AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92903

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92903.t1 MTR_5g044670 90.446 314 30 0 1 314 1 314 0.0 593
MS.gene92903.t1 MTR_3g098790 32.895 304 179 8 16 307 13 303 2.87e-44 154
MS.gene92903.t1 MTR_7g050710 31.715 309 182 9 16 306 13 310 1.27e-42 149
MS.gene92903.t1 MTR_7g050580 33.007 306 178 8 16 311 13 301 1.11e-41 147
MS.gene92903.t1 MTR_8g103940 28.012 332 187 8 3 307 29 335 6.46e-41 149
MS.gene92903.t1 MTR_7g050560 30.945 307 183 9 16 311 13 301 5.22e-40 142
MS.gene92903.t1 MTR_7g050720 31.746 315 183 10 16 305 10 317 7.38e-40 142
MS.gene92903.t1 MTR_3g061350 30.717 293 175 8 16 301 12 283 1.08e-38 138
MS.gene92903.t1 MTR_1g108780 29.642 307 166 8 32 310 13 297 1.41e-38 142
MS.gene92903.t1 MTR_7g050590 30.233 301 180 7 31 311 1 291 5.46e-38 137
MS.gene92903.t1 MTR_1g035640 32.353 306 169 9 25 317 14 294 1.52e-37 139
MS.gene92903.t1 MTR_3g061370 30.034 293 177 7 16 301 9 280 5.85e-37 134
MS.gene92903.t1 MTR_3g061310 29.831 295 176 7 16 301 12 284 7.36e-35 128
MS.gene92903.t1 MTR_6g061070 29.738 343 196 10 5 314 3 333 1.25e-34 131
MS.gene92903.t1 MTR_3g061340 28.179 291 177 11 16 302 12 274 1.49e-33 124
MS.gene92903.t1 MTR_3g061330 29.572 257 161 8 16 269 12 251 1.75e-32 121
MS.gene92903.t1 MTR_1g035570 28.283 297 180 5 25 307 14 291 4.19e-32 123
MS.gene92903.t1 MTR_3g061320 28.322 286 186 5 16 301 12 278 4.27e-32 120
MS.gene92903.t1 MTR_4g119990 28.274 336 206 11 1 314 1 323 5.36e-32 122
MS.gene92903.t1 MTR_6g043890 28.803 309 182 9 1 289 1 291 3.13e-30 117
MS.gene92903.t1 MTR_1g035460 28.105 306 174 8 31 306 1 290 3.38e-30 118
MS.gene92903.t1 MTR_1g035620 29.605 304 179 8 10 304 3 280 8.95e-30 117
MS.gene92903.t1 MTR_3g005460 29.333 300 162 8 16 306 262 520 2.51e-28 114
MS.gene92903.t1 MTR_3g005460 32.639 144 94 3 2 144 12 153 1.05e-17 84.0
MS.gene92903.t1 MTR_3g005490 26.689 296 164 8 13 306 18 262 1.13e-27 108
MS.gene92903.t1 MTR_3g005480 25.168 298 167 7 13 306 18 263 3.38e-27 107
MS.gene92903.t1 MTR_1g050845 27.575 301 177 7 10 304 3 268 7.34e-27 111
MS.gene92903.t1 MTR_3g005420 26.756 299 177 8 9 306 282 539 3.37e-26 108
MS.gene92903.t1 MTR_3g005420 33.600 125 81 2 13 136 37 160 1.60e-16 80.5
MS.gene92903.t1 MTR_5g070440 25.926 297 176 7 12 306 17 271 2.40e-25 102
MS.gene92903.t1 MTR_1g035520 28.025 314 179 9 25 302 81 383 3.13e-25 104
MS.gene92903.t1 MTR_1g035480 38.806 134 76 3 16 149 17 144 4.22e-24 97.1
MS.gene92903.t1 MTR_3g061290 34.161 161 88 4 16 169 12 161 1.53e-23 96.3
MS.gene92903.t1 MTR_3g005495 34.532 139 90 1 9 147 236 373 2.74e-21 94.4
MS.gene92903.t1 MTR_3g005495 33.010 103 68 1 32 134 29 130 2.56e-15 76.6
MS.gene92903.t1 MTR_1g033740 35.075 134 80 3 16 149 22 148 1.26e-20 88.2
MS.gene92903.t1 MTR_7g050640 41.748 103 56 1 7 109 8 106 1.98e-20 85.5
MS.gene92903.t1 MTR_1g035650 30.222 225 123 7 10 224 3 203 2.91e-20 87.4
MS.gene92903.t1 MTR_1g035500 35.115 131 79 3 16 146 25 149 3.29e-20 86.7
MS.gene92903.t1 MTR_1g021360 23.711 291 201 7 27 306 193 473 6.04e-20 90.5
MS.gene92903.t1 MTR_1g021330 22.857 350 218 8 17 316 26 373 8.56e-20 89.4
MS.gene92903.t1 MTR_1g034240 31.667 180 110 3 16 195 7 173 2.16e-19 88.6
MS.gene92903.t1 MTR_1g035510 43.103 116 58 4 31 146 1 108 3.40e-18 82.0
MS.gene92903.t1 MTR_4g068320 33.103 145 96 1 13 157 3 146 4.03e-18 84.7
MS.gene92903.t1 MTR_3g061220 34.746 118 60 3 16 133 12 112 5.48e-18 79.0
MS.gene92903.t1 MTR_1g034210 38.776 98 60 0 16 113 7 104 6.12e-18 83.2
MS.gene92903.t1 MTR_1g035470 38.793 116 64 4 31 146 1 109 9.16e-18 79.0
MS.gene92903.t1 MTR_1g034210 38.776 98 60 0 16 113 7 104 1.14e-17 83.2
MS.gene92903.t1 MTR_1g035440 38.000 100 61 1 16 114 15 114 6.81e-17 79.0
MS.gene92903.t1 MTR_3g005420 33.600 125 81 2 13 136 18 141 1.34e-16 80.5
MS.gene92903.t1 MTR_1g021400 24.359 312 195 12 27 301 41 348 3.15e-16 79.0
MS.gene92903.t1 MTR_3g005440 37.647 85 53 0 30 114 34 118 2.65e-15 76.6
MS.gene92903.t1 MTR_3g005440 33.333 108 71 1 20 127 246 352 2.21e-14 73.6
MS.gene92903.t1 MTR_1g098450 22.571 319 196 11 16 315 12 298 1.15e-13 70.9
MS.gene92903.t1 MTR_1g035490 33.654 104 66 2 205 306 97 199 4.85e-13 69.3
MS.gene92903.t1 MTR_1g021350 20.183 327 188 8 17 299 22 319 2.13e-12 67.4
MS.gene92903.t1 MTR_1g021440 34.444 90 59 0 17 106 23 112 5.16e-12 65.9
MS.gene92903.t1 MTR_1g021440 34.444 90 59 0 17 106 23 112 5.60e-12 65.5
MS.gene92903.t1 MTR_1g021320 38.750 80 49 0 27 106 193 272 6.35e-12 66.6
MS.gene92903.t1 MTR_1g021440 34.444 90 59 0 17 106 23 112 9.24e-12 65.9
MS.gene92903.t1 MTR_1g021440 34.444 90 59 0 17 106 23 112 1.15e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92903.t1 AT3G18990 28.571 343 184 10 16 306 6 339 1.18e-32 124
MS.gene92903.t1 AT3G18990 28.280 343 185 10 16 306 6 339 3.84e-32 122
MS.gene92903.t1 AT4G01580 38.095 147 75 4 16 161 30 161 6.40e-20 86.3
MS.gene92903.t1 AT3G18960 41.414 99 58 0 16 114 30 128 7.28e-18 80.5
MS.gene92903.t1 AT3G18960 41.414 99 58 0 16 114 30 128 9.85e-18 80.5
MS.gene92903.t1 AT1G49475 35.669 157 88 5 16 166 34 183 2.80e-17 79.0
MS.gene92903.t1 AT4G33280 22.603 292 205 7 30 306 37 322 1.02e-15 77.0
MS.gene92903.t1 AT3G18960 42.169 83 48 0 32 114 9 91 9.30e-14 68.9

Find 57 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCAAATGGTGATAAA+TGG 0.158299 5.1:+33067565 MS.gene92903:CDS
AGCATTGAACTTGAAGTTTA+AGG 0.206027 5.1:-33068553 None:intergenic
CTTTCCATTCAAATACTCTT+TGG 0.236141 5.1:-33068484 None:intergenic
GTGATAAATGGGAAGTAAAT+TGG 0.244779 5.1:+33067577 MS.gene92903:CDS
GCGCTTTGGAAATGGATTAT+TGG 0.263628 5.1:+33067736 MS.gene92903:CDS
AGACGATTATATTGAGATTT+CGG 0.264534 5.1:+33067833 MS.gene92903:CDS
ATGCAACGGGCGAATGAAAA+AGG 0.275521 5.1:-33068192 None:intergenic
TTTGGTAGAACTAGGGTTAC+TGG 0.318076 5.1:-33067552 None:intergenic
CATGACGTTGTGTTTCAAAA+TGG 0.334132 5.1:+33067612 MS.gene92903:CDS
AAACACTACAAAATACTAAA+AGG 0.340468 5.1:+33068141 MS.gene92903:CDS
TTTCTTTCAACTTGATCTCT+AGG 0.366619 5.1:-33067771 None:intergenic
CATCAAATGAAGCTATGAAT+TGG 0.370847 5.1:+33068114 MS.gene92903:CDS
TCAACTTGATCTCTAGGGCT+TGG 0.372702 5.1:-33067765 None:intergenic
GATATTTGACAAAAGCGCTT+TGG 0.378554 5.1:+33067722 MS.gene92903:CDS
CAACACTATTCAATGAGTTA+TGG 0.379815 5.1:+33067651 MS.gene92903:CDS
TGACAAAAGCGCTTTGGAAA+TGG 0.381408 5.1:+33067728 MS.gene92903:CDS
TCTTGCTCCGCGCACTTTCA+AGG 0.393318 5.1:+33068720 MS.gene92903:CDS
AACACTATTCAATGAGTTAT+GGG 0.394195 5.1:+33067652 MS.gene92903:CDS
GAGGAATATAATTTCAAAGT+TGG 0.395164 5.1:+33068621 MS.gene92903:CDS
TTTACAATTTCAGGAGGTAA+TGG 0.402632 5.1:+33068062 MS.gene92903:intron
CCTTTGAGATGGACCATCAC+TGG 0.419968 5.1:-33067910 None:intergenic
TCCATCCTACCTTGAACATA+TGG 0.422875 5.1:+33068214 MS.gene92903:CDS
ACTTCCCATTTATCACCATT+TGG 0.427050 5.1:-33067570 None:intergenic
GGGATTGCAACCGTGGTGTT+TGG 0.435175 5.1:+33068510 MS.gene92903:CDS
AGTTATGAGTGCTCGATTAG+TGG 0.441965 5.1:-33068577 None:intergenic
TCTACCAAATGGTGATAAAT+GGG 0.445463 5.1:+33067566 MS.gene92903:CDS
TTCTTTCAACTTGATCTCTA+GGG 0.452245 5.1:-33067770 None:intergenic
GAGTATTTGAATGGAAAGGA+TGG 0.463140 5.1:+33068489 MS.gene92903:CDS
AATCGAGCACTCATAACTTC+TGG 0.465532 5.1:+33068582 MS.gene92903:CDS
CGTTGTGTTTCAAAATGGTT+GGG 0.465755 5.1:+33067617 MS.gene92903:CDS
CAATGTAACAGATGATTCCT+AGG 0.470035 5.1:+33067493 MS.gene92903:intron
TATCACCATTTGGTAGAACT+AGG 0.471668 5.1:-33067560 None:intergenic
GTTATCGGAATGAAAATTCA+TGG 0.486333 5.1:-33068168 None:intergenic
TATTTCTTCACAAAACTCCT+AGG 0.496072 5.1:-33067510 None:intergenic
CAAAGAGTATTTGAATGGAA+AGG 0.500378 5.1:+33068485 MS.gene92903:CDS
TACTCTTTGGAAAACGATGT+TGG 0.517680 5.1:-33068471 None:intergenic
TTGGTAGAACTAGGGTTACT+GGG 0.523068 5.1:-33067551 None:intergenic
CAAGGTAGGATGGATGCAAC+GGG 0.527483 5.1:-33068205 None:intergenic
ATCACCATTTGGTAGAACTA+GGG 0.529841 5.1:-33067559 None:intergenic
ACCATATGTTCAAGGTAGGA+TGG 0.542632 5.1:-33068215 None:intergenic
GTAACCCTAGTTCTACCAAA+TGG 0.543476 5.1:+33067555 MS.gene92903:CDS
ATATAGATACCATATGTTCA+AGG 0.544245 5.1:-33068223 None:intergenic
AGTATTTGAATGGAAAGGAT+GGG 0.554047 5.1:+33068490 MS.gene92903:CDS
CGCGGAGCAAGATTGATCAC+TGG 0.555616 5.1:-33068709 None:intergenic
ACGTTGTGTTTCAAAATGGT+TGG 0.559115 5.1:+33067616 MS.gene92903:CDS
AAAAGAATGAAAACCAGTGA+TGG 0.566067 5.1:+33067897 MS.gene92903:CDS
AACCGTGGTGTTTGGTGATG+AGG 0.573245 5.1:+33068518 MS.gene92903:CDS
GAGCACTCATAACTTCTGGT+TGG 0.583650 5.1:+33068586 MS.gene92903:CDS
TGGTTGGAGACAAATTGTTG+AGG 0.606845 5.1:+33068602 MS.gene92903:CDS
TCAAGGTAGGATGGATGCAA+CGG 0.607292 5.1:-33068206 None:intergenic
AGATACCATATGTTCAAGGT+AGG 0.608884 5.1:-33068219 None:intergenic
TGGAACTGATGAACAACACT+CGG 0.613370 5.1:-33067274 None:intergenic
TTTAATACCTTGAAAGTGCG+CGG 0.633523 5.1:-33068727 None:intergenic
CATGAAGATGCTGAAAAGAG+TGG 0.644431 5.1:+33067804 MS.gene92903:CDS
AAAGGATGGGATTGCAACCG+TGG 0.682554 5.1:+33068503 MS.gene92903:CDS
ATCCTCATCACCAAACACCA+CGG 0.689007 5.1:-33068520 None:intergenic
TTGGTGATGAGGATAAGACT+TGG 0.724527 5.1:+33068529 MS.gene92903:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAACTAAAAAGAA+TGG - chr5.1:33068338-33068357 None:intergenic 10.0%
!! AAAGTAGAAAACTAAATAAA+AGG - chr5.1:33067373-33067392 None:intergenic 15.0%
!! AGAAAAAAATATCAAGATTT+AGG - chr5.1:33068420-33068439 None:intergenic 15.0%
!!! AGTATTTTTTTTACAATTTC+AGG + chr5.1:33068053-33068072 MS.gene92903:intron 15.0%
!!! CTTTTTAGTTTAATTAATGA+AGG + chr5.1:33068340-33068359 MS.gene92903:intron 15.0%
!!! GTTTTCTACTTTAATATTTT+TGG + chr5.1:33067381-33067400 MS.gene92903:intron 15.0%
!! AAACACTACAAAATACTAAA+AGG + chr5.1:33068141-33068160 MS.gene92903:CDS 20.0%
!! AAAGAAGGAAAAAATTAATG+TGG + chr5.1:33067941-33067960 MS.gene92903:intron 20.0%
!! AATGTGGATAAAAAAATCAA+AGG + chr5.1:33067957-33067976 MS.gene92903:intron 20.0%
!! GTATCAATTTAACATTATGA+TGG - chr5.1:33068021-33068040 None:intergenic 20.0%
!! TATGAATGTGTCTAAATAAA+AGG - chr5.1:33067413-33067432 None:intergenic 20.0%
!! TCTTGTGTTTAAATGATAAT+TGG + chr5.1:33068437-33068456 MS.gene92903:intron 20.0%
!! TTAAACTAAAAAGAATGGAA+AGG - chr5.1:33068333-33068352 None:intergenic 20.0%
!! TTAAACTAGATAGTAAAATG+TGG - chr5.1:33068274-33068293 None:intergenic 20.0%
!!! ATTTTTTTTACAATTTCAGG+AGG + chr5.1:33068056-33068075 MS.gene92903:intron 20.0%
!!! CATTAATTTTTTCCTTCTTT+AGG - chr5.1:33067941-33067960 None:intergenic 20.0%
!!! TACAATCTCTTTCTTTTTAA+GGG - chr5.1:33067338-33067357 None:intergenic 20.0%
!!! TTACAATCTCTTTCTTTTTA+AGG - chr5.1:33067339-33067358 None:intergenic 20.0%
! AACACTATTCAATGAGTTAT+GGG + chr5.1:33067652-33067671 MS.gene92903:CDS 25.0%
! AGACGATTATATTGAGATTT+CGG + chr5.1:33067833-33067852 MS.gene92903:CDS 25.0%
! ATATAGATACCATATGTTCA+AGG - chr5.1:33068226-33068245 None:intergenic 25.0%
! GAGGAATATAATTTCAAAGT+TGG + chr5.1:33068621-33068640 MS.gene92903:CDS 25.0%
! GAGGAGAATAATTAAAATGA+AGG - chr5.1:33067999-33068018 None:intergenic 25.0%
! TCAATTTAACATTATGATGG+AGG - chr5.1:33068018-33068037 None:intergenic 25.0%
! TGAAAAAACATTGTGACTTA+TGG - chr5.1:33067297-33067316 None:intergenic 25.0%
!! ATGTGGAAATTGATTCTAAA+AGG - chr5.1:33068257-33068276 None:intergenic 25.0%
!!! TAGTTTTTAGACTTGAAACA+AGG + chr5.1:33067682-33067701 MS.gene92903:CDS 25.0%
!!! TTTCTTTTTAGTGCAATTGT+TGG + chr5.1:33067435-33067454 MS.gene92903:intron 25.0%
!!! TTTTCCAAAGAGTATTTGAA+TGG + chr5.1:33068480-33068499 MS.gene92903:CDS 25.0%
AAAAGAATGAAAACCAGTGA+TGG + chr5.1:33067897-33067916 MS.gene92903:CDS 30.0%
AGTATTTGAATGGAAAGGAT+GGG + chr5.1:33068490-33068509 MS.gene92903:CDS 30.0%
CAACACTATTCAATGAGTTA+TGG + chr5.1:33067651-33067670 MS.gene92903:CDS 30.0%
CATCAAATGAAGCTATGAAT+TGG + chr5.1:33068114-33068133 MS.gene92903:CDS 30.0%
CTTTCCATTCAAATACTCTT+TGG - chr5.1:33068487-33068506 None:intergenic 30.0%
GTGATAAATGGGAAGTAAAT+TGG + chr5.1:33067577-33067596 MS.gene92903:CDS 30.0%
GTTATCGGAATGAAAATTCA+TGG - chr5.1:33068171-33068190 None:intergenic 30.0%
TATTTCTTCACAAAACTCCT+AGG - chr5.1:33067513-33067532 None:intergenic 30.0%
TCAAAGGAAAAACCTAAAGA+AGG + chr5.1:33067926-33067945 MS.gene92903:intron 30.0%
TCTACCAAATGGTGATAAAT+GGG + chr5.1:33067566-33067585 MS.gene92903:CDS 30.0%
TTCTACCAAATGGTGATAAA+TGG + chr5.1:33067565-33067584 MS.gene92903:CDS 30.0%
TTCTTTCAACTTGATCTCTA+GGG - chr5.1:33067773-33067792 None:intergenic 30.0%
TTTACAATTTCAGGAGGTAA+TGG + chr5.1:33068062-33068081 MS.gene92903:intron 30.0%
TTTCTTTCAACTTGATCTCT+AGG - chr5.1:33067774-33067793 None:intergenic 30.0%
! AGCATTGAACTTGAAGTTTA+AGG - chr5.1:33068556-33068575 None:intergenic 30.0%
!! AGGAGTTTTGTGAAGAAATA+TGG + chr5.1:33067513-33067532 MS.gene92903:CDS 30.0%
!! CAAAGAGTATTTGAATGGAA+AGG + chr5.1:33068485-33068504 MS.gene92903:CDS 30.0%
!! GGAGTTTTGTGAAGAAATAT+GGG + chr5.1:33067514-33067533 MS.gene92903:CDS 30.0%
!! TTTAGGTTTTTCCTTTGAGA+TGG - chr5.1:33067924-33067943 None:intergenic 30.0%
!!! ATTTTGAAACACAACGTCAT+GGG - chr5.1:33067613-33067632 None:intergenic 30.0%
ACGTTGTGTTTCAAAATGGT+TGG + chr5.1:33067616-33067635 MS.gene92903:CDS 35.0%
ACTTCCCATTTATCACCATT+TGG - chr5.1:33067573-33067592 None:intergenic 35.0%
AGATACCATATGTTCAAGGT+AGG - chr5.1:33068222-33068241 None:intergenic 35.0%
ATCACCATTTGGTAGAACTA+GGG - chr5.1:33067562-33067581 None:intergenic 35.0%
CAATGTAACAGATGATTCCT+AGG + chr5.1:33067493-33067512 MS.gene92903:intron 35.0%
CATGACGTTGTGTTTCAAAA+TGG + chr5.1:33067612-33067631 MS.gene92903:CDS 35.0%
CGTTGTGTTTCAAAATGGTT+GGG + chr5.1:33067617-33067636 MS.gene92903:CDS 35.0%
GAGTATTTGAATGGAAAGGA+TGG + chr5.1:33068489-33068508 MS.gene92903:CDS 35.0%
TATCACCATTTGGTAGAACT+AGG - chr5.1:33067563-33067582 None:intergenic 35.0%
! TACTCTTTGGAAAACGATGT+TGG - chr5.1:33068474-33068493 None:intergenic 35.0%
! TTTAATACCTTGAAAGTGCG+CGG - chr5.1:33068730-33068749 None:intergenic 35.0%
!! CTGGTTTTCATTCTTTTCTG+AGG - chr5.1:33067894-33067913 None:intergenic 35.0%
!! GATATTTGACAAAAGCGCTT+TGG + chr5.1:33067722-33067741 MS.gene92903:CDS 35.0%
!!! CATTTTGAAACACAACGTCA+TGG - chr5.1:33067614-33067633 None:intergenic 35.0%
AATCGAGCACTCATAACTTC+TGG + chr5.1:33068582-33068601 MS.gene92903:CDS 40.0%
ACCATATGTTCAAGGTAGGA+TGG - chr5.1:33068218-33068237 None:intergenic 40.0%
AGTTATGAGTGCTCGATTAG+TGG - chr5.1:33068580-33068599 None:intergenic 40.0%
CATGAAGATGCTGAAAAGAG+TGG + chr5.1:33067804-33067823 MS.gene92903:CDS 40.0%
GCGAATGAAAAAGGGGTTAT+CGG - chr5.1:33068186-33068205 None:intergenic 40.0%
TCCATCCTACCTTGAACATA+TGG + chr5.1:33068214-33068233 MS.gene92903:CDS 40.0%
TGGAACTGATGAACAACACT+CGG - chr5.1:33067277-33067296 None:intergenic 40.0%
TGGTTGGAGACAAATTGTTG+AGG + chr5.1:33068602-33068621 MS.gene92903:CDS 40.0%
TTGGTAGAACTAGGGTTACT+GGG - chr5.1:33067554-33067573 None:intergenic 40.0%
TTTGGTAGAACTAGGGTTAC+TGG - chr5.1:33067555-33067574 None:intergenic 40.0%
!! GCGCTTTGGAAATGGATTAT+TGG + chr5.1:33067736-33067755 MS.gene92903:CDS 40.0%
!! GTAACCCTAGTTCTACCAAA+TGG + chr5.1:33067555-33067574 MS.gene92903:CDS 40.0%
!! TGACAAAAGCGCTTTGGAAA+TGG + chr5.1:33067728-33067747 MS.gene92903:CDS 40.0%
!! TTGGTGATGAGGATAAGACT+TGG + chr5.1:33068529-33068548 MS.gene92903:CDS 40.0%
!!! TTCATTCTTTTCTGAGGTCG+AGG - chr5.1:33067888-33067907 None:intergenic 40.0%
ATCCTCATCACCAAACACCA+CGG - chr5.1:33068523-33068542 None:intergenic 45.0%
ATGCAACGGGCGAATGAAAA+AGG - chr5.1:33068195-33068214 None:intergenic 45.0%
GAGCACTCATAACTTCTGGT+TGG + chr5.1:33068586-33068605 MS.gene92903:CDS 45.0%
TCAAGGTAGGATGGATGCAA+CGG - chr5.1:33068209-33068228 None:intergenic 45.0%
TGCAACGGGCGAATGAAAAA+GGG - chr5.1:33068194-33068213 None:intergenic 45.0%
!! TCAACTTGATCTCTAGGGCT+TGG - chr5.1:33067768-33067787 None:intergenic 45.0%
AAAGGATGGGATTGCAACCG+TGG + chr5.1:33068503-33068522 MS.gene92903:CDS 50.0%
CAAGGTAGGATGGATGCAAC+GGG - chr5.1:33068208-33068227 None:intergenic 50.0%
CCAGTGATGGTCCATCTCAA+AGG + chr5.1:33067910-33067929 MS.gene92903:intron 50.0%
GCAACGGGCGAATGAAAAAG+GGG - chr5.1:33068193-33068212 None:intergenic 50.0%
!! AACCGTGGTGTTTGGTGATG+AGG + chr5.1:33068518-33068537 MS.gene92903:CDS 50.0%
!! CCTTTGAGATGGACCATCAC+TGG - chr5.1:33067913-33067932 None:intergenic 50.0%
CGCGGAGCAAGATTGATCAC+TGG - chr5.1:33068712-33068731 None:intergenic 55.0%
GGGATTGCAACCGTGGTGTT+TGG + chr5.1:33068510-33068529 MS.gene92903:CDS 55.0%
TCTTGCTCCGCGCACTTTCA+AGG + chr5.1:33068720-33068739 MS.gene92903:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 33067265 33068752 33067265 ID=MS.gene92903
chr5.1 mRNA 33067265 33068752 33067265 ID=MS.gene92903.t1;Parent=MS.gene92903
chr5.1 exon 33067265 33067354 33067265 ID=MS.gene92903.t1.exon1;Parent=MS.gene92903.t1
chr5.1 CDS 33067265 33067354 33067265 ID=cds.MS.gene92903.t1;Parent=MS.gene92903.t1
chr5.1 exon 33067504 33067918 33067504 ID=MS.gene92903.t1.exon2;Parent=MS.gene92903.t1
chr5.1 CDS 33067504 33067918 33067504 ID=cds.MS.gene92903.t1;Parent=MS.gene92903.t1
chr5.1 exon 33068075 33068235 33068075 ID=MS.gene92903.t1.exon3;Parent=MS.gene92903.t1
chr5.1 CDS 33068075 33068235 33068075 ID=cds.MS.gene92903.t1;Parent=MS.gene92903.t1
chr5.1 exon 33068465 33068752 33068465 ID=MS.gene92903.t1.exon4;Parent=MS.gene92903.t1
chr5.1 CDS 33068465 33068752 33068465 ID=cds.MS.gene92903.t1;Parent=MS.gene92903.t1
Gene Sequence

>MS.gene92903

ATGTCTTCTCCGAGTGTTGTTCATCAGTTCCATAAGTCACAATGTTTTTTCAAAGTCATCGTCGAGAAAACCCTTAAAAAGAAAGAGATTGTAAGTGCATGTTAACCTTTTATTTAGTTTTCTACTTTAATATTTTTGGTCACAACCTTTTATTTAGACACATTCATAGCTTTCTTTTTAGTGCAATTGTTGGAGTAATAGTATAATTTTTTATTACTAAAATGTTTACAATGTAACAGATGATTCCTAGGAGTTTTGTGAAGAAATATGGGAAAAAATTATCAAACCCAGTAACCCTAGTTCTACCAAATGGTGATAAATGGGAAGTAAATTGGATAAAACGTGCCCATGACGTTGTGTTTCAAAATGGTTGGGAAAAATTTGCACAACACTATTCAATGAGTTATGGGCATTTTTTAGTTTTTAGACTTGAAACAAGGTCTCAATTTCAAGTAATGATATTTGACAAAAGCGCTTTGGAAATGGATTATTGGAGTATACCAAGCCCTAGAGATCAAGTTGAAAGAAACATTCATCATCATGAAGATGCTGAAAAGAGTGGCGATAAAGACGATTATATTGAGATTTCGGATGAGAGTGAAATGCGAAGATCTTCATCACCTCGACCTCAGAAAAGAATGAAAACCAGTGATGGTCCATCTCAAAGGAAAAACCTAAAGAAGGAAAAAATTAATGTGGATAAAAAAATCAAAGGAAAGTTATAATTTTCTCCTTCATTTTAATTATTCTCCTCCATCATAATGTTAAATTGATACTTGAATGCTGAAAGTATTTTTTTTACAATTTCAGGAGGTAATGGAGAAAATTTCTTCAAAGCAAAGAATGACTCATCAAATGAAGCTATGAATTGGAAAGAAACACTACAAAATACTAAAAGGAGAGCCATGAATTTTCATTCCGATAACCCCTTTTTCATTCGCCCGTTGCATCCATCCTACCTTGAACATATGGTATCTATATTGTTTATTCCTTTTAGAATCAATTTCCACATTTTACTATCTAGTTTAACAATCTAGAAATGTTTTCATATATAATTCATGTATTCCTTTCCATTCTTTTTAGTTTAATTAATGAAGGATTTATTTTTATTCTTCTCAAACAACACAAGAGTATATAATAGTTAGATTTAAACCTAAATCTTGATATTTTTTTCTTGTGTTTAAATGATAATTGGATCAGTTTATACCAACATCGTTTTCCAAAGAGTATTTGAATGGAAAGGATGGGATTGCAACCGTGGTGTTTGGTGATGAGGATAAGACTTGGTCCTTAAACTTCAAGTTCAATGCTACCACTAATCGAGCACTCATAACTTCTGGTTGGAGACAAATTGTTGAGGAATATAATTTCAAAGTTGGTGACACTTGTGTGTTTGAGATGACTGATAGTACAAATATCTTATTTAAAGTCTATATTGTTCGAGCCAGTGATCAATCTTGCTCCGCGCACTTTCAAGGTATTAAATAA
Protein sequence

>MS.gene92903.t1

MSSPSVVHQFHKSQCFFKVIVEKTLKKKEIMIPRSFVKKYGKKLSNPVTLVLPNGDKWEVNWIKRAHDVVFQNGWEKFAQHYSMSYGHFLVFRLETRSQFQVMIFDKSALEMDYWSIPSPRDQVERNIHHHEDAEKSGDKDDYIEISDESEMRRSSSPRPQKRMKTSDGGNGENFFKAKNDSSNEAMNWKETLQNTKRRAMNFHSDNPFFIRPLHPSYLEHMFIPTSFSKEYLNGKDGIATVVFGDEDKTWSLNFKFNATTNRALITSGWRQIVEEYNFKVGDTCVFEMTDSTNILFKVYIVRASDQSCSAHFQGIK