AlfalfaGEDB | MS.gene92139

M. sativa cultivar XinJiangDaYe / MS.gene92139

KEGG: K09060
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24 PF07777.14 PF16596.8

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92139.t1	XP_013444711.1	95.3	422	20	0	1	422	1	422	5.60E-174	620.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92139.t1	Q99089	43.3	430	215	10	1	421	1	410	6.4e-70	266.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92139.t1	A0A072TNE8	95.3	422	20	0	1	422	1	422	4.0e-174	620.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene92139.t1	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92139.t1	MTR_8g028150	95.498	422	19	0	1	422	1	422	0.0	830
MS.gene92139.t1	MTR_7g116890	71.329	429	110	7	1	421	1	424	0.0	595
MS.gene92139.t1	MTR_5g028850	35.751	386	198	15	1	347	1	375	9.77e-47	166
MS.gene92139.t1	MTR_5g028850	35.584	385	198	15	1	347	1	373	2.60e-45	162
MS.gene92139.t1	MTR_8g077950	35.150	367	180	13	1	348	1	328	2.86e-40	147
MS.gene92139.t1	MTR_8g070820	32.759	406	200	16	1	354	1	385	6.23e-40	147
MS.gene92139.t1	MTR_8g077950	35.150	367	178	13	1	348	1	326	2.50e-39	144
MS.gene92139.t1	MTR_8g070820	33.505	388	195	16	1	354	1	359	3.93e-38	142
MS.gene92139.t1	MTR_8g077950	33.022	321	157	13	1	302	1	282	6.80e-24	101
MS.gene92139.t1	MTR_8g077950	46.667	135	66	3	215	348	139	268	7.45e-23	97.8

Showing 1 to 10 of 10 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92139.t1	AT2G46270	52.804	428	148	16	1	421	1	381	5.14e-120	354
MS.gene92139.t1	AT2G46270	52.804	428	148	16	1	421	1	381	5.14e-120	354
MS.gene92139.t1	AT2G46270	50.701	428	134	15	1	421	1	358	3.09e-109	326
MS.gene92139.t1	AT2G46270	50.701	428	134	15	1	421	1	358	3.09e-109	326
MS.gene92139.t1	AT4G01120	44.028	427	167	15	1	422	1	360	3.21e-85	265
MS.gene92139.t1	AT2G35530	35.530	349	170	13	36	347	42	372	1.98e-39	146
MS.gene92139.t1	AT4G36730	34.000	350	167	13	1	348	1	288	1.09e-35	134
MS.gene92139.t1	AT4G36730	34.000	350	169	13	1	348	1	290	1.43e-34	130
MS.gene92139.t1	AT1G32150	35.325	385	188	17	1	347	1	362	1.88e-34	132
MS.gene92139.t1	AT5G15830	40.000	105	57	3	251	355	47	145	6.78e-11	61.6

Showing 1 to 10 of 10 entries

Previous1Next

Find 116 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACAGCTGGTGAAGA+TGG	0.461400	8.3:-65496083	None:intergenic
AAACTTACGATGGCAACGGC+AGG	0.589342	8.3:-65495779	None:intergenic
AAAGCTGGAAAACACTCAAC+TGG	0.369633	8.3:+65498255	MS.gene92139:CDS
AAATCCTAGAGCTAATGCTG+TGG	0.699726	8.3:+65498456	MS.gene92139:CDS
AAGATCCAGGCTTAGGAAGC+AGG	0.442737	8.3:+65497421	MS.gene92139:CDS
AAGCGATGGCAACACTACAG+GGG	0.742066	8.3:+65496512	MS.gene92139:CDS
AAGCTGGAAAACACTCAACT+GGG	0.626485	8.3:+65498256	MS.gene92139:CDS
AATGCTGACAGTGCTGAGCG+TGG	0.592809	8.3:+65496313	MS.gene92139:CDS
ACAAGGAAAAGAAGCCGGGA+TGG	0.577909	8.3:+65496658	MS.gene92139:CDS
ACAAGGTTGTGGAGCACTGG+TGG	0.565799	8.3:-65497168	None:intergenic

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACGAAAACTCCATGTATAA+AGG	-	chr8.3:65494830-65494849	None:intergenic	30.0%
AATAAGCTGATAAGAGCTTA+TGG	-	chr8.3:65497610-65497629	None:intergenic	30.0%
AATGGGGGAAATTTCAAATA+AGG	-	chr8.3:65495286-65495305	None:intergenic	30.0%
AATTTGAGAGCCAATCAAAA+TGG	-	chr8.3:65495304-65495323	None:intergenic	30.0%
ACTGACACTAAAGTAATTCT+TGG	+	chr8.3:65497328-65497347	MS.gene92139:intron	30.0%
AGATAAACATTCAACCACAA+AGG	-	chr8.3:65496004-65496023	None:intergenic	30.0%
ATATAGGGGTCAAATTCAAA+TGG	+	chr8.3:65496050-65496069	MS.gene92139:intron	30.0%
ATCATGCATTAACAATTGGA+TGG	-	chr8.3:65496812-65496831	None:intergenic	30.0%
ATGATGATATATCAACAGTG+TGG	+	chr8.3:65496467-65496486	MS.gene92139:intron	30.0%
ATTACTTGAATAGATGGAGA+AGG	+	chr8.3:65496987-65497006	MS.gene92139:intron	30.0%

Showing 1 to 10 of 270 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	65494596	65498489	65494596	ID=MS.gene92139
chr8.3	mRNA	65494596	65498489	65494596	ID=MS.gene92139.t1;Parent=MS.gene92139
chr8.3	exon	65494596	65494658	65494596	ID=MS.gene92139.t1.exon1;Parent=MS.gene92139.t1
chr8.3	CDS	65494596	65494658	65494596	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65494740	65494802	65494740	ID=MS.gene92139.t1.exon2;Parent=MS.gene92139.t1
chr8.3	CDS	65494740	65494802	65494740	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65495486	65495581	65495486	ID=MS.gene92139.t1.exon3;Parent=MS.gene92139.t1
chr8.3	CDS	65495486	65495581	65495486	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65495710	65495793	65495710	ID=MS.gene92139.t1.exon4;Parent=MS.gene92139.t1
chr8.3	CDS	65495710	65495793	65495710	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65496056	65496097	65496056	ID=MS.gene92139.t1.exon5;Parent=MS.gene92139.t1
chr8.3	CDS	65496056	65496097	65496056	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65496199	65496359	65496199	ID=MS.gene92139.t1.exon6;Parent=MS.gene92139.t1
chr8.3	CDS	65496199	65496359	65496199	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65496485	65496533	65496485	ID=MS.gene92139.t1.exon7;Parent=MS.gene92139.t1
chr8.3	CDS	65496485	65496533	65496485	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65496649	65496697	65496649	ID=MS.gene92139.t1.exon8;Parent=MS.gene92139.t1
chr8.3	CDS	65496649	65496697	65496649	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65497000	65497220	65497000	ID=MS.gene92139.t1.exon9;Parent=MS.gene92139.t1
chr8.3	CDS	65497000	65497220	65497000	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65497365	65497442	65497365	ID=MS.gene92139.t1.exon10;Parent=MS.gene92139.t1
chr8.3	CDS	65497365	65497442	65497365	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65497874	65497999	65497874	ID=MS.gene92139.t1.exon11;Parent=MS.gene92139.t1
chr8.3	CDS	65497874	65497999	65497874	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1
chr8.3	exon	65498253	65498489	65498253	ID=MS.gene92139.t1.exon12;Parent=MS.gene92139.t1
chr8.3	CDS	65498253	65498489	65498253	ID=cds.MS.gene92139.t1;Parent=MS.gene92139.t1

Gene Sequence

>MS.gene92139

ATGGGAAACAGCGAGGATGGAAAATCCGTTAAGATTGAAAGGCCTTCTTCACCTGTAACAACTGTAAGCATAGTGTATGCCCATGTTAAAACATTTTATAATGCATGTAGCTAAATACTATTATTACTTTCTTGTTAATAACAGGAACAGACCAATCAAGCCAACCCGTCGAATGTTCACGTCTATCCTGATTGGGCTGCCATGCAGGTTACCAACCTTTTGCTTTCATTTCCTTTATACATGGAGTTTTCGTTTTTGTTATCCGGTTCACGTGTAATTGCTTTGAAACTTTAGTAATTGAAGTATATAGTATAATATAAAAATAATAATAATATTTCCATAAAAAGTAGGATTAATAGATATACACGGACAATGTAAATTTATTTTTACACTGGCAATCAATCATAACCGTTAGATCATTAAGTTTTTTTACTTTAATCATATAAATCGTAAAAGTTGCACAAATGATGGTTTGTGATTGGTTAACATTGTAAAAAGTCTTACATTGTCGGCGCATCAAAATTAATCTTGAAAAAGTTGAGTGCTAGCTACTTTACCTTTTGAAGACTTTTATGATCTACATATTGATATTATAAACCAATGTGGAGTTGTCTTCATCGTCTTTGTTTATACCGTGCTTCAATGTCAGTAATCTGCTCCTACATATTTTCATGAAAACTTTAGCTACCTTATTTGAAATTTCCCCCATTTTGATTGGCTCTCAAATTCGGCATAGTGTCGCAACTTGCAACTGGATTTGATAATCTGCGGGGAACGGACTATGATATCTATGATGGGATTTACATCGGTCCCAGATTGCTTTCACTTTTGAAAAGAATTGCCCATTAAAAACTACTTTTGGTGATTTAAAGTTTCTGTTATATCTTCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATGCTCCTCACCCATACATGTGGGGACCACCACAGGTAGTGCTCCATAGGTTCATTTGCTTTGTTATAACATTGATATTTTCGTGTCTATTTCTGTGTTGCTGTCCTTGTGTACATCCTTGCTCGAAGGGATGAATAATTTGCCAACTTATTGTTTCTTTCAGCCTATGATGCATCCATATGGGCCGCCATATGCACCACCATTTTATTCACATGGAGGGGTTTATACTCATCCTGCCGTTGCCATCGTAAGTTTACATTCTCACATTATTGGCTTATGCTTCTCTCACACGCTGAAATTTATGTTTATTTTTGTTTAGACTATTGTAAATTAGTTGATTTAAGTTACACTTTAATTTATGAATATGGATTATCAAAGGTGATTTTTATACTGGCAAATTTTTACTGTTATTACTATTAACTTCTTCGTTCTTTGATGTACTTAATGTACCAAACCTTTGTGGTTGAATGTTTATCTATGTACTTATGAATTATATTGGTAAAATATAGGGGTCAAATTCAAATGGTCAAGGAATTCCATCTTCACCAGCTGTAAGTTTTAATTTTTTCTGAGATCACATCAAAATTCCGAATCTTTAGATGCACTGAATATTGTAAATTATGATGGATTTGACCTGGGGGAAACTATTCAGGCTGGGACTCCTACAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATGGCAATGCTGACAGTGCTGAGCGTGGGGCGGAAAACCGGCTATCACGGAGGTTTGTTCTATAGGATGATTACCAGAATTAACTGCACTTCCTATGTTTCCTTGCTCTACTAGTTTGTTGCTCTATTAGGTTCGTGTGGTGGATAACTGAATAATTTGATGATGATATATCAACAGTGTGGATACTGAGGGTTCCAGCGATGGAAGCGATGGCAACACTACAGGGGTGAGAAATTTCTGGCTATTATAATTTTTTCTCGGTTGTGTACACTAACAGTCTGTCTTATTTATAATGACCCGGAAAGTTGAAGAATGAAAATGTTTGCCAATGTTATGCACAGACCAATGGAACAAGGAAAAGAAGCCGGGATGGGACACCAACAACCACTGGTATGATAAACAATAATACTTGTTCTAGATTACAAATATACTTCTGGTGTCATGTCATGACTGTAACCATGGTGTCAACAATCCATTGAGTATGATCTTGATAAATAAATACCATCCAATTGTTAATGCATGATAATGTGAAATTACCATGCTCTTAAATTTCTGATTAATTTGAATTATTTGATACCAAGACTGGCACCTCGTTTGAGAGTTAATTGCATTCAATTTTTTTGGTGTCATATGGATGCATTTATCGATAAATCGTTATCCACTAGTAACTAAGGTATTAATTACTTGAATAGATGGAGAAGGGAAAACTGAGATGCAAGACAGTCAAGTTTCCAAAGAGACTGCTGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAAAATGGTTGGACCTGTACTTTCTTCAGCTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGCTCCACAACCTTGTGGAGTTTTGCCTCCTGAAACCTGGATGCAGGTACTGTAAGATTTTAGTTCTACTAATGGTTCATTTCTCACATCTAGTACATTAGAGATTCTTTTGAATCACACAACAATAATGCGGCATCCTCATCCTCATCTTTTACTGACACTAAAGTAATTCTTGGTCTGAATTCCTTAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGAAGCAGGTATGATTTGTTGCAAATTTGCAATTTTTGTTTCAAGTGTCCGTGTTTTTTTTAATTGTCACGTGTTTTTATGGGTTTTTTTGGATTGGCTTATTTGAGCTTATCAACTAACAAACACATGTGAGACTGTTCGAAAGAGCATATAGAAACAGCTTATGGCATGGCCATAAGCTCTTATCAGCTTATTTCCATAAGCTCACCAGGATAGTTTATGAAAACAAGTTATAGAATATGTAAACAATTTGAATTTAATTTATCTTTTGCTACAATAGTTTATACATAAACACTTGTATGATAAACACTTATGCTACAAGCACTCAATTACGTTGTTTATCCAAACACGGCCTTGATGCATGTACCTATAGCCCTCGAAAGAAAATGTTCTCACAAAAGGAAAGTTCATGACAAACGTTCTTATCTCCTCTATACAGGCCGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCTGAGAATTTGGCGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGCGAAGCTGAAGATTGAAAATGCTACATTAAAGGTAATGCATACATAAAATTATTTATATCTTGGCATTTCATAGGCTACAAAGCATGGACACAGACACTGGATACAACATTGACACATCAACACCGTTAATAATTTGACTAAATAGAATAATTAAATGTAACTACAAATGTCAATGTCATGCTGGTGTCAGACACATGACATGACACCTTCAATATGAAGCGTCGCTGCTACATAGTTCATAATTGCTACTTTATGATACTGAGTATAGATAATTTTGACTTCAGGAAAAGCTGGAAAACACTCAACTGGGACAAACAGAAGAGATAATTTTGAACAGCATTGACGAGAGGGCTACACCTGTAAGTACAGAAAACTTACTGTCAAGAGTTGATAATTCCAATTCTGATGATAGAGCTGCAGAGGAAGAAAATGGTTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCGTCAACTACTTGACACAAATCCTAGAGCTAATGCTGTGGCAGCTAGTTGA

Protein sequence

>MS.gene92139.t1

MGNSEDGKSVKIERPSSPVTTEQTNQANPSNVHVYPDWAAMQAYYGQRVNIPPYFNSAAAPGHAPHPYMWGPPQPMMHPYGPPYAPPFYSHGGVYTHPAVAIGSNSNGQGIPSSPAAGTPTSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNADSAERGAENRLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKTEMQDSQVSKETAASKKTVSVIATSAAEKMVGPVLSSAMTTSLELRNPSPISTSAPQPCGVLPPETWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIENATLKEKLENTQLGQTEEIILNSIDERATPVSTENLLSRVDNSNSDDRAAEEENGFCENKPNSGAKLRQLLDTNPRANAVAAS