Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92456.t1 | XP_013454922.1 | 82.6 | 523 | 87 | 1 | 1 | 523 | 1 | 519 | 1.70E-164 | 589.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92456.t1 | Q7XJK8 | 28.7 | 223 | 145 | 5 | 6 | 219 | 2 | 219 | 4.3e-15 | 84.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92456.t1 | A0A072USW1 | 82.6 | 523 | 87 | 1 | 1 | 523 | 1 | 519 | 1.2e-164 | 589.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92456.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92456.t1 | MTR_4g019670 | 82.792 | 523 | 86 | 1 | 1 | 523 | 1 | 519 | 0.0 | 826 |
| MS.gene92456.t1 | MTR_7g106510 | 82.634 | 524 | 69 | 5 | 1 | 523 | 1 | 503 | 0.0 | 813 |
| MS.gene92456.t1 | MTR_3g093900 | 47.921 | 505 | 234 | 9 | 1 | 496 | 1 | 485 | 2.01e-133 | 399 |
| MS.gene92456.t1 | MTR_3g093900 | 35.784 | 204 | 94 | 9 | 215 | 395 | 329 | 518 | 8.14e-14 | 74.3 |
| MS.gene92456.t1 | MTR_8g467500 | 53.333 | 270 | 122 | 1 | 13 | 282 | 13 | 278 | 5.38e-74 | 236 |
| MS.gene92456.t1 | MTR_5g075380 | 33.333 | 156 | 104 | 0 | 7 | 162 | 4 | 159 | 5.72e-24 | 98.6 |
| MS.gene92456.t1 | MTR_3g466980 | 33.333 | 165 | 106 | 2 | 1 | 164 | 1 | 162 | 3.35e-23 | 98.2 |
| MS.gene92456.t1 | MTR_8g036130 | 37.405 | 131 | 80 | 1 | 4 | 132 | 1 | 131 | 6.04e-22 | 95.5 |
| MS.gene92456.t1 | MTR_3g466830 | 31.613 | 155 | 106 | 0 | 6 | 160 | 2 | 156 | 1.24e-21 | 92.0 |
| MS.gene92456.t1 | MTR_4g032620 | 33.333 | 156 | 93 | 2 | 6 | 155 | 3 | 153 | 1.45e-21 | 94.0 |
| MS.gene92456.t1 | MTR_4g031910 | 37.179 | 156 | 94 | 2 | 1 | 155 | 1 | 153 | 2.00e-19 | 87.8 |
| MS.gene92456.t1 | MTR_2g016210 | 29.677 | 155 | 108 | 1 | 7 | 160 | 4 | 158 | 1.19e-18 | 85.9 |
| MS.gene92456.t1 | MTR_3g466890 | 30.065 | 153 | 106 | 1 | 6 | 157 | 2 | 154 | 1.57e-18 | 83.2 |
| MS.gene92456.t1 | MTR_1g090710 | 33.913 | 115 | 75 | 1 | 6 | 120 | 3 | 116 | 2.09e-18 | 82.8 |
| MS.gene92456.t1 | MTR_3g065100 | 31.646 | 158 | 108 | 0 | 4 | 161 | 1 | 158 | 2.68e-18 | 84.7 |
| MS.gene92456.t1 | MTR_3g031240 | 29.915 | 117 | 82 | 0 | 6 | 122 | 3 | 119 | 1.69e-17 | 80.9 |
| MS.gene92456.t1 | MTR_4g032260 | 39.583 | 96 | 58 | 0 | 37 | 132 | 34 | 129 | 3.62e-17 | 79.3 |
| MS.gene92456.t1 | MTR_2g035610 | 36.800 | 125 | 76 | 1 | 1 | 125 | 1 | 122 | 8.90e-17 | 77.0 |
| MS.gene92456.t1 | MTR_5g047580 | 35.833 | 120 | 73 | 2 | 1 | 120 | 1 | 116 | 1.32e-16 | 77.4 |
| MS.gene92456.t1 | MTR_4g032290 | 29.870 | 154 | 93 | 3 | 37 | 175 | 34 | 187 | 7.65e-16 | 77.4 |
| MS.gene92456.t1 | MTR_4g063790 | 26.582 | 158 | 109 | 2 | 6 | 159 | 3 | 157 | 8.98e-16 | 75.5 |
| MS.gene92456.t1 | MTR_4g028800 | 42.857 | 70 | 38 | 1 | 7 | 76 | 4 | 71 | 1.15e-15 | 72.4 |
| MS.gene92456.t1 | MTR_3g031100 | 29.060 | 117 | 83 | 0 | 6 | 122 | 3 | 119 | 1.82e-15 | 76.6 |
| MS.gene92456.t1 | MTR_1g090783 | 27.586 | 145 | 104 | 1 | 6 | 150 | 2 | 145 | 3.46e-15 | 73.6 |
| MS.gene92456.t1 | MTR_1g077390 | 29.167 | 144 | 93 | 3 | 6 | 141 | 3 | 145 | 3.58e-15 | 73.6 |
| MS.gene92456.t1 | MTR_1g090697 | 33.333 | 120 | 76 | 2 | 1 | 120 | 1 | 116 | 7.79e-15 | 72.4 |
| MS.gene92456.t1 | MTR_3g466930 | 31.452 | 124 | 84 | 1 | 35 | 157 | 2 | 125 | 3.70e-14 | 69.7 |
| MS.gene92456.t1 | MTR_3g466900 | 30.645 | 124 | 85 | 1 | 35 | 157 | 2 | 125 | 4.03e-14 | 69.7 |
| MS.gene92456.t1 | MTR_1g084950 | 37.190 | 121 | 71 | 2 | 4 | 120 | 1 | 120 | 2.32e-13 | 68.2 |
| MS.gene92456.t1 | MTR_4g028720 | 35.433 | 127 | 81 | 1 | 6 | 132 | 3 | 128 | 7.50e-13 | 67.0 |
| MS.gene92456.t1 | MTR_1g077300 | 30.723 | 166 | 97 | 4 | 6 | 167 | 3 | 154 | 1.22e-12 | 66.2 |
| MS.gene92456.t1 | MTR_1g077320 | 34.783 | 115 | 74 | 1 | 6 | 120 | 3 | 116 | 1.30e-12 | 66.2 |
| MS.gene92456.t1 | MTR_3g467080 | 28.205 | 117 | 84 | 0 | 6 | 122 | 3 | 119 | 2.66e-12 | 65.5 |
| MS.gene92456.t1 | MTR_7g011950 | 33.333 | 129 | 85 | 1 | 4 | 132 | 1 | 128 | 2.72e-12 | 65.5 |
| MS.gene92456.t1 | MTR_6g005450 | 27.397 | 146 | 91 | 5 | 8 | 147 | 5 | 141 | 6.79e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92456.t1 | AT1G65300 | 36.522 | 115 | 73 | 0 | 6 | 120 | 2 | 116 | 3.65e-20 | 91.3 |
| MS.gene92456.t1 | AT2G40210 | 29.341 | 167 | 115 | 2 | 4 | 170 | 1 | 164 | 7.06e-20 | 92.0 |
| MS.gene92456.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 9.15e-18 | 83.6 |
| MS.gene92456.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 1.02e-17 | 83.6 |
| MS.gene92456.t1 | AT3G05860 | 31.126 | 151 | 99 | 3 | 1 | 150 | 1 | 147 | 3.53e-17 | 80.9 |
| MS.gene92456.t1 | AT5G26650 | 31.579 | 133 | 89 | 2 | 7 | 139 | 2 | 132 | 5.55e-17 | 83.2 |
| MS.gene92456.t1 | AT1G31630 | 33.043 | 115 | 76 | 1 | 6 | 120 | 2 | 115 | 6.63e-16 | 79.7 |
| MS.gene92456.t1 | AT5G06500 | 30.000 | 150 | 104 | 1 | 6 | 155 | 3 | 151 | 6.77e-16 | 77.8 |
| MS.gene92456.t1 | AT5G27960 | 30.075 | 133 | 91 | 2 | 7 | 139 | 2 | 132 | 7.49e-16 | 79.0 |
| MS.gene92456.t1 | AT1G22590 | 29.358 | 109 | 74 | 1 | 6 | 114 | 3 | 108 | 2.22e-15 | 74.3 |
| MS.gene92456.t1 | AT1G31640 | 32.174 | 115 | 77 | 1 | 6 | 120 | 2 | 115 | 3.97e-15 | 78.2 |
| MS.gene92456.t1 | AT1G65330 | 32.743 | 113 | 76 | 0 | 8 | 120 | 4 | 116 | 4.57e-15 | 76.3 |
| MS.gene92456.t1 | AT5G26630 | 34.637 | 179 | 106 | 5 | 1 | 177 | 1 | 170 | 6.07e-15 | 74.3 |
| MS.gene92456.t1 | AT5G48670 | 36.134 | 119 | 76 | 0 | 4 | 122 | 1 | 119 | 8.33e-15 | 75.9 |
| MS.gene92456.t1 | AT2G28700 | 27.941 | 204 | 134 | 6 | 4 | 203 | 1 | 195 | 1.28e-14 | 75.5 |
| MS.gene92456.t1 | AT2G15660 | 30.636 | 173 | 99 | 7 | 5 | 171 | 3 | 160 | 7.86e-14 | 72.0 |
| MS.gene92456.t1 | AT5G27810 | 32.184 | 87 | 59 | 0 | 34 | 120 | 3 | 89 | 6.90e-11 | 60.1 |
Find 105 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTTTCTCGAGGAAATA+TGG | 0.189341 | 7.3:+76355043 | MS.gene92456:CDS |
| TTGCCTCCTCAAGGATATTT+TGG | 0.199048 | 7.3:+76355140 | MS.gene92456:CDS |
| AGTATTATTCTCAATCAATT+TGG | 0.203967 | 7.3:-76354175 | None:intergenic |
| TTGGCTAATCAAGTCGATTT+TGG | 0.205852 | 7.3:+76354861 | MS.gene92456:CDS |
| AACAATATAGGTAGCAATAT+TGG | 0.211965 | 7.3:+76355077 | MS.gene92456:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7.3:-76355385 | None:intergenic |
| TTGACTCAAACCTGGTTATT+AGG | 0.247950 | 7.3:-76354350 | None:intergenic |
| GATTGTCACCTGCTCCATTT+TGG | 0.265823 | 7.3:-76354241 | None:intergenic |
| GAAAGGGTTGTTCACCAAAA+TGG | 0.296295 | 7.3:+76354227 | MS.gene92456:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7.3:+76354470 | MS.gene92456:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.312296 | 7.3:+76354737 | MS.gene92456:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.334552 | 7.3:+76354276 | MS.gene92456:CDS |
| GGGCATTTCATTAACAATAT+AGG | 0.343278 | 7.3:+76355065 | MS.gene92456:CDS |
| ATGACAACATAGATAACATT+TGG | 0.344877 | 7.3:+76355303 | MS.gene92456:CDS |
| AATGGTGATGGGGTACATTC+TGG | 0.370012 | 7.3:+76354687 | MS.gene92456:CDS |
| ACAATATAGGTAGCAATATT+GGG | 0.381596 | 7.3:+76355078 | MS.gene92456:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7.3:+76354277 | MS.gene92456:CDS |
| GTGATACAAAACCATCAATA+TGG | 0.392745 | 7.3:+76354304 | MS.gene92456:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7.3:+76355272 | MS.gene92456:CDS |
| TTTGAAGTTCAGGGGAACTT+TGG | 0.396318 | 7.3:+76355494 | MS.gene92456:CDS |
| CAGGTTTGAGTCAATGTCAT+TGG | 0.398460 | 7.3:+76354359 | MS.gene92456:CDS |
| AACTTTGGCAGCAATATTGA+TGG | 0.399013 | 7.3:+76355611 | MS.gene92456:CDS |
| AATTATTCCGAAGGAAATCC+AGG | 0.399449 | 7.3:-76355695 | None:intergenic |
| CTTCAACCCTGGATTTCCTT+CGG | 0.403734 | 7.3:+76355688 | MS.gene92456:CDS |
| GTAGGAGATGGCCATATTGA+TGG | 0.410732 | 7.3:-76354315 | None:intergenic |
| CTACCACATGCAAATTTGAA+TGG | 0.411798 | 7.3:+76355218 | MS.gene92456:CDS |
| TTTCTTTCTCGAGGAAATAT+GGG | 0.416903 | 7.3:+76355044 | MS.gene92456:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.421537 | 7.3:+76354688 | MS.gene92456:CDS |
| GGCAGCAATATTGATGGAGA+TGG | 0.423343 | 7.3:+76355617 | MS.gene92456:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7.3:+76354471 | MS.gene92456:CDS |
| TTGTCTAAAGTAAAAGATAT+TGG | 0.434434 | 7.3:-76354666 | None:intergenic |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7.3:+76354702 | MS.gene92456:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7.3:+76354282 | MS.gene92456:CDS |
| CCAAATCTAACAAGGGTTGT+TGG | 0.449662 | 7.3:-76354737 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7.3:+76355161 | MS.gene92456:CDS |
| CCTCCACCTCCAGATCTTAG+TGG | 0.468340 | 7.3:+76354822 | MS.gene92456:CDS |
| ATATCAACACCACCATTGCT+TGG | 0.469029 | 7.3:-76355569 | None:intergenic |
| TACCACATGCAAATTTGAAT+GGG | 0.473760 | 7.3:+76355219 | MS.gene92456:CDS |
| TTTACTTTAGACAATGGTGA+TGG | 0.480639 | 7.3:+76354675 | MS.gene92456:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7.3:+76355275 | MS.gene92456:CDS |
| TACAAGAGCAACTTCAACCC+TGG | 0.483870 | 7.3:+76355677 | MS.gene92456:CDS |
| GAGGTCTAGGCATTTAGAAA+AGG | 0.487608 | 7.3:+76354605 | MS.gene92456:CDS |
| GAAGTTCAGGGGAACTTTGG+AGG | 0.495790 | 7.3:+76355497 | MS.gene92456:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.501169 | 7.3:+76354317 | MS.gene92456:CDS |
| GATGGAGGAGGATTATTAAG+AGG | 0.505755 | 7.3:-76354636 | None:intergenic |
| AGATCACTAGAAAGAGGTCT+AGG | 0.508379 | 7.3:+76354592 | MS.gene92456:CDS |
| CAATCACCACCACTAAGATC+TGG | 0.508447 | 7.3:-76354831 | None:intergenic |
| CGCTATAAGAAAAGATTGAA+AGG | 0.508733 | 7.3:+76354210 | MS.gene92456:CDS |
| TTACTTTAGACAATGGTGAT+GGG | 0.517853 | 7.3:+76354676 | MS.gene92456:CDS |
| TGAGAATAATACTCAAAGAA+AGG | 0.521008 | 7.3:+76354185 | MS.gene92456:CDS |
| CATGATATGTTTCTTTCTCG+AGG | 0.526198 | 7.3:+76355035 | MS.gene92456:CDS |
| AACAACCATGGAAGTAGCAT+GGG | 0.534265 | 7.3:+76354795 | MS.gene92456:CDS |
| GCATCCCCATGCTACTTCCA+TGG | 0.535942 | 7.3:-76354800 | None:intergenic |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7.3:+76354233 | MS.gene92456:CDS |
| TTTCTTGACCAAATCTAACA+AGG | 0.560758 | 7.3:-76354745 | None:intergenic |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7.3:-76354327 | None:intergenic |
| AAATTAAGATCACTAGAAAG+AGG | 0.562753 | 7.3:+76354586 | MS.gene92456:CDS |
| TGGTGGTGATTGTGATAACT+TGG | 0.565716 | 7.3:+76354842 | MS.gene92456:CDS |
| CCACTAAGATCTGGAGGTGG+AGG | 0.566872 | 7.3:-76354822 | None:intergenic |
| CAACATGCAAATTTGAGTGC+TGG | 0.569295 | 7.3:+76355329 | MS.gene92456:CDS |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7.3:+76354320 | MS.gene92456:CDS |
| TACTTTAGACAATGGTGATG+GGG | 0.572598 | 7.3:+76354677 | MS.gene92456:CDS |
| TAATAATCCTCCTCCATCGT+TGG | 0.573169 | 7.3:+76354641 | MS.gene92456:CDS |
| ATTGGTGCCAACGATGGAGG+AGG | 0.576273 | 7.3:-76354648 | None:intergenic |
| CAATGACATTGACTCAAACC+TGG | 0.576547 | 7.3:-76354358 | None:intergenic |
| TAACAACCATGGAAGTAGCA+TGG | 0.577578 | 7.3:+76354794 | MS.gene92456:CDS |
| AAAGATATTGGTGCCAACGA+TGG | 0.578886 | 7.3:-76354654 | None:intergenic |
| GTAGGTGTGTTGCCTCCTCA+AGG | 0.582180 | 7.3:+76355131 | MS.gene92456:CDS |
| GCTATAAGAAAAGATTGAAA+GGG | 0.593678 | 7.3:+76354211 | MS.gene92456:CDS |
| TGGTGATGGGGTACATTCTG+GGG | 0.594600 | 7.3:+76354689 | MS.gene92456:CDS |
| GATATTGGTGCCAACGATGG+AGG | 0.597015 | 7.3:-76354651 | None:intergenic |
| GACAATCTTATGCGGCATTG+AGG | 0.598018 | 7.3:+76354257 | MS.gene92456:CDS |
| GCAGCAATATTGATGGAGAT+GGG | 0.598875 | 7.3:+76355618 | MS.gene92456:CDS |
| TTCTTGACCAAATCTAACAA+GGG | 0.600256 | 7.3:-76354744 | None:intergenic |
| CCAACACTAGGATTTGTATG+TGG | 0.605205 | 7.3:-76355440 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7.3:+76355560 | MS.gene92456:CDS |
| AAAGTTGATCAAATGAGCAG+TGG | 0.611776 | 7.3:+76354765 | MS.gene92456:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7.3:+76355557 | MS.gene92456:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7.3:+76354924 | MS.gene92456:CDS |
| CCACATACAAATCCTAGTGT+TGG | 0.620141 | 7.3:+76355440 | MS.gene92456:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7.3:-76354333 | None:intergenic |
| TTCCCATTCAAATTTGCATG+TGG | 0.620497 | 7.3:-76355221 | None:intergenic |
| CCACCTCCAGATCTTAGTGG+TGG | 0.622713 | 7.3:+76354825 | MS.gene92456:CDS |
| ATTATTCCGAAGGAAATCCA+GGG | 0.624169 | 7.3:-76355694 | None:intergenic |
| ACATTACTGGTAGCAACGCA+AGG | 0.624653 | 7.3:+76355192 | MS.gene92456:CDS |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7.3:+76354921 | MS.gene92456:CDS |
| GAAAATCCTAGTGGTGGTGT+AGG | 0.627650 | 7.3:+76355113 | MS.gene92456:CDS |
| TTCTTTCTCGAGGAAATATG+GGG | 0.630137 | 7.3:+76355045 | MS.gene92456:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7.3:+76355005 | MS.gene92456:CDS |
| ATGCATCAAATTGAAAACGA+AGG | 0.641960 | 7.3:+76354501 | MS.gene92456:CDS |
| ACACTAGGATTTGTATGTGG+TGG | 0.642124 | 7.3:-76355437 | None:intergenic |
| AACACACCTACACCACCACT+AGG | 0.650603 | 7.3:-76355119 | None:intergenic |
| CCTCCAAAATATCCTTGAGG+AGG | 0.656666 | 7.3:-76355143 | None:intergenic |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7.3:+76355528 | MS.gene92456:CDS |
| ATGCGGCATTGAGGCATGTG+CGG | 0.658684 | 7.3:+76354266 | MS.gene92456:CDS |
| TGACCTCCAAAATATCCTTG+AGG | 0.660910 | 7.3:-76355146 | None:intergenic |
| TGGCTGAAGACCTAATAACC+AGG | 0.668231 | 7.3:+76354340 | MS.gene92456:CDS |
| CCACCACTAAGATCTGGAGG+TGG | 0.674000 | 7.3:-76354825 | None:intergenic |
| TCACCACCACTAAGATCTGG+AGG | 0.674015 | 7.3:-76354828 | None:intergenic |
| TCACATGAAAATCCTAGTGG+TGG | 0.674534 | 7.3:+76355107 | MS.gene92456:CDS |
| ACAGCAACATTACCAACACT+AGG | 0.677687 | 7.3:-76355452 | None:intergenic |
| CAATCACATGAAAATCCTAG+TGG | 0.684612 | 7.3:+76355104 | MS.gene92456:CDS |
| AGTGGTTTCAATAACAACCA+TGG | 0.696939 | 7.3:+76354783 | MS.gene92456:CDS |
| GAGCAGGTGACAATCTTATG+CGG | 0.699387 | 7.3:+76354249 | MS.gene92456:CDS |
| ACAACCATGGAAGTAGCATG+GGG | 0.707731 | 7.3:+76354796 | MS.gene92456:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGATAACAACTTTTATAA+CGG | + | chr7.3:76354888-76354907 | MS.gene92456:CDS | 15.0% |
| !! | AGTATTATTCTCAATCAATT+TGG | - | chr7.3:76354178-76354197 | None:intergenic | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | chr7.3:76355388-76355407 | None:intergenic | 20.0% |
| !!! | AATTTTCATCAAAACAACTT+TGG | + | chr7.3:76355596-76355615 | MS.gene92456:CDS | 20.0% |
| !!! | ATATCTTTTACTTTAGACAA+TGG | + | chr7.3:76354669-76354688 | MS.gene92456:CDS | 20.0% |
| !!! | TTGTCTAAAGTAAAAGATAT+TGG | - | chr7.3:76354669-76354688 | None:intergenic | 20.0% |
| ! | AAATTAAGATCACTAGAAAG+AGG | + | chr7.3:76354586-76354605 | MS.gene92456:CDS | 25.0% |
| ! | AACAATATAGGTAGCAATAT+TGG | + | chr7.3:76355077-76355096 | MS.gene92456:CDS | 25.0% |
| ! | ACAATATAGGTAGCAATATT+GGG | + | chr7.3:76355078-76355097 | MS.gene92456:CDS | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | chr7.3:76354470-76354489 | MS.gene92456:CDS | 25.0% |
| ! | ATGACAACATAGATAACATT+TGG | + | chr7.3:76355303-76355322 | MS.gene92456:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | chr7.3:76354471-76354490 | MS.gene92456:CDS | 25.0% |
| ! | GCTATAAGAAAAGATTGAAA+GGG | + | chr7.3:76354211-76354230 | MS.gene92456:CDS | 25.0% |
| ! | TATCCTTCAAAAAAGTCAAT+TGG | - | chr7.3:76354410-76354429 | None:intergenic | 25.0% |
| ! | TGAGAATAATACTCAAAGAA+AGG | + | chr7.3:76354185-76354204 | MS.gene92456:CDS | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | chr7.3:76355272-76355291 | MS.gene92456:CDS | 25.0% |
| !! | GAAAATTTGGAAGATTTTGA+TGG | + | chr7.3:76354969-76354988 | MS.gene92456:CDS | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | chr7.3:76355263-76355282 | None:intergenic | 25.0% |
| !!! | AAGAAAATTTTGAAGTTCAG+GGG | + | chr7.3:76355486-76355505 | MS.gene92456:CDS | 25.0% |
| !!! | ATTGACTTTTTTGAAGGATA+AGG | + | chr7.3:76354410-76354429 | MS.gene92456:CDS | 25.0% |
| !!! | CAAGAAAATTTTGAAGTTCA+GGG | + | chr7.3:76355485-76355504 | MS.gene92456:CDS | 25.0% |
| !!! | TCAAGAAAATTTTGAAGTTC+AGG | + | chr7.3:76355484-76355503 | MS.gene92456:CDS | 25.0% |
| !!! | TGCGTTTTTTCAAGAAAATT+TGG | + | chr7.3:76354956-76354975 | MS.gene92456:CDS | 25.0% |
| !!! | TTGACTTTTTTGAAGGATAA+GGG | + | chr7.3:76354411-76354430 | MS.gene92456:CDS | 25.0% |
| ATGCATCAAATTGAAAACGA+AGG | + | chr7.3:76354501-76354520 | MS.gene92456:CDS | 30.0% | |
| CGCTATAAGAAAAGATTGAA+AGG | + | chr7.3:76354210-76354229 | MS.gene92456:CDS | 30.0% | |
| GGGCATTTCATTAACAATAT+AGG | + | chr7.3:76355065-76355084 | MS.gene92456:CDS | 30.0% | |
| GTGATACAAAACCATCAATA+TGG | + | chr7.3:76354304-76354323 | MS.gene92456:CDS | 30.0% | |
| TACCACATGCAAATTTGAAT+GGG | + | chr7.3:76355219-76355238 | MS.gene92456:CDS | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | chr7.3:76355005-76355024 | MS.gene92456:CDS | 30.0% | |
| TTACTTTAGACAATGGTGAT+GGG | + | chr7.3:76354676-76354695 | MS.gene92456:CDS | 30.0% | |
| TTCTTGACCAAATCTAACAA+GGG | - | chr7.3:76354747-76354766 | None:intergenic | 30.0% | |
| TTGCTTCCTCAAGAAAAATT+TGG | + | chr7.3:76355359-76355378 | MS.gene92456:CDS | 30.0% | |
| TTTACTTTAGACAATGGTGA+TGG | + | chr7.3:76354675-76354694 | MS.gene92456:CDS | 30.0% | |
| TTTCTTGACCAAATCTAACA+AGG | - | chr7.3:76354748-76354767 | None:intergenic | 30.0% | |
| TTTCTTTCTCGAGGAAATAT+GGG | + | chr7.3:76355044-76355063 | MS.gene92456:CDS | 30.0% | |
| ! | AACAACTTTTATAACGGCAT+GGG | + | chr7.3:76354894-76354913 | MS.gene92456:CDS | 30.0% |
| ! | TAACAACTTTTATAACGGCA+TGG | + | chr7.3:76354893-76354912 | MS.gene92456:CDS | 30.0% |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | chr7.3:76355260-76355279 | None:intergenic | 30.0% |
| !!! | TGACCAATTGACTTTTTTGA+AGG | + | chr7.3:76354404-76354423 | MS.gene92456:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | chr7.3:76354455-76354474 | None:intergenic | 30.0% |
| AACTTTGGCAGCAATATTGA+TGG | + | chr7.3:76355611-76355630 | MS.gene92456:CDS | 35.0% | |
| AGTGGTTTCAATAACAACCA+TGG | + | chr7.3:76354783-76354802 | MS.gene92456:CDS | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | chr7.3:76355528-76355547 | MS.gene92456:CDS | 35.0% | |
| CAATCACATGAAAATCCTAG+TGG | + | chr7.3:76355104-76355123 | MS.gene92456:CDS | 35.0% | |
| CATGATATGTTTCTTTCTCG+AGG | + | chr7.3:76355035-76355054 | MS.gene92456:CDS | 35.0% | |
| CTACCACATGCAAATTTGAA+TGG | + | chr7.3:76355218-76355237 | MS.gene92456:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | chr7.3:76355275-76355294 | MS.gene92456:CDS | 35.0% | |
| GTTTCTTTCTCGAGGAAATA+TGG | + | chr7.3:76355043-76355062 | MS.gene92456:CDS | 35.0% | |
| TTCCCATTCAAATTTGCATG+TGG | - | chr7.3:76355224-76355243 | None:intergenic | 35.0% | |
| TTCTTTCTCGAGGAAATATG+GGG | + | chr7.3:76355045-76355064 | MS.gene92456:CDS | 35.0% | |
| TTGACTCAAACCTGGTTATT+AGG | - | chr7.3:76354353-76354372 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | chr7.3:76354930-76354949 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | chr7.3:76354765-76354784 | MS.gene92456:CDS | 35.0% |
| ! | TACTTTAGACAATGGTGATG+GGG | + | chr7.3:76354677-76354696 | MS.gene92456:CDS | 35.0% |
| ! | TGGTCTCCAAATTTTTCTTG+AGG | - | chr7.3:76355368-76355387 | None:intergenic | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+TGG | + | chr7.3:76355179-76355198 | MS.gene92456:CDS | 35.0% |
| !! | GGAAGATTTTGATGGTATCA+TGG | + | chr7.3:76354977-76354996 | MS.gene92456:CDS | 35.0% |
| !! | TTGGCTAATCAAGTCGATTT+TGG | + | chr7.3:76354861-76354880 | MS.gene92456:CDS | 35.0% |
| !!! | ATTGATGGTTTTGTATCACC+TGG | - | chr7.3:76354303-76354322 | None:intergenic | 35.0% |
| AACAACCATGGAAGTAGCAT+GGG | + | chr7.3:76354795-76354814 | MS.gene92456:CDS | 40.0% | |
| ACACTAGGATTTGTATGTGG+TGG | - | chr7.3:76355440-76355459 | None:intergenic | 40.0% | |
| ACAGCAACATTACCAACACT+AGG | - | chr7.3:76355455-76355474 | None:intergenic | 40.0% | |
| AGATCACTAGAAAGAGGTCT+AGG | + | chr7.3:76354592-76354611 | MS.gene92456:CDS | 40.0% | |
| ATATCAACACCACCATTGCT+TGG | - | chr7.3:76355572-76355591 | None:intergenic | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | chr7.3:76354317-76354336 | MS.gene92456:CDS | 40.0% | |
| CAACATGCAAATTTGAGTGC+TGG | + | chr7.3:76355329-76355348 | MS.gene92456:CDS | 40.0% | |
| CAGGTTTGAGTCAATGTCAT+TGG | + | chr7.3:76354359-76354378 | MS.gene92456:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | chr7.3:76355560-76355579 | MS.gene92456:CDS | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | chr7.3:76354740-76354759 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | chr7.3:76354737-76354756 | MS.gene92456:CDS | 40.0% | |
| CCAACACTAGGATTTGTATG+TGG | - | chr7.3:76355443-76355462 | None:intergenic | 40.0% | |
| CCACATACAAATCCTAGTGT+TGG | + | chr7.3:76355440-76355459 | MS.gene92456:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | chr7.3:76355557-76355576 | MS.gene92456:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | chr7.3:76354921-76354940 | MS.gene92456:CDS | 40.0% | |
| GAAAGGGTTGTTCACCAAAA+TGG | + | chr7.3:76354227-76354246 | MS.gene92456:CDS | 40.0% | |
| GAGGTCTAGGCATTTAGAAA+AGG | + | chr7.3:76354605-76354624 | MS.gene92456:CDS | 40.0% | |
| GATGGAGGAGGATTATTAAG+AGG | - | chr7.3:76354639-76354658 | None:intergenic | 40.0% | |
| GCAGCAATATTGATGGAGAT+GGG | + | chr7.3:76355618-76355637 | MS.gene92456:CDS | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | chr7.3:76354794-76354813 | MS.gene92456:CDS | 40.0% | |
| TAATAATCCTCCTCCATCGT+TGG | + | chr7.3:76354641-76354660 | MS.gene92456:CDS | 40.0% | |
| TCACATGAAAATCCTAGTGG+TGG | + | chr7.3:76355107-76355126 | MS.gene92456:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | chr7.3:76354924-76354943 | MS.gene92456:CDS | 40.0% | |
| TGACCTCCAAAATATCCTTG+AGG | - | chr7.3:76355149-76355168 | None:intergenic | 40.0% | |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | chr7.3:76355560-76355579 | None:intergenic | 40.0% |
| ! | TGGTGGTGATTGTGATAACT+TGG | + | chr7.3:76354842-76354861 | MS.gene92456:CDS | 40.0% |
| ! | TTGCCTCCTCAAGGATATTT+TGG | + | chr7.3:76355140-76355159 | MS.gene92456:CDS | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | chr7.3:76355557-76355576 | None:intergenic | 40.0% |
| ! | TTTGAAGTTCAGGGGAACTT+TGG | + | chr7.3:76355494-76355513 | MS.gene92456:CDS | 40.0% |
| !! | AAAGATATTGGTGCCAACGA+TGG | - | chr7.3:76354657-76354676 | None:intergenic | 40.0% |
| !! | CAATGACATTGACTCAAACC+TGG | - | chr7.3:76354361-76354380 | None:intergenic | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | chr7.3:76354702-76354721 | MS.gene92456:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | chr7.3:76354924-76354943 | None:intergenic | 40.0% |
| ACAACCATGGAAGTAGCATG+GGG | + | chr7.3:76354796-76354815 | MS.gene92456:CDS | 45.0% | |
| ACATTACTGGTAGCAACGCA+AGG | + | chr7.3:76355192-76355211 | MS.gene92456:CDS | 45.0% | |
| CAATCACCACCACTAAGATC+TGG | - | chr7.3:76354834-76354853 | None:intergenic | 45.0% | |
| CCTCCAAAATATCCTTGAGG+AGG | - | chr7.3:76355146-76355165 | None:intergenic | 45.0% | |
| CTTCAACCCTGGATTTCCTT+CGG | + | chr7.3:76355688-76355707 | MS.gene92456:CDS | 45.0% | |
| GACAATCTTATGCGGCATTG+AGG | + | chr7.3:76354257-76354276 | MS.gene92456:CDS | 45.0% | |
| GAGCAGGTGACAATCTTATG+CGG | + | chr7.3:76354249-76354268 | MS.gene92456:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | chr7.3:76355161-76355180 | MS.gene92456:CDS | 45.0% | |
| GGCAGCAATATTGATGGAGA+TGG | + | chr7.3:76355617-76355636 | MS.gene92456:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | chr7.3:76354318-76354337 | None:intergenic | 45.0% | |
| GTTGTTCACCAAAATGGAGC+AGG | + | chr7.3:76354233-76354252 | MS.gene92456:CDS | 45.0% | |
| TACAAGAGCAACTTCAACCC+TGG | + | chr7.3:76355677-76355696 | MS.gene92456:CDS | 45.0% | |
| TGGCTGAAGACCTAATAACC+AGG | + | chr7.3:76354340-76354359 | MS.gene92456:CDS | 45.0% | |
| ! | GAAAATCCTAGTGGTGGTGT+AGG | + | chr7.3:76355113-76355132 | MS.gene92456:CDS | 45.0% |
| ! | GATTGTCACCTGCTCCATTT+TGG | - | chr7.3:76354244-76354263 | None:intergenic | 45.0% |
| !! | AATGGTGATGGGGTACATTC+TGG | + | chr7.3:76354687-76354706 | MS.gene92456:CDS | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | chr7.3:76354688-76354707 | MS.gene92456:CDS | 45.0% |
| !! | CCTCCTCAAGGATATTTTGG+AGG | + | chr7.3:76355143-76355162 | MS.gene92456:CDS | 45.0% |
| AACACACCTACACCACCACT+AGG | - | chr7.3:76355122-76355141 | None:intergenic | 50.0% | |
| AATATGGCCATCTCCTACGG+TGG | + | chr7.3:76354320-76354339 | MS.gene92456:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | chr7.3:76354277-76354296 | MS.gene92456:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | chr7.3:76354336-76354355 | None:intergenic | 50.0% | |
| GAAGTTCAGGGGAACTTTGG+AGG | + | chr7.3:76355497-76355516 | MS.gene92456:CDS | 50.0% | |
| TCACCACCACTAAGATCTGG+AGG | - | chr7.3:76354831-76354850 | None:intergenic | 50.0% | |
| !! | GATATTGGTGCCAACGATGG+AGG | - | chr7.3:76354654-76354673 | None:intergenic | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | chr7.3:76354689-76354708 | MS.gene92456:CDS | 50.0% |
| CCACCACTAAGATCTGGAGG+TGG | - | chr7.3:76354828-76354847 | None:intergenic | 55.0% | |
| CCACCTCCAGATCTTAGTGG+TGG | + | chr7.3:76354825-76354844 | MS.gene92456:CDS | 55.0% | |
| CCACTAAGATCTGGAGGTGG+AGG | - | chr7.3:76354825-76354844 | None:intergenic | 55.0% | |
| CCTCCACCTCCAGATCTTAG+TGG | + | chr7.3:76354822-76354841 | MS.gene92456:CDS | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | chr7.3:76354276-76354295 | MS.gene92456:CDS | 55.0% | |
| GTAGGTGTGTTGCCTCCTCA+AGG | + | chr7.3:76355131-76355150 | MS.gene92456:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | chr7.3:76354330-76354349 | None:intergenic | 55.0% | |
| ! | ATGCGGCATTGAGGCATGTG+CGG | + | chr7.3:76354266-76354285 | MS.gene92456:CDS | 55.0% |
| ! | GCATCCCCATGCTACTTCCA+TGG | - | chr7.3:76354803-76354822 | None:intergenic | 55.0% |
| !! | ATTGGTGCCAACGATGGAGG+AGG | - | chr7.3:76354651-76354670 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | chr7.3:76354282-76354301 | MS.gene92456:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 76354144 | 76355715 | 76354144 | ID=MS.gene92456 |
| chr7.3 | mRNA | 76354144 | 76355715 | 76354144 | ID=MS.gene92456.t1;Parent=MS.gene92456 |
| chr7.3 | exon | 76354144 | 76355715 | 76354144 | ID=MS.gene92456.t1.exon1;Parent=MS.gene92456.t1 |
| chr7.3 | CDS | 76354144 | 76355715 | 76354144 | ID=cds.MS.gene92456.t1;Parent=MS.gene92456.t1 |
| Gene Sequence |
| Protein sequence |
