Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92234.t1 | RHN76102.1 | 86.7 | 105 | 14 | 0 | 17 | 121 | 251 | 355 | 1.60E-40 | 176.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92234.t1 | Q9XE58 | 43.9 | 107 | 54 | 2 | 14 | 118 | 347 | 449 | 6.1e-17 | 89.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92234.t1 | G7IRV1 | 86.7 | 105 | 14 | 0 | 17 | 121 | 323 | 427 | 1.1e-40 | 176.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene92234.t1 | TF | GRAS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92234.t1 | MTR_2g097410 | 86.667 | 105 | 14 | 0 | 17 | 121 | 323 | 427 | 9.62e-54 | 184 |
MS.gene92234.t1 | MTR_4g064150 | 53.465 | 101 | 42 | 2 | 21 | 118 | 316 | 414 | 4.02e-28 | 112 |
MS.gene92234.t1 | MTR_3g087300 | 89.286 | 56 | 6 | 0 | 29 | 84 | 153 | 208 | 3.35e-26 | 101 |
MS.gene92234.t1 | MTR_4g064160 | 56.383 | 94 | 39 | 1 | 27 | 118 | 276 | 369 | 1.56e-25 | 104 |
MS.gene92234.t1 | MTR_4g064120 | 62.025 | 79 | 28 | 1 | 46 | 122 | 235 | 313 | 5.19e-25 | 103 |
MS.gene92234.t1 | MTR_4g064180 | 61.429 | 70 | 27 | 0 | 46 | 115 | 235 | 304 | 1.07e-22 | 96.7 |
MS.gene92234.t1 | MTR_7g062120 | 57.895 | 76 | 32 | 0 | 47 | 122 | 354 | 429 | 1.79e-22 | 95.9 |
MS.gene92234.t1 | MTR_2g097390 | 53.012 | 83 | 39 | 0 | 36 | 118 | 246 | 328 | 1.80e-21 | 93.2 |
MS.gene92234.t1 | MTR_2g097350 | 49.425 | 87 | 44 | 0 | 36 | 122 | 245 | 331 | 1.34e-20 | 90.5 |
MS.gene92234.t1 | MTR_2g097310 | 49.398 | 83 | 42 | 0 | 36 | 118 | 243 | 325 | 2.15e-19 | 87.0 |
MS.gene92234.t1 | MTR_2g097463 | 45.631 | 103 | 50 | 2 | 59 | 156 | 284 | 385 | 4.67e-18 | 83.2 |
MS.gene92234.t1 | MTR_4g064200 | 62.500 | 56 | 21 | 0 | 59 | 114 | 278 | 333 | 5.87e-16 | 77.0 |
MS.gene92234.t1 | MTR_2g097467 | 45.263 | 95 | 46 | 2 | 59 | 148 | 283 | 376 | 7.67e-16 | 76.6 |
MS.gene92234.t1 | MTR_2g097473 | 45.263 | 95 | 46 | 2 | 59 | 148 | 283 | 376 | 9.35e-16 | 76.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92234.t1 | AT1G07520 | 36.313 | 179 | 100 | 4 | 44 | 216 | 127 | 297 | 1.12e-21 | 93.6 |
MS.gene92234.t1 | AT1G07520 | 36.313 | 179 | 100 | 4 | 44 | 216 | 127 | 297 | 1.12e-21 | 93.6 |
MS.gene92234.t1 | AT1G07520 | 36.313 | 179 | 100 | 4 | 44 | 216 | 291 | 461 | 1.25e-21 | 93.6 |
MS.gene92234.t1 | AT1G07520 | 36.313 | 179 | 100 | 4 | 44 | 216 | 292 | 462 | 1.26e-21 | 93.6 |
MS.gene92234.t1 | AT1G07530 | 43.925 | 107 | 54 | 2 | 14 | 118 | 347 | 449 | 2.17e-21 | 92.8 |
MS.gene92234.t1 | AT4G39630 | 47.423 | 97 | 40 | 2 | 146 | 231 | 120 | 216 | 1.33e-19 | 84.3 |
MS.gene92234.t1 | AT4G39630 | 67.213 | 61 | 19 | 1 | 172 | 231 | 169 | 229 | 3.01e-19 | 83.6 |
MS.gene92234.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 53 | 122 | 335 | 404 | 6.43e-18 | 82.8 |
MS.gene92234.t1 | AT2G37650 | 55.714 | 70 | 31 | 0 | 53 | 122 | 323 | 392 | 7.31e-18 | 82.8 |
MS.gene92234.t1 | AT2G29060 | 47.436 | 78 | 41 | 0 | 45 | 122 | 264 | 341 | 3.64e-17 | 80.5 |
MS.gene92234.t1 | AT2G29060 | 47.436 | 78 | 41 | 0 | 45 | 122 | 301 | 378 | 3.67e-17 | 80.5 |
MS.gene92234.t1 | AT5G59450 | 40.659 | 91 | 53 | 1 | 27 | 116 | 188 | 278 | 4.78e-14 | 71.2 |
MS.gene92234.t1 | AT3G46600 | 39.785 | 93 | 53 | 1 | 24 | 116 | 142 | 231 | 1.05e-13 | 70.5 |
MS.gene92234.t1 | AT3G46600 | 39.785 | 93 | 53 | 1 | 24 | 116 | 174 | 263 | 1.31e-13 | 70.1 |
MS.gene92234.t1 | AT2G29065 | 57.627 | 59 | 25 | 0 | 59 | 117 | 246 | 304 | 3.79e-13 | 68.9 |
Find 62 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGAAACCCGAAGTGTTT+TGG | 0.224337 | 2.1:-33267761 | None:intergenic |
TTGGATCACTTGCAAGGATA+TGG | 0.297228 | 2.1:+33267235 | MS.gene92234:CDS |
AGGAAGCATTCTTGTCCTTC+AGG | 0.304700 | 2.1:+33266765 | MS.gene92234:CDS |
TTAATTAATCATACCATGTA+TGG | 0.348790 | 2.1:-33267851 | None:intergenic |
GGCAGTTACTTTCTTGCCTC+AGG | 0.350572 | 2.1:+33266944 | MS.gene92234:intron |
ATGAATTGTTGAAGCAGATT+AGG | 0.368680 | 2.1:+33266745 | MS.gene92234:CDS |
TGTGGATTTGAGGACCCTTT+TGG | 0.385294 | 2.1:+33266677 | MS.gene92234:CDS |
CTGCTACACTCACATACCTT+TGG | 0.389209 | 2.1:+33267216 | MS.gene92234:CDS |
ACACTTCGGGTTTCCAAGCC+TGG | 0.395663 | 2.1:+33267766 | MS.gene92234:CDS |
CTGTGTCTGCTAATGACAAT+AGG | 0.396882 | 2.1:+33266715 | MS.gene92234:CDS |
CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 2.1:+33266491 | None:intergenic |
ACAGGGAGAACAAGCTTTGT+TGG | 0.399351 | 2.1:+33267142 | MS.gene92234:intron |
GATGACACCCAAAACACTTC+GGG | 0.406577 | 2.1:+33267753 | MS.gene92234:CDS |
GTACAGAAATTCGAATTCAT+TGG | 0.407732 | 2.1:+33266517 | MS.gene92234:CDS |
GAGATGCTTCTTTCTGTCCA+TGG | 0.428796 | 2.1:+33267790 | MS.gene92234:CDS |
GTCTATTGTATAGGCTTTGG+AGG | 0.440001 | 2.1:+33267533 | MS.gene92234:intron |
AGAGGGATGTTGTGGATTTG+AGG | 0.451718 | 2.1:+33266667 | MS.gene92234:CDS |
TGCTGATAATCTGTGTTTCA+AGG | 0.456022 | 2.1:+33267165 | MS.gene92234:CDS |
ACACAGGTTGGTGAACTTGA+TGG | 0.468419 | 2.1:+33266612 | MS.gene92234:CDS |
AAGAAGCATCTCTCCAGGCT+TGG | 0.480558 | 2.1:-33267779 | None:intergenic |
CAAGAAGGTCTTCTGACTCC+TGG | 0.484397 | 2.1:+33267585 | MS.gene92234:CDS |
CGAAGAAACAAGGGAGGAAG+AGG | 0.489890 | 2.1:+33266649 | MS.gene92234:CDS |
ATTGTCCTTGTAAACACCTA+GGG | 0.494564 | 2.1:-33267818 | None:intergenic |
CTCATGGTTGGTGCTGGTAA+CGG | 0.511296 | 2.1:+33266837 | MS.gene92234:CDS |
TCTGTCCATGGATCACCCCT+AGG | 0.525999 | 2.1:+33267802 | MS.gene92234:CDS |
AGGGAGGAAGAGGGATGTTG+TGG | 0.530372 | 2.1:+33266659 | MS.gene92234:CDS |
GGATGACACCCAAAACACTT+CGG | 0.531639 | 2.1:+33267752 | MS.gene92234:CDS |
GCCGTTGTGTGCTGAACAAA+AGG | 0.535793 | 2.1:+33266566 | MS.gene92234:CDS |
CTCTGTGATGCATCACCTGA+AGG | 0.537655 | 2.1:-33266780 | None:intergenic |
GAAGCGCTCATGGTTGGTGC+TGG | 0.539724 | 2.1:+33266831 | MS.gene92234:CDS |
GCAGTTACTTTCTTGCCTCA+GGG | 0.540939 | 2.1:+33266945 | MS.gene92234:intron |
CTTGTGCACACAGAACCAAA+AGG | 0.550869 | 2.1:-33266692 | None:intergenic |
ACAGAAAGAAGCATCTCTCC+AGG | 0.551277 | 2.1:-33267784 | None:intergenic |
ATACCTTTGGATCACTTGCA+AGG | 0.562693 | 2.1:+33267229 | MS.gene92234:CDS |
TATTGTCCTTGTAAACACCT+AGG | 0.567249 | 2.1:-33267819 | None:intergenic |
TTGTGCACACAGAACCAAAA+GGG | 0.577974 | 2.1:-33266691 | None:intergenic |
CAAAATCAATTATCTTACAT+AGG | 0.581207 | 2.1:-33268004 | None:intergenic |
ATCACCCCTAGGTGTTTACA+AGG | 0.589706 | 2.1:+33267813 | MS.gene92234:CDS |
TAATGCGATTGAAGCGCTCA+TGG | 0.598596 | 2.1:+33266821 | MS.gene92234:CDS |
AATAACATGGAAGCCATACA+TGG | 0.600635 | 2.1:+33267838 | MS.gene92234:CDS |
AGTTACTTTCTTGCCTCAGG+GGG | 0.601989 | 2.1:+33266947 | MS.gene92234:intron |
GCGATTGAAGCGCTCATGGT+TGG | 0.605684 | 2.1:+33266825 | MS.gene92234:CDS |
AGGTGATGCATCACAGAGAA+CGG | 0.608660 | 2.1:+33266785 | MS.gene92234:CDS |
TTGTGTGCTGAACAAAAGGA+TGG | 0.608825 | 2.1:+33266570 | MS.gene92234:CDS |
TATCCTTGCAAGTGATCCAA+AGG | 0.609170 | 2.1:-33267232 | None:intergenic |
TGGTGAACTTGATGGAGGGA+AGG | 0.610203 | 2.1:+33266620 | MS.gene92234:CDS |
AAGGCGTGTTCGAAGAAACA+AGG | 0.613184 | 2.1:+33266639 | MS.gene92234:CDS |
CAGATGTTAGCGATGCAAGA+AGG | 0.615125 | 2.1:+33267570 | MS.gene92234:CDS |
AAACACCTAGGGGTGATCCA+TGG | 0.624497 | 2.1:-33267807 | None:intergenic |
CAGTTACTTTCTTGCCTCAG+GGG | 0.626731 | 2.1:+33266946 | MS.gene92234:intron |
GCTAACATCTGAGTTTCAGA+TGG | 0.626740 | 2.1:-33267558 | None:intergenic |
CAGGTTGGTGAACTTGATGG+AGG | 0.633962 | 2.1:+33266615 | MS.gene92234:CDS |
ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 2.1:+33266581 | MS.gene92234:CDS |
AGGTTGGTGAACTTGATGGA+GGG | 0.640702 | 2.1:+33266616 | MS.gene92234:CDS |
GAAGAAACAAGGGAGGAAGA+GGG | 0.647199 | 2.1:+33266650 | MS.gene92234:CDS |
TGTTTACAAGGACAATAACA+TGG | 0.678598 | 2.1:+33267825 | MS.gene92234:CDS |
TTGTCCTTGTAAACACCTAG+GGG | 0.684309 | 2.1:-33267817 | None:intergenic |
AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 2.1:+33266596 | MS.gene92234:CDS |
TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 2.1:+33266578 | MS.gene92234:CDS |
GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 2.1:+33266600 | MS.gene92234:CDS |
AGGCGTGTTCGAAGAAACAA+GGG | 0.708111 | 2.1:+33266640 | MS.gene92234:CDS |
CGTGTTCGAAGAAACAAGGG+AGG | 0.726425 | 2.1:+33266643 | MS.gene92234:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTATTTAAATTTCTACA+TGG | + | chr2.1:33267080-33267099 | MS.gene92234:intron | 15.0% |
!! | TATGATTAATTAAAATGCTA+AGG | + | chr2.1:33267861-33267880 | MS.gene92234:intron | 15.0% |
!! | AGATTATCCATGAATTTAAA+AGG | + | chr2.1:33267481-33267500 | MS.gene92234:intron | 20.0% |
!! | TGATTTAATGTCTATTGTAT+AGG | + | chr2.1:33267524-33267543 | MS.gene92234:intron | 20.0% |
!! | TTAATTAATCATACCATGTA+TGG | - | chr2.1:33267854-33267873 | None:intergenic | 20.0% |
!!! | AACATTTCCTTTTAAATTCA+TGG | - | chr2.1:33267491-33267510 | None:intergenic | 20.0% |
!!! | TTACTTTTTGTGACAAAAAT+AGG | + | chr2.1:33267393-33267412 | MS.gene92234:intron | 20.0% |
! | AGTTCATTTAAATGAAATGC+AGG | - | chr2.1:33267628-33267647 | None:intergenic | 25.0% |
! | ATATCAAAATCACAGCATTA+TGG | - | chr2.1:33267947-33267966 | None:intergenic | 25.0% |
! | GTCTTATAAGCTAACTTTAT+TGG | + | chr2.1:33267018-33267037 | MS.gene92234:intron | 25.0% |
! | TATGTAATATTTAAGCCATG+AGG | - | chr2.1:33267279-33267298 | None:intergenic | 25.0% |
! | TATTTCTTGTTCCTTTAACA+TGG | - | chr2.1:33267914-33267933 | None:intergenic | 25.0% |
!! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr2.1:33266543-33266562 | None:intergenic | 25.0% |
!!! | GATATGTTTTTGAGTGTAAA+AGG | + | chr2.1:33267650-33267669 | MS.gene92234:intron | 25.0% |
!!! | TTTGTGATTTTGATTGCAAA+AGG | + | chr2.1:33266923-33266942 | MS.gene92234:intron | 25.0% |
AAAATAGGTTGTGAAACATG+AGG | + | chr2.1:33267408-33267427 | MS.gene92234:intron | 30.0% | |
AAATAGGTTGTGAAACATGA+GGG | + | chr2.1:33267409-33267428 | MS.gene92234:intron | 30.0% | |
AAGCATATTTATGTACCTCA+TGG | + | chr2.1:33267261-33267280 | MS.gene92234:intron | 30.0% | |
AATGTCTATTGTATAGGCTT+TGG | + | chr2.1:33267530-33267549 | MS.gene92234:intron | 30.0% | |
ATGAATTGTTGAAGCAGATT+AGG | + | chr2.1:33266745-33266764 | MS.gene92234:CDS | 30.0% | |
CATTTAAATGAAATGCAGGA+AGG | - | chr2.1:33267624-33267643 | None:intergenic | 30.0% | |
GATTCAAAGACTGAAATAGA+AGG | - | chr2.1:33267980-33267999 | None:intergenic | 30.0% | |
GTACAGAAATTCGAATTCAT+TGG | + | chr2.1:33266517-33266536 | MS.gene92234:CDS | 30.0% | |
TGTTTACAAGGACAATAACA+TGG | + | chr2.1:33267825-33267844 | MS.gene92234:CDS | 30.0% | |
TTCGTTCTTTACCATGTTAA+AGG | + | chr2.1:33267900-33267919 | MS.gene92234:intron | 30.0% | |
! | AATCAGCACTAAACATCTTT+TGG | - | chr2.1:33266884-33266903 | None:intergenic | 30.0% |
!! | CAGTTACTTTCATTTTGACA+GGG | + | chr2.1:33267125-33267144 | MS.gene92234:intron | 30.0% |
!! | TCAGTTACTTTCATTTTGAC+AGG | + | chr2.1:33267124-33267143 | MS.gene92234:intron | 30.0% |
AATAACATGGAAGCCATACA+TGG | + | chr2.1:33267838-33267857 | MS.gene92234:CDS | 35.0% | |
ACCTTTCATCATCATAGAGA+TGG | - | chr2.1:33266988-33267007 | None:intergenic | 35.0% | |
ATTGTCCTTGTAAACACCTA+GGG | - | chr2.1:33267821-33267840 | None:intergenic | 35.0% | |
GATCATGTTACAGAAACGAA+CGG | - | chr2.1:33267460-33267479 | None:intergenic | 35.0% | |
GTGTAAAAGGTTGTCACAAA+TGG | + | chr2.1:33267663-33267682 | MS.gene92234:intron | 35.0% | |
TATTGTCCTTGTAAACACCT+AGG | - | chr2.1:33267822-33267841 | None:intergenic | 35.0% | |
TGCTGATAATCTGTGTTTCA+AGG | + | chr2.1:33267165-33267184 | MS.gene92234:CDS | 35.0% | |
! | TCCATCTCTATGATGATGAA+AGG | + | chr2.1:33266984-33267003 | MS.gene92234:intron | 35.0% |
!! | TAGTTAGCGTTGATAATCGT+AGG | + | chr2.1:33267365-33267384 | MS.gene92234:intron | 35.0% |
!!! | AGTGCTGATTTTGATTGTGT+AGG | + | chr2.1:33266894-33266913 | MS.gene92234:intron | 35.0% |
ATACCTTTGGATCACTTGCA+AGG | + | chr2.1:33267229-33267248 | MS.gene92234:CDS | 40.0% | |
CTGTGTCTGCTAATGACAAT+AGG | + | chr2.1:33266715-33266734 | MS.gene92234:CDS | 40.0% | |
GCTAACATCTGAGTTTCAGA+TGG | - | chr2.1:33267561-33267580 | None:intergenic | 40.0% | |
GCTGTTAACTCTTCAGTTGA+AGG | - | chr2.1:33267689-33267708 | None:intergenic | 40.0% | |
TATCCTTGCAAGTGATCCAA+AGG | - | chr2.1:33267235-33267254 | None:intergenic | 40.0% | |
TGAACAAAAGGATGGATCAG+TGG | + | chr2.1:33266578-33266597 | MS.gene92234:CDS | 40.0% | |
TTGGATCACTTGCAAGGATA+TGG | + | chr2.1:33267235-33267254 | MS.gene92234:CDS | 40.0% | |
TTGTCCTTGTAAACACCTAG+GGG | - | chr2.1:33267820-33267839 | None:intergenic | 40.0% | |
TTGTGCACACAGAACCAAAA+GGG | - | chr2.1:33266694-33266713 | None:intergenic | 40.0% | |
TTGTGTGCTGAACAAAAGGA+TGG | + | chr2.1:33266570-33266589 | MS.gene92234:CDS | 40.0% | |
! | AGTAGTCAGAGGTTTTCTGT+TGG | + | chr2.1:33267730-33267749 | MS.gene92234:CDS | 40.0% |
! | GTAGTCAGAGGTTTTCTGTT+GGG | + | chr2.1:33267731-33267750 | MS.gene92234:CDS | 40.0% |
! | GTCTATTGTATAGGCTTTGG+AGG | + | chr2.1:33267533-33267552 | MS.gene92234:intron | 40.0% |
! | TCCTTTTGTTCAGCACACAA+CGG | - | chr2.1:33266570-33266589 | None:intergenic | 40.0% |
!! | TTGGAAACCCGAAGTGTTTT+GGG | - | chr2.1:33267763-33267782 | None:intergenic | 40.0% |
AAGGCGTGTTCGAAGAAACA+AGG | + | chr2.1:33266639-33266658 | MS.gene92234:CDS | 45.0% | |
ACAAAAGGATGGATCAGTGG+TGG | + | chr2.1:33266581-33266600 | MS.gene92234:CDS | 45.0% | |
AGAGGGATGTTGTGGATTTG+AGG | + | chr2.1:33266667-33266686 | MS.gene92234:CDS | 45.0% | |
AGGCGTGTTCGAAGAAACAA+GGG | + | chr2.1:33266640-33266659 | MS.gene92234:CDS | 45.0% | |
AGGTGATGCATCACAGAGAA+CGG | + | chr2.1:33266785-33266804 | MS.gene92234:CDS | 45.0% | |
ATCACCCCTAGGTGTTTACA+AGG | + | chr2.1:33267813-33267832 | MS.gene92234:CDS | 45.0% | |
CAGATGTTAGCGATGCAAGA+AGG | + | chr2.1:33267570-33267589 | MS.gene92234:CDS | 45.0% | |
CTGCTACACTCACATACCTT+TGG | + | chr2.1:33267216-33267235 | MS.gene92234:CDS | 45.0% | |
CTTGTGCACACAGAACCAAA+AGG | - | chr2.1:33266695-33266714 | None:intergenic | 45.0% | |
GAAGAAACAAGGGAGGAAGA+GGG | + | chr2.1:33266650-33266669 | MS.gene92234:CDS | 45.0% | |
GAAGGAGAGATACTTACACC+AGG | - | chr2.1:33267606-33267625 | None:intergenic | 45.0% | |
GAGATGCTTCTTTCTGTCCA+TGG | + | chr2.1:33267790-33267809 | MS.gene92234:CDS | 45.0% | |
GATGACACCCAAAACACTTC+GGG | + | chr2.1:33267753-33267772 | MS.gene92234:CDS | 45.0% | |
GGATGACACCCAAAACACTT+CGG | + | chr2.1:33267752-33267771 | MS.gene92234:CDS | 45.0% | |
! | ACAGGGAGAACAAGCTTTGT+TGG | + | chr2.1:33267142-33267161 | MS.gene92234:intron | 45.0% |
! | ACTTTATTGGCTGCAAGCTC+AGG | + | chr2.1:33267031-33267050 | MS.gene92234:intron | 45.0% |
! | AGTTACTTTCTTGCCTCAGG+GGG | + | chr2.1:33266947-33266966 | MS.gene92234:intron | 45.0% |
! | CAGCTGAATATGCGTTTTGC+AGG | + | chr2.1:33267705-33267724 | MS.gene92234:intron | 45.0% |
! | CAGTTACTTTCTTGCCTCAG+GGG | + | chr2.1:33266946-33266965 | MS.gene92234:intron | 45.0% |
! | CTTTATTGGCTGCAAGCTCA+GGG | + | chr2.1:33267032-33267051 | MS.gene92234:intron | 45.0% |
! | GCAGTTACTTTCTTGCCTCA+GGG | + | chr2.1:33266945-33266964 | MS.gene92234:intron | 45.0% |
! | TAATGCGATTGAAGCGCTCA+TGG | + | chr2.1:33266821-33266840 | MS.gene92234:CDS | 45.0% |
! | TGTGGATTTGAGGACCCTTT+TGG | + | chr2.1:33266677-33266696 | MS.gene92234:CDS | 45.0% |
! | TTTTGCAGGTGAGTAGTCAG+AGG | + | chr2.1:33267719-33267738 | MS.gene92234:intron | 45.0% |
!! | ACACAGGTTGGTGAACTTGA+TGG | + | chr2.1:33266612-33266631 | MS.gene92234:CDS | 45.0% |
!! | ACAGAAAGAAGCATCTCTCC+AGG | - | chr2.1:33267787-33267806 | None:intergenic | 45.0% |
!! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr2.1:33266765-33266784 | MS.gene92234:CDS | 45.0% |
!! | AGGTTGGTGAACTTGATGGA+GGG | + | chr2.1:33266616-33266635 | MS.gene92234:CDS | 45.0% |
!! | CTTGGAAACCCGAAGTGTTT+TGG | - | chr2.1:33267764-33267783 | None:intergenic | 45.0% |
AAACACCTAGGGGTGATCCA+TGG | - | chr2.1:33267810-33267829 | None:intergenic | 50.0% | |
CAAGAAGGTCTTCTGACTCC+TGG | + | chr2.1:33267585-33267604 | MS.gene92234:CDS | 50.0% | |
CGAAGAAACAAGGGAGGAAG+AGG | + | chr2.1:33266649-33266668 | MS.gene92234:CDS | 50.0% | |
CGTGTTCGAAGAAACAAGGG+AGG | + | chr2.1:33266643-33266662 | MS.gene92234:CDS | 50.0% | |
CTCTGTGATGCATCACCTGA+AGG | - | chr2.1:33266783-33266802 | None:intergenic | 50.0% | |
GCCGTTGTGTGCTGAACAAA+AGG | + | chr2.1:33266566-33266585 | MS.gene92234:CDS | 50.0% | |
GTGGAGAGTAGAACACAGGT+TGG | + | chr2.1:33266600-33266619 | MS.gene92234:CDS | 50.0% | |
TGGTGAACTTGATGGAGGGA+AGG | + | chr2.1:33266620-33266639 | MS.gene92234:CDS | 50.0% | |
! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr2.1:33266596-33266615 | MS.gene92234:CDS | 50.0% |
! | GGCAGTTACTTTCTTGCCTC+AGG | + | chr2.1:33266944-33266963 | MS.gene92234:intron | 50.0% |
!! | AAGAAGCATCTCTCCAGGCT+TGG | - | chr2.1:33267782-33267801 | None:intergenic | 50.0% |
!! | CAGGTTGGTGAACTTGATGG+AGG | + | chr2.1:33266615-33266634 | MS.gene92234:CDS | 50.0% |
!! | CTCATGGTTGGTGCTGGTAA+CGG | + | chr2.1:33266837-33266856 | MS.gene92234:CDS | 50.0% |
AGGGAGGAAGAGGGATGTTG+TGG | + | chr2.1:33266659-33266678 | MS.gene92234:CDS | 55.0% | |
CATACAATCTCGTCCCCCTG+AGG | - | chr2.1:33266963-33266982 | None:intergenic | 55.0% | |
TCTGTCCATGGATCACCCCT+AGG | + | chr2.1:33267802-33267821 | MS.gene92234:CDS | 55.0% | |
! | ACACTTCGGGTTTCCAAGCC+TGG | + | chr2.1:33267766-33267785 | MS.gene92234:CDS | 55.0% |
! | GCGATTGAAGCGCTCATGGT+TGG | + | chr2.1:33266825-33266844 | MS.gene92234:CDS | 55.0% |
! | GAAGCGCTCATGGTTGGTGC+TGG | + | chr2.1:33266831-33266850 | MS.gene92234:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 33266501 | 33268012 | 33266501 | ID=MS.gene92234 |
chr2.1 | mRNA | 33266501 | 33268012 | 33266501 | ID=MS.gene92234.t1;Parent=MS.gene92234 |
chr2.1 | exon | 33266501 | 33266858 | 33266501 | ID=MS.gene92234.t1.exon1;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33266501 | 33266858 | 33266501 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
chr2.1 | exon | 33266949 | 33266977 | 33266949 | ID=MS.gene92234.t1.exon2;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33266949 | 33266977 | 33266949 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
chr2.1 | exon | 33267146 | 33267256 | 33267146 | ID=MS.gene92234.t1.exon3;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33267146 | 33267256 | 33267146 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
chr2.1 | exon | 33267546 | 33267608 | 33267546 | ID=MS.gene92234.t1.exon4;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33267546 | 33267608 | 33267546 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
chr2.1 | exon | 33267727 | 33267859 | 33267727 | ID=MS.gene92234.t1.exon5;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33267727 | 33267859 | 33267727 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
chr2.1 | exon | 33267990 | 33268012 | 33267990 | ID=MS.gene92234.t1.exon6;Parent=MS.gene92234.t1 |
chr2.1 | CDS | 33267990 | 33268012 | 33267990 | ID=cds.MS.gene92234.t1;Parent=MS.gene92234.t1 |
Gene Sequence |
Protein sequence |