Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93116.t1 | XP_013470391.1 | 91.8 | 354 | 20 | 2 | 1 | 352 | 1 | 347 | 6.70E-181 | 643.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93116.t1 | Q9FIM0 | 27.0 | 215 | 137 | 6 | 6 | 217 | 6 | 203 | 7.9e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93116.t1 | A0A072VR19 | 91.8 | 354 | 20 | 2 | 1 | 352 | 1 | 347 | 4.8e-181 | 643.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93116.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93116.t1 | MTR_1g114730 | 91.808 | 354 | 20 | 2 | 1 | 352 | 1 | 347 | 0.0 | 650 |
| MS.gene93116.t1 | MTR_6g018920 | 73.315 | 356 | 81 | 3 | 1 | 352 | 1 | 346 | 0.0 | 528 |
| MS.gene93116.t1 | MTR_6g005450 | 61.944 | 360 | 116 | 7 | 1 | 352 | 1 | 347 | 2.87e-145 | 414 |
| MS.gene93116.t1 | MTR_6g005440 | 56.742 | 356 | 109 | 6 | 1 | 352 | 1 | 315 | 5.74e-132 | 379 |
| MS.gene93116.t1 | MTR_4g107170 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 7.77e-36 | 131 |
| MS.gene93116.t1 | MTR_2g049610 | 43.590 | 156 | 82 | 2 | 1 | 156 | 1 | 150 | 6.00e-34 | 125 |
| MS.gene93116.t1 | MTR_4g045977 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 1.14e-30 | 120 |
| MS.gene93116.t1 | MTR_2g049530 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 3.25e-29 | 111 |
| MS.gene93116.t1 | MTR_2g049630 | 37.017 | 181 | 109 | 2 | 2 | 181 | 4 | 180 | 7.67e-29 | 115 |
| MS.gene93116.t1 | MTR_0061s0010 | 42.553 | 141 | 20 | 3 | 29 | 169 | 1 | 80 | 3.25e-22 | 91.3 |
| MS.gene93116.t1 | MTR_1g115290 | 29.371 | 143 | 100 | 1 | 44 | 186 | 8 | 149 | 2.48e-19 | 84.0 |
| MS.gene93116.t1 | MTR_5g075380 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.25e-15 | 73.9 |
| MS.gene93116.t1 | MTR_3g031100 | 35.294 | 102 | 59 | 3 | 1 | 101 | 1 | 96 | 2.40e-14 | 72.4 |
| MS.gene93116.t1 | MTR_3g102570 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 3.34e-14 | 72.8 |
| MS.gene93116.t1 | MTR_3g466980 | 23.478 | 230 | 151 | 8 | 1 | 214 | 1 | 221 | 3.70e-14 | 71.2 |
| MS.gene93116.t1 | MTR_4g032620 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 2.34e-13 | 69.3 |
| MS.gene93116.t1 | MTR_3g031240 | 30.088 | 113 | 72 | 3 | 1 | 112 | 1 | 107 | 3.00e-12 | 65.1 |
| MS.gene93116.t1 | MTR_8g086290 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 4.03e-12 | 64.3 |
| MS.gene93116.t1 | MTR_3g466890 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.59e-11 | 62.4 |
| MS.gene93116.t1 | MTR_2g017865 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 2.10e-11 | 63.9 |
| MS.gene93116.t1 | MTR_2g016210 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 3.43e-11 | 63.2 |
| MS.gene93116.t1 | MTR_3g065100 | 25.703 | 249 | 138 | 8 | 1 | 214 | 1 | 237 | 4.25e-11 | 62.8 |
| MS.gene93116.t1 | MTR_1g090710 | 30.357 | 112 | 65 | 4 | 1 | 105 | 1 | 106 | 4.94e-11 | 60.8 |
| MS.gene93116.t1 | MTR_3g466830 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 4.95e-11 | 60.8 |
| MS.gene93116.t1 | MTR_3g088615 | 27.922 | 154 | 93 | 4 | 1 | 151 | 1 | 139 | 6.87e-11 | 61.2 |
| MS.gene93116.t1 | MTR_8g087860 | 28.289 | 152 | 100 | 3 | 1 | 152 | 17 | 159 | 9.07e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93116.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.70e-25 | 103 |
| MS.gene93116.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.70e-25 | 103 |
| MS.gene93116.t1 | AT5G58890 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 4.58e-18 | 84.0 |
| MS.gene93116.t1 | AT3G18650 | 29.240 | 171 | 107 | 5 | 16 | 180 | 31 | 193 | 2.36e-15 | 77.0 |
| MS.gene93116.t1 | AT1G65330 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 6.09e-13 | 68.9 |
| MS.gene93116.t1 | AT1G65300 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 7.55e-13 | 68.6 |
| MS.gene93116.t1 | AT1G22590 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 8.80e-13 | 66.2 |
| MS.gene93116.t1 | AT3G05860 | 38.462 | 78 | 40 | 3 | 1 | 77 | 1 | 71 | 1.61e-12 | 66.2 |
| MS.gene93116.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.05e-12 | 66.6 |
| MS.gene93116.t1 | AT2G28700 | 26.842 | 190 | 117 | 7 | 1 | 182 | 1 | 176 | 2.20e-12 | 67.8 |
| MS.gene93116.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.49e-12 | 66.6 |
| MS.gene93116.t1 | AT5G23260 | 27.329 | 161 | 100 | 4 | 1 | 157 | 1 | 148 | 4.48e-12 | 65.5 |
| MS.gene93116.t1 | AT5G26650 | 33.333 | 111 | 63 | 4 | 5 | 112 | 3 | 105 | 6.35e-12 | 66.6 |
| MS.gene93116.t1 | AT2G40210 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 3.15e-11 | 64.3 |
| MS.gene93116.t1 | AT5G27960 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 3.60e-11 | 63.9 |
| MS.gene93116.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.06e-11 | 64.3 |
| MS.gene93116.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.06e-11 | 64.3 |
| MS.gene93116.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.06e-11 | 64.3 |
| MS.gene93116.t1 | AT5G23260 | 25.882 | 170 | 100 | 4 | 1 | 157 | 17 | 173 | 4.10e-11 | 63.2 |
| MS.gene93116.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.60e-11 | 63.9 |
| MS.gene93116.t1 | AT5G13790 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 6.44e-11 | 62.8 |
| MS.gene93116.t1 | AT4G09960 | 27.848 | 158 | 97 | 5 | 1 | 154 | 11 | 155 | 8.50e-11 | 62.0 |
| MS.gene93116.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 2 | 146 | 9.29e-11 | 61.6 |
| MS.gene93116.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 1 | 145 | 9.35e-11 | 61.6 |
Find 75 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTCCATATTGATTT+TGG | 0.055519 | 1.1:+80572223 | None:intergenic |
| CAACATGTATTTCAACTTAA+TGG | 0.129535 | 1.1:-80572083 | MS.gene93116:CDS |
| TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | 1.1:+80572887 | None:intergenic |
| TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | 1.1:-80572310 | MS.gene93116:CDS |
| AAATCCACGACCTACAAAAT+TGG | 0.234450 | 1.1:+80572916 | None:intergenic |
| TACAAGAATATTGATGTTAA+TGG | 0.237026 | 1.1:-80572320 | MS.gene93116:CDS |
| GCATTTCCATTGTAATAGTA+TGG | 0.257144 | 1.1:+80572170 | None:intergenic |
| ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | 1.1:+80573032 | None:intergenic |
| ACAAGAATATTGATGTTAAT+GGG | 0.303821 | 1.1:-80572319 | MS.gene93116:CDS |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 1.1:-80572251 | MS.gene93116:CDS |
| GATATTATTTGCTAGCAAAC+TGG | 0.357133 | 1.1:-80572666 | MS.gene93116:CDS |
| AATGAATCTTTCAATTCTCT+TGG | 0.359377 | 1.1:-80572701 | MS.gene93116:CDS |
| GATTTGAGAGATTCTGAAAA+GGG | 0.362382 | 1.1:+80572108 | None:intergenic |
| GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 1.1:-80573062 | MS.gene93116:CDS |
| TGATGTTAATGGGGCTAATT+GGG | 0.367522 | 1.1:-80572309 | MS.gene93116:CDS |
| ATTAACATCAATATTCTTGT+AGG | 0.368101 | 1.1:+80572322 | None:intergenic |
| TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | 1.1:-80572300 | MS.gene93116:CDS |
| AATGTTAATGATACCTATAA+TGG | 0.373254 | 1.1:-80572275 | MS.gene93116:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | 1.1:+80572809 | None:intergenic |
| ATGTTAATGATACCTATAAT+GGG | 0.375349 | 1.1:-80572274 | MS.gene93116:CDS |
| ATCATTAACATTAACCTGAT+TGG | 0.375551 | 1.1:+80572286 | None:intergenic |
| ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | 1.1:+80572382 | None:intergenic |
| CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | 1.1:-80572231 | MS.gene93116:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 1.1:-80572250 | MS.gene93116:CDS |
| TATGCTAAAAGAAGATCATA+AGG | 0.417664 | 1.1:-80572609 | MS.gene93116:CDS |
| AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | 1.1:-80572207 | MS.gene93116:CDS |
| TTATCACTAATATTCATCAT+TGG | 0.435936 | 1.1:+80572467 | None:intergenic |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 1.1:+80572958 | None:intergenic |
| ACTATAACACAACAAATGAT+AGG | 0.448494 | 1.1:-80572835 | MS.gene93116:CDS |
| AGATTTGAGAGATTCTGAAA+AGG | 0.451030 | 1.1:+80572107 | None:intergenic |
| TTAACATCAATATTCTTGTA+GGG | 0.460944 | 1.1:+80572323 | None:intergenic |
| GGGAGAGTGTGCAAGGCAAT+AGG | 0.469982 | 1.1:+80572128 | None:intergenic |
| AATCCACGACCTACAAAATT+GGG | 0.470390 | 1.1:+80572917 | None:intergenic |
| TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | 1.1:+80572745 | None:intergenic |
| CAAGCTCATATGTTCATGAA+TGG | 0.478657 | 1.1:-80572038 | MS.gene93116:CDS |
| ATCTATGGAACTCATCCAAA+AGG | 0.478947 | 1.1:-80573047 | MS.gene93116:CDS |
| GAAGTAGTAACTAGGATTCA+AGG | 0.479038 | 1.1:+80572532 | None:intergenic |
| GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | 1.1:+80572416 | None:intergenic |
| TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | 1.1:+80572710 | None:intergenic |
| TCACTAATATTCATCATTGG+AGG | 0.494747 | 1.1:+80572470 | None:intergenic |
| ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | 1.1:-80572218 | MS.gene93116:CDS |
| CAAAATCAATATGGAAAGGA+AGG | 0.508161 | 1.1:-80572222 | MS.gene93116:CDS |
| GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | 1.1:-80573011 | MS.gene93116:CDS |
| TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | 1.1:+80572439 | None:intergenic |
| CTCATATGTTCATGAATGGA+AGG | 0.537554 | 1.1:-80572034 | MS.gene93116:CDS |
| TCGTCACCATACTATTACAA+TGG | 0.539170 | 1.1:-80572176 | MS.gene93116:CDS |
| TAAAGATGATGTATCCAACT+TGG | 0.548629 | 1.1:-80572724 | MS.gene93116:CDS |
| ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | 1.1:-80572696 | MS.gene93116:CDS |
| ACTTAATGGATTCAATGCTA+AGG | 0.552446 | 1.1:-80572069 | MS.gene93116:CDS |
| ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | 1.1:+80572398 | None:intergenic |
| ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | 1.1:-80572608 | MS.gene93116:CDS |
| ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | 1.1:-80573007 | MS.gene93116:CDS |
| GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | 1.1:+80572425 | None:intergenic |
| ATGAGATTGAAGTAGTAACT+AGG | 0.569090 | 1.1:+80572524 | None:intergenic |
| TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | 1.1:+80572440 | None:intergenic |
| TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | 1.1:-80573076 | None:intergenic |
| TTCCCAAAATCAATATGGAA+AGG | 0.576621 | 1.1:-80572226 | MS.gene93116:CDS |
| CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | 1.1:-80572369 | MS.gene93116:CDS |
| TGTTAATGATACCTATAATG+GGG | 0.582350 | 1.1:-80572273 | MS.gene93116:CDS |
| CTGAAAAGGGAGAGTGTGCA+AGG | 0.587535 | 1.1:+80572121 | None:intergenic |
| CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | 1.1:-80572365 | MS.gene93116:CDS |
| TAACATCAATATTCTTGTAG+GGG | 0.591713 | 1.1:+80572324 | None:intergenic |
| TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | 1.1:-80573036 | MS.gene93116:CDS |
| ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | 1.1:+80572493 | None:intergenic |
| CAAGAATATTGATGTTAATG+GGG | 0.607609 | 1.1:-80572318 | MS.gene93116:CDS |
| CTATTACAATGGAAATGCAA+TGG | 0.613734 | 1.1:-80572165 | MS.gene93116:CDS |
| GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | 1.1:-80572366 | MS.gene93116:CDS |
| TACCCTCCTCAGACTCCACA+TGG | 0.630866 | 1.1:+80572363 | None:intergenic |
| GATTTGCTGAACCTGAAACA+TGG | 0.641427 | 1.1:-80572898 | MS.gene93116:CDS |
| GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | 1.1:+80572441 | None:intergenic |
| TAGTAACTAGGATTCAAGGA+AGG | 0.647567 | 1.1:+80572536 | None:intergenic |
| GTTAATGATACCTATAATGG+GGG | 0.651079 | 1.1:-80572272 | MS.gene93116:CDS |
| TATACAAAGCTCGCACCATG+TGG | 0.663687 | 1.1:-80572378 | MS.gene93116:CDS |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | 1.1:-80572579 | MS.gene93116:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 1.1:-80572879 | MS.gene93116:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTAATGATACCTATAA+TGG | - | chr1.1:80572817-80572836 | MS.gene93116:CDS | 20.0% |
| !! | ACAAGAATATTGATGTTAAT+GGG | - | chr1.1:80572773-80572792 | MS.gene93116:CDS | 20.0% |
| !! | ATGTTAATGATACCTATAAT+GGG | - | chr1.1:80572818-80572837 | MS.gene93116:CDS | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | + | chr1.1:80572773-80572792 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | - | chr1.1:80572772-80572791 | MS.gene93116:CDS | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | + | chr1.1:80572772-80572791 | None:intergenic | 20.0% |
| !! | TTATCACTAATATTCATCAT+TGG | + | chr1.1:80572628-80572647 | None:intergenic | 20.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | - | chr1.1:80572391-80572410 | MS.gene93116:CDS | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | - | chr1.1:80572257-80572276 | MS.gene93116:CDS | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | + | chr1.1:80572697-80572716 | None:intergenic | 25.0% |
| ! | ATCATTAACATTAACCTGAT+TGG | + | chr1.1:80572809-80572828 | None:intergenic | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | - | chr1.1:80572484-80572503 | MS.gene93116:CDS | 25.0% |
| ! | CAACATGTATTTCAACTTAA+TGG | - | chr1.1:80573009-80573028 | MS.gene93116:CDS | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | - | chr1.1:80572774-80572793 | MS.gene93116:CDS | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | + | chr1.1:80572771-80572790 | None:intergenic | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | - | chr1.1:80572483-80572502 | MS.gene93116:CDS | 25.0% |
| ! | TGTTAATGATACCTATAATG+GGG | - | chr1.1:80572819-80572838 | MS.gene93116:CDS | 25.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | + | chr1.1:80572249-80572268 | None:intergenic | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | - | chr1.1:80572294-80572313 | MS.gene93116:CDS | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | - | chr1.1:80572299-80572318 | MS.gene93116:CDS | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | + | chr1.1:80572871-80572890 | None:intergenic | 25.0% |
| AACATCAACATCACAAAGAA+TGG | + | chr1.1:80572137-80572156 | None:intergenic | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | - | chr1.1:80572085-80572104 | MS.gene93116:CDS | 30.0% | |
| ATGAGATTGAAGTAGTAACT+AGG | + | chr1.1:80572571-80572590 | None:intergenic | 30.0% | |
| ATTAGTGATAAAAACCCCTT+AGG | - | chr1.1:80572637-80572656 | MS.gene93116:CDS | 30.0% | |
| CAAAATCAATATGGAAAGGA+AGG | - | chr1.1:80572870-80572889 | MS.gene93116:CDS | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | - | chr1.1:80572927-80572946 | MS.gene93116:CDS | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | + | chr1.1:80572925-80572944 | None:intergenic | 30.0% | |
| GTCAACATTTCAAAAGAGAA+AGG | - | chr1.1:80572081-80572100 | MS.gene93116:CDS | 30.0% | |
| GTTAATGATACCTATAATGG+GGG | - | chr1.1:80572820-80572839 | MS.gene93116:CDS | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | - | chr1.1:80572368-80572387 | MS.gene93116:CDS | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | + | chr1.1:80572625-80572644 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | + | chr1.1:80572286-80572305 | None:intergenic | 30.0% | |
| TTAGTGATAAAAACCCCTTA+GGG | - | chr1.1:80572638-80572657 | MS.gene93116:CDS | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | - | chr1.1:80572866-80572885 | MS.gene93116:CDS | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | + | chr1.1:80572385-80572404 | None:intergenic | 30.0% | |
| ! | AGATTTGAGAGATTCTGAAA+AGG | + | chr1.1:80572988-80573007 | None:intergenic | 30.0% |
| ! | GATATTATTTGCTAGCAAAC+TGG | - | chr1.1:80572426-80572445 | MS.gene93116:CDS | 30.0% |
| ! | GATTTGAGAGATTCTGAAAA+GGG | + | chr1.1:80572987-80573006 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | - | chr1.1:80573023-80573042 | MS.gene93116:CDS | 30.0% |
| !!! | CTTCCTTTCCATATTGATTT+TGG | + | chr1.1:80572872-80572891 | None:intergenic | 30.0% |
| AAATCCACGACCTACAAAAT+TGG | + | chr1.1:80572179-80572198 | None:intergenic | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | - | chr1.1:80572513-80572532 | MS.gene93116:CDS | 35.0% | |
| AATCCACGACCTACAAAATT+GGG | + | chr1.1:80572178-80572197 | None:intergenic | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | + | chr1.1:80572602-80572621 | None:intergenic | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | - | chr1.1:80572874-80572893 | MS.gene93116:CDS | 35.0% | |
| ATCTATGGAACTCATCCAAA+AGG | - | chr1.1:80572045-80572064 | MS.gene93116:CDS | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | - | chr1.1:80572396-80572415 | MS.gene93116:CDS | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | - | chr1.1:80573054-80573073 | MS.gene93116:CDS | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | - | chr1.1:80573058-80573077 | MS.gene93116:CDS | 35.0% | |
| GAAGTAGTAACTAGGATTCA+AGG | + | chr1.1:80572563-80572582 | None:intergenic | 35.0% | |
| TAGTAACTAGGATTCAAGGA+AGG | + | chr1.1:80572559-80572578 | None:intergenic | 35.0% | |
| TAGTTTCTCTTTACGCACTT+TGG | + | chr1.1:80572350-80572369 | None:intergenic | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | - | chr1.1:80572056-80572075 | MS.gene93116:CDS | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | - | chr1.1:80572916-80572935 | MS.gene93116:CDS | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | - | chr1.1:80572783-80572802 | MS.gene93116:CDS | 35.0% | |
| TTGATGTTAATGGGGCTAAT+TGG | - | chr1.1:80572782-80572801 | MS.gene93116:CDS | 35.0% | |
| ! | ATAAAAACCCCTTAGGGTTT+TGG | - | chr1.1:80572644-80572663 | MS.gene93116:CDS | 35.0% |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | + | chr1.1:80572220-80572239 | None:intergenic | 35.0% |
| ATGGCCTAAAGACAAAAGAG+AGG | - | chr1.1:80572213-80572232 | MS.gene93116:CDS | 40.0% | |
| TTGTCTTTAGGCCATGTTTC+AGG | + | chr1.1:80572208-80572227 | None:intergenic | 40.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | + | chr1.1:80572063-80572082 | None:intergenic | 40.0% |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | + | chr1.1:80572713-80572732 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | - | chr1.1:80572166-80572185 | MS.gene93116:CDS | 40.0% |
| ! | TACCTATAATGGGGGTTATC+AGG | - | chr1.1:80572828-80572847 | MS.gene93116:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | - | chr1.1:80572194-80572213 | MS.gene93116:CDS | 40.0% |
| AAGGAAGGATGGAGCTGAAA+AGG | - | chr1.1:80572885-80572904 | MS.gene93116:CDS | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | - | chr1.1:80572861-80572880 | MS.gene93116:CDS | 45.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | - | chr1.1:80572030-80572049 | MS.gene93116:CDS | 45.0% | |
| GTCCTGATAACCCCCATTAT+AGG | + | chr1.1:80572833-80572852 | None:intergenic | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | - | chr1.1:80572714-80572733 | MS.gene93116:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | + | chr1.1:80572655-80572674 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | + | chr1.1:80572656-80572675 | None:intergenic | 45.0% | |
| GAAGTGGCCAAAACCCTAAG+GGG | + | chr1.1:80572654-80572673 | None:intergenic | 50.0% | |
| GGTTATCAGGACCGATGCTT+CGG | - | chr1.1:80572841-80572860 | MS.gene93116:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | - | chr1.1:80572842-80572861 | MS.gene93116:CDS | 50.0% | |
| ! | CTGAAAAGGGAGAGTGTGCA+AGG | + | chr1.1:80572974-80572993 | None:intergenic | 50.0% |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | + | chr1.1:80572679-80572698 | None:intergenic | 50.0% |
| ! | GCTCCCAATTTTGTAGGTCG+TGG | - | chr1.1:80572172-80572191 | MS.gene93116:CDS | 50.0% |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | - | chr1.1:80572657-80572676 | MS.gene93116:CDS | 50.0% |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | + | chr1.1:80572855-80572874 | None:intergenic | 50.0% |
| CACCATGTGGAGTCTGAGGA+GGG | - | chr1.1:80572727-80572746 | MS.gene93116:CDS | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | + | chr1.1:80572732-80572751 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | - | chr1.1:80572792-80572811 | MS.gene93116:CDS | 55.0% | |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | + | chr1.1:80572670-80572689 | None:intergenic | 55.0% |
| ! | GGGAGAGTGTGCAAGGCAAT+AGG | + | chr1.1:80572967-80572986 | None:intergenic | 55.0% |
| !! | GGGTTTTGGCCACTTCAACC+GGG | - | chr1.1:80572658-80572677 | MS.gene93116:CDS | 55.0% |
| CTCGCACCATGTGGAGTCTG+AGG | - | chr1.1:80572723-80572742 | MS.gene93116:CDS | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | - | chr1.1:80572726-80572745 | MS.gene93116:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80572028 | 80573086 | 80572028 | ID=MS.gene93116 |
| chr1.1 | mRNA | 80572028 | 80573086 | 80572028 | ID=MS.gene93116.t1;Parent=MS.gene93116 |
| chr1.1 | exon | 80572028 | 80573086 | 80572028 | ID=MS.gene93116.t1.exon1;Parent=MS.gene93116.t1 |
| chr1.1 | CDS | 80572028 | 80573086 | 80572028 | ID=cds.MS.gene93116.t1;Parent=MS.gene93116.t1 |
| Gene Sequence |
| Protein sequence |
