AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93348

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93348.t1 MTR_3g435680 86.567 402 37 2 36 426 1 396 0.0 702
MS.gene93348.t1 MTR_3g435590 54.545 517 96 10 1 426 1 469 3.22e-173 493
MS.gene93348.t1 MTR_3g029590 61.823 406 80 10 40 374 93 494 1.67e-138 414
MS.gene93348.t1 MTR_3g029590 41.045 134 50 4 321 425 548 681 5.56e-18 87.0
MS.gene93348.t1 MTR_7g092070 48.259 402 139 10 40 374 95 494 1.67e-105 328
MS.gene93348.t1 MTR_7g092070 63.265 49 18 0 377 425 627 675 3.12e-13 72.0
MS.gene93348.t1 MTR_1g050438 42.748 393 156 9 40 369 64 450 4.24e-92 290
MS.gene93348.t1 MTR_0728s0020 42.748 393 156 9 40 369 80 466 9.41e-92 290
MS.gene93348.t1 MTR_5g082830 45.485 299 109 9 68 345 133 398 4.02e-73 242
MS.gene93348.t1 MTR_5g071070 44.706 255 108 6 144 365 115 369 1.46e-67 226
MS.gene93348.t1 MTR_5g071070 44.706 255 108 6 144 365 197 451 7.07e-67 226
MS.gene93348.t1 MTR_1g075890 66.187 139 45 1 154 290 206 344 8.38e-64 217
MS.gene93348.t1 MTR_3g070880 37.537 341 135 9 40 360 58 340 2.32e-63 213
MS.gene93348.t1 MTR_8g102100 63.559 118 43 0 171 288 77 194 1.15e-49 173
MS.gene93348.t1 MTR_6g090380 68.224 107 34 0 171 277 99 205 2.34e-48 169
MS.gene93348.t1 MTR_3g464260 32.921 404 164 14 98 426 118 489 2.52e-47 170
MS.gene93348.t1 MTR_3g103960 52.113 142 60 4 170 309 48 183 1.70e-45 159
MS.gene93348.t1 MTR_2g090605 60.360 111 44 0 175 285 77 187 1.31e-43 157
MS.gene93348.t1 MTR_4g078660 58.879 107 44 0 171 277 56 162 2.13e-42 152
MS.gene93348.t1 MTR_3g464270 44.828 174 85 3 174 346 8 171 7.91e-42 151
MS.gene93348.t1 MTR_3g464290 55.208 96 40 2 156 248 79 174 3.58e-30 122
MS.gene93348.t1 MTR_3g464280 43.704 135 40 2 154 286 165 265 3.50e-28 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93348.t1 AT2G41900 50.862 348 119 10 40 345 96 433 2.91e-93 296
MS.gene93348.t1 AT5G12850 48.580 352 132 10 40 345 89 437 2.96e-86 277
MS.gene93348.t1 AT5G58620 54.167 216 78 6 154 353 186 396 2.58e-70 233
MS.gene93348.t1 AT2G40140 42.647 272 105 5 68 328 137 368 8.36e-65 218
MS.gene93348.t1 AT2G40140 42.647 272 105 5 68 328 137 368 8.36e-65 218
MS.gene93348.t1 AT3G55980 41.796 323 152 12 40 342 78 384 2.84e-64 216
MS.gene93348.t1 AT3G55980 41.796 323 152 12 40 342 145 451 1.26e-63 216
MS.gene93348.t1 AT2G25900 66.355 107 36 0 171 277 86 192 1.38e-49 171
MS.gene93348.t1 AT2G25900 66.355 107 36 0 171 277 86 192 1.38e-49 171
MS.gene93348.t1 AT4G29190 56.061 132 57 1 157 287 60 191 1.38e-46 164
MS.gene93348.t1 AT1G03790 52.174 161 71 3 134 290 43 201 1.63e-46 165
MS.gene93348.t1 AT2G19810 63.551 107 39 0 171 277 74 180 1.87e-45 161
MS.gene93348.t1 AT5G07500 57.759 116 49 0 162 277 39 154 4.08e-45 157
MS.gene93348.t1 AT5G44260 58.871 124 48 2 155 277 42 163 7.68e-43 155

Find 104 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGTATTAATACTTTAA+AGG 0.191112 3.2:-26903619 MS.gene93348:CDS
CTGTTAACTCCTGGTCTAAA+TGG 0.200828 3.2:-26902630 MS.gene93348:CDS
CCTTTATCATCTGCTGAAAA+TGG 0.235939 3.2:-26903372 MS.gene93348:CDS
TGGCCAGCTCTTCACTTTCC+AGG 0.289536 3.2:-26902751 MS.gene93348:CDS
TTCTCATAAGGATGGTAAAA+AGG 0.298159 3.2:+26903162 None:intergenic
TCTAAATGGGGTTCCAATAC+TGG 0.304870 3.2:-26902616 MS.gene93348:CDS
TCTTGGAACATATTTCTTCC+TGG 0.335210 3.2:+26902733 None:intergenic
ATCAAAGTCATTTCCGTTAA+CGG 0.344707 3.2:+26902579 None:intergenic
CATTTAGACCAGGAGTTAAC+AGG 0.344738 3.2:+26902631 None:intergenic
CACTGAAATGGCACCAGGAC+GGG 0.356573 3.2:+26902660 None:intergenic
GATCCAGTGGACACATATAT+TGG 0.363755 3.2:+26902922 None:intergenic
TATCTTAGTTGAGAATAGAT+TGG 0.376314 3.2:+26902491 None:intergenic
CCGTTTGCATATGGAGATAA+AGG 0.378114 3.2:+26902796 None:intergenic
GTGAAGAGCCTGATCTATCT+TGG 0.390741 3.2:-26902516 MS.gene93348:CDS
CCAATACTGGAAAACTTGAT+TGG 0.395651 3.2:-26902603 MS.gene93348:CDS
TGTTAACTCCTGGTCTAAAT+GGG 0.401435 3.2:-26902629 MS.gene93348:CDS
AGGAGCAGATGCAGCTGATC+GGG 0.402058 3.2:+26902885 None:intergenic
TCATCTTCATCTGCGGTAGA+AGG 0.405205 3.2:-26903711 MS.gene93348:CDS
GTAAATGCTGCTGATGCTGC+TGG 0.405634 3.2:-26903570 MS.gene93348:CDS
TTCACAATTTCGAGCTTATG+AGG 0.414701 3.2:+26903489 None:intergenic
AGAATGGTGCGATACCGATC+TGG 0.414981 3.2:+26903012 None:intergenic
AGCTGTAGGTGAACTTTCTA+AGG 0.419982 3.2:+26903124 None:intergenic
GGAGAGATGCCGTTTGCATA+TGG 0.429891 3.2:+26902787 None:intergenic
AAACTTGATTGGTCCGTTAA+CGG 0.434602 3.2:-26902592 MS.gene93348:CDS
ATTGTGAAAACAAGTCTTGA+AGG 0.440368 3.2:-26903474 MS.gene93348:CDS
GCAGCCATGTCCATGACATT+AGG 0.442851 3.2:+26902865 None:intergenic
TCTACACTAGGAAGTGCAAT+TGG 0.451987 3.2:+26903276 None:intergenic
CTCCTTCGAGCATTCTCATA+AGG 0.454231 3.2:+26903150 None:intergenic
ACTTTAAAGGTTACACCGTC+AGG 0.455897 3.2:-26903606 MS.gene93348:CDS
GGAGATAAAGGCAGTGCAAA+AGG 0.462149 3.2:+26902808 None:intergenic
ACAGCTGTGTCGGTAAACTT+TGG 0.463128 3.2:+26903327 None:intergenic
AACAGGTCGGCTCACTGAAA+TGG 0.465830 3.2:+26902648 None:intergenic
ATCGTGCATACTCTCATGAT+TGG 0.468172 3.2:-26903194 MS.gene93348:CDS
TGTTTCTCACAGCCCCGTCC+TGG 0.471928 3.2:-26902673 MS.gene93348:CDS
GAAAACAAGTCTTGAAGGAC+TGG 0.473587 3.2:-26903469 MS.gene93348:CDS
GCTGGCCAAGCATTATTTGA+AGG 0.478194 3.2:+26902766 None:intergenic
AGTACCATCTTTGCAGAGAA+TGG 0.480755 3.2:+26902996 None:intergenic
GATGAAGATGACGAAATTGA+AGG 0.481890 3.2:+26903723 None:intergenic
AATATGTTCCAAGACATTCA+TGG 0.483668 3.2:-26902724 MS.gene93348:CDS
CGCACCATTCTCTGCAAAGA+TGG 0.486710 3.2:-26903000 MS.gene93348:CDS
TCAATGGTGGATGCTTCCTA+TGG 0.491814 3.2:-26903639 MS.gene93348:CDS
CTTCCTGGAAAGTGAAGAGC+TGG 0.497956 3.2:+26902748 None:intergenic
ACTGAAATGGCACCAGGACG+GGG 0.501239 3.2:+26902661 None:intergenic
CTCATGGACTATTCGAGACC+TGG 0.504397 3.2:-26903041 MS.gene93348:CDS
TAAAGTATTAATACTCCCAT+AGG 0.504776 3.2:+26903623 None:intergenic
GATGCAGCTGATCGGGGTAA+AGG 0.505671 3.2:+26902892 None:intergenic
TGAAGAGCCTGATCTATCTT+GGG 0.506674 3.2:-26902515 MS.gene93348:CDS
TTGGTAGCAAACCACGATAA+AGG 0.506935 3.2:+26902833 None:intergenic
ATACCGATCTGGGTGTAGCC+AGG 0.517913 3.2:+26903023 None:intergenic
GATAATTGTGAATTTGCTCA+TGG 0.522724 3.2:-26903057 MS.gene93348:CDS
GATTGGACCCAAGATAGATC+AGG 0.523337 3.2:+26902508 None:intergenic
GCAGCATTTACACCAGCCTC+TGG 0.529557 3.2:+26903582 None:intergenic
TTTGGAGCCACAGGAGAGGA+TGG 0.530352 3.2:+26903345 None:intergenic
CCTTTATCTCCATATGCAAA+CGG 0.530866 3.2:-26902796 MS.gene93348:CDS
CGGCTCACTGAAATGGCACC+AGG 0.533049 3.2:+26902655 None:intergenic
AAAGGCAGTGCAAAAGGAGT+TGG 0.533658 3.2:+26902814 None:intergenic
CGTCCAATATATGTGTCCAC+TGG 0.540039 3.2:-26902925 MS.gene93348:CDS
GCTGCTGACCATGAATGTCT+TGG 0.541101 3.2:+26902716 None:intergenic
TCGGTAAACTTTGGAGCCAC+AGG 0.542025 3.2:+26903336 None:intergenic
TCAGTTAATTGAAAGATGTA+CGG 0.542243 3.2:-26903768 None:intergenic
TAGGAGCAGATGCAGCTGAT+CGG 0.547990 3.2:+26902884 None:intergenic
TCTCTCCTTCAAATAATGCT+TGG 0.548783 3.2:-26902771 MS.gene93348:CDS
GATAAAGGAGCAGCTGAATG+AGG 0.554070 3.2:+26903387 None:intergenic
GAATGGTGCGATACCGATCT+GGG 0.555264 3.2:+26903013 None:intergenic
TGTCTGTATAGCTGATTCAA+TGG 0.556347 3.2:-26903655 MS.gene93348:CDS
ACACCGTCAGGTCCAGAGGC+TGG 0.557164 3.2:-26903594 MS.gene93348:CDS
AGATATACCTCGTTTGAGCA+TGG 0.563226 3.2:-26902547 MS.gene93348:CDS
CAATGGTGGATGCTTCCTAT+GGG 0.563814 3.2:-26903638 MS.gene93348:CDS
TGAGCCGACCTGTTAACTCC+TGG 0.570712 3.2:-26902639 MS.gene93348:CDS
TCACTGAAATGGCACCAGGA+CGG 0.575540 3.2:+26902659 None:intergenic
ATCAATTGTGTGGATGCTGA+TGG 0.582815 3.2:-26903540 MS.gene93348:CDS
AGGGCATGGCACACAGCTGT+AGG 0.585274 3.2:+26903110 None:intergenic
TTCGAGCATTCTCATAAGGA+TGG 0.587046 3.2:+26903154 None:intergenic
GGATGCTGATGGAAACCGTC+CGG 0.589068 3.2:-26903529 MS.gene93348:CDS
TGCATCTGCTCCTAATGTCA+TGG 0.589356 3.2:-26902875 MS.gene93348:CDS
TGGTACTAGTTGTGACCGAA+AGG 0.594642 3.2:-26902980 MS.gene93348:CDS
TGTAGAATTAACAGCTGTGT+CGG 0.595082 3.2:+26903317 None:intergenic
GGAACAACATTAACATCCAC+CGG 0.597701 3.2:+26903510 None:intergenic
TGCTCCTAATGTCATGGACA+TGG 0.600640 3.2:-26902869 MS.gene93348:CDS
CTTGATGAATTAACAGATAG+CGG 0.605690 3.2:+26903411 None:intergenic
ATTGGAACCCCATTTAGACC+AGG 0.611618 3.2:+26902621 None:intergenic
AGACCTGGCTACACCCAGAT+CGG 0.613127 3.2:-26903026 MS.gene93348:CDS
TACATGCTGCTTTCTACACT+AGG 0.613651 3.2:+26903264 None:intergenic
CAACATTAACATCCACCGGA+CGG 0.617114 3.2:+26903514 None:intergenic
GGTTACACCGTCAGGTCCAG+AGG 0.620071 3.2:-26903598 MS.gene93348:CDS
ACACCAGCCTCTGGACCTGA+CGG 0.620211 3.2:+26903591 None:intergenic
TCGTTTGAGCATGGAAACAA+TGG 0.622299 3.2:-26902538 MS.gene93348:CDS
TGGATCTCCATCCTCTCCTG+TGG 0.628993 3.2:-26903352 MS.gene93348:CDS
AATTTCGTCATCTTCATCTG+CGG 0.629046 3.2:-26903718 MS.gene93348:CDS
TAAAGGAACAGCAGATCCAG+TGG 0.630564 3.2:+26902909 None:intergenic
AGTATGCACGATGACAAAGA+AGG 0.634741 3.2:+26903205 None:intergenic
CTGTATAGCTGATTCAATGG+TGG 0.635429 3.2:-26903652 MS.gene93348:CDS
TGCTGATGGAAACCGTCCGG+TGG 0.644021 3.2:-26903526 MS.gene93348:CDS
GCTGCTACGAACCTTTATCG+TGG 0.651582 3.2:-26902844 MS.gene93348:CDS
ATCCTTATGAGAATGCTCGA+AGG 0.652618 3.2:-26903152 MS.gene93348:CDS
GTTAATTGAAAGATGTACGG+TGG 0.654833 3.2:-26903765 None:intergenic
GGAGCAGATGCAGCTGATCG+GGG 0.658028 3.2:+26902886 None:intergenic
AAACTTTGGAGCCACAGGAG+AGG 0.663839 3.2:+26903341 None:intergenic
GTTAACTCCTGGTCTAAATG+GGG 0.665213 3.2:-26902628 MS.gene93348:CDS
ATTGTTTCCATGCTCAAACG+AGG 0.673909 3.2:+26902540 None:intergenic
GAACAATCGATATCAGCACC+AGG 0.675991 3.2:+26903438 None:intergenic
TGGCGCTGATATCAATTGTG+TGG 0.679251 3.2:-26903550 MS.gene93348:CDS
ATACATGCGAAATTCATCTG+TGG 0.700612 3.2:+26903239 None:intergenic
TAGACCAGGAGTTAACAGGT+CGG 0.724329 3.2:+26902635 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGTATTAATACTCCCAT+AGG + chr3.2:26902628-26902647 None:intergenic 25.0%
!!! TGGGAGTATTAATACTTTAA+AGG - chr3.2:26902629-26902648 MS.gene93348:CDS 25.0%
AATATGTTCCAAGACATTCA+TGG - chr3.2:26903524-26903543 MS.gene93348:CDS 30.0%
ATCAAAGTCATTTCCGTTAA+CGG + chr3.2:26903672-26903691 None:intergenic 30.0%
ATTGTGAAAACAAGTCTTGA+AGG - chr3.2:26902774-26902793 MS.gene93348:CDS 30.0%
CTTGATGAATTAACAGATAG+CGG + chr3.2:26902840-26902859 None:intergenic 30.0%
TTCTCATAAGGATGGTAAAA+AGG + chr3.2:26903089-26903108 None:intergenic 30.0%
! GATAATTGTGAATTTGCTCA+TGG - chr3.2:26903191-26903210 MS.gene93348:CDS 30.0%
!! ATGCCCTGATTTTAAAAAAG+GGG - chr3.2:26903154-26903173 MS.gene93348:CDS 30.0%
!! CATGCCCTGATTTTAAAAAA+GGG - chr3.2:26903153-26903172 MS.gene93348:CDS 30.0%
!!! AGTCCCCTTTTTTAAAATCA+GGG + chr3.2:26903160-26903179 None:intergenic 30.0%
!!! GAAGGAGATTTTGATTTGTT+AGG + chr3.2:26902510-26902529 None:intergenic 30.0%
AATTTCGTCATCTTCATCTG+CGG - chr3.2:26902530-26902549 MS.gene93348:CDS 35.0%
ATACATGCGAAATTCATCTG+TGG + chr3.2:26903012-26903031 None:intergenic 35.0%
CCAATACTGGAAAACTTGAT+TGG - chr3.2:26903645-26903664 MS.gene93348:CDS 35.0%
CCTTTATCATCTGCTGAAAA+TGG - chr3.2:26902876-26902895 MS.gene93348:CDS 35.0%
CCTTTATCTCCATATGCAAA+CGG - chr3.2:26903452-26903471 MS.gene93348:CDS 35.0%
GATGAAGATGACGAAATTGA+AGG + chr3.2:26902528-26902547 None:intergenic 35.0%
TCTCTCCTTCAAATAATGCT+TGG - chr3.2:26903477-26903496 MS.gene93348:CDS 35.0%
TCTTGGAACATATTTCTTCC+TGG + chr3.2:26903518-26903537 None:intergenic 35.0%
TGTAGAATTAACAGCTGTGT+CGG + chr3.2:26902934-26902953 None:intergenic 35.0%
TGTTAACTCCTGGTCTAAAT+GGG - chr3.2:26903619-26903638 MS.gene93348:CDS 35.0%
TTCACAATTTCGAGCTTATG+AGG + chr3.2:26902762-26902781 None:intergenic 35.0%
! AAACTTGATTGGTCCGTTAA+CGG - chr3.2:26903656-26903675 MS.gene93348:CDS 35.0%
! CCAATCAAGTTTTCCAGTAT+TGG + chr3.2:26903648-26903667 None:intergenic 35.0%
! CCATTTTCAGCAGATGATAA+AGG + chr3.2:26902879-26902898 None:intergenic 35.0%
! TGTCTGTATAGCTGATTCAA+TGG - chr3.2:26902593-26902612 MS.gene93348:CDS 35.0%
!! CCATGCCCTGATTTTAAAAA+AGG - chr3.2:26903152-26903171 MS.gene93348:CDS 35.0%
!!! CAGTCCCCTTTTTTAAAATC+AGG + chr3.2:26903161-26903180 None:intergenic 35.0%
!!! CCTTTTTTAAAATCAGGGCA+TGG + chr3.2:26903155-26903174 None:intergenic 35.0%
AGATATACCTCGTTTGAGCA+TGG - chr3.2:26903701-26903720 MS.gene93348:CDS 40.0%
AGCTGTAGGTGAACTTTCTA+AGG + chr3.2:26903127-26903146 None:intergenic 40.0%
AGGATGGTAAAAAGGACACT+CGG + chr3.2:26903081-26903100 None:intergenic 40.0%
AGTACCATCTTTGCAGAGAA+TGG + chr3.2:26903255-26903274 None:intergenic 40.0%
AGTATGCACGATGACAAAGA+AGG + chr3.2:26903046-26903065 None:intergenic 40.0%
ATCAATTGTGTGGATGCTGA+TGG - chr3.2:26902708-26902727 MS.gene93348:CDS 40.0%
ATCCTTATGAGAATGCTCGA+AGG - chr3.2:26903096-26903115 MS.gene93348:CDS 40.0%
ATCGTGCATACTCTCATGAT+TGG - chr3.2:26903054-26903073 MS.gene93348:CDS 40.0%
ATTGTTTCCATGCTCAAACG+AGG + chr3.2:26903711-26903730 None:intergenic 40.0%
CATTTAGACCAGGAGTTAAC+AGG + chr3.2:26903620-26903639 None:intergenic 40.0%
CCGTTTGCATATGGAGATAA+AGG + chr3.2:26903455-26903474 None:intergenic 40.0%
CTGTTAACTCCTGGTCTAAA+TGG - chr3.2:26903618-26903637 MS.gene93348:CDS 40.0%
GAAAACAAGTCTTGAAGGAC+TGG - chr3.2:26902779-26902798 MS.gene93348:CDS 40.0%
GATCCAGTGGACACATATAT+TGG + chr3.2:26903329-26903348 None:intergenic 40.0%
GGAACAACATTAACATCCAC+CGG + chr3.2:26902741-26902760 None:intergenic 40.0%
GTTAACTCCTGGTCTAAATG+GGG - chr3.2:26903620-26903639 MS.gene93348:CDS 40.0%
TCGTTTGAGCATGGAAACAA+TGG - chr3.2:26903710-26903729 MS.gene93348:CDS 40.0%
TCTAAATGGGGTTCCAATAC+TGG - chr3.2:26903632-26903651 MS.gene93348:CDS 40.0%
TGAAGAGCCTGATCTATCTT+GGG - chr3.2:26903733-26903752 MS.gene93348:CDS 40.0%
TTCGAGCATTCTCATAAGGA+TGG + chr3.2:26903097-26903116 None:intergenic 40.0%
! ACTTTAAAGGTTACACCGTC+AGG - chr3.2:26902642-26902661 MS.gene93348:CDS 40.0%
! CTGTATAGCTGATTCAATGG+TGG - chr3.2:26902596-26902615 MS.gene93348:CDS 40.0%
! GTGCAAAAAAGCACACCTTT+CGG + chr3.2:26903286-26903305 None:intergenic 40.0%
! TCTACACTAGGAAGTGCAAT+TGG + chr3.2:26902975-26902994 None:intergenic 40.0%
! TTGGTAGCAAACCACGATAA+AGG + chr3.2:26903418-26903437 None:intergenic 40.0%
!! TACATGCTGCTTTCTACACT+AGG + chr3.2:26902987-26903006 None:intergenic 40.0%
AAAGGCAGTGCAAAAGGAGT+TGG + chr3.2:26903437-26903456 None:intergenic 45.0%
ATTGGAACCCCATTTAGACC+AGG + chr3.2:26903630-26903649 None:intergenic 45.0%
CAACATTAACATCCACCGGA+CGG + chr3.2:26902737-26902756 None:intergenic 45.0%
CGTCCAATATATGTGTCCAC+TGG - chr3.2:26903323-26903342 MS.gene93348:CDS 45.0%
CTCCTTCGAGCATTCTCATA+AGG + chr3.2:26903101-26903120 None:intergenic 45.0%
GAACAATCGATATCAGCACC+AGG + chr3.2:26902813-26902832 None:intergenic 45.0%
GATAAAGGAGCAGCTGAATG+AGG + chr3.2:26902864-26902883 None:intergenic 45.0%
GATTGGACCCAAGATAGATC+AGG + chr3.2:26903743-26903762 None:intergenic 45.0%
GCTGGCCAAGCATTATTTGA+AGG + chr3.2:26903485-26903504 None:intergenic 45.0%
GGAGATAAAGGCAGTGCAAA+AGG + chr3.2:26903443-26903462 None:intergenic 45.0%
GTGAAGAGCCTGATCTATCT+TGG - chr3.2:26903732-26903751 MS.gene93348:CDS 45.0%
TAAAGGAACAGCAGATCCAG+TGG + chr3.2:26903342-26903361 None:intergenic 45.0%
TAGACCAGGAGTTAACAGGT+CGG + chr3.2:26903616-26903635 None:intergenic 45.0%
TCATCTTCATCTGCGGTAGA+AGG - chr3.2:26902537-26902556 MS.gene93348:CDS 45.0%
TGCATCTGCTCCTAATGTCA+TGG - chr3.2:26903373-26903392 MS.gene93348:CDS 45.0%
TGCTCCTAATGTCATGGACA+TGG - chr3.2:26903379-26903398 MS.gene93348:CDS 45.0%
TGGTACTAGTTGTGACCGAA+AGG - chr3.2:26903268-26903287 MS.gene93348:CDS 45.0%
! ACAGCTGTGTCGGTAAACTT+TGG + chr3.2:26902924-26902943 None:intergenic 45.0%
!! CAATGGTGGATGCTTCCTAT+GGG - chr3.2:26902610-26902629 MS.gene93348:CDS 45.0%
!! TCAATGGTGGATGCTTCCTA+TGG - chr3.2:26902609-26902628 MS.gene93348:CDS 45.0%
!! TGGCGCTGATATCAATTGTG+TGG - chr3.2:26902698-26902717 MS.gene93348:CDS 45.0%
!!! GAAGGACTGGTTTTATCACC+TGG - chr3.2:26902792-26902811 MS.gene93348:CDS 45.0%
AGAATGGTGCGATACCGATC+TGG + chr3.2:26903239-26903258 None:intergenic 50.0%
CGCACCATTCTCTGCAAAGA+TGG - chr3.2:26903248-26903267 MS.gene93348:CDS 50.0%
CTTCCTGGAAAGTGAAGAGC+TGG + chr3.2:26903503-26903522 None:intergenic 50.0%
GAATGGTGCGATACCGATCT+GGG + chr3.2:26903238-26903257 None:intergenic 50.0%
GCAGCCATGTCCATGACATT+AGG + chr3.2:26903386-26903405 None:intergenic 50.0%
GCTGCTACGAACCTTTATCG+TGG - chr3.2:26903404-26903423 MS.gene93348:CDS 50.0%
GCTGCTGACCATGAATGTCT+TGG + chr3.2:26903535-26903554 None:intergenic 50.0%
GTAAATGCTGCTGATGCTGC+TGG - chr3.2:26902678-26902697 MS.gene93348:CDS 50.0%
TAGGAGCAGATGCAGCTGAT+CGG + chr3.2:26903367-26903386 None:intergenic 50.0%
TCACTGAAATGGCACCAGGA+CGG + chr3.2:26903592-26903611 None:intergenic 50.0%
! AACAGGTCGGCTCACTGAAA+TGG + chr3.2:26903603-26903622 None:intergenic 50.0%
! CTCATGGACTATTCGAGACC+TGG - chr3.2:26903207-26903226 MS.gene93348:CDS 50.0%
! GGAGAGATGCCGTTTGCATA+TGG + chr3.2:26903464-26903483 None:intergenic 50.0%
!! AAACTTTGGAGCCACAGGAG+AGG + chr3.2:26902910-26902929 None:intergenic 50.0%
!! TCGGTAAACTTTGGAGCCAC+AGG + chr3.2:26902915-26902934 None:intergenic 50.0%
ACTGAAATGGCACCAGGACG+GGG + chr3.2:26903590-26903609 None:intergenic 55.0%
AGACCTGGCTACACCCAGAT+CGG - chr3.2:26903222-26903241 MS.gene93348:CDS 55.0%
AGGAGCAGATGCAGCTGATC+GGG + chr3.2:26903366-26903385 None:intergenic 55.0%
ATACCGATCTGGGTGTAGCC+AGG + chr3.2:26903228-26903247 None:intergenic 55.0%
CACTGAAATGGCACCAGGAC+GGG + chr3.2:26903591-26903610 None:intergenic 55.0%
GATGCAGCTGATCGGGGTAA+AGG + chr3.2:26903359-26903378 None:intergenic 55.0%
GCAGCATTTACACCAGCCTC+TGG + chr3.2:26902669-26902688 None:intergenic 55.0%
GGATGCTGATGGAAACCGTC+CGG - chr3.2:26902719-26902738 MS.gene93348:CDS 55.0%
TGAGCCGACCTGTTAACTCC+TGG - chr3.2:26903609-26903628 MS.gene93348:CDS 55.0%
TGGATCTCCATCCTCTCCTG+TGG - chr3.2:26902896-26902915 MS.gene93348:CDS 55.0%
TGGCCAGCTCTTCACTTTCC+AGG - chr3.2:26903497-26903516 MS.gene93348:CDS 55.0%
! TTTGGAGCCACAGGAGAGGA+TGG + chr3.2:26902906-26902925 None:intergenic 55.0%
ACACCAGCCTCTGGACCTGA+CGG + chr3.2:26902660-26902679 None:intergenic 60.0%
AGGGCATGGCACACAGCTGT+AGG + chr3.2:26903141-26903160 None:intergenic 60.0%
CGGCTCACTGAAATGGCACC+AGG + chr3.2:26903596-26903615 None:intergenic 60.0%
GGAGCAGATGCAGCTGATCG+GGG + chr3.2:26903365-26903384 None:intergenic 60.0%
GGTTACACCGTCAGGTCCAG+AGG - chr3.2:26902650-26902669 MS.gene93348:CDS 60.0%
TGCTGATGGAAACCGTCCGG+TGG - chr3.2:26902722-26902741 MS.gene93348:CDS 60.0%
TGTTTCTCACAGCCCCGTCC+TGG - chr3.2:26903575-26903594 MS.gene93348:CDS 60.0%
ACACCGTCAGGTCCAGAGGC+TGG - chr3.2:26902654-26902673 MS.gene93348:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 26902495 26903775 26902495 ID=MS.gene93348
chr3.2 mRNA 26902495 26903775 26902495 ID=MS.gene93348.t1;Parent=MS.gene93348
chr3.2 exon 26902495 26903775 26902495 ID=MS.gene93348.t1.exon1;Parent=MS.gene93348.t1
chr3.2 CDS 26902495 26903775 26902495 ID=cds.MS.gene93348.t1;Parent=MS.gene93348.t1
Gene Sequence

>MS.gene93348

ATGTACGGTGGTCCTAACAAATCAAAATCTCCTTCAATTTCGTCATCTTCATCTGCGGTAGAAGGTTCAAATAACGTCAATGACATGAAAAATCTAACTGTCTGTATAGCTGATTCAATGGTGGATGCTTCCTATGGGAGTATTAATACTTTAAAGGTTACACCGTCAGGTCCAGAGGCTGGTGTAAATGCTGCTGATGCTGCTGGCGCTGATATCAATTGTGTGGATGCTGATGGAAACCGTCCGGTGGATGTTAATGTTGTTCCTCATAAGCTCGAAATTGTGAAAACAAGTCTTGAAGGACTGGTTTTATCACCTGGTGCTGATATCGATTGTTCTCTTCCGCTATCTGTTAATTCATCAAGTCCTCATTCAGCTGCTCCTTTATCATCTGCTGAAAATGGATCTCCATCCTCTCCTGTGGCTCCAAAGTTTACCGACACAGCTGTTAATTCTACATCAGAAAAGAAAGAATATCCAATTGCACTTCCTAGTGTAGAAAGCAGCATGTACGCCACAGATGAATTTCGCATGTATTCGTTTAAGATCCTTCTTTGTCATCGTGCATACTCTCATGATTGGACCGAGTGTCCTTTTTACCATCCTTATGAGAATGCTCGAAGGAGAGACCTTAGAAAGTTCACCTACAGCTGTGTGCCATGCCCTGATTTTAAAAAAGGGGACTGCAAACGTGCAGATAATTGTGAATTTGCTCATGGACTATTCGAGACCTGGCTACACCCAGATCGGTATCGCACCATTCTCTGCAAAGATGGTACTAGTTGTGACCGAAAGGTGTGCTTTTTTGCACATGTAGCTGAAGAGCTGCGTCCAATATATGTGTCCACTGGATCTGCTGTTCCTTTACCCCGATCAGCTGCATCTGCTCCTAATGTCATGGACATGGCTGCTGCTACGAACCTTTATCGTGGTTTGCTACCAACTCCTTTTGCACTGCCTTTATCTCCATATGCAAACGGCATCTCTCCTTCAAATAATGCTTGGCCAGCTCTTCACTTTCCAGGAAGAAATATGTTCCAAGACATTCATGGTCAGCAGCATATGCTAAACGACATAAGCTGTTTCTCACAGCCCCGTCCTGGTGCCATTTCAGTGAGCCGACCTGTTAACTCCTGGTCTAAATGGGGTTCCAATACTGGAAAACTTGATTGGTCCGTTAACGGAAATGACTTTGATCGATCGCAAAGATATACCTCGTTTGAGCATGGAAACAATGGTGAAGAGCCTGATCTATCTTGGGTCCAATCTATTCTCAACTAA
Protein sequence

>MS.gene93348.t1

MYGGPNKSKSPSISSSSSAVEGSNNVNDMKNLTVCIADSMVDASYGSINTLKVTPSGPEAGVNAADAAGADINCVDADGNRPVDVNVVPHKLEIVKTSLEGLVLSPGADIDCSLPLSVNSSSPHSAAPLSSAENGSPSSPVAPKFTDTAVNSTSEKKEYPIALPSVESSMYATDEFRMYSFKILLCHRAYSHDWTECPFYHPYENARRRDLRKFTYSCVPCPDFKKGDCKRADNCEFAHGLFETWLHPDRYRTILCKDGTSCDRKVCFFAHVAEELRPIYVSTGSAVPLPRSAASAPNVMDMAAATNLYRGLLPTPFALPLSPYANGISPSNNAWPALHFPGRNMFQDIHGQQHMLNDISCFSQPRPGAISVSRPVNSWSKWGSNTGKLDWSVNGNDFDRSQRYTSFEHGNNGEEPDLSWVQSILN