Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93133.t1 | PNY07850.1 | 89.7 | 261 | 21 | 2 | 1 | 259 | 1 | 257 | 8.40E-88 | 333.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93133.t1 | Q9FMX2 | 69.0 | 232 | 42 | 5 | 33 | 257 | 40 | 248 | 6.3e-60 | 232.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93133.t1 | A0A2K3NXU1 | 89.7 | 261 | 21 | 2 | 1 | 259 | 1 | 257 | 6.0e-88 | 333.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene93133.t1 | TF | TCP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93133.t1 | MTR_1g114380 | 97.308 | 260 | 3 | 2 | 1 | 259 | 1 | 257 | 0.0 | 506 |
MS.gene93133.t1 | MTR_1g038650 | 61.111 | 252 | 53 | 7 | 17 | 257 | 16 | 233 | 2.31e-79 | 239 |
MS.gene93133.t1 | MTR_5g039600 | 65.217 | 115 | 28 | 3 | 8 | 114 | 39 | 149 | 9.60e-42 | 147 |
MS.gene93133.t1 | MTR_2g006150 | 74.737 | 95 | 21 | 1 | 26 | 117 | 121 | 215 | 4.36e-41 | 146 |
MS.gene93133.t1 | MTR_2g006150 | 74.737 | 95 | 21 | 1 | 26 | 117 | 121 | 215 | 6.13e-41 | 147 |
MS.gene93133.t1 | MTR_7g028160 | 56.800 | 125 | 40 | 3 | 1 | 118 | 12 | 129 | 9.91e-38 | 134 |
MS.gene93133.t1 | MTR_4g108370 | 75.309 | 81 | 15 | 1 | 26 | 101 | 86 | 166 | 2.81e-36 | 134 |
MS.gene93133.t1 | MTR_1g063870 | 73.418 | 79 | 17 | 2 | 19 | 94 | 34 | 111 | 1.00e-34 | 124 |
MS.gene93133.t1 | MTR_1g101810 | 62.626 | 99 | 31 | 2 | 10 | 106 | 40 | 134 | 1.36e-32 | 122 |
MS.gene93133.t1 | MTR_1g101810 | 62.626 | 99 | 31 | 2 | 10 | 106 | 70 | 164 | 3.00e-32 | 121 |
MS.gene93133.t1 | MTR_8g033070 | 70.130 | 77 | 23 | 0 | 28 | 104 | 76 | 152 | 1.67e-31 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93133.t1 | AT5G23280 | 64.961 | 254 | 56 | 9 | 12 | 257 | 20 | 248 | 2.56e-96 | 283 |
MS.gene93133.t1 | AT5G08330 | 55.351 | 271 | 75 | 8 | 1 | 259 | 1 | 237 | 5.93e-77 | 233 |
MS.gene93133.t1 | AT1G58100 | 77.907 | 86 | 19 | 0 | 33 | 118 | 61 | 146 | 6.32e-41 | 145 |
MS.gene93133.t1 | AT1G35560 | 74.444 | 90 | 23 | 0 | 29 | 118 | 52 | 141 | 2.68e-39 | 139 |
MS.gene93133.t1 | AT1G72010 | 78.571 | 84 | 17 | 1 | 26 | 109 | 58 | 140 | 2.79e-39 | 140 |
MS.gene93133.t1 | AT3G47620 | 76.829 | 82 | 14 | 1 | 25 | 101 | 105 | 186 | 1.88e-37 | 137 |
MS.gene93133.t1 | AT1G69690 | 75.949 | 79 | 14 | 1 | 28 | 101 | 43 | 121 | 7.91e-37 | 132 |
MS.gene93133.t1 | AT3G27010 | 75.342 | 73 | 18 | 0 | 21 | 93 | 67 | 139 | 2.22e-33 | 123 |
MS.gene93133.t1 | AT3G27010 | 75.342 | 73 | 18 | 0 | 21 | 93 | 67 | 139 | 2.22e-33 | 123 |
MS.gene93133.t1 | AT5G51910 | 65.517 | 87 | 30 | 0 | 18 | 104 | 43 | 129 | 5.51e-33 | 122 |
MS.gene93133.t1 | AT5G51910 | 65.517 | 87 | 30 | 0 | 18 | 104 | 43 | 129 | 5.51e-33 | 122 |
MS.gene93133.t1 | AT2G45680 | 62.366 | 93 | 28 | 1 | 27 | 119 | 70 | 155 | 5.02e-32 | 120 |
MS.gene93133.t1 | AT5G41030 | 66.176 | 68 | 23 | 0 | 28 | 95 | 64 | 131 | 9.07e-28 | 107 |
MS.gene93133.t1 | AT2G37000 | 76.271 | 59 | 14 | 0 | 33 | 91 | 44 | 102 | 7.67e-27 | 103 |
MS.gene93133.t1 | AT3G45150 | 42.742 | 124 | 47 | 4 | 21 | 122 | 8 | 129 | 6.92e-21 | 87.0 |
MS.gene93133.t1 | AT1G58100 | 54.651 | 86 | 15 | 1 | 33 | 118 | 61 | 122 | 1.41e-19 | 87.4 |
Find 80 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCAACACCGGCGGCTCTT+TGG | 0.182183 | 1.1:+80418747 | MS.gene93133:CDS |
AGGAGAAGGGAGAGAGTTAT+TGG | 0.218287 | 1.1:-80418597 | None:intergenic |
TTACCTGCACGGCCTGATTT+TGG | 0.227364 | 1.1:+80418773 | MS.gene93133:CDS |
GTCAACACCGGCGGCTCTTT+GGG | 0.248532 | 1.1:+80418748 | MS.gene93133:CDS |
CGGCTAGTTGTTGACGGTTT+GGG | 0.317306 | 1.1:-80418337 | None:intergenic |
TCTCCTACGCCGTTCATTCT+CGG | 0.325836 | 1.1:+80418653 | MS.gene93133:CDS |
AATTTGCTTGCTTCGTTGTC+TGG | 0.328042 | 1.1:+80418995 | MS.gene93133:CDS |
TTCCAGCTCACACGCGAATT+AGG | 0.343017 | 1.1:+80418449 | MS.gene93133:CDS |
AGCTTTGCTGCTGCTGCCGC+CGG | 0.352446 | 1.1:+80418806 | MS.gene93133:CDS |
ACGGCTAGTTGTTGACGGTT+TGG | 0.367652 | 1.1:-80418338 | None:intergenic |
TCTCTATCCGTTTCACTTCG+TGG | 0.380505 | 1.1:+80418572 | MS.gene93133:CDS |
TCTGGTGGACATGGAAATTC+TGG | 0.390225 | 1.1:+80419013 | MS.gene93133:CDS |
TGCTCCTCCGCCGGAAATGA+TGG | 0.394211 | 1.1:+80418829 | MS.gene93133:CDS |
ACAACAGCATCAACAAGTTA+TGG | 0.406472 | 1.1:+80418925 | MS.gene93133:CDS |
GGTACCGGTGGCGGCGATGA+TGG | 0.418821 | 1.1:-80418525 | None:intergenic |
AAAGACTGAACCATCATTTC+CGG | 0.426674 | 1.1:-80418839 | None:intergenic |
ACACGTGCGGCGCATATGAT+TGG | 0.431664 | 1.1:-80418425 | None:intergenic |
GTGAAGTGGAGGAAGGAGAA+GGG | 0.432577 | 1.1:-80418610 | None:intergenic |
CTCCAAATTTGACCAAAATC+AGG | 0.435338 | 1.1:-80418785 | None:intergenic |
CTCTTTGGGCTTTACCTGCA+CGG | 0.438680 | 1.1:+80418762 | MS.gene93133:CDS |
CGCCGGAGTTGTGCCGGTAC+CGG | 0.440402 | 1.1:-80418540 | None:intergenic |
TGCCGCCGGTGCTCCTCCGC+CGG | 0.444737 | 1.1:+80418820 | MS.gene93133:CDS |
AAAGATGATGCTCTTTCTGT+TGG | 0.447514 | 1.1:+80418719 | MS.gene93133:CDS |
CAACAGCATCAACAAGTTAT+GGG | 0.456904 | 1.1:+80418926 | MS.gene93133:CDS |
AGTGAAGTGGAGGAAGGAGA+AGG | 0.462868 | 1.1:-80418611 | None:intergenic |
ATCATCGCCGCCACCGGTAC+CGG | 0.463092 | 1.1:+80418527 | MS.gene93133:CDS |
TTTGTCTCAGCAGCAACATC+AGG | 0.466168 | 1.1:+80418859 | MS.gene93133:CDS |
ATATGATTGGCATACGAATA+CGG | 0.468808 | 1.1:-80418412 | None:intergenic |
AGAGTTGGGAATTATCTTCC+TGG | 0.477725 | 1.1:+80418965 | MS.gene93133:CDS |
AGTTGTGCCGGTACCGGTGG+CGG | 0.478006 | 1.1:-80418534 | None:intergenic |
GTTGTTGTTGTGTTTCCGTC+GGG | 0.482911 | 1.1:-80418290 | None:intergenic |
CACAGTAAAGTCGACGGCCG+TGG | 0.489495 | 1.1:+80418386 | MS.gene93133:CDS |
ACCGGTGGCGGCGATGATGG+AGG | 0.492286 | 1.1:-80418522 | None:intergenic |
TGGTCGAGTGAAGTGGAGGA+AGG | 0.494112 | 1.1:-80418617 | None:intergenic |
GACCTAATTCGCGTGTGAGC+TGG | 0.494851 | 1.1:-80418451 | None:intergenic |
CATTTCCGGCGGAGGAGCAC+CGG | 0.501079 | 1.1:-80418825 | None:intergenic |
TTACTGTGACGGTCTTTAGC+CGG | 0.502888 | 1.1:-80418371 | None:intergenic |
GCTTCGTTGTCTGGTGGACA+TGG | 0.503221 | 1.1:+80419004 | MS.gene93133:CDS |
CCCTCCATCATCGCCGCCAC+CGG | 0.503587 | 1.1:+80418521 | MS.gene93133:CDS |
GAAGCTTCAGCTGCTAGAGT+TGG | 0.504823 | 1.1:+80418950 | MS.gene93133:CDS |
AAGCTTCAGCTGCTAGAGTT+GGG | 0.504829 | 1.1:+80418951 | MS.gene93133:CDS |
TGATGGAGGGTTCAGCTTGA+CGG | 0.505105 | 1.1:-80418508 | None:intergenic |
CACCGGTACCGGCACAACTC+CGG | 0.512438 | 1.1:+80418538 | MS.gene93133:CDS |
TGACCAAAATCAGGCCGTGC+AGG | 0.513660 | 1.1:-80418776 | None:intergenic |
TAGGAGAGAGAAGCGGTTTG+TGG | 0.517147 | 1.1:-80418637 | None:intergenic |
TTGCTTGCTTCGTTGTCTGG+TGG | 0.525229 | 1.1:+80418998 | MS.gene93133:CDS |
TGAACCATCATTTCCGGCGG+AGG | 0.529418 | 1.1:-80418833 | None:intergenic |
CCATTCGATGGTTTGACCGT+CGG | 0.532798 | 1.1:-80418480 | None:intergenic |
GTTTCCGTCGGGGTTAGACA+TGG | 0.533278 | 1.1:-80418279 | None:intergenic |
CCGGTGGCGGCGATGATGGA+GGG | 0.534932 | 1.1:-80418521 | None:intergenic |
GTCAATGATTGAACCGTTCG+TGG | 0.543005 | 1.1:-80418315 | None:intergenic |
GGTTGTTGTTGTGTTTCCGT+CGG | 0.546317 | 1.1:-80418291 | None:intergenic |
ATTGGAGCCACGAAGTGAAA+CGG | 0.550877 | 1.1:-80418579 | None:intergenic |
TTCCGGCGGAGGAGCACCGG+CGG | 0.553371 | 1.1:-80418822 | None:intergenic |
GAAACTCGCCGGAGTTGTGC+CGG | 0.558752 | 1.1:-80418546 | None:intergenic |
CGGTTTGTGGTCGAGTGAAG+TGG | 0.560737 | 1.1:-80418624 | None:intergenic |
GCAAGCAAATTGAGATGACC+AGG | 0.567406 | 1.1:-80418983 | None:intergenic |
GCATACGAATACGGCGTCCA+CGG | 0.572506 | 1.1:-80418403 | None:intergenic |
TTGACGGAGGAGCCATTCGA+TGG | 0.578156 | 1.1:-80418492 | None:intergenic |
CGGAGTTGTGCCGGTACCGG+TGG | 0.579827 | 1.1:-80418537 | None:intergenic |
ACAACAACAACCACCACGAA+CGG | 0.583850 | 1.1:+80418302 | MS.gene93133:CDS |
GGTAAAGCCCAAAGAGCCGC+CGG | 0.587790 | 1.1:-80418755 | None:intergenic |
ATACGTTTACCGAGAATGAA+CGG | 0.599547 | 1.1:-80418662 | None:intergenic |
TGTTGGTTCTCTGTCAACAC+CGG | 0.600193 | 1.1:+80418736 | MS.gene93133:CDS |
GGCCGTCGACTTTACTGTGA+CGG | 0.604244 | 1.1:-80418382 | None:intergenic |
CCGACGGTCAAACCATCGAA+TGG | 0.640967 | 1.1:+80418480 | MS.gene93133:CDS |
TTTGTGGTCGAGTGAAGTGG+AGG | 0.647959 | 1.1:-80418621 | None:intergenic |
TTACCGAGAATGAACGGCGT+AGG | 0.649539 | 1.1:-80418656 | None:intergenic |
GATAGAGAAGAGAAACTCGC+CGG | 0.650384 | 1.1:-80418557 | None:intergenic |
TTGTTGTTGTGTTTCCGTCG+GGG | 0.653569 | 1.1:-80418289 | None:intergenic |
CTGTGACGGTCTTTAGCCGG+CGG | 0.655661 | 1.1:-80418368 | None:intergenic |
GACTGAACCATCATTTCCGG+CGG | 0.662606 | 1.1:-80418836 | None:intergenic |
GACCGTCACAGTAAAGTCGA+CGG | 0.670892 | 1.1:+80418380 | MS.gene93133:CDS |
AATGATTGAACCGTTCGTGG+TGG | 0.682160 | 1.1:-80418312 | None:intergenic |
TGTGAGCTGGAAGACACGTG+CGG | 0.686113 | 1.1:-80418438 | None:intergenic |
AAAACCATGTCTAACCCCGA+CGG | 0.687631 | 1.1:+80418275 | None:intergenic |
TGGAGGGTTCAGCTTGACGG+AGG | 0.697001 | 1.1:-80418505 | None:intergenic |
GAATTAGGTCACAAATCCGA+CGG | 0.701084 | 1.1:+80418464 | MS.gene93133:CDS |
TGGTTCTCTGTCAACACCGG+CGG | 0.706409 | 1.1:+80418739 | MS.gene93133:CDS |
AACGGCGTAGGAGAGAGAAG+CGG | 0.760443 | 1.1:-80418644 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATATGATTGGCATACGAATA+CGG | - | chr1.1:80418415-80418434 | None:intergenic | 30.0% | |
AAAGACTGAACCATCATTTC+CGG | - | chr1.1:80418842-80418861 | None:intergenic | 35.0% | |
AAAGATGATGCTCTTTCTGT+TGG | + | chr1.1:80418719-80418738 | MS.gene93133:CDS | 35.0% | |
ACAACAGCATCAACAAGTTA+TGG | + | chr1.1:80418925-80418944 | MS.gene93133:CDS | 35.0% | |
ATACGTTTACCGAGAATGAA+CGG | - | chr1.1:80418665-80418684 | None:intergenic | 35.0% | |
CAACAGCATCAACAAGTTAT+GGG | + | chr1.1:80418926-80418945 | MS.gene93133:CDS | 35.0% | |
CTCCAAATTTGACCAAAATC+AGG | - | chr1.1:80418788-80418807 | None:intergenic | 35.0% | |
AGAGTTGGGAATTATCTTCC+TGG | + | chr1.1:80418965-80418984 | MS.gene93133:CDS | 40.0% | |
GAATTAGGTCACAAATCCGA+CGG | + | chr1.1:80418464-80418483 | MS.gene93133:CDS | 40.0% | |
! | AATTTGCTTGCTTCGTTGTC+TGG | + | chr1.1:80418995-80419014 | MS.gene93133:CDS | 40.0% |
!! | GGCCTGATTTTGGTCAAATT+TGG | + | chr1.1:80418783-80418802 | MS.gene93133:CDS | 40.0% |
!! | TTTTGACGGCTAGTTGTTGA+CGG | - | chr1.1:80418346-80418365 | None:intergenic | 40.0% |
AAGCTTCAGCTGCTAGAGTT+GGG | + | chr1.1:80418951-80418970 | MS.gene93133:CDS | 45.0% | |
AATGATTGAACCGTTCGTGG+TGG | - | chr1.1:80418315-80418334 | None:intergenic | 45.0% | |
ACAACAACAACCACCACGAA+CGG | + | chr1.1:80418302-80418321 | MS.gene93133:CDS | 45.0% | |
AGGAGAAGGGAGAGAGTTAT+TGG | - | chr1.1:80418600-80418619 | None:intergenic | 45.0% | |
ATTGGAGCCACGAAGTGAAA+CGG | - | chr1.1:80418582-80418601 | None:intergenic | 45.0% | |
GATAGAGAAGAGAAACTCGC+CGG | - | chr1.1:80418560-80418579 | None:intergenic | 45.0% | |
GCAAGCAAATTGAGATGACC+AGG | - | chr1.1:80418986-80419005 | None:intergenic | 45.0% | |
GTCAATGATTGAACCGTTCG+TGG | - | chr1.1:80418318-80418337 | None:intergenic | 45.0% | |
TCTCTATCCGTTTCACTTCG+TGG | + | chr1.1:80418572-80418591 | MS.gene93133:CDS | 45.0% | |
TTACTGTGACGGTCTTTAGC+CGG | - | chr1.1:80418374-80418393 | None:intergenic | 45.0% | |
TTTGTCTCAGCAGCAACATC+AGG | + | chr1.1:80418859-80418878 | MS.gene93133:CDS | 45.0% | |
! | GGTTGTTGTTGTGTTTCCGT+CGG | - | chr1.1:80418294-80418313 | None:intergenic | 45.0% |
! | GTTGTTGTTGTGTTTCCGTC+GGG | - | chr1.1:80418293-80418312 | None:intergenic | 45.0% |
! | TCTGGTGGACATGGAAATTC+TGG | + | chr1.1:80419013-80419032 | MS.gene93133:CDS | 45.0% |
! | TTGTTGTTGTGTTTCCGTCG+GGG | - | chr1.1:80418292-80418311 | None:intergenic | 45.0% |
!! | TGTTGGTTCTCTGTCAACAC+CGG | + | chr1.1:80418736-80418755 | MS.gene93133:CDS | 45.0% |
!!! | TTTAGCCGGCGGTTTTTTGA+CGG | - | chr1.1:80418360-80418379 | None:intergenic | 45.0% |
ACTAGCCGTCAAAAAACCGC+CGG | + | chr1.1:80418352-80418371 | MS.gene93133:CDS | 50.0% | |
AGTGAAGTGGAGGAAGGAGA+AGG | - | chr1.1:80418614-80418633 | None:intergenic | 50.0% | |
CCATTCGATGGTTTGACCGT+CGG | - | chr1.1:80418483-80418502 | None:intergenic | 50.0% | |
CTCTTTGGGCTTTACCTGCA+CGG | + | chr1.1:80418762-80418781 | MS.gene93133:CDS | 50.0% | |
GAAGCTTCAGCTGCTAGAGT+TGG | + | chr1.1:80418950-80418969 | MS.gene93133:CDS | 50.0% | |
GACCGTCACAGTAAAGTCGA+CGG | + | chr1.1:80418380-80418399 | MS.gene93133:CDS | 50.0% | |
GACTGAACCATCATTTCCGG+CGG | - | chr1.1:80418839-80418858 | None:intergenic | 50.0% | |
GTGAAGTGGAGGAAGGAGAA+GGG | - | chr1.1:80418613-80418632 | None:intergenic | 50.0% | |
TAGGAGAGAGAAGCGGTTTG+TGG | - | chr1.1:80418640-80418659 | None:intergenic | 50.0% | |
TCTCCTACGCCGTTCATTCT+CGG | + | chr1.1:80418653-80418672 | MS.gene93133:CDS | 50.0% | |
TGATGGAGGGTTCAGCTTGA+CGG | - | chr1.1:80418511-80418530 | None:intergenic | 50.0% | |
TTACCGAGAATGAACGGCGT+AGG | - | chr1.1:80418659-80418678 | None:intergenic | 50.0% | |
TTCCAGCTCACACGCGAATT+AGG | + | chr1.1:80418449-80418468 | MS.gene93133:CDS | 50.0% | |
TTGCTTGCTTCGTTGTCTGG+TGG | + | chr1.1:80418998-80419017 | MS.gene93133:CDS | 50.0% | |
TTTGTGGTCGAGTGAAGTGG+AGG | - | chr1.1:80418624-80418643 | None:intergenic | 50.0% | |
! | ACGGCTAGTTGTTGACGGTT+TGG | - | chr1.1:80418341-80418360 | None:intergenic | 50.0% |
! | CGGCTAGTTGTTGACGGTTT+GGG | - | chr1.1:80418340-80418359 | None:intergenic | 50.0% |
! | TTACCTGCACGGCCTGATTT+TGG | + | chr1.1:80418773-80418792 | MS.gene93133:CDS | 50.0% |
AACGGCGTAGGAGAGAGAAG+CGG | - | chr1.1:80418647-80418666 | None:intergenic | 55.0% | |
ACACGTGCGGCGCATATGAT+TGG | - | chr1.1:80418428-80418447 | None:intergenic | 55.0% | |
CCGACGGTCAAACCATCGAA+TGG | + | chr1.1:80418480-80418499 | MS.gene93133:CDS | 55.0% | |
CGGTTTGTGGTCGAGTGAAG+TGG | - | chr1.1:80418627-80418646 | None:intergenic | 55.0% | |
GACCTAATTCGCGTGTGAGC+TGG | - | chr1.1:80418454-80418473 | None:intergenic | 55.0% | |
GCATACGAATACGGCGTCCA+CGG | - | chr1.1:80418406-80418425 | None:intergenic | 55.0% | |
TGAACCATCATTTCCGGCGG+AGG | - | chr1.1:80418836-80418855 | None:intergenic | 55.0% | |
TGACCAAAATCAGGCCGTGC+AGG | - | chr1.1:80418779-80418798 | None:intergenic | 55.0% | |
TGGTCGAGTGAAGTGGAGGA+AGG | - | chr1.1:80418620-80418639 | None:intergenic | 55.0% | |
TGGTTCTCTGTCAACACCGG+CGG | + | chr1.1:80418739-80418758 | MS.gene93133:CDS | 55.0% | |
TGTGAGCTGGAAGACACGTG+CGG | - | chr1.1:80418441-80418460 | None:intergenic | 55.0% | |
TTGACGGAGGAGCCATTCGA+TGG | - | chr1.1:80418495-80418514 | None:intergenic | 55.0% | |
! | GCTTCGTTGTCTGGTGGACA+TGG | + | chr1.1:80419004-80419023 | MS.gene93133:CDS | 55.0% |
!! | GGCCGTCGACTTTACTGTGA+CGG | - | chr1.1:80418385-80418404 | None:intergenic | 55.0% |
CACAGTAAAGTCGACGGCCG+TGG | + | chr1.1:80418386-80418405 | MS.gene93133:CDS | 60.0% | |
CTGTGACGGTCTTTAGCCGG+CGG | - | chr1.1:80418371-80418390 | None:intergenic | 60.0% | |
GAAACTCGCCGGAGTTGTGC+CGG | - | chr1.1:80418549-80418568 | None:intergenic | 60.0% | |
GGTAAAGCCCAAAGAGCCGC+CGG | - | chr1.1:80418758-80418777 | None:intergenic | 60.0% | |
GTCAACACCGGCGGCTCTTT+GGG | + | chr1.1:80418748-80418767 | MS.gene93133:CDS | 60.0% | |
TGCTCCTCCGCCGGAAATGA+TGG | + | chr1.1:80418829-80418848 | MS.gene93133:CDS | 60.0% | |
TGGAGGGTTCAGCTTGACGG+AGG | - | chr1.1:80418508-80418527 | None:intergenic | 60.0% | |
TGTCAACACCGGCGGCTCTT+TGG | + | chr1.1:80418747-80418766 | MS.gene93133:CDS | 60.0% | |
AGCTTTGCTGCTGCTGCCGC+CGG | + | chr1.1:80418806-80418825 | MS.gene93133:CDS | 65.0% | |
ATCATCGCCGCCACCGGTAC+CGG | + | chr1.1:80418527-80418546 | MS.gene93133:CDS | 65.0% | |
! | CATTTCCGGCGGAGGAGCAC+CGG | - | chr1.1:80418828-80418847 | None:intergenic | 65.0% |
!! | AGTTGTGCCGGTACCGGTGG+CGG | - | chr1.1:80418537-80418556 | None:intergenic | 65.0% |
!! | CACCGGTACCGGCACAACTC+CGG | + | chr1.1:80418538-80418557 | MS.gene93133:CDS | 65.0% |
CCCTCCATCATCGCCGCCAC+CGG | + | chr1.1:80418521-80418540 | MS.gene93133:CDS | 70.0% | |
! | ACCGGTGGCGGCGATGATGG+AGG | - | chr1.1:80418525-80418544 | None:intergenic | 70.0% |
! | CGCCGGAGTTGTGCCGGTAC+CGG | - | chr1.1:80418543-80418562 | None:intergenic | 70.0% |
! | CGGAGTTGTGCCGGTACCGG+TGG | - | chr1.1:80418540-80418559 | None:intergenic | 70.0% |
!! | CCGGTGGCGGCGATGATGGA+GGG | - | chr1.1:80418524-80418543 | None:intergenic | 70.0% |
!! | GGTACCGGTGGCGGCGATGA+TGG | - | chr1.1:80418528-80418547 | None:intergenic | 70.0% |
!! | TTCCGGCGGAGGAGCACCGG+CGG | - | chr1.1:80418825-80418844 | None:intergenic | 75.0% |
! | TGCCGCCGGTGCTCCTCCGC+CGG | + | chr1.1:80418820-80418839 | MS.gene93133:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 80418281 | 80419060 | 80418281 | ID=MS.gene93133 |
chr1.1 | mRNA | 80418281 | 80419060 | 80418281 | ID=MS.gene93133.t1;Parent=MS.gene93133 |
chr1.1 | exon | 80418281 | 80419060 | 80418281 | ID=MS.gene93133.t1.exon1;Parent=MS.gene93133.t1 |
chr1.1 | CDS | 80418281 | 80419060 | 80418281 | ID=cds.MS.gene93133.t1;Parent=MS.gene93133.t1 |
Gene Sequence |
Protein sequence |