Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92645.t1 | XP_003616690.1 | 75 | 144 | 36 | 0 | 3 | 146 | 1 | 144 | 1.80E-55 | 225.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92645.t1 | Q8LBW3 | 70.4 | 115 | 34 | 0 | 5 | 119 | 5 | 119 | 2.0e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92645.t1 | G7K288 | 75.0 | 144 | 36 | 0 | 3 | 146 | 1 | 144 | 1.3e-55 | 225.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92645.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92645.t1 | MTR_5g083230 | 75.000 | 144 | 36 | 0 | 3 | 146 | 1 | 144 | 4.96e-78 | 228 |
| MS.gene92645.t1 | MTR_3g071590 | 64.138 | 145 | 44 | 3 | 3 | 143 | 1 | 141 | 7.11e-60 | 182 |
| MS.gene92645.t1 | MTR_3g031660 | 55.629 | 151 | 56 | 2 | 4 | 143 | 3 | 153 | 8.66e-55 | 170 |
| MS.gene92645.t1 | MTR_2g068760 | 60.938 | 128 | 42 | 1 | 1 | 128 | 6 | 125 | 3.27e-51 | 160 |
| MS.gene92645.t1 | MTR_4g083680 | 64.035 | 114 | 41 | 0 | 1 | 114 | 8 | 121 | 5.74e-50 | 158 |
| MS.gene92645.t1 | MTR_2g093310 | 59.292 | 113 | 46 | 0 | 7 | 119 | 32 | 144 | 8.55e-47 | 150 |
| MS.gene92645.t1 | MTR_4g060950 | 58.772 | 114 | 46 | 1 | 7 | 119 | 23 | 136 | 4.06e-45 | 146 |
| MS.gene92645.t1 | MTR_1g095850 | 60.360 | 111 | 44 | 0 | 9 | 119 | 73 | 183 | 2.42e-43 | 142 |
| MS.gene92645.t1 | MTR_3g073690 | 61.538 | 104 | 40 | 0 | 5 | 108 | 6 | 109 | 1.02e-42 | 140 |
| MS.gene92645.t1 | MTR_5g083960 | 52.893 | 121 | 57 | 0 | 3 | 123 | 34 | 154 | 5.82e-42 | 138 |
| MS.gene92645.t1 | MTR_3g077240 | 63.810 | 105 | 38 | 0 | 4 | 108 | 6 | 110 | 6.91e-41 | 135 |
| MS.gene92645.t1 | MTR_7g033800 | 62.136 | 103 | 39 | 0 | 6 | 108 | 9 | 111 | 1.20e-40 | 134 |
| MS.gene92645.t1 | MTR_6g005070 | 52.459 | 122 | 58 | 0 | 6 | 127 | 7 | 128 | 1.69e-40 | 133 |
| MS.gene92645.t1 | MTR_6g005080 | 60.194 | 103 | 41 | 0 | 6 | 108 | 8 | 110 | 2.52e-40 | 132 |
| MS.gene92645.t1 | MTR_4g105170 | 62.136 | 103 | 39 | 0 | 6 | 108 | 9 | 111 | 3.05e-40 | 134 |
| MS.gene92645.t1 | MTR_5g017950 | 52.273 | 132 | 60 | 2 | 4 | 132 | 4 | 135 | 1.19e-38 | 133 |
| MS.gene92645.t1 | MTR_5g083010 | 52.846 | 123 | 56 | 1 | 5 | 127 | 8 | 128 | 1.71e-38 | 129 |
| MS.gene92645.t1 | MTR_3g071420 | 60.396 | 101 | 40 | 0 | 5 | 105 | 11 | 111 | 3.10e-38 | 128 |
| MS.gene92645.t1 | MTR_3g094690 | 56.481 | 108 | 47 | 0 | 7 | 114 | 46 | 153 | 1.54e-37 | 128 |
| MS.gene92645.t1 | MTR_3g452660 | 54.286 | 105 | 48 | 0 | 4 | 108 | 3 | 107 | 2.98e-37 | 129 |
| MS.gene92645.t1 | MTR_7g028905 | 49.550 | 111 | 56 | 0 | 7 | 117 | 4 | 114 | 9.70e-37 | 122 |
| MS.gene92645.t1 | MTR_5g093010 | 47.863 | 117 | 61 | 0 | 9 | 125 | 6 | 122 | 6.87e-36 | 121 |
| MS.gene92645.t1 | MTR_3g094690 | 56.481 | 108 | 46 | 1 | 7 | 114 | 46 | 152 | 1.71e-35 | 123 |
| MS.gene92645.t1 | MTR_8g040900 | 54.237 | 118 | 52 | 1 | 4 | 121 | 3 | 118 | 1.10e-34 | 120 |
| MS.gene92645.t1 | MTR_5g075020 | 58.824 | 102 | 42 | 0 | 7 | 108 | 42 | 143 | 3.99e-34 | 119 |
| MS.gene92645.t1 | MTR_5g075020 | 58.824 | 102 | 42 | 0 | 7 | 108 | 46 | 147 | 5.18e-34 | 119 |
| MS.gene92645.t1 | MTR_1g070220 | 51.429 | 105 | 50 | 1 | 4 | 107 | 11 | 115 | 3.11e-33 | 116 |
| MS.gene92645.t1 | MTR_5g080470 | 41.333 | 150 | 78 | 4 | 3 | 145 | 1 | 147 | 3.93e-33 | 115 |
| MS.gene92645.t1 | MTR_7g075230 | 44.366 | 142 | 72 | 3 | 5 | 143 | 9 | 146 | 8.87e-33 | 115 |
| MS.gene92645.t1 | MTR_7g096530 | 51.429 | 105 | 50 | 1 | 7 | 110 | 13 | 117 | 1.16e-32 | 115 |
| MS.gene92645.t1 | MTR_6g027710 | 39.437 | 142 | 75 | 3 | 7 | 145 | 39 | 172 | 4.93e-31 | 111 |
| MS.gene92645.t1 | MTR_7g096610 | 51.402 | 107 | 50 | 2 | 3 | 107 | 2 | 108 | 5.00e-31 | 111 |
| MS.gene92645.t1 | MTR_8g036105 | 47.934 | 121 | 60 | 2 | 5 | 124 | 15 | 133 | 1.20e-30 | 110 |
| MS.gene92645.t1 | MTR_8g036085 | 53.125 | 96 | 44 | 1 | 8 | 102 | 23 | 118 | 1.49e-30 | 110 |
| MS.gene92645.t1 | MTR_1g070205 | 40.714 | 140 | 80 | 2 | 8 | 146 | 12 | 149 | 4.19e-30 | 109 |
| MS.gene92645.t1 | MTR_7g074990 | 50.980 | 102 | 49 | 1 | 8 | 108 | 20 | 121 | 1.10e-29 | 108 |
| MS.gene92645.t1 | MTR_8g079660 | 44.643 | 112 | 60 | 1 | 8 | 119 | 8 | 117 | 6.76e-29 | 106 |
| MS.gene92645.t1 | MTR_8g079620 | 46.535 | 101 | 54 | 0 | 8 | 108 | 8 | 108 | 1.04e-28 | 105 |
| MS.gene92645.t1 | MTR_6g027700 | 37.405 | 131 | 69 | 2 | 8 | 125 | 7 | 137 | 7.87e-28 | 102 |
| MS.gene92645.t1 | MTR_6g011250 | 37.719 | 114 | 70 | 1 | 3 | 115 | 4 | 117 | 7.53e-25 | 94.4 |
| MS.gene92645.t1 | MTR_8g079580 | 43.363 | 113 | 61 | 2 | 8 | 119 | 8 | 118 | 1.34e-23 | 92.0 |
| MS.gene92645.t1 | MTR_6g011230 | 36.538 | 104 | 66 | 0 | 9 | 112 | 12 | 115 | 1.09e-21 | 86.7 |
| MS.gene92645.t1 | MTR_6g011200 | 35.135 | 111 | 71 | 1 | 6 | 115 | 7 | 117 | 1.21e-21 | 87.4 |
| MS.gene92645.t1 | MTR_4g107450 | 43.011 | 93 | 53 | 0 | 9 | 101 | 11 | 103 | 3.18e-21 | 87.4 |
| MS.gene92645.t1 | MTR_2g100020 | 37.000 | 100 | 63 | 0 | 9 | 108 | 20 | 119 | 1.29e-20 | 85.1 |
| MS.gene92645.t1 | MTR_8g017090 | 36.000 | 100 | 64 | 0 | 9 | 108 | 13 | 112 | 5.85e-20 | 84.0 |
| MS.gene92645.t1 | MTR_4g099230 | 31.579 | 114 | 77 | 1 | 9 | 121 | 3 | 116 | 3.48e-18 | 76.3 |
| MS.gene92645.t1 | MTR_4g088035 | 36.559 | 93 | 59 | 0 | 3 | 95 | 1 | 93 | 5.20e-18 | 78.2 |
| MS.gene92645.t1 | MTR_5g085390 | 34.906 | 106 | 68 | 1 | 6 | 110 | 7 | 112 | 5.64e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92645.t1 | AT2G30130 | 63.158 | 133 | 45 | 1 | 5 | 133 | 5 | 137 | 2.62e-57 | 177 |
| MS.gene92645.t1 | AT2G28500 | 50.714 | 140 | 68 | 1 | 7 | 146 | 54 | 192 | 4.81e-48 | 155 |
| MS.gene92645.t1 | AT1G07900 | 63.889 | 108 | 37 | 1 | 7 | 114 | 32 | 137 | 9.42e-48 | 152 |
| MS.gene92645.t1 | AT1G31320 | 58.678 | 121 | 50 | 0 | 1 | 121 | 6 | 126 | 7.48e-44 | 142 |
| MS.gene92645.t1 | AT1G16530 | 59.813 | 107 | 42 | 1 | 7 | 112 | 13 | 119 | 1.23e-42 | 139 |
| MS.gene92645.t1 | AT3G27650 | 61.165 | 103 | 40 | 0 | 6 | 108 | 37 | 139 | 1.21e-40 | 134 |
| MS.gene92645.t1 | AT5G63090 | 62.264 | 106 | 39 | 1 | 6 | 110 | 9 | 114 | 1.59e-40 | 134 |
| MS.gene92645.t1 | AT5G63090 | 62.264 | 106 | 39 | 1 | 6 | 110 | 9 | 114 | 1.59e-40 | 134 |
| MS.gene92645.t1 | AT5G63090 | 62.264 | 106 | 39 | 1 | 6 | 110 | 9 | 114 | 1.59e-40 | 134 |
| MS.gene92645.t1 | AT5G63090 | 62.264 | 106 | 39 | 1 | 6 | 110 | 9 | 114 | 1.59e-40 | 134 |
| MS.gene92645.t1 | AT3G26620 | 48.800 | 125 | 55 | 1 | 9 | 133 | 6 | 121 | 3.84e-39 | 129 |
| MS.gene92645.t1 | AT2G23660 | 52.542 | 118 | 53 | 2 | 6 | 122 | 3 | 118 | 6.88e-39 | 134 |
| MS.gene92645.t1 | AT2G23660 | 52.542 | 118 | 53 | 2 | 6 | 122 | 3 | 118 | 6.88e-39 | 134 |
| MS.gene92645.t1 | AT2G23660 | 52.542 | 118 | 53 | 2 | 6 | 122 | 3 | 118 | 6.88e-39 | 134 |
| MS.gene92645.t1 | AT3G26660 | 56.000 | 100 | 44 | 0 | 9 | 108 | 6 | 105 | 1.16e-38 | 127 |
| MS.gene92645.t1 | AT2G30340 | 52.101 | 119 | 57 | 0 | 7 | 125 | 51 | 169 | 4.02e-38 | 130 |
| MS.gene92645.t1 | AT2G30340 | 52.101 | 119 | 57 | 0 | 7 | 125 | 52 | 170 | 5.11e-38 | 130 |
| MS.gene92645.t1 | AT3G11090 | 54.310 | 116 | 52 | 1 | 6 | 120 | 9 | 124 | 1.72e-37 | 126 |
| MS.gene92645.t1 | AT5G66870 | 52.459 | 122 | 57 | 1 | 4 | 124 | 3 | 124 | 3.87e-37 | 129 |
| MS.gene92645.t1 | AT1G65620 | 60.000 | 105 | 42 | 0 | 4 | 108 | 5 | 109 | 7.02e-36 | 123 |
| MS.gene92645.t1 | AT1G65620 | 60.000 | 105 | 42 | 0 | 4 | 108 | 5 | 109 | 7.02e-36 | 123 |
| MS.gene92645.t1 | AT1G65620 | 60.000 | 105 | 42 | 0 | 4 | 108 | 5 | 109 | 7.02e-36 | 123 |
| MS.gene92645.t1 | AT1G65620 | 60.000 | 105 | 42 | 0 | 4 | 108 | 5 | 109 | 7.02e-36 | 123 |
| MS.gene92645.t1 | AT1G65620 | 60.000 | 105 | 42 | 0 | 4 | 108 | 5 | 109 | 7.02e-36 | 123 |
| MS.gene92645.t1 | AT2G40470 | 59.804 | 102 | 41 | 0 | 7 | 108 | 19 | 120 | 1.41e-34 | 119 |
| MS.gene92645.t1 | AT2G40470 | 59.804 | 102 | 41 | 0 | 7 | 108 | 44 | 145 | 1.75e-34 | 120 |
| MS.gene92645.t1 | AT4G00210 | 48.031 | 127 | 55 | 3 | 3 | 123 | 1 | 122 | 7.23e-34 | 118 |
| MS.gene92645.t1 | AT2G42430 | 53.846 | 104 | 47 | 1 | 6 | 108 | 13 | 116 | 2.41e-33 | 117 |
| MS.gene92645.t1 | AT3G03760 | 52.427 | 103 | 48 | 1 | 7 | 108 | 50 | 152 | 2.82e-33 | 118 |
| MS.gene92645.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 1.67e-31 | 111 |
| MS.gene92645.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 6 | 108 | 10 | 112 | 1.67e-31 | 111 |
| MS.gene92645.t1 | AT2G42440 | 43.750 | 128 | 69 | 3 | 3 | 127 | 1 | 128 | 4.63e-31 | 112 |
| MS.gene92645.t1 | AT2G45410 | 44.444 | 126 | 66 | 2 | 11 | 132 | 19 | 144 | 5.87e-31 | 110 |
| MS.gene92645.t1 | AT2G31310 | 40.714 | 140 | 73 | 3 | 3 | 132 | 1 | 140 | 1.08e-29 | 107 |
| MS.gene92645.t1 | AT3G58190 | 49.495 | 99 | 49 | 1 | 8 | 105 | 11 | 109 | 1.27e-29 | 107 |
| MS.gene92645.t1 | AT5G06080 | 41.600 | 125 | 69 | 2 | 4 | 124 | 3 | 127 | 9.37e-28 | 101 |
| MS.gene92645.t1 | AT2G45420 | 46.154 | 104 | 55 | 1 | 11 | 113 | 40 | 143 | 3.34e-27 | 102 |
| MS.gene92645.t1 | AT4G00220 | 48.077 | 104 | 53 | 1 | 11 | 113 | 20 | 123 | 3.80e-27 | 101 |
| MS.gene92645.t1 | AT5G35900 | 41.748 | 103 | 60 | 0 | 9 | 111 | 6 | 108 | 1.06e-24 | 94.7 |
| MS.gene92645.t1 | AT3G13850 | 38.211 | 123 | 62 | 3 | 9 | 117 | 37 | 159 | 6.57e-24 | 94.0 |
| MS.gene92645.t1 | AT1G72980 | 40.196 | 102 | 61 | 0 | 7 | 108 | 12 | 113 | 3.76e-22 | 88.2 |
| MS.gene92645.t1 | AT3G47870 | 40.000 | 90 | 54 | 0 | 2 | 91 | 30 | 119 | 6.44e-19 | 81.6 |
| MS.gene92645.t1 | AT1G06280 | 44.156 | 77 | 43 | 0 | 9 | 85 | 25 | 101 | 8.17e-18 | 76.6 |
| MS.gene92645.t1 | AT2G19820 | 37.500 | 96 | 59 | 1 | 7 | 101 | 11 | 106 | 4.90e-17 | 72.4 |
| MS.gene92645.t1 | AT4G22700 | 41.758 | 91 | 51 | 2 | 9 | 98 | 6 | 95 | 7.11e-16 | 71.2 |
| MS.gene92645.t1 | AT5G15060 | 41.892 | 74 | 39 | 2 | 9 | 79 | 18 | 90 | 8.91e-13 | 62.0 |
| MS.gene92645.t1 | AT1G36000 | 28.261 | 92 | 66 | 0 | 3 | 94 | 4 | 95 | 3.28e-12 | 60.1 |
Find 21 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAACTACGACAAACTTT+TGG | 0.258263 | 3.3:+33822977 | None:intergenic |
| AGATTGAGTGACCCAGTTTA+TGG | 0.284882 | 3.3:-33820165 | MS.gene92645:CDS |
| AACAAGAAATATCATAATTA+AGG | 0.293198 | 3.3:+33819968 | None:intergenic |
| GGAGCAAAGATGCAATCTTT+TGG | 0.343297 | 3.3:+33823021 | None:intergenic |
| GCTCCAGCACAACCATAAAC+TGG | 0.357617 | 3.3:+33820153 | None:intergenic |
| CATATATCACTTGCAAAATC+AGG | 0.363361 | 3.3:-33820130 | MS.gene92645:CDS |
| GCACCTTCCCTTTGCTGAAT+CGG | 0.373246 | 3.3:+33820219 | None:intergenic |
| AGGTATTGAGCGAGTTCATC+TGG | 0.379557 | 3.3:+33819988 | None:intergenic |
| CAACGTTGGCAGAATATTGC+AGG | 0.427266 | 3.3:-33822938 | MS.gene92645:intron |
| GGTTCAAGAGAAGGAAAATA+AGG | 0.429065 | 3.3:+33823000 | None:intergenic |
| TCTTGGTTGAATTGTGGTGC+TGG | 0.452174 | 3.3:+33820030 | None:intergenic |
| GACCCAGTTTATGGTTGTGC+TGG | 0.452179 | 3.3:-33820156 | MS.gene92645:CDS |
| TAAAGTAAGATGTGTGATCT+TGG | 0.468213 | 3.3:+33820013 | None:intergenic |
| GGATCTTCCGATTCAGCAAA+GGG | 0.503129 | 3.3:-33820226 | MS.gene92645:CDS |
| TTGCTCGAGCAACTGCAAGT+TGG | 0.520454 | 3.3:+33820091 | None:intergenic |
| CTCCAGCACAACCATAAACT+GGG | 0.573541 | 3.3:+33820154 | None:intergenic |
| GTGTGATCTTGGTTGAATTG+TGG | 0.577677 | 3.3:+33820024 | None:intergenic |
| AGGATCTTCCGATTCAGCAA+AGG | 0.581668 | 3.3:-33820227 | MS.gene92645:CDS |
| AAAGTTTGTCGTAGTTCACA+AGG | 0.596548 | 3.3:-33822974 | MS.gene92645:CDS |
| AGAATCTTGCATGAAGCACA+TGG | 0.616501 | 3.3:+33823057 | None:intergenic |
| CTTCCGATTCAGCAAAGGGA+AGG | 0.633097 | 3.3:-33820222 | MS.gene92645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATAAACAACTAAAAA+GGG | + | chr3.3:33820687-33820706 | None:intergenic | 10.0% |
| !! | TAAAAAAATACTACTAAAAA+AGG | + | chr3.3:33820653-33820672 | None:intergenic | 10.0% |
| !! | TAAATAATTAACCATTAAAA+AGG | + | chr3.3:33822539-33822558 | None:intergenic | 10.0% |
| !! | TATTATATAAACAACTAAAA+AGG | + | chr3.3:33820688-33820707 | None:intergenic | 10.0% |
| !! | TTAATAAAATTGAGAAATAT+AGG | + | chr3.3:33821470-33821489 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAAAAAGTGTT+TGG | + | chr3.3:33822263-33822282 | None:intergenic | 10.0% |
| !!! | ATAAGTGTTTATTATTTTTT+AGG | - | chr3.3:33822581-33822600 | MS.gene92645:intron | 10.0% |
| !!! | GAGTATTATTTTATAATTAT+CGG | - | chr3.3:33820856-33820875 | MS.gene92645:intron | 10.0% |
| !!! | TAAGTGTTTATTATTTTTTA+GGG | - | chr3.3:33822582-33822601 | MS.gene92645:intron | 10.0% |
| !!! | TTTTAATTTTACTGATTTTA+TGG | + | chr3.3:33821368-33821387 | None:intergenic | 10.0% |
| !! | AACAAGAAATATCATAATTA+AGG | + | chr3.3:33823079-33823098 | None:intergenic | 15.0% |
| !! | GTATTAAATACAAATTCATA+AGG | + | chr3.3:33820566-33820585 | None:intergenic | 15.0% |
| !! | TAAAAAAGAAAGCTAAAAAA+AGG | + | chr3.3:33820622-33820641 | None:intergenic | 15.0% |
| !! | TTAATCATCTAAAAAGTAAA+TGG | + | chr3.3:33820155-33820174 | None:intergenic | 15.0% |
| !!! | AAGTGTTTATTATTTTTTAG+GGG | - | chr3.3:33822583-33822602 | MS.gene92645:intron | 15.0% |
| !!! | ATGATTTAAAACCTTTTTAA+TGG | - | chr3.3:33822525-33822544 | MS.gene92645:intron | 15.0% |
| !!! | ATTTTTTGTAGACATATTTT+AGG | - | chr3.3:33820336-33820355 | MS.gene92645:intron | 15.0% |
| !!! | GTTTGATGATTTTTTTAAAT+TGG | + | chr3.3:33822156-33822175 | None:intergenic | 15.0% |
| !!! | TCTTTTATGTTTTTTATATC+CGG | + | chr3.3:33820539-33820558 | None:intergenic | 15.0% |
| !!! | TTTTTGAAAGAGTATTTTTT+TGG | + | chr3.3:33821424-33821443 | None:intergenic | 15.0% |
| !! | ACAATATAAACAACTAATCT+TGG | + | chr3.3:33820208-33820227 | None:intergenic | 20.0% |
| !! | AGCAATTTCCTAAATATTTA+CGG | - | chr3.3:33822224-33822243 | MS.gene92645:intron | 20.0% |
| !! | ATTAAAATCTAAATTGCACA+GGG | + | chr3.3:33821085-33821104 | None:intergenic | 20.0% |
| !! | CAATATAAACAACTAATCTT+GGG | + | chr3.3:33820207-33820226 | None:intergenic | 20.0% |
| !! | GAATAGAAAAAACTTAGAAA+AGG | + | chr3.3:33820595-33820614 | None:intergenic | 20.0% |
| !! | TAGTCTAAATTGATTGAATA+TGG | - | chr3.3:33821902-33821921 | MS.gene92645:intron | 20.0% |
| !! | TATTAAAATCTAAATTGCAC+AGG | + | chr3.3:33821086-33821105 | None:intergenic | 20.0% |
| !! | TCGGATTATAAAATACAAAT+TGG | - | chr3.3:33821749-33821768 | MS.gene92645:intron | 20.0% |
| !! | TTAAAATCTAACAATCTCAA+GGG | - | chr3.3:33821822-33821841 | MS.gene92645:intron | 20.0% |
| !!! | AAACTGATTTAAAAAGTGAT+TGG | + | chr3.3:33822131-33822150 | None:intergenic | 20.0% |
| !!! | AGTCATCAATTTATATGTTT+TGG | + | chr3.3:33821009-33821028 | None:intergenic | 20.0% |
| !!! | ATCGGATTTTAAAATATAGT+TGG | - | chr3.3:33820874-33820893 | MS.gene92645:intron | 20.0% |
| !!! | ATTTTCAGAAAAGTAACTAT+TGG | - | chr3.3:33820415-33820434 | MS.gene92645:intron | 20.0% |
| !!! | TAAGCAAATTTTGACTTTTT+AGG | - | chr3.3:33820731-33820750 | MS.gene92645:intron | 20.0% |
| !!! | TAGTTTGTGAATAAAATGTT+TGG | - | chr3.3:33820273-33820292 | MS.gene92645:intron | 20.0% |
| !!! | TATTTAGGAAATTGCTTTTT+AGG | + | chr3.3:33822220-33822239 | None:intergenic | 20.0% |
| !!! | TTAGATTTTAATATCCGAAT+TGG | - | chr3.3:33821093-33821112 | MS.gene92645:intron | 20.0% |
| !!! | TTTAAAATCTAACAATCTCA+AGG | - | chr3.3:33821821-33821840 | MS.gene92645:intron | 20.0% |
| !!! | TTTTGAACATATTTGTAACA+TGG | + | chr3.3:33821605-33821624 | None:intergenic | 20.0% |
| !!! | TTTTTAATTCATCCACAAAA+TGG | - | chr3.3:33822071-33822090 | MS.gene92645:intron | 20.0% |
| !!! | TTTTTTGTTTTGCAATGAAA+AGG | - | chr3.3:33822483-33822502 | MS.gene92645:intron | 20.0% |
| ! | AATAACTATTCATGAGAGTT+AGG | + | chr3.3:33821265-33821284 | None:intergenic | 25.0% |
| ! | ATACTAAGCAAATCATGATT+GGG | + | chr3.3:33820985-33821004 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr3.3:33820795-33820814 | None:intergenic | 25.0% |
| ! | CTAAATTGATTGAATATGGT+TGG | - | chr3.3:33821906-33821925 | MS.gene92645:intron | 25.0% |
| ! | GACTCAACTCATAAAAATTT+GGG | - | chr3.3:33821980-33821999 | MS.gene92645:intron | 25.0% |
| ! | GCAATTTCCTAAATATTTAC+GGG | - | chr3.3:33822225-33822244 | MS.gene92645:intron | 25.0% |
| ! | GGTAATGTATTAAAGGTTTA+GGG | + | chr3.3:33822402-33822421 | None:intergenic | 25.0% |
| ! | GTAATGTATTAAAGGTTTAG+GGG | + | chr3.3:33822401-33822420 | None:intergenic | 25.0% |
| ! | TACAAGTAGAATTGTCATAT+AGG | - | chr3.3:33820950-33820969 | MS.gene92645:intron | 25.0% |
| ! | TATACTAAGCAAATCATGAT+TGG | + | chr3.3:33820986-33821005 | None:intergenic | 25.0% |
| ! | TATATAATAATTACTCCCTC+TGG | - | chr3.3:33820699-33820718 | MS.gene92645:intron | 25.0% |
| ! | TATATAATCTGAACTCAGTT+AGG | - | chr3.3:33821203-33821222 | MS.gene92645:intron | 25.0% |
| ! | TCATTAACCCGTAAATATTT+AGG | + | chr3.3:33822235-33822254 | None:intergenic | 25.0% |
| ! | TGGATGAATTAAAAAGTGAT+TGG | + | chr3.3:33822066-33822085 | None:intergenic | 25.0% |
| ! | TTAAAATCTAAATTGCACAG+GGG | + | chr3.3:33821084-33821103 | None:intergenic | 25.0% |
| ! | TTATAAAATAATACTCCCTC+CGG | + | chr3.3:33820852-33820871 | None:intergenic | 25.0% |
| !! | AAAAAGTACAACAATGTTGT+TGG | - | chr3.3:33822683-33822702 | MS.gene92645:intron | 25.0% |
| !! | AAATGAGTTTTTCACCAATT+CGG | + | chr3.3:33821110-33821129 | None:intergenic | 25.0% |
| !! | ATTTTCGGAAGGAAAAAAAT+AGG | - | chr3.3:33821846-33821865 | MS.gene92645:intron | 25.0% |
| !! | ATTTTGCTTATAAATGAGAC+CGG | - | chr3.3:33820830-33820849 | MS.gene92645:intron | 25.0% |
| !! | TTTTCGGAAGGAAAAAAATA+GGG | - | chr3.3:33821847-33821866 | MS.gene92645:intron | 25.0% |
| !! | TTTTCTTTTGGTCTCAAAAA+AGG | + | chr3.3:33820299-33820318 | None:intergenic | 25.0% |
| !!! | CTCTCATGAATAGTTATTTT+AGG | - | chr3.3:33821267-33821286 | MS.gene92645:intron | 25.0% |
| !!! | TAACATGGATAGTCATTTTA+AGG | + | chr3.3:33821590-33821609 | None:intergenic | 25.0% |
| !!! | TGTTGTACTTTTTTACTATG+CGG | + | chr3.3:33822676-33822695 | None:intergenic | 25.0% |
| !!! | TTGATTTTTGAGCAATTAGA+GGG | + | chr3.3:33822022-33822041 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGAGCAATTAG+AGG | + | chr3.3:33822023-33822042 | None:intergenic | 25.0% |
| !!! | TTTTACTGATTTTATGGTCA+AGG | + | chr3.3:33821362-33821381 | None:intergenic | 25.0% |
| AAATTTGGGTGTAGTTCATT+AGG | - | chr3.3:33821994-33822013 | MS.gene92645:intron | 30.0% | |
| AAGAACACAATGATTGATCA+AGG | + | chr3.3:33822734-33822753 | None:intergenic | 30.0% | |
| ATCCGAAAACCTCAAAAAAT+AGG | + | chr3.3:33821735-33821754 | None:intergenic | 30.0% | |
| ATTATTCTTCCTAACTCTCA+TGG | + | chr3.3:33821562-33821581 | None:intergenic | 30.0% | |
| ATTGGTTGTTACCACTTAAT+GGG | - | chr3.3:33820433-33820452 | MS.gene92645:intron | 30.0% | |
| CATATATCACTTGCAAAATC+AGG | - | chr3.3:33822914-33822933 | MS.gene92645:intron | 30.0% | |
| CGACTCAACTCATAAAAATT+TGG | - | chr3.3:33821979-33821998 | MS.gene92645:intron | 30.0% | |
| GGGTAATGTATTAAAGGTTT+AGG | + | chr3.3:33822403-33822422 | None:intergenic | 30.0% | |
| TAAAGTAAGATGTGTGATCT+TGG | + | chr3.3:33823034-33823053 | None:intergenic | 30.0% | |
| TACAAAGGAAAAACTCAGTT+CGG | - | chr3.3:33821796-33821815 | MS.gene92645:intron | 30.0% | |
| TATATAATCCGAACTCAGTT+AGG | - | chr3.3:33821174-33821193 | MS.gene92645:intron | 30.0% | |
| TCATAAACACCCTATTTCAA+GGG | - | chr3.3:33821135-33821154 | MS.gene92645:intron | 30.0% | |
| TCCGAAAACCTCAAAAAATA+GGG | + | chr3.3:33821734-33821753 | None:intergenic | 30.0% | |
| TTCATAAACACCCTATTTCA+AGG | - | chr3.3:33821134-33821153 | MS.gene92645:intron | 30.0% | |
| ! | ACTGTTTTATCCCTTGAAAT+AGG | + | chr3.3:33821148-33821167 | None:intergenic | 30.0% |
| ! | ATATTTACGGGTTAATGAGT+CGG | - | chr3.3:33822237-33822256 | MS.gene92645:intron | 30.0% |
| ! | CTGATTTTGCAAGTGATATA+TGG | + | chr3.3:33822916-33822935 | None:intergenic | 30.0% |
| ! | CTGTTTTATCCCTTGAAATA+GGG | + | chr3.3:33821147-33821166 | None:intergenic | 30.0% |
| ! | GACACTTAATAACCATTTTG+TGG | + | chr3.3:33822086-33822105 | None:intergenic | 30.0% |
| ! | GATGGATCATTAACATTTTC+TGG | - | chr3.3:33821225-33821244 | MS.gene92645:intron | 30.0% |
| ! | GCAATTAGCTATGAAGTTTT+AGG | + | chr3.3:33820369-33820388 | None:intergenic | 30.0% |
| ! | TATTGGTTGTTACCACTTAA+TGG | - | chr3.3:33820432-33820451 | MS.gene92645:intron | 30.0% |
| ! | TGAGTTTTTCCTTTGTAATG+AGG | + | chr3.3:33821793-33821812 | None:intergenic | 30.0% |
| ! | TTTTACTATGCGGAAAAGTA+AGG | + | chr3.3:33822666-33822685 | None:intergenic | 30.0% |
| ! | TTTTTCTCATACAATGCATC+AGG | - | chr3.3:33822797-33822816 | MS.gene92645:intron | 30.0% |
| !! | TAGGGGTCAAATTTTGATAA+GGG | + | chr3.3:33822384-33822403 | None:intergenic | 30.0% |
| !! | TCGTTCGACAATTTTTAGAT+TGG | - | chr3.3:33822104-33822123 | MS.gene92645:intron | 30.0% |
| !! | TTAGGGGTCAAATTTTGATA+AGG | + | chr3.3:33822385-33822404 | None:intergenic | 30.0% |
| !!! | TGTTTTTTATATCCGGAAGT+TGG | + | chr3.3:33820532-33820551 | None:intergenic | 30.0% |
| AAAGTTTGTCGTAGTTCACA+AGG | - | chr3.3:33820070-33820089 | MS.gene92645:CDS | 35.0% | |
| AATCAAACCTGCATGATGTA+GGG | + | chr3.3:33822457-33822476 | None:intergenic | 35.0% | |
| AATGACTATCCATGAGAGTT+AGG | - | chr3.3:33821550-33821569 | MS.gene92645:intron | 35.0% | |
| CATTGTAACTTTAACAGTCG+TGG | + | chr3.3:33820916-33820935 | None:intergenic | 35.0% | |
| CCATAAAAATTGTGATCCGA+TGG | - | chr3.3:33820475-33820494 | MS.gene92645:intron | 35.0% | |
| CTCAAAAATCAAACTACCGT+TGG | - | chr3.3:33822030-33822049 | MS.gene92645:intron | 35.0% | |
| GCTAAGGGGTAATGTATTAA+AGG | + | chr3.3:33822409-33822428 | None:intergenic | 35.0% | |
| GGTTCAAGAGAAGGAAAATA+AGG | + | chr3.3:33820047-33820066 | None:intergenic | 35.0% | |
| GTTCTCAAATTGTTCACCAT+CGG | + | chr3.3:33820494-33820513 | None:intergenic | 35.0% | |
| TAAGCAAATCATGATTGGGT+TGG | + | chr3.3:33820981-33821000 | None:intergenic | 35.0% | |
| TAATCCATCCTAACTGAGTT+CGG | + | chr3.3:33821185-33821204 | None:intergenic | 35.0% | |
| TAATCTGAACTCAGTTAGGA+TGG | - | chr3.3:33821207-33821226 | MS.gene92645:intron | 35.0% | |
| TCTAGATATAGTCACGATTG+AGG | - | chr3.3:33822288-33822307 | MS.gene92645:intron | 35.0% | |
| TGCTTATAATAGTGACCAGA+GGG | + | chr3.3:33820717-33820736 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACCAG+AGG | + | chr3.3:33820718-33820737 | None:intergenic | 35.0% | |
| TTGGTTGTTACCACTTAATG+GGG | - | chr3.3:33820434-33820453 | MS.gene92645:intron | 35.0% | |
| ! | CATTTTCCACCTCATTACAA+AGG | - | chr3.3:33821781-33821800 | MS.gene92645:intron | 35.0% |
| ! | CCATCGGATCACAATTTTTA+TGG | + | chr3.3:33820478-33820497 | None:intergenic | 35.0% |
| ! | CCCTAAACACTCTTTTTCTA+GGG | + | chr3.3:33821672-33821691 | None:intergenic | 35.0% |
| ! | CCTAAACACTCTTTTTCTAG+GGG | + | chr3.3:33821671-33821690 | None:intergenic | 35.0% |
| ! | GAGCAAAGATGCAATCTTTT+GGG | + | chr3.3:33820025-33820044 | None:intergenic | 35.0% |
| ! | GTGAACTACGACAAACTTTT+GGG | + | chr3.3:33820069-33820088 | None:intergenic | 35.0% |
| ! | GTTTTTCCTTTGTAATGAGG+TGG | + | chr3.3:33821790-33821809 | None:intergenic | 35.0% |
| ! | TAACCAAAAATCCGGTTTTC+AGG | - | chr3.3:33821307-33821326 | MS.gene92645:intron | 35.0% |
| ! | TGAACTACGACAAACTTTTG+GGG | + | chr3.3:33820068-33820087 | None:intergenic | 35.0% |
| ! | TGTGAACTACGACAAACTTT+TGG | + | chr3.3:33820070-33820089 | None:intergenic | 35.0% |
| ! | TTTCTAGGGGAAAAACAGTT+AGG | + | chr3.3:33821658-33821677 | None:intergenic | 35.0% |
| !! | CCCTAGAAAAAGAGTGTTTA+GGG | - | chr3.3:33821669-33821688 | MS.gene92645:intron | 35.0% |
| !! | CCTAGAAAAAGAGTGTTTAG+GGG | - | chr3.3:33821670-33821689 | MS.gene92645:intron | 35.0% |
| !! | CTCTCATGGATAGTCATTTT+AGG | + | chr3.3:33821548-33821567 | None:intergenic | 35.0% |
| !! | GCATTTTTGGAAAAAGCACA+AGG | + | chr3.3:33821062-33821081 | None:intergenic | 35.0% |
| !!! | AACAATCTCAAGGGCATTTT+CGG | - | chr3.3:33821831-33821850 | MS.gene92645:intron | 35.0% |
| !!! | AATTGCTTTTTAGGCAACCA+CGG | + | chr3.3:33822211-33822230 | None:intergenic | 35.0% |
| !!! | ACCGGATTTTTGGTTAAGAA+CGG | + | chr3.3:33821303-33821322 | None:intergenic | 35.0% |
| !!! | CATTCCTCGCTTTTTTCTTT+TGG | + | chr3.3:33820311-33820330 | None:intergenic | 35.0% |
| !!! | GCCCTATTTTTTGAGGTTTT+CGG | - | chr3.3:33821730-33821749 | MS.gene92645:intron | 35.0% |
| AAACAGTAGTTAACTGTCGC+TGG | - | chr3.3:33822172-33822191 | MS.gene92645:intron | 40.0% | |
| AGAATCTTGCATGAAGCACA+TGG | + | chr3.3:33819990-33820009 | None:intergenic | 40.0% | |
| AGATTGAGTGACCCAGTTTA+TGG | - | chr3.3:33822879-33822898 | MS.gene92645:intron | 40.0% | |
| ATCAAACCTGCATGATGTAG+GGG | + | chr3.3:33822456-33822475 | None:intergenic | 40.0% | |
| GAATCAAACCTGCATGATGT+AGG | + | chr3.3:33822458-33822477 | None:intergenic | 40.0% | |
| GAGACCAAAAGAAAAAAGCG+AGG | - | chr3.3:33820304-33820323 | MS.gene92645:intron | 40.0% | |
| GATCAGATTGCTCCAAAACT+TGG | - | chr3.3:33821336-33821355 | MS.gene92645:intron | 40.0% | |
| GATTGGACCAATCAAACCAA+CGG | + | chr3.3:33822049-33822068 | None:intergenic | 40.0% | |
| GCCGTTCTTAACCAAAAATC+CGG | - | chr3.3:33821299-33821318 | MS.gene92645:intron | 40.0% | |
| GGTTGGATCGATTGTTGTAA+TGG | - | chr3.3:33821923-33821942 | MS.gene92645:intron | 40.0% | |
| GTGTGATCTTGGTTGAATTG+TGG | + | chr3.3:33823023-33823042 | None:intergenic | 40.0% | |
| TAATCCGAACTCAGTTAGGA+TGG | - | chr3.3:33821178-33821197 | MS.gene92645:intron | 40.0% | |
| TGATCAAGTAGCCTGAAAAC+CGG | + | chr3.3:33821321-33821340 | None:intergenic | 40.0% | |
| TGCTTATAAATGAGACCGGA+GGG | - | chr3.3:33820834-33820853 | MS.gene92645:intron | 40.0% | |
| TTGAGTCGTGAAGTTCAACA+AGG | + | chr3.3:33821967-33821986 | None:intergenic | 40.0% | |
| TTGCTTATAAATGAGACCGG+AGG | - | chr3.3:33820833-33820852 | MS.gene92645:intron | 40.0% | |
| ! | AGCTCAACTGGTTTAAGCTA+AGG | + | chr3.3:33822425-33822444 | None:intergenic | 40.0% |
| ! | CCCCTAAACACTCTTTTTCT+AGG | + | chr3.3:33821673-33821692 | None:intergenic | 40.0% |
| ! | CTCAACTGGTTTAAGCTAAG+GGG | + | chr3.3:33822423-33822442 | None:intergenic | 40.0% |
| ! | GCTCAACTGGTTTAAGCTAA+GGG | + | chr3.3:33822424-33822443 | None:intergenic | 40.0% |
| ! | GGAACACTAAAAAGAGTACG+AGG | + | chr3.3:33820134-33820153 | None:intergenic | 40.0% |
| ! | GGAGCAAAGATGCAATCTTT+TGG | + | chr3.3:33820026-33820045 | None:intergenic | 40.0% |
| ! | GGCGCGTTACTTGAATTTTT+CGG | + | chr3.3:33821713-33821732 | None:intergenic | 40.0% |
| ! | GTCGTAGTTCACAAGGTTTT+TGG | - | chr3.3:33820077-33820096 | MS.gene92645:CDS | 40.0% |
| ! | TAGCCTGAAAACCGGATTTT+TGG | + | chr3.3:33821313-33821332 | None:intergenic | 40.0% |
| ! | TTATGGTCAAGGCCAAGTTT+TGG | + | chr3.3:33821351-33821370 | None:intergenic | 40.0% |
| !! | CAAACTACCGTTGGTTTGAT+TGG | - | chr3.3:33822039-33822058 | MS.gene92645:intron | 40.0% |
| !! | CCCCTAGAAAAAGAGTGTTT+AGG | - | chr3.3:33821668-33821687 | MS.gene92645:intron | 40.0% |
| !!! | AAATTGCACAGGGGCATTTT+TGG | + | chr3.3:33821075-33821094 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCAAGAGA+AGG | + | chr3.3:33820056-33820075 | None:intergenic | 40.0% |
| !!! | ATTGCTTTTTAGGCAACCAC+GGG | + | chr3.3:33822210-33822229 | None:intergenic | 40.0% |
| AGGATCTTCCGATTCAGCAA+AGG | - | chr3.3:33822817-33822836 | MS.gene92645:intron | 45.0% | |
| ATTGAGCAATCGCCAACTTC+CGG | - | chr3.3:33820517-33820536 | MS.gene92645:intron | 45.0% | |
| CAACGTTGGCAGAATATTGC+AGG | - | chr3.3:33820106-33820125 | MS.gene92645:CDS | 45.0% | |
| CGCTCGAGAAATGAATATGG+TGG | - | chr3.3:33821870-33821889 | MS.gene92645:intron | 45.0% | |
| CTCCAGCACAACCATAAACT+GGG | + | chr3.3:33822893-33822912 | None:intergenic | 45.0% | |
| GGATCTTCCGATTCAGCAAA+GGG | - | chr3.3:33822818-33822837 | MS.gene92645:intron | 45.0% | |
| GTGAGTAGAACCCCATTAAG+TGG | + | chr3.3:33820447-33820466 | None:intergenic | 45.0% | |
| TCAAACCTGCATGATGTAGG+GGG | + | chr3.3:33822455-33822474 | None:intergenic | 45.0% | |
| TCTTGGTTGAATTGTGGTGC+TGG | + | chr3.3:33823017-33823036 | None:intergenic | 45.0% | |
| !! | AGGTATTGAGCGAGTTCATC+TGG | + | chr3.3:33823059-33823078 | None:intergenic | 45.0% |
| !!! | ATCTCAAGGGCATTTTCGGA+AGG | - | chr3.3:33821835-33821854 | MS.gene92645:intron | 45.0% |
| !!! | GTAACGCGCCCTATTTTTTG+AGG | - | chr3.3:33821723-33821742 | MS.gene92645:intron | 45.0% |
| CAAACCTGCATGATGTAGGG+GGG | + | chr3.3:33822454-33822473 | None:intergenic | 50.0% | |
| CTTCCGATTCAGCAAAGGGA+AGG | - | chr3.3:33822822-33822841 | MS.gene92645:intron | 50.0% | |
| GACCCAGTTTATGGTTGTGC+TGG | - | chr3.3:33822888-33822907 | MS.gene92645:intron | 50.0% | |
| GCACCTTCCCTTTGCTGAAT+CGG | + | chr3.3:33822828-33822847 | None:intergenic | 50.0% | |
| GCTCCAGCACAACCATAAAC+TGG | + | chr3.3:33822894-33822913 | None:intergenic | 50.0% | |
| GGGCGCTCGAGAAATGAATA+TGG | - | chr3.3:33821867-33821886 | MS.gene92645:intron | 50.0% | |
| TTGCTCGAGCAACTGCAAGT+TGG | + | chr3.3:33822956-33822975 | None:intergenic | 50.0% | |
| !!! | GTTTTTGGCGCTAGCAACGT+TGG | - | chr3.3:33820092-33820111 | MS.gene92645:CDS | 50.0% |
| AGGCGCGCGAGAATGACATA+TGG | + | chr3.3:33821042-33821061 | None:intergenic | 55.0% | |
| CAAACCCCCCTACATCATGC+AGG | - | chr3.3:33822447-33822466 | MS.gene92645:intron | 55.0% | |
| CTGGATGTAAGAGCAACCCG+TGG | - | chr3.3:33822191-33822210 | MS.gene92645:intron | 55.0% | |
| GGCGCGCGAGAATGACATAT+GGG | + | chr3.3:33821041-33821060 | None:intergenic | 55.0% | |
| ! | GGGGGGTTTGATAGCTCAAC+TGG | + | chr3.3:33822437-33822456 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 33819966 | 33823100 | 33819966 | ID=MS.gene92645 |
| chr3.3 | mRNA | 33819966 | 33823100 | 33819966 | ID=MS.gene92645.t1;Parent=MS.gene92645 |
| chr3.3 | exon | 33822939 | 33823100 | 33822939 | ID=MS.gene92645.t1.exon1;Parent=MS.gene92645.t1 |
| chr3.3 | CDS | 33822939 | 33823100 | 33822939 | ID=cds.MS.gene92645.t1;Parent=MS.gene92645.t1 |
| chr3.3 | exon | 33819966 | 33820247 | 33819966 | ID=MS.gene92645.t1.exon2;Parent=MS.gene92645.t1 |
| chr3.3 | CDS | 33819966 | 33820247 | 33819966 | ID=cds.MS.gene92645.t1;Parent=MS.gene92645.t1 |
| Gene Sequence |
| Protein sequence |
