156 | None:intergenic | 40.0% |
! | ATTTTCTCGCTTCTGCCATT+TGG | + | chr3.2:36630171-36630190 | MS.gene92050:intron | 40.0% |
! | GAAATGGTTGGTTGTAAAGC+TGG | + | chr3.2:36629491-36629510 | MS.gene92050:CDS | 40.0% |
! | GAATGCTCTGGTTTGTGTAA+TGG | - | chr3.2:36629587-36629606 | None:intergenic | 40.0% |
! | GAGATGATGAAGCTTTATCG+GGG | + | chr3.2:36631968-36631987 | MS.gene92050:intron | 40.0% |
! | GCCTTCCAATGTTGATGTTT+TGG | + | chr3.2:36631309-36631328 | MS.gene92050:CDS | 40.0% |
! | GTGTTACCCTCCAGTTTTTA+CGG | - | chr3.2:36632352-36632371 | None:intergenic | 40.0% |
! | TCATGCTGAGTTGGACTTTA+AGG | + | chr3.2:36631060-36631079 | MS.gene92050:CDS | 40.0% |
!! | GTGTCACTTTCCGTAAAAAC+TGG | + | chr3.2:36632339-36632358 | MS.gene92050:intron | 40.0% |
!! | TATGCATTGGTCTTCAGCTT+GGG | + | chr3.2:36630892-36630911 | MS.gene92050:intron | 40.0% |
!!! | CATCGCAAGAGTGTTTTGTT+TGG | + | chr3.2:36630503-36630522 | MS.gene92050:CDS | 40.0% |
AACACAATAACGCACTAGCC+TGG | - | chr3.2:36630631-36630650 | None:intergenic | 45.0% | |
CAAAGCCCATGAAAAACACC+TGG | - | chr3.2:36630671-36630690 | None:intergenic | 45.0% | |
GAAGGTCTACCTCAGACTTT+AGG | + | chr3.2:36630843-36630862 | MS.gene92050:intron | 45.0% | |
GAAGTTATGGGTCAAGGAGT+TGG | + | chr3.2:36629701-36629720 | MS.gene92050:CDS | 45.0% | |
GAGGGATAATCATGCTGAGT+TGG | + | chr3.2:36631051-36631070 | MS.gene92050:CDS | 45.0% | |
TGAAGCTGGAAAAAAGGCAG+AGG | + | chr3.2:36631732-36631751 | MS.gene92050:CDS | 45.0% | |
TTGAAGACTTAGATGGCGTC+GGG | - | chr3.2:36631789-36631808 | None:intergenic | 45.0% | |
! | CGTCAAAAAGAGATGGTGGT+TGG | + | chr3.2:36629782-36629801 | MS.gene92050:CDS | 45.0% |
! | GCACGGAGAATCTTCCTTTT+CGG | + | chr3.2:36629726-36629745 | MS.gene92050:CDS | 45.0% |
! | TCTTTGAACTTTGGTGCGGT+GGG | - | chr3.2:36631850-36631869 | None:intergenic | 45.0% |
! | TGAAGCTTTATCGGGGATTG+TGG | + | chr3.2:36631975-36631994 | MS.gene92050:intron | 45.0% |
! | TTCTTTGAACTTTGGTGCGG+TGG | - | chr3.2:36631851-36631870 | None:intergenic | 45.0% |
!! | GTATGCATTGGTCTTCAGCT+TGG | + | chr3.2:36630891-36630910 | MS.gene92050:intron | 45.0% |
ATCCCAACAGTCAGCTGATG+CGG | + | chr3.2:36631110-36631129 | MS.gene92050:CDS | 50.0% | |
CTAAGGTAACGCGAATGCTC+TGG | - | chr3.2:36629599-36629618 | None:intergenic | 50.0% | |
GACAAGCCACCTAAAGTCTG+AGG | - | chr3.2:36630855-36630874 | None:intergenic | 50.0% | |
GGTCTACCTCAGACTTTAGG+TGG | + | chr3.2:36630846-36630865 | MS.gene92050:intron | 50.0% | |
GTTATGGGTCAAGGAGTTGG+AGG | + | chr3.2:36629704-36629723 | MS.gene92050:CDS | 50.0% | |
! | TCTGCTGTTGGCCTGTTGTT+AGG | - | chr3.2:36629425-36629444 | None:intergenic | 50.0% |
!! | ACAAGTGGACTGTCTGCTGT+TGG | - | chr3.2:36629437-36629456 | None:intergenic | 50.0% |
!! | TGGGCTTTGTTCATGGCACA+TGG | + | chr3.2:36630682-36630701 | MS.gene92050:intron | 50.0% |
CTCGACGGTGTTCTTGAAGC+TGG | + | chr3.2:36631718-36631737 | MS.gene92050:CDS | 55.0% | |
GACCGCATCAGCTGACTGTT+GGG | - | chr3.2:36631115-36631134 | None:intergenic | 55.0% | |
GGACCGCATCAGCTGACTGT+TGG | - | chr3.2:36631116-36631135 | None:intergenic | 60.0% | |
GGGTCAAGGAGTTGGAGGCA+CGG | + | chr3.2:36629709-36629728 | MS.gene92050:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 36629122 | 36632594 | 36629122 | ID=MS.gene92050 |
chr3.2 | mRNA | 36629122 | 36632594 | 36629122 | ID=MS.gene92050.t1;Parent=MS.gene92050 |
chr3.2 | exon | 36629122 | 36630007 | 36629122 | ID=MS.gene92050.t1.exon1;Parent=MS.gene92050.t1 |
chr3.2 | CDS | 36629122 | 36630007 | 36629122 | ID=cds.MS.gene92050.t1;Parent=MS.gene92050.t1 |
chr3.2 | exon | 36630480 | 36630635 | 36630480 | ID=MS.gene92050.t1.exon2;Parent=MS.gene92050.t1 |
chr3.2 | CDS | 36630480 | 36630635 | 36630480 | ID=cds.MS.gene92050.t1;Parent=MS.gene92050.t1 |
chr3.2 | exon | 36630708 | 36630846 | 36630708 | ID=MS.gene92050.t1.exon3;Parent=MS.gene92050.t1 |
chr3.2 | CDS | 36630708 | 36630846 | 36630708 | ID=cds.MS.gene92050.t1;Parent=MS.gene92050.t1 |
chr3.2 | exon | 36631024 | 36631907 | 36631024 | ID=MS.gene92050.t1.exon4;Parent=MS.gene92050.t1 |
chr3.2 | CDS | 36631024 | 36631907 | 36631024 | ID=cds.MS.gene92050.t1;Parent=MS.gene92050.t1 |
chr3.2 | exon | 36632473 | 36632594 | 36632473 | ID=MS.gene92050.t1.exon5;Parent=MS.gene92050.t1 |
chr3.2 | CDS | 36632473 | 36632594 | 36632473 | ID=cds.MS.gene92050.t1;Parent=MS.gene92050.t1 |
Gene Sequence |
Protein sequence |