AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92183

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92183.t1 MTR_0558s0020 78.355 231 26 1 1 207 66 296 2.65e-129 384
MS.gene92183.t1 MTR_6g090505 73.418 237 39 1 1 213 1 237 4.19e-119 360
MS.gene92183.t1 MTR_6g090505 67.647 102 6 2 308 407 230 306 2.46e-34 135
MS.gene92183.t1 MTR_6g090505 75.510 49 12 0 479 527 314 362 3.21e-11 65.9
MS.gene92183.t1 MTR_1g083640 78.431 204 20 1 1 180 81 284 2.90e-112 340
MS.gene92183.t1 MTR_8g446020 69.737 228 45 1 4 207 29 256 2.89e-108 328
MS.gene92183.t1 MTR_0337s0060 58.228 316 32 4 359 671 21 239 2.83e-107 325
MS.gene92183.t1 MTR_0337s0040 66.146 192 41 1 4 171 30 221 2.44e-82 260
MS.gene92183.t1 MTR_2g014100 72.674 172 23 1 1 148 74 245 4.66e-82 260
MS.gene92183.t1 MTR_3g028680 80.132 151 27 1 530 677 1 151 1.47e-78 249
MS.gene92183.t1 MTR_3g008240 85.075 134 20 0 1 134 66 199 2.11e-77 246
MS.gene92183.t1 MTR_4g040430 84.328 134 17 1 1 134 65 194 1.09e-75 241
MS.gene92183.t1 MTR_2g067090 77.027 148 31 1 533 677 99 246 1.16e-69 229
MS.gene92183.t1 MTR_4g133495 62.431 181 42 2 488 665 88 245 2.60e-66 219
MS.gene92183.t1 MTR_4g133340 62.431 181 42 2 488 665 88 245 2.60e-66 219
MS.gene92183.t1 MTR_1g055240 71.127 142 17 1 27 144 3 144 1.20e-63 208
MS.gene92183.t1 MTR_0019s0290 66.447 152 27 1 18 145 9 160 7.05e-63 206
MS.gene92183.t1 MTR_5g071590 80.583 103 20 0 1 103 78 180 4.30e-57 192
MS.gene92183.t1 MTR_1281s0010 80.952 63 12 0 1 63 47 109 3.02e-29 112
MS.gene92183.t1 MTR_6g051425 30.403 273 138 7 21 253 64 324 2.65e-26 110
MS.gene92183.t1 MTR_2g067130 60.811 74 23 2 607 677 46 116 2.42e-17 80.1
MS.gene92183.t1 MTR_0337s0050 75.000 36 9 0 171 206 14 49 1.28e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92183.t1 AT4G38180 26.531 588 334 12 20 577 118 637 1.39e-59 214
MS.gene92183.t1 AT4G15090 26.151 543 328 10 139 665 224 709 3.11e-56 205
MS.gene92183.t1 AT4G15090 26.151 543 328 10 139 665 224 709 3.11e-56 205
MS.gene92183.t1 AT4G15090 26.151 543 328 10 139 665 224 709 3.11e-56 205
MS.gene92183.t1 AT4G15090 26.151 543 328 10 139 665 224 709 3.11e-56 205
MS.gene92183.t1 AT4G15090 26.151 543 328 10 139 665 224 709 3.11e-56 205
MS.gene92183.t1 AT2G27110 26.541 584 357 15 63 631 108 634 5.23e-51 191
MS.gene92183.t1 AT2G27110 26.541 584 357 15 63 631 108 634 5.23e-51 191
MS.gene92183.t1 AT2G27110 26.454 533 334 12 102 631 12 489 2.17e-50 187
MS.gene92183.t1 AT3G22170 22.576 629 405 14 5 620 100 659 3.17e-47 179
MS.gene92183.t1 AT3G22170 22.576 629 405 14 5 620 100 659 3.17e-47 179
MS.gene92183.t1 AT1G76320 24.765 638 374 18 19 631 41 597 7.86e-47 176
MS.gene92183.t1 AT1G76320 24.765 638 374 18 19 631 41 597 1.63e-46 176
MS.gene92183.t1 AT1G76320 24.765 638 374 18 19 631 41 597 1.85e-46 176
MS.gene92183.t1 AT1G76320 24.765 638 374 18 19 631 41 597 1.85e-46 176
MS.gene92183.t1 AT3G06250 24.281 556 332 12 20 573 235 703 3.77e-46 176
MS.gene92183.t1 AT3G06250 24.281 556 332 12 20 573 235 703 3.77e-46 176
MS.gene92183.t1 AT3G06250 24.281 556 332 12 20 573 235 703 3.77e-46 176
MS.gene92183.t1 AT4G38170 25.349 430 263 11 147 573 24 398 3.30e-44 167
MS.gene92183.t1 AT5G18960 26.484 438 254 11 143 573 351 727 3.37e-41 161
MS.gene92183.t1 AT5G18960 26.484 438 254 11 143 573 351 727 3.37e-41 161
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 3.78e-41 160
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 4.71e-41 160
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 4.71e-41 160
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 5.31e-41 160
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 5.31e-41 160
MS.gene92183.t1 AT2G32250 24.848 656 387 18 5 655 68 622 5.31e-41 160
MS.gene92183.t1 AT2G32250 24.733 655 389 17 5 655 27 581 5.39e-41 160
MS.gene92183.t1 AT2G32250 24.733 655 389 17 5 655 27 581 5.43e-41 160
MS.gene92183.t1 AT1G10240 24.735 566 326 16 43 571 102 604 4.51e-37 148
MS.gene92183.t1 AT1G10240 24.735 566 326 16 43 571 102 604 4.51e-37 148
MS.gene92183.t1 AT5G28530 23.740 615 343 20 5 572 84 619 1.13e-33 137
MS.gene92183.t1 AT1G80010 24.829 439 278 11 139 573 270 660 7.33e-33 135
MS.gene92183.t1 AT5G28530 23.577 615 340 21 5 572 84 615 8.41e-33 135
MS.gene92183.t1 AT5G28530 23.577 615 340 21 5 572 84 615 8.41e-33 135
MS.gene92183.t1 AT1G52520 21.599 588 381 14 2 572 112 636 2.17e-31 130
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 171 426 1.30e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 495 615 3.11e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 114 369 1.51e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 438 558 3.00e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 171 426 1.59e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 495 615 3.17e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 171 426 1.59e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 495 615 3.17e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 185 440 1.88e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 509 629 3.71e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 171 426 2.07e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 495 615 3.40e-13 73.6
MS.gene92183.t1 AT4G19990 29.615 260 176 4 139 395 171 426 2.07e-27 119
MS.gene92183.t1 AT4G19990 36.090 133 71 3 503 633 495 615 3.40e-13 73.6
MS.gene92183.t1 AT5G28530 21.993 582 331 21 5 572 84 556 3.77e-20 95.5
MS.gene92183.t1 AT5G28530 21.821 582 328 22 5 572 84 552 2.52e-19 92.8

Find 101 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGCTGAGTTGGACTTTA+AGG 0.133287 2.4:-27382894 MS.gene92183:CDS
TTTCGATGAGTTAACTAATT+TGG 0.156761 2.4:-27383203 MS.gene92183:CDS
AGTCGCTTCTTTGACCTAAT+TGG 0.186128 2.4:+27382068 None:intergenic
CTTTAGTCATTTCAACATTA+TGG 0.194287 2.4:-27382936 MS.gene92183:CDS
CAACAAGATTATGCTCTATT+TGG 0.198611 2.4:-27383987 MS.gene92183:CDS
TTCATTTCAGCTGCCTTTCT+TGG 0.201003 2.4:-27383484 MS.gene92183:intron
CATCGTAAGAGTGTGTTATT+TGG 0.276792 2.4:-27383451 MS.gene92183:CDS
TATGGTTTGAGGTTTCTTAT+TGG 0.280533 2.4:+27383357 None:intergenic
TTCTTTGACCTAATTGGATT+TGG 0.299426 2.4:+27382074 None:intergenic
AATCAGATTTCGACTACAAT+TGG 0.318540 2.4:-27383162 MS.gene92183:CDS
GCCGATATTTATTGTTTGTT+CGG 0.341758 2.4:+27383937 None:intergenic
GTCTTTGGTGCCAACATTCA+TGG 0.343300 2.4:+27382346 None:intergenic
TGTTCTTGAGGCAGAGAAAA+AGG 0.350793 2.4:-27382222 MS.gene92183:CDS
GGTTTCGAATGTTGATGTTT+TGG 0.354913 2.4:-27382639 MS.gene92183:CDS
ACTAGCCTGGTCTGTGTATA+TGG 0.360230 2.4:+27383339 None:intergenic
TATGCATTGGTCTTCAGTTT+GGG 0.370760 2.4:-27383062 MS.gene92183:CDS
TTCTTCATGGTCTTTGCTCA+TGG 0.372886 2.4:-27383279 MS.gene92183:CDS
AACAATAAATATCGGCCATT+AGG 0.388497 2.4:-27383930 MS.gene92183:intron
ACCGAACAAACAATAAATAT+CGG 0.389395 2.4:-27383938 MS.gene92183:CDS
GATTATGATCTTCAAACCTT+GGG 0.389473 2.4:+27382591 None:intergenic
GTATGCATTGGTCTTCAGTT+TGG 0.392120 2.4:-27383063 MS.gene92183:CDS
TTCCTTCAAATACTATTATG+AGG 0.393962 2.4:-27382762 MS.gene92183:CDS
TTCTCATACTCAACAAGAAC+TGG 0.395633 2.4:+27384467 None:intergenic
AAGAAAGACCAAATCCAATT+AGG 0.397771 2.4:-27382082 MS.gene92183:intron
TTGTGCTTGAGTGGTGTCTT+TGG 0.398612 2.4:+27382331 None:intergenic
TTTGGTCTTTCTTTGAACTT+TGG 0.398856 2.4:+27382092 None:intergenic
GAGGAGTTTCTTATTTCTAA+AGG 0.403538 2.4:-27382197 MS.gene92183:CDS
CATGTCGTATGTTTGAGAAC+CGG 0.411671 2.4:-27382514 MS.gene92183:CDS
CGAGAAGTAAATGAAGTTCA+AGG 0.430014 2.4:-27384290 MS.gene92183:CDS
TGATTATGATCTTCAAACCT+TGG 0.431975 2.4:+27382590 None:intergenic
AGCTGGAATATATTTGAAGT+TGG 0.433136 2.4:-27384408 MS.gene92183:CDS
GGGTTGTCACGGTCGACATC+AGG 0.439179 2.4:-27382556 MS.gene92183:CDS
TGGTCTGTGTATATGGTTTG+AGG 0.447350 2.4:+27383346 None:intergenic
GAAAGGGTTGGTTGTAAAGC+TGG 0.447509 2.4:-27384425 MS.gene92183:CDS
CGTTATGCTTGTAACAAAGA+AGG 0.449439 2.4:-27384542 MS.gene92183:CDS
GCTTTAATAAATTCTAAAGC+TGG 0.450264 2.4:-27384260 MS.gene92183:CDS
TGGTCTTTGCTCATGGCACA+TGG 0.452802 2.4:-27383272 MS.gene92183:CDS
CGCTTTAAAACGTATTGTGC+AGG 0.458834 2.4:+27382413 None:intergenic
GGCCTACTTCGGACTTTAAG+TGG 0.458978 2.4:-27383108 MS.gene92183:CDS
ATGTCGTATGTTTGAGAACC+GGG 0.461344 2.4:-27382513 MS.gene92183:CDS
ACAAAATAAGAAATCGGATA+AGG 0.469178 2.4:-27384576 MS.gene92183:CDS
TCATAATCAACTTGATGAAA+GGG 0.478574 2.4:-27382576 MS.gene92183:CDS
TTACAACCAACCCTTTCCTC+TGG 0.485330 2.4:+27384431 None:intergenic
TATGAGGACGACACAACAAA+AGG 0.486348 2.4:-27382746 MS.gene92183:CDS
CTCAAGTAGCACAAATGCTC+TGG 0.489977 2.4:+27384320 None:intergenic
CAATTCACAAAATAAGAAAT+CGG 0.490263 2.4:-27384582 MS.gene92183:CDS
ATCATAATCAACTTGATGAA+AGG 0.490994 2.4:-27382577 MS.gene92183:CDS
ATGATTGTCAAAACCAAGAA+AGG 0.491378 2.4:+27383471 None:intergenic
CTGTCTATGAACCATCTGTT+GGG 0.491412 2.4:-27382121 MS.gene92183:CDS
ATCAGATTTCGACTACAATT+GGG 0.491708 2.4:-27383161 MS.gene92183:CDS
CGTCAAAAGGAGATGGTGGC+TGG 0.492100 2.4:-27384134 MS.gene92183:intron
ACATTATGGTTCAGAGAATG+AGG 0.494022 2.4:-27382922 MS.gene92183:CDS
GACCGCATAAGCTGACTGTT+GGG 0.496307 2.4:+27382842 None:intergenic
TGTCTTCTGCAGCATCAACT+TGG 0.502977 2.4:+27384042 None:intergenic
AAATGCTCTGGTTTATGTAA+TGG 0.504865 2.4:+27384332 None:intergenic
CTCATTCAAATCGTATGCAT+TGG 0.507227 2.4:-27383075 MS.gene92183:CDS
GAGGGATAATCATGCTGAGT+TGG 0.508852 2.4:-27382903 MS.gene92183:CDS
ATTGGTCTTCAGTTTGGGTG+AGG 0.509410 2.4:-27383057 MS.gene92183:CDS
GTCCTCATAATAGTATTTGA+AGG 0.511429 2.4:+27382760 None:intergenic
TGTCTATAAGATATATAAGT+GGG 0.514682 2.4:-27384372 MS.gene92183:CDS
GATCTTCAAACCTTGGGGAA+AGG 0.519004 2.4:+27382597 None:intergenic
TAAAGAATCGAACAAGTGAA+TGG 0.519618 2.4:+27382954 None:intergenic
CATAATAGTATTTGAAGGAA+AGG 0.529686 2.4:+27382765 None:intergenic
ACTTCAACAACGCACTAGCC+TGG 0.534735 2.4:+27383326 None:intergenic
GAGAACATCTTATGAAGCGA+TGG 0.538371 2.4:-27384228 MS.gene92183:CDS
TAACAAAGAAGGTTTCAAGA+AGG 0.538422 2.4:-27384531 MS.gene92183:CDS
AATCGAACAAGTGAATGGTC+TGG 0.540971 2.4:+27382959 None:intergenic
ATGAGGACGACACAACAAAA+GGG 0.542065 2.4:-27382745 MS.gene92183:CDS
AACAAAGAAGGTTTCAAGAA+GGG 0.545537 2.4:-27384530 MS.gene92183:CDS
TCTTATGAAGCGATGGGTCA+AGG 0.545849 2.4:-27384221 MS.gene92183:CDS
CTGAAATCCACCATGAATGT+TGG 0.557140 2.4:-27382356 MS.gene92183:CDS
AATGAAGCTCTCTCGAAACC+AGG 0.565261 2.4:-27384080 MS.gene92183:CDS
GCTGTCTATGAACCATCTGT+TGG 0.568181 2.4:-27382122 MS.gene92183:CDS
TACACGTGTTTGCGCAGATG+CGG 0.571672 2.4:-27382270 MS.gene92183:CDS
ATGTCTATAAGATATATAAG+TGG 0.572287 2.4:-27384373 MS.gene92183:CDS
GGACCGCATAAGCTGACTGT+TGG 0.579264 2.4:+27382841 None:intergenic
TTTGGTGCAGTCCCAACAGA+TGG 0.581566 2.4:+27382110 None:intergenic
TGGTGTATACTTGTTTACTA+CGG 0.585960 2.4:+27382820 None:intergenic
ATTTCTCAACGGTGTTCTTG+AGG 0.591378 2.4:-27382234 MS.gene92183:CDS
TTGAAGAAAACCTTTCCCCA+AGG 0.594796 2.4:-27382607 MS.gene92183:CDS
TGAAGACTTAGAAGGCGTAA+CGG 0.598405 2.4:+27382154 None:intergenic
ATTATGATCTTCAAACCTTG+GGG 0.598902 2.4:+27382592 None:intergenic
TTGATATCGTTGTGCTTGAG+TGG 0.601464 2.4:+27382322 None:intergenic
AACTCGTCAAAAGGAGATGG+TGG 0.603142 2.4:-27384138 MS.gene92183:intron
ACGTGTTTGCGCAGATGCGG+AGG 0.605934 2.4:-27382267 MS.gene92183:CDS
ATCCCAACAGTCAGCTTATG+CGG 0.606153 2.4:-27382844 MS.gene92183:CDS
GATTTCAGCTTATCGACAGA+CGG 0.615636 2.4:+27382371 None:intergenic
AGAACTGGACTGTCACATGT+TGG 0.620791 2.4:+27384482 None:intergenic
AGAACATCTTATGAAGCGAT+GGG 0.621635 2.4:-27384227 MS.gene92183:CDS
AGCCACTTAAAGTCCGAAGT+AGG 0.621799 2.4:+27383106 None:intergenic
ACTTGATGAAAGGGTTGTCA+CGG 0.625994 2.4:-27382567 MS.gene92183:CDS
GGTCTTTGCTCATGGCACAT+GGG 0.639768 2.4:-27383271 MS.gene92183:CDS
CATTATGGTTCAGAGAATGA+GGG 0.643278 2.4:-27382921 MS.gene92183:CDS
TTTGGTGCCAACATTCATGG+TGG 0.650392 2.4:+27382349 None:intergenic
TGAATAAATGAAAAGCAAGA+TGG 0.655697 2.4:+27382800 None:intergenic
GCATCTGAAATATTTCTCAA+CGG 0.661104 2.4:-27382245 MS.gene92183:CDS
CATGTCGACATAAGAAACCC+CGG 0.663279 2.4:+27382495 None:intergenic
TGTCGTATGTTTGAGAACCG+GGG 0.673760 2.4:-27382512 MS.gene92183:CDS
ATGTTGATAATGATAATGAG+AGG 0.683310 2.4:-27382661 MS.gene92183:CDS
TCAAACCATATACACAGACC+AGG 0.683597 2.4:-27383344 MS.gene92183:CDS
TGTTGATAATGATAATGAGA+GGG 0.689129 2.4:-27382660 MS.gene92183:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTCTATAAGATATATAAG+TGG - chr2.4:27382192-27382211 MS.gene92183:CDS 20.0%
!! CAATTCACAAAATAAGAAAT+CGG - chr2.4:27381983-27382002 MS.gene92183:intron 20.0%
!! TGTCTATAAGATATATAAGT+GGG - chr2.4:27382193-27382212 MS.gene92183:CDS 20.0%
!!! AATTTAATGTTCTGGTTTAT+GGG - chr2.4:27382810-27382829 MS.gene92183:CDS 20.0%
!!! ATGATGAAAAACTGTTTTAA+TGG - chr2.4:27383432-27383451 MS.gene92183:CDS 20.0%
!!! TGAATGTTTATATTGATTGA+AGG - chr2.4:27382782-27382801 MS.gene92183:CDS 20.0%
! ACAAAATAAGAAATCGGATA+AGG - chr2.4:27381989-27382008 MS.gene92183:intron 25.0%
! ACCGAACAAACAATAAATAT+CGG - chr2.4:27382627-27382646 MS.gene92183:CDS 25.0%
! AGTACAAAATACTAACCTAA+TGG + chr2.4:27382653-27382672 None:intergenic 25.0%
! ATCATAATCAACTTGATGAA+AGG - chr2.4:27383988-27384007 MS.gene92183:CDS 25.0%
! CATAATAGTATTTGAAGGAA+AGG + chr2.4:27383803-27383822 None:intergenic 25.0%
! CTTTAGTCATTTCAACATTA+TGG - chr2.4:27383629-27383648 MS.gene92183:intron 25.0%
! TCATAATCAACTTGATGAAA+GGG - chr2.4:27383989-27384008 MS.gene92183:CDS 25.0%
! TGAAATTTGAATGAATGTTC+TGG - chr2.4:27382700-27382719 MS.gene92183:CDS 25.0%
! TGAATAAATGAAAAGCAAGA+TGG + chr2.4:27383768-27383787 None:intergenic 25.0%
! TTCCTTCAAATACTATTATG+AGG - chr2.4:27383803-27383822 MS.gene92183:intron 25.0%
! TTTCGATGAGTTAACTAATT+TGG - chr2.4:27383362-27383381 MS.gene92183:CDS 25.0%
!! AGGTTTAGAATTTAATGTTC+TGG - chr2.4:27382802-27382821 MS.gene92183:CDS 25.0%
!! CAAAGTTTTCACAATTGAAA+AGG - chr2.4:27383863-27383882 MS.gene92183:intron 25.0%
!! TGTTGTATTTTGTTCTGATT+TGG - chr2.4:27383058-27383077 MS.gene92183:CDS 25.0%
!!! ATGTTGATAATGATAATGAG+AGG - chr2.4:27383904-27383923 MS.gene92183:intron 25.0%
!!! CTTATTTTGTGAATTGTTCT+TGG + chr2.4:27381979-27381998 None:intergenic 25.0%
!!! GAATTTAATGTTCTGGTTTA+TGG - chr2.4:27382809-27382828 MS.gene92183:CDS 25.0%
!!! GCTTTAATAAATTCTAAAGC+TGG - chr2.4:27382305-27382324 MS.gene92183:CDS 25.0%
!!! TGAAAAACTGTTTTAATGGA+AGG - chr2.4:27383436-27383455 MS.gene92183:CDS 25.0%
!!! TGTTGATAATGATAATGAGA+GGG - chr2.4:27383905-27383924 MS.gene92183:intron 25.0%
AAACACATATGATCTTTCCA+TGG + chr2.4:27382873-27382892 None:intergenic 30.0%
AACAAAGAAGGTTTCAAGAA+GGG - chr2.4:27382035-27382054 MS.gene92183:intron 30.0%
AACAATAAATATCGGCCATT+AGG - chr2.4:27382635-27382654 MS.gene92183:CDS 30.0%
AAGAAAGACCAAATCCAATT+AGG - chr2.4:27384483-27384502 MS.gene92183:CDS 30.0%
AATCAGATTTCGACTACAAT+TGG - chr2.4:27383403-27383422 MS.gene92183:CDS 30.0%
AGAACACCTTGAAAAACATT+CGG + chr2.4:27383270-27383289 None:intergenic 30.0%
ATCAGATTTCGACTACAATT+GGG - chr2.4:27383404-27383423 MS.gene92183:CDS 30.0%
ATGATTGTCAAAACCAAGAA+AGG + chr2.4:27383097-27383116 None:intergenic 30.0%
ATTATGATCTTCAAACCTTG+GGG + chr2.4:27383976-27383995 None:intergenic 30.0%
CAACAAGATTATGCTCTATT+TGG - chr2.4:27382578-27382597 MS.gene92183:CDS 30.0%
CTGGTATATGTGTGTTAATT+TGG - chr2.4:27382739-27382758 MS.gene92183:CDS 30.0%
GAGAATGCAAAGAAAAATCT+CGG - chr2.4:27383318-27383337 MS.gene92183:CDS 30.0%
GATTATGATCTTCAAACCTT+GGG + chr2.4:27383977-27383996 None:intergenic 30.0%
GCCGATATTTATTGTTTGTT+CGG + chr2.4:27382631-27382650 None:intergenic 30.0%
GTCCTCATAATAGTATTTGA+AGG + chr2.4:27383808-27383827 None:intergenic 30.0%
TAAAGAAAAACCAGAGGAAA+GGG - chr2.4:27382124-27382143 MS.gene92183:CDS 30.0%
TAAAGAATCGAACAAGTGAA+TGG + chr2.4:27383614-27383633 None:intergenic 30.0%
TAACAAAGAAGGTTTCAAGA+AGG - chr2.4:27382034-27382053 MS.gene92183:intron 30.0%
TGATTATGATCTTCAAACCT+TGG + chr2.4:27383978-27383997 None:intergenic 30.0%
TGGATATCATAGTAAAAACC+TGG + chr2.4:27382506-27382525 None:intergenic 30.0%
TGGTGTATACTTGTTTACTA+CGG + chr2.4:27383748-27383767 None:intergenic 30.0%
TTCTTTGACCTAATTGGATT+TGG + chr2.4:27384494-27384513 None:intergenic 30.0%
TTTAAGTCCGAAAATCGAAA+AGG + chr2.4:27382392-27382411 None:intergenic 30.0%
TTTCTATTTACACAGCACAA+TGG - chr2.4:27383017-27383036 MS.gene92183:CDS 30.0%
! AAATGCTCTGGTTTATGTAA+TGG + chr2.4:27382236-27382255 None:intergenic 30.0%
! AGCTGGAATATATTTGAAGT+TGG - chr2.4:27382157-27382176 MS.gene92183:CDS 30.0%
! GAATCTTCCTTTTCGATTTT+CGG - chr2.4:27382382-27382401 MS.gene92183:CDS 30.0%
! GCATCTGAAATATTTCTCAA+CGG - chr2.4:27384320-27384339 MS.gene92183:CDS 30.0%
! TATGGTTTGAGGTTTCTTAT+TGG + chr2.4:27383211-27383230 None:intergenic 30.0%
! TCAATTCCGAATGTTTTTCA+AGG - chr2.4:27383261-27383280 MS.gene92183:CDS 30.0%
! TGAGGCTTTAACAATTTAAG+CGG - chr2.4:27384592-27384611 MS.gene92183:CDS 30.0%
! TTTGGTCTTTCTTTGAACTT+TGG + chr2.4:27384476-27384495 None:intergenic 30.0%
!! ACATGTTTTCAAGATTTTGG+AGG - chr2.4:27384088-27384107 MS.gene92183:CDS 30.0%
!! ATGTTCTGGTTTAGAATTGA+AGG - chr2.4:27382714-27382733 MS.gene92183:CDS 30.0%
!! GAGGAGTTTCTTATTTCTAA+AGG - chr2.4:27384368-27384387 MS.gene92183:CDS 30.0%
!! TCGACATGTTTTCAAGATTT+TGG - chr2.4:27384085-27384104 MS.gene92183:CDS 30.0%
!!! AAGACATAGCCAGTATTTTT+TGG - chr2.4:27382540-27382559 MS.gene92183:CDS 30.0%
!!! AGACATAGCCAGTATTTTTT+GGG - chr2.4:27382541-27382560 MS.gene92183:CDS 30.0%
ACATTATGGTTCAGAGAATG+AGG - chr2.4:27383643-27383662 MS.gene92183:intron 35.0%
AGAACATCTTATGAAGCGAT+GGG - chr2.4:27382338-27382357 MS.gene92183:CDS 35.0%
CATAAATTCCAAGGCAAGAT+AGG + chr2.4:27382840-27382859 None:intergenic 35.0%
CATTATGGTTCAGAGAATGA+GGG - chr2.4:27383644-27383663 MS.gene92183:intron 35.0%
CGAGAAGTAAATGAAGTTCA+AGG - chr2.4:27382275-27382294 MS.gene92183:CDS 35.0%
CGTTATGCTTGTAACAAAGA+AGG - chr2.4:27382023-27382042 MS.gene92183:intron 35.0%
CTAAAGAAAAACCAGAGGAA+AGG - chr2.4:27382123-27382142 MS.gene92183:CDS 35.0%
CTCATTCAAATCGTATGCAT+TGG - chr2.4:27383490-27383509 MS.gene92183:intron 35.0%
GAAAGCTAAAGAAAAACCAG+AGG - chr2.4:27382118-27382137 MS.gene92183:CDS 35.0%
GAAGCAAAAGAAAGATGATG+AGG - chr2.4:27384574-27384593 MS.gene92183:CDS 35.0%
GACAGAAATTCCTTATAGCT+CGG - chr2.4:27384549-27384568 MS.gene92183:CDS 35.0%
GTCTGCTTAATCCTAAAAAC+AGG - chr2.4:27382060-27382079 MS.gene92183:intron 35.0%
TCTAATGACAACTCGTCAAA+AGG - chr2.4:27382418-27382437 MS.gene92183:CDS 35.0%
TGTACAGAGCATAAATTCCA+AGG + chr2.4:27382849-27382868 None:intergenic 35.0%
TTCTCATACTCAACAAGAAC+TGG + chr2.4:27382101-27382120 None:intergenic 35.0%
! CATCGTAAGAGTGTGTTATT+TGG - chr2.4:27383114-27383133 MS.gene92183:CDS 35.0%
! GAGGCTTTAACAATTTAAGC+GGG - chr2.4:27384593-27384612 MS.gene92183:CDS 35.0%
! GGTTTCGAATGTTGATGTTT+TGG - chr2.4:27383926-27383945 MS.gene92183:intron 35.0%
! TCTTTCAATGCTTTTCTTCG+TGG - chr2.4:27383573-27383592 MS.gene92183:intron 35.0%
! TGGTTTAGAATTGAAGGTTC+TGG - chr2.4:27382720-27382739 MS.gene92183:CDS 35.0%
! TTTTAATGGAAGGCCTACTT+CGG - chr2.4:27383446-27383465 MS.gene92183:CDS 35.0%
!! ACTGCTTTTGAAGACTTAGA+AGG + chr2.4:27384422-27384441 None:intergenic 35.0%
!! TATGCATTGGTCTTCAGTTT+GGG - chr2.4:27383503-27383522 MS.gene92183:intron 35.0%
!! TTCAAGATTTTGGAGGTCTT+AGG - chr2.4:27384095-27384114 MS.gene92183:CDS 35.0%
!!! AGACATCAGCTACTTTTGAT+TGG - chr2.4:27383157-27383176 MS.gene92183:CDS 35.0%
!!! CTGCACAATACGTTTTAAAG+CGG - chr2.4:27384153-27384172 MS.gene92183:intron 35.0%
!!! GTTTTTCAAGGTGTTCTTCA+TGG - chr2.4:27383273-27383292 MS.gene92183:CDS 35.0%
AATCGAACAAGTGAATGGTC+TGG + chr2.4:27383609-27383628 None:intergenic 40.0%
ACCTATGATCTTTGCATAGC+TGG + chr2.4:27382967-27382986 None:intergenic 40.0%
ACTTGATGAAAGGGTTGTCA+CGG - chr2.4:27383998-27384017 MS.gene92183:CDS 40.0%
AGTCGCTTCTTTGACCTAAT+TGG + chr2.4:27384500-27384519 None:intergenic 40.0%
ATGAGGACGACACAACAAAA+GGG - chr2.4:27383820-27383839 MS.gene92183:intron 40.0%
ATGTCGTATGTTTGAGAACC+GGG - chr2.4:27384052-27384071 MS.gene92183:CDS 40.0%
ATTTATGCTCTGTACAGCCA+TGG - chr2.4:27382853-27382872 MS.gene92183:CDS 40.0%
ATTTCTCAACGGTGTTCTTG+AGG - chr2.4:27384331-27384350 MS.gene92183:CDS 40.0%
CATGTCGTATGTTTGAGAAC+CGG - chr2.4:27384051-27384070 MS.gene92183:CDS 40.0%
CTGAAATCCACCATGAATGT+TGG - chr2.4:27384209-27384228 MS.gene92183:intron 40.0%
CTGTCTATGAACCATCTGTT+GGG - chr2.4:27384444-27384463 MS.gene92183:CDS 40.0%
GAGAACATCTTATGAAGCGA+TGG - chr2.4:27382337-27382356 MS.gene92183:CDS 40.0%
GATTTCAGCTTATCGACAGA+CGG + chr2.4:27384197-27384216 None:intergenic 40.0%
TATGAGGACGACACAACAAA+AGG - chr2.4:27383819-27383838 MS.gene92183:intron 40.0%
TCAAACCATATACACAGACC+AGG - chr2.4:27383221-27383240 MS.gene92183:CDS 40.0%
TCCAGCTATGCAAAGATCAT+AGG - chr2.4:27382963-27382982 MS.gene92183:CDS 40.0%
TCCATCTGCCCAAAAAATAC+TGG + chr2.4:27382552-27382571 None:intergenic 40.0%
TGGTCTGTGTATATGGTTTG+AGG + chr2.4:27383222-27383241 None:intergenic 40.0%
TGTTCTTGAGGCAGAGAAAA+AGG - chr2.4:27384343-27384362 MS.gene92183:CDS 40.0%
TTCATTTCAGCTGCCTTTCT+TGG - chr2.4:27383081-27383100 MS.gene92183:CDS 40.0%
TTCTTCATGGTCTTTGCTCA+TGG - chr2.4:27383286-27383305 MS.gene92183:CDS 40.0%
TTGAAGAAAACCTTTCCCCA+AGG - chr2.4:27383958-27383977 MS.gene92183:CDS 40.0%
TTGATATCGTTGTGCTTGAG+TGG + chr2.4:27384246-27384265 None:intergenic 40.0%
TTTGCTTCTTCCGAGCTATA+AGG + chr2.4:27384562-27384581 None:intergenic 40.0%
! TCATGCTGAGTTGGACTTTA+AGG - chr2.4:27383671-27383690 MS.gene92183:intron 40.0%
! TGAAGACTTAGAAGGCGTAA+CGG + chr2.4:27384414-27384433 None:intergenic 40.0%
!! AAGATTTTGGAGGTCTTAGG+TGG - chr2.4:27384098-27384117 MS.gene92183:CDS 40.0%
!! CGCTTTAAAACGTATTGTGC+AGG + chr2.4:27384155-27384174 None:intergenic 40.0%
!! GTATGCATTGGTCTTCAGTT+TGG - chr2.4:27383502-27383521 MS.gene92183:intron 40.0%
!! TCACATGTTGGCCTGTTTTT+AGG + chr2.4:27382074-27382093 None:intergenic 40.0%
!!! CACAATACGTTTTAAAGCGG+TGG - chr2.4:27384156-27384175 MS.gene92183:intron 40.0%
AACTCGTCAAAAGGAGATGG+TGG - chr2.4:27382427-27382446 MS.gene92183:CDS 45.0%
AATGAAGCTCTCTCGAAACC+AGG - chr2.4:27382485-27382504 MS.gene92183:CDS 45.0%
AGAACTGGACTGTCACATGT+TGG + chr2.4:27382086-27382105 None:intergenic 45.0%
AGCCACTTAAAGTCCGAAGT+AGG + chr2.4:27383462-27383481 None:intergenic 45.0%
ATAGCACAACTTCTCAAGCG+AGG + chr2.4:27382942-27382961 None:intergenic 45.0%
ATCCCAACAGTCAGCTTATG+CGG - chr2.4:27383721-27383740 MS.gene92183:intron 45.0%
CATGTCGACATAAGAAACCC+CGG + chr2.4:27384073-27384092 None:intergenic 45.0%
CTCAAGTAGCACAAATGCTC+TGG + chr2.4:27382248-27382267 None:intergenic 45.0%
GAAAAACCAGAGGAAAGGGT+TGG - chr2.4:27382128-27382147 MS.gene92183:CDS 45.0%
GACAACTCGTCAAAAGGAGA+TGG - chr2.4:27382424-27382443 MS.gene92183:CDS 45.0%
GAGGGATAATCATGCTGAGT+TGG - chr2.4:27383662-27383681 MS.gene92183:intron 45.0%
GATCTTCAAACCTTGGGGAA+AGG + chr2.4:27383971-27383990 None:intergenic 45.0%
GCTGTCTATGAACCATCTGT+TGG - chr2.4:27384443-27384462 MS.gene92183:CDS 45.0%
TCTTATGAAGCGATGGGTCA+AGG - chr2.4:27382344-27382363 MS.gene92183:CDS 45.0%
TGTCGTATGTTTGAGAACCG+GGG - chr2.4:27384053-27384072 MS.gene92183:CDS 45.0%
TGTCTTCTGCAGCATCAACT+TGG + chr2.4:27382526-27382545 None:intergenic 45.0%
TTACAACCAACCCTTTCCTC+TGG + chr2.4:27382137-27382156 None:intergenic 45.0%
TTGTGCTTGAGTGGTGTCTT+TGG + chr2.4:27384237-27384256 None:intergenic 45.0%
! ACTAGCCTGGTCTGTGTATA+TGG + chr2.4:27383229-27383248 None:intergenic 45.0%
! GTGAGGTCACATTTTACAGC+TGG - chr2.4:27383525-27383544 MS.gene92183:intron 45.0%
!! ATTGGTCTTCAGTTTGGGTG+AGG - chr2.4:27383508-27383527 MS.gene92183:intron 45.0%
!! GAAAGGGTTGGTTGTAAAGC+TGG - chr2.4:27382140-27382159 MS.gene92183:CDS 45.0%
!! GTCTTTGGTGCCAACATTCA+TGG + chr2.4:27384222-27384241 None:intergenic 45.0%
!! TTTGGTGCCAACATTCATGG+TGG + chr2.4:27384219-27384238 None:intergenic 45.0%
!!! GCCAGTATTTTTTGGGCAGA+TGG - chr2.4:27382548-27382567 MS.gene92183:CDS 45.0%
ACTTCAACAACGCACTAGCC+TGG + chr2.4:27383242-27383261 None:intergenic 50.0%
GACCGCATAAGCTGACTGTT+GGG + chr2.4:27383726-27383745 None:intergenic 50.0%
GGCCTACTTCGGACTTTAAG+TGG - chr2.4:27383457-27383476 MS.gene92183:CDS 50.0%
GGTCTTTGCTCATGGCACAT+GGG - chr2.4:27383294-27383313 MS.gene92183:CDS 50.0%
TACACGTGTTTGCGCAGATG+CGG - chr2.4:27384295-27384314 MS.gene92183:CDS 50.0%
TGAGGCAGAGAAAAAGGCAG+AGG - chr2.4:27384349-27384368 MS.gene92183:CDS 50.0%
TGGGTGATCCTATCTTGCCT+TGG - chr2.4:27382829-27382848 MS.gene92183:CDS 50.0%
TGGTCTTTGCTCATGGCACA+TGG - chr2.4:27383293-27383312 MS.gene92183:CDS 50.0%
! TTTGGTGCAGTCCCAACAGA+TGG + chr2.4:27384458-27384477 None:intergenic 50.0%
GGACCGCATAAGCTGACTGT+TGG + chr2.4:27383727-27383746 None:intergenic 55.0%
! CGTCAAAAGGAGATGGTGGC+TGG - chr2.4:27382431-27382450 MS.gene92183:CDS 55.0%
! GCGATGGGTCAAGGAGTATG+AGG - chr2.4:27382353-27382372 MS.gene92183:CDS 55.0%
! GGGTCAAGGAGTATGAGGCA+CGG - chr2.4:27382358-27382377 MS.gene92183:CDS 55.0%
ACGTGTTTGCGCAGATGCGG+AGG - chr2.4:27384298-27384317 MS.gene92183:CDS 60.0%
GGGTTGTCACGGTCGACATC+AGG - chr2.4:27384009-27384028 MS.gene92183:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 27381966 27384621 27381966 ID=MS.gene92183
chr2.4 mRNA 27381966 27384621 27381966 ID=MS.gene92183.t1;Parent=MS.gene92183
chr2.4 exon 27384220 27384621 27384220 ID=MS.gene92183.t1.exon1;Parent=MS.gene92183.t1
chr2.4 CDS 27384220 27384621 27384220 ID=cds.MS.gene92183.t1;Parent=MS.gene92183.t1
chr2.4 exon 27383931 27384147 27383931 ID=MS.gene92183.t1.exon2;Parent=MS.gene92183.t1
chr2.4 CDS 27383931 27384147 27383931 ID=cds.MS.gene92183.t1;Parent=MS.gene92183.t1
chr2.4 exon 27382083 27383496 27382083 ID=MS.gene92183.t1.exon3;Parent=MS.gene92183.t1
chr2.4 CDS 27382083 27383496 27382083 ID=cds.MS.gene92183.t1;Parent=MS.gene92183.t1
chr2.4 exon 27381966 27381975 27381966 ID=MS.gene92183.t1.exon4;Parent=MS.gene92183.t1
chr2.4 CDS 27381966 27381975 27381966 ID=cds.MS.gene92183.t1;Parent=MS.gene92183.t1
Gene Sequence

>MS.gene92183

ATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGCGATGGGTCAAGGAGTATGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGGTTAGTATTTTGTACTTCTCACAGTTTTTAATTCTTATATTCTTGAAATTTGAATGAATGTTCTGGTTTAGAATTGAAGGTTCTGGTATATGTGTGTTAATTTGGCTCTTGTGTGTGTTTAGAATTGAATGTTTATATTGATTGAAGGTTTAGAATTTAATGTTCTGGTTTATGGGTGATCCTATCTTGCCTTGGAATTTATGCTCTGTACAGCCATGGAAAGATCATATGTGTTTTTTTATCGATGATAAATAGCTCTTTCTGTGTTTGCGAGTTTAGACACCTCGCTTGAGAAGTTGTGCTATGTCCAGCTATGCAAAGATCATAGGTGTTTTTTTACAGTTGTTAAATGAATAGCTTTTTCTATTTACACAGCACAATGGTTTTATATTTTTTAAATATGTTGTATTTTGTTCTGATTTGGTTCATTTCAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTAGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTCTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTGTTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGACGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAAAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCAACTTGATGAAAGGGTTGTCACGGTCGACATCAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATACGTTTTAAAGCGGTGGACTAGAGATGTGTGTCCGTCTGTCGATAAGCTGAAATCCACCATGAATGTTGGCACCAAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTCTACACGTGTTTGCGCAGATGCGGAGGCATCTGAAATATTTCTCAACGGTGTTCTTGAGGCAGAGAAAAAGGCAGAGGAGTTTCTTATTTCTAAAGGTATTCATACAGATCGATCATCCGTTACGCCTTCTAAGTCTTCAAAAGCAGTTGCTGTCTATGAACCATCTGTTGGGACTGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAGGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGCAAGACAGAAATTCCTTATAGCTCGGAAGAAGCAAAAGAAAGATGATGAGGCTTTAACAATTTAAGCGGGCACTGA
Protein sequence

>MS.gene92183.t1

MLKSKNNSQNKKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEAMGQGEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQASALLKSIPNVFQGVLHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNCFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFSFIHSQYDLSFKYYYEDDTTKGSELNKFFKVFTIEKVDYNYDDVDNDNERVSNVDVLDAEFEENLSPRFEDHNQLDERVVTVDIRSKSFTCSCRMFENRGFLCRHVFKILEVLGGHVQYHFLKTIPAQYVLKRWTRDVCPSVDKLKSTMNVGTKDTTQAQRYQQICAVTVQLSTRVCADAEASEIFLNGVLEAEKKAEEFLISKGIHTDRSSVTPSKSSKAVAVYEPSVGTAPKFKERPNPISGH