AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93352

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93352.t1 MTR_3g435590 88.889 477 44 2 1 476 1 469 0.0 869
MS.gene93352.t1 MTR_3g029590 65.253 495 102 6 1 425 1 495 0.0 554
MS.gene93352.t1 MTR_3g029590 67.857 56 17 1 421 475 626 681 1.48e-15 79.7
MS.gene93352.t1 MTR_3g435680 61.593 427 91 11 88 476 5 396 1.19e-163 468
MS.gene93352.t1 MTR_7g092070 50.749 467 159 9 26 425 33 495 7.63e-139 416
MS.gene93352.t1 MTR_7g092070 45.333 75 40 1 402 475 601 675 8.87e-11 64.7
MS.gene93352.t1 MTR_0728s0020 46.336 464 169 7 24 419 15 466 1.62e-127 384
MS.gene93352.t1 MTR_1g050438 46.104 462 169 7 26 419 1 450 1.34e-126 380
MS.gene93352.t1 MTR_5g082830 48.773 326 143 3 38 360 28 332 2.56e-100 315
MS.gene93352.t1 MTR_5g071070 44.389 401 185 9 1 390 1 374 2.13e-92 295
MS.gene93352.t1 MTR_1g075890 48.765 324 157 4 37 360 30 344 1.29e-90 289
MS.gene93352.t1 MTR_3g070880 43.887 319 127 2 38 356 8 274 3.33e-86 274
MS.gene93352.t1 MTR_5g071070 47.588 311 136 5 88 390 1 292 6.79e-81 263
MS.gene93352.t1 MTR_3g464260 40.260 308 135 4 45 352 30 288 6.42e-62 211
MS.gene93352.t1 MTR_3g464280 35.831 307 129 4 42 348 19 257 4.57e-49 175
MS.gene93352.t1 MTR_8g102100 60.833 120 46 1 241 359 77 196 6.72e-48 169
MS.gene93352.t1 MTR_6g090380 65.421 107 37 0 241 347 99 205 1.17e-47 169
MS.gene93352.t1 MTR_3g103960 38.866 247 135 7 235 476 43 278 2.44e-46 162
MS.gene93352.t1 MTR_4g078660 48.201 139 66 2 215 347 24 162 9.27e-42 151
MS.gene93352.t1 MTR_2g090605 62.136 103 39 0 245 347 77 179 1.22e-41 153
MS.gene93352.t1 MTR_3g464290 63.542 96 34 1 224 318 79 174 3.85e-36 139
MS.gene93352.t1 MTR_3g464270 50.833 120 58 1 244 362 8 127 1.79e-35 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93352.t1 AT2G41900 55.764 373 148 3 25 384 33 401 2.60e-131 397
MS.gene93352.t1 AT5G12850 48.694 421 170 10 1 388 1 408 7.86e-119 364
MS.gene93352.t1 AT3G55980 46.417 321 144 2 40 358 30 324 2.58e-93 294
MS.gene93352.t1 AT2G40140 40.930 430 205 11 1 424 1 387 4.78e-93 294
MS.gene93352.t1 AT2G40140 40.930 430 205 11 1 424 1 387 4.78e-93 294
MS.gene93352.t1 AT5G58620 45.732 328 160 4 37 360 11 324 1.59e-92 293
MS.gene93352.t1 AT3G55980 46.417 321 144 2 40 358 97 391 1.73e-92 294
MS.gene93352.t1 AT5G07500 60.156 128 51 0 227 354 34 161 2.34e-51 174
MS.gene93352.t1 AT2G25900 63.551 107 39 0 241 347 86 192 1.08e-47 167
MS.gene93352.t1 AT2G25900 63.551 107 39 0 241 347 86 192 1.08e-47 167
MS.gene93352.t1 AT4G29190 56.391 133 57 1 219 351 54 185 2.88e-46 164
MS.gene93352.t1 AT2G19810 56.589 129 55 1 219 347 53 180 3.78e-45 161
MS.gene93352.t1 AT1G03790 52.055 146 62 3 223 364 64 205 2.27e-42 155
MS.gene93352.t1 AT5G44260 55.556 126 51 2 223 347 42 163 9.28e-41 150

Find 109 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTGTAGGTGAACTTTCT+AGG 0.217092 3.2:+26871861 None:intergenic
ACCAAAGTCATTTCCATTTA+CGG 0.262627 3.2:+26871377 None:intergenic
AAACCTGATTGGTCCGTAAA+TGG 0.274186 3.2:-26871390 MS.gene93352:CDS
GAACAATTTAAGGTAGCTTT+AGG 0.281412 3.2:-26872554 MS.gene93352:CDS
ATTTCAACTTCATCTGCTTT+AGG 0.286929 3.2:-26872671 MS.gene93352:CDS
CAATTCCTATTTCTAAAATC+AGG 0.292610 3.2:+26871828 None:intergenic
TTCTCTTGAGGATGGTAAAA+AGG 0.301619 3.2:+26871900 None:intergenic
TTCTGTCCTCGAGAACAATT+TGG 0.311928 3.2:+26872471 None:intergenic
CTTCCGCTGTCTTGTGAAAA+GGG 0.344829 3.2:-26872116 MS.gene93352:CDS
GCTTCCGCTGTCTTGTGAAA+AGG 0.357025 3.2:-26872117 MS.gene93352:CDS
TATATGCTGTTTCGTATATC+AGG 0.367270 3.2:+26872002 None:intergenic
TATCTTAGTTGACAAGAGAT+TGG 0.368449 3.2:+26871289 None:intergenic
AGCTTATGGGGAACGACAAT+TGG 0.370548 3.2:+26872212 None:intergenic
CGAGGACAGAACCGCTTTGA+TGG 0.377143 3.2:-26872459 MS.gene93352:CDS
TATGCAAATGGCCTCTTTGA+TGG 0.380891 3.2:-26871522 MS.gene93352:CDS
TCAGGAATTGATGGATCAAT+TGG 0.382999 3.2:+26872020 None:intergenic
CTGTTTCTCACAGCCCCGTC+CGG 0.385820 3.2:-26871472 MS.gene93352:CDS
AGATGAATTTCGCATGTATT+CGG 0.386064 3.2:-26871973 MS.gene93352:CDS
TTTCACGATTTCGAGCTTAT+GGG 0.393900 3.2:+26872199 None:intergenic
AGCAGATGCAGCTGATCTAA+TGG 0.394681 3.2:+26871647 None:intergenic
GATTGGACCCAAGATATATC+AGG 0.394954 3.2:+26871306 None:intergenic
TTGAAGAGCCTGATATATCT+TGG 0.396118 3.2:-26871314 MS.gene93352:CDS
GCCTGGTGTGTCCGTCAAAA+TGG 0.397875 3.2:-26872500 MS.gene93352:CDS
TTTCCATTTACGGACCAATC+AGG 0.419002 3.2:+26871387 None:intergenic
ATACTTTCATCTTCAGAGGC+TGG 0.429494 3.2:-26872398 MS.gene93352:CDS
CACTGAAATGGTACCCGGAC+GGG 0.432326 3.2:+26871458 None:intergenic
TCTAAGTGGGGATCTCATAC+TGG 0.434509 3.2:-26871414 MS.gene93352:CDS
ATCTATTGTGTGGATGCTAA+TGG 0.442376 3.2:-26872263 MS.gene93352:CDS
TTTCGTATATCAGGAATTGA+TGG 0.454148 3.2:+26872011 None:intergenic
CTCATACTGGTAAACCTGAT+TGG 0.455830 3.2:-26871401 MS.gene93352:CDS
GCAGCCATGTCCATGACAAT+AGG 0.459445 3.2:+26871624 None:intergenic
GCTGATGAGCCTGTTGATGA+TGG 0.474997 3.2:-26872143 MS.gene93352:CDS
ATCGTGCATACACTCATGAT+TGG 0.479539 3.2:-26871932 MS.gene93352:CDS
AGATACAAAGGCTGTGCAAA+AGG 0.480808 3.2:+26871546 None:intergenic
AACAGACCGACTCACTGAAA+TGG 0.484349 3.2:+26871446 None:intergenic
ATTGTTTCCATGCTGAAAAG+AGG 0.484399 3.2:+26871338 None:intergenic
AGGCTTGTGCGATACTGATC+TGG 0.489915 3.2:+26871750 None:intergenic
CTCCTTCGTGCATTCTCTTG+AGG 0.491168 3.2:+26871888 None:intergenic
CGCACAAGCCTTTGCAAAGA+GGG 0.495365 3.2:-26871738 MS.gene93352:CDS
GGAAGCGAACCATCATCAAC+AGG 0.501605 3.2:+26872134 None:intergenic
ACAGCTGTGTCGGTAAACTT+TGG 0.503937 3.2:+26872071 None:intergenic
AGAAGCATGTTCAAGTAAGC+TGG 0.506422 3.2:+26872589 None:intergenic
CCTTTGTATCTATATGCAAA+TGG 0.509335 3.2:-26871534 MS.gene93352:CDS
TCCGTAAATGGAAATGACTT+TGG 0.511355 3.2:-26871378 MS.gene93352:CDS
CTGTGCTGCTTCGAGTGGTA+CGG 0.514258 3.2:-26872333 MS.gene93352:CDS
TGTTAACTCCTCGTCTAAGT+GGG 0.516543 3.2:-26871427 MS.gene93352:CDS
TGTTTCTCACAGCCCCGTCC+GGG 0.517747 3.2:-26871471 MS.gene93352:CDS
TGAAGAGCCTGATATATCTT+GGG 0.518053 3.2:-26871313 MS.gene93352:CDS
TCAACTTCATCTGCTTTAGG+AGG 0.524656 3.2:-26872668 MS.gene93352:CDS
AATTCCTATTTCTAAAATCA+GGG 0.524886 3.2:+26871829 None:intergenic
GAAATAGGAATTGCAGACGC+GGG 0.527252 3.2:-26871818 MS.gene93352:CDS
TTTGGAGCCACAGGAGAGGA+TGG 0.530352 3.2:+26872089 None:intergenic
CTGTTAACTCCTCGTCTAAG+TGG 0.534143 3.2:-26871428 MS.gene93352:CDS
ACTGAAATGGTACCCGGACG+GGG 0.536002 3.2:+26871459 None:intergenic
CTCATGGAGTATTCGAGACC+TGG 0.539512 3.2:-26871779 MS.gene93352:CDS
AGCTGTAGGTGAACTTTCTA+GGG 0.540690 3.2:+26871862 None:intergenic
TCGGTAAACTTTGGAGCCAC+AGG 0.542025 3.2:+26872080 None:intergenic
AACTAGTACCCTCTTTGCAA+AGG 0.543250 3.2:+26871730 None:intergenic
GCTTATACTTTCATCTTCAG+AGG 0.545789 3.2:-26872402 MS.gene93352:CDS
TAGAATATCAATACTCCCAC+AGG 0.547853 3.2:+26872427 None:intergenic
TGCTCCTATTGTCATGGACA+TGG 0.553647 3.2:-26871628 MS.gene93352:CDS
TTCACGATTTCGAGCTTATG+GGG 0.556465 3.2:+26872200 None:intergenic
ATACTGATCTGGATGTAGCC+AGG 0.556939 3.2:+26871761 None:intergenic
TTCGTGCATTCTCTTGAGGA+TGG 0.557083 3.2:+26871892 None:intergenic
AAAGGCTGTGCAAAAGGTGA+TGG 0.567762 3.2:+26871552 None:intergenic
CGGGTACCATTTCAGTGAGT+CGG 0.574233 3.2:-26871452 MS.gene93352:CDS
TGCATCTGCTCCTATTGTCA+TGG 0.581920 3.2:-26871634 MS.gene93352:CDS
TGTTACATGAAGTTGGCGCC+TGG 0.582164 3.2:-26872517 MS.gene93352:CDS
CTATTTCTAAAATCAGGGCA+TGG 0.583052 3.2:+26871834 None:intergenic
TTGATGGTGGCAGCATCCTG+TGG 0.583783 3.2:-26872443 MS.gene93352:CDS
AGCAGCACAGTGAAGAGCAG+TGG 0.584568 3.2:+26872346 None:intergenic
AGGGCATGGCACACAGCTGT+AGG 0.585274 3.2:+26871848 None:intergenic
ATTTCGCATGTATTCGGTCA+AGG 0.587008 3.2:-26871967 MS.gene93352:CDS
GCCTCGCTGTTACATGAAGT+TGG 0.589446 3.2:-26872524 MS.gene93352:CDS
GGATGCTAATGGAAACCGTC+CGG 0.590775 3.2:-26872252 MS.gene93352:CDS
TGATGGTGGCAGCATCCTGT+GGG 0.591002 3.2:-26872442 MS.gene93352:CDS
GGGGTCTCCATCCTCTCCTG+TGG 0.592440 3.2:-26872096 MS.gene93352:CDS
GATCTAATGGAAGCATGCGA+TGG 0.592544 3.2:+26871660 None:intergenic
CGACTCACTGAAATGGTACC+CGG 0.592848 3.2:+26871453 None:intergenic
GATATGTGTGAATATGCTCA+TGG 0.598080 3.2:-26871795 MS.gene93352:CDS
GGAAGAACAATAACATCCAC+CGG 0.599918 3.2:+26872233 None:intergenic
TTCCGCTGTCTTGTGAAAAG+GGG 0.600730 3.2:-26872115 MS.gene93352:CDS
GCTGCAACGAGCCTTTGTCG+TGG 0.600822 3.2:-26871603 MS.gene93352:CDS
CCATTTGCATATAGATACAA+AGG 0.602439 3.2:+26871534 None:intergenic
TGCATACACTCATGATTGGA+CGG 0.607703 3.2:-26871928 MS.gene93352:CDS
TCACTGAAATGGTACCCGGA+CGG 0.621764 3.2:+26871457 None:intergenic
GGACAGAACCGCTTTGATGG+TGG 0.626702 3.2:-26872456 MS.gene93352:CDS
TTCAGAACTAACAGCTGTGT+CGG 0.628333 3.2:+26872061 None:intergenic
CTTCACTGTGCTGCTTCGAG+TGG 0.634753 3.2:-26872338 MS.gene93352:CDS
GCTAATTGAAGGATGTGCGG+TGG 0.634780 3.2:-26872713 None:intergenic
GGGTACTAGTTGTAACCGAA+AGG 0.639928 3.2:-26871718 MS.gene93352:CDS
TTGATAGTGAACCACGACAA+AGG 0.649293 3.2:+26871592 None:intergenic
TGTATGCACGATGACAAAGA+AGG 0.653054 3.2:+26871943 None:intergenic
ACATAACCAAATTGTTCTCG+AGG 0.657807 3.2:-26872477 MS.gene93352:CDS
GAACAATAACATCCACCGGA+CGG 0.659004 3.2:+26872237 None:intergenic
TGCTAATGGAAACCGTCCGG+TGG 0.659107 3.2:-26872249 MS.gene93352:CDS
TCGCACAAGCCTTTGCAAAG+AGG 0.659587 3.2:-26871739 MS.gene93352:CDS
AAACTTTGGAGCCACAGGAG+AGG 0.663839 3.2:+26872085 None:intergenic
GTTAACTCCTCGTCTAAGTG+GGG 0.664476 3.2:-26871426 MS.gene93352:CDS
TGGTGCTGACATCTATTGTG+TGG 0.667410 3.2:-26872273 MS.gene93352:CDS
AAATAGGAATTGCAGACGCG+GGG 0.674949 3.2:-26871817 MS.gene93352:CDS
AGAAATAGGAATTGCAGACG+CGG 0.678930 3.2:-26871819 MS.gene93352:CDS
TGTGCTGCTGACCATCAAAG+AGG 0.681128 3.2:+26871511 None:intergenic
TCAGCTAATTGAAGGATGTG+CGG 0.686760 3.2:-26872716 None:intergenic
ATACATGCGAAATTCATCTG+TGG 0.693580 3.2:+26871977 None:intergenic
ATGAGATCCCCACTTAGACG+AGG 0.708111 3.2:+26871419 None:intergenic
GGATGCTGCCACCATCAAAG+CGG 0.735185 3.2:+26872448 None:intergenic
ATCCTCAAGAGAATGCACGA+AGG 0.738867 3.2:-26871890 MS.gene93352:CDS
GCCAACTTCATGTAACAGCG+AGG 0.747623 3.2:+26872523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCCTATTTCTAAAATCA+GGG + chr3.2:26872168-26872187 None:intergenic 20.0%
!!! ATTGGATATTTTTTCTTTTC+TGG + chr3.2:26871959-26871978 None:intergenic 20.0%
!!! GAATGATTTTGAACAATTTA+AGG - chr3.2:26871430-26871449 MS.gene93352:CDS 20.0%
!!! CAATTCCTATTTCTAAAATC+AGG + chr3.2:26872169-26872188 None:intergenic 25.0%
ACCAAAGTCATTTCCATTTA+CGG + chr3.2:26872620-26872639 None:intergenic 30.0%
AGATGAATTTCGCATGTATT+CGG - chr3.2:26872021-26872040 MS.gene93352:CDS 30.0%
ATTTCAACTTCATCTGCTTT+AGG - chr3.2:26871323-26871342 MS.gene93352:CDS 30.0%
CCATTTGCATATAGATACAA+AGG + chr3.2:26872463-26872482 None:intergenic 30.0%
CCTTTGTATCTATATGCAAA+TGG - chr3.2:26872460-26872479 MS.gene93352:CDS 30.0%
TTTCGTATATCAGGAATTGA+TGG + chr3.2:26871986-26872005 None:intergenic 30.0%
! CTGGTGTAAATTTTTCTTGT+GGG - chr3.2:26871615-26871634 MS.gene93352:CDS 30.0%
! GAACAATTTAAGGTAGCTTT+AGG - chr3.2:26871440-26871459 MS.gene93352:CDS 30.0%
! TTTGGTTATGTCCATTTTGA+CGG + chr3.2:26871508-26871527 None:intergenic 30.0%
!! TATATGCTGTTTCGTATATC+AGG + chr3.2:26871995-26872014 None:intergenic 30.0%
ACATAACCAAATTGTTCTCG+AGG - chr3.2:26871517-26871536 MS.gene93352:CDS 35.0%
ATACATGCGAAATTCATCTG+TGG + chr3.2:26872020-26872039 None:intergenic 35.0%
ATCTATTGTGTGGATGCTAA+TGG - chr3.2:26871731-26871750 MS.gene93352:CDS 35.0%
ATTGTTTCCATGCTGAAAAG+AGG + chr3.2:26872659-26872678 None:intergenic 35.0%
GATATGTGTGAATATGCTCA+TGG - chr3.2:26872199-26872218 MS.gene93352:CDS 35.0%
GCTTATACTTTCATCTTCAG+AGG - chr3.2:26871592-26871611 MS.gene93352:CDS 35.0%
TAGAATATCAATACTCCCAC+AGG + chr3.2:26871570-26871589 None:intergenic 35.0%
TCCGTAAATGGAAATGACTT+TGG - chr3.2:26872616-26872635 MS.gene93352:CDS 35.0%
TGAAGAGCCTGATATATCTT+GGG - chr3.2:26872681-26872700 MS.gene93352:CDS 35.0%
TTCTCTTGAGGATGGTAAAA+AGG + chr3.2:26872097-26872116 None:intergenic 35.0%
TTGAAGAGCCTGATATATCT+TGG - chr3.2:26872680-26872699 MS.gene93352:CDS 35.0%
TTTCACGATTTCGAGCTTAT+GGG + chr3.2:26871798-26871817 None:intergenic 35.0%
! AGATATACCTCTTTTCAGCA+TGG - chr3.2:26872649-26872668 MS.gene93352:CDS 35.0%
! GCTGGTGTAAATTTTTCTTG+TGG - chr3.2:26871614-26871633 MS.gene93352:CDS 35.0%
! TCAGGAATTGATGGATCAAT+TGG + chr3.2:26871977-26871996 None:intergenic 35.0%
! TTTTCACGATTTCGAGCTTA+TGG + chr3.2:26871799-26871818 None:intergenic 35.0%
!! CATGCCCTGATTTTAGAAAT+AGG - chr3.2:26872161-26872180 MS.gene93352:CDS 35.0%
!! CTATTTCTAAAATCAGGGCA+TGG + chr3.2:26872163-26872182 None:intergenic 35.0%
!! GTAAAACTGCTTTTATCAGC+TGG - chr3.2:26871701-26871720 MS.gene93352:CDS 35.0%
AACTAGTACCCTCTTTGCAA+AGG + chr3.2:26872267-26872286 None:intergenic 40.0%
AGAAATAGGAATTGCAGACG+CGG - chr3.2:26872175-26872194 MS.gene93352:CDS 40.0%
AGATACAAAGGCTGTGCAAA+AGG + chr3.2:26872451-26872470 None:intergenic 40.0%
AGCTGTAGGTGAACTTTCTA+GGG + chr3.2:26872135-26872154 None:intergenic 40.0%
ATACTTTCATCTTCAGAGGC+TGG - chr3.2:26871596-26871615 MS.gene93352:CDS 40.0%
ATCGTGCATACACTCATGAT+TGG - chr3.2:26872062-26872081 MS.gene93352:CDS 40.0%
ATTTCGCATGTATTCGGTCA+AGG - chr3.2:26872027-26872046 MS.gene93352:CDS 40.0%
CTCATACTGGTAAACCTGAT+TGG - chr3.2:26872593-26872612 MS.gene93352:CDS 40.0%
GATTGGACCCAAGATATATC+AGG + chr3.2:26872691-26872710 None:intergenic 40.0%
GGAAGAACAATAACATCCAC+CGG + chr3.2:26871764-26871783 None:intergenic 40.0%
TATGCAAATGGCCTCTTTGA+TGG - chr3.2:26872472-26872491 MS.gene93352:CDS 40.0%
TGCATACACTCATGATTGGA+CGG - chr3.2:26872066-26872085 MS.gene93352:CDS 40.0%
TGTATGCACGATGACAAAGA+AGG + chr3.2:26872054-26872073 None:intergenic 40.0%
TGTTAACTCCTCGTCTAAGT+GGG - chr3.2:26872567-26872586 MS.gene93352:CDS 40.0%
TTCACGATTTCGAGCTTATG+GGG + chr3.2:26871797-26871816 None:intergenic 40.0%
TTCAGAACTAACAGCTGTGT+CGG + chr3.2:26871936-26871955 None:intergenic 40.0%
TTCTGTCCTCGAGAACAATT+TGG + chr3.2:26871526-26871545 None:intergenic 40.0%
TTTCCATTTACGGACCAATC+AGG + chr3.2:26872610-26872629 None:intergenic 40.0%
! AAACCTGATTGGTCCGTAAA+TGG - chr3.2:26872604-26872623 MS.gene93352:CDS 40.0%
! AGAAGCATGTTCAAGTAAGC+TGG + chr3.2:26871408-26871427 None:intergenic 40.0%
! GTGCAAAAAAGCACACCTTT+CGG + chr3.2:26872294-26872313 None:intergenic 40.0%
! TCAACTTCATCTGCTTTAGG+AGG - chr3.2:26871326-26871345 MS.gene93352:CDS 40.0%
!! TTGATAGTGAACCACGACAA+AGG + chr3.2:26872405-26872424 None:intergenic 40.0%
AAAGGCTGTGCAAAAGGTGA+TGG + chr3.2:26872445-26872464 None:intergenic 45.0%
AAATAGGAATTGCAGACGCG+GGG - chr3.2:26872177-26872196 MS.gene93352:CDS 45.0%
AGCAGATGCAGCTGATCTAA+TGG + chr3.2:26872350-26872369 None:intergenic 45.0%
AGCTTATGGGGAACGACAAT+TGG + chr3.2:26871785-26871804 None:intergenic 45.0%
ATACTGATCTGGATGTAGCC+AGG + chr3.2:26872236-26872255 None:intergenic 45.0%
ATCCTCAAGAGAATGCACGA+AGG - chr3.2:26872104-26872123 MS.gene93352:CDS 45.0%
CAGCTGTAGGTGAACTTTCT+AGG + chr3.2:26872136-26872155 None:intergenic 45.0%
CTGTTAACTCCTCGTCTAAG+TGG - chr3.2:26872566-26872585 MS.gene93352:CDS 45.0%
CTTCCGCTGTCTTGTGAAAA+GGG - chr3.2:26871878-26871897 MS.gene93352:CDS 45.0%
GAAATAGGAATTGCAGACGC+GGG - chr3.2:26872176-26872195 MS.gene93352:CDS 45.0%
GAACAATAACATCCACCGGA+CGG + chr3.2:26871760-26871779 None:intergenic 45.0%
GGGTACTAGTTGTAACCGAA+AGG - chr3.2:26872276-26872295 MS.gene93352:CDS 45.0%
GTTAACTCCTCGTCTAAGTG+GGG - chr3.2:26872568-26872587 MS.gene93352:CDS 45.0%
TCTAAGTGGGGATCTCATAC+TGG - chr3.2:26872580-26872599 MS.gene93352:CDS 45.0%
TGCATCTGCTCCTATTGTCA+TGG - chr3.2:26872360-26872379 MS.gene93352:CDS 45.0%
TGCTCCTATTGTCATGGACA+TGG - chr3.2:26872366-26872385 MS.gene93352:CDS 45.0%
TTCCGCTGTCTTGTGAAAAG+GGG - chr3.2:26871879-26871898 MS.gene93352:CDS 45.0%
TTCGTGCATTCTCTTGAGGA+TGG + chr3.2:26872105-26872124 None:intergenic 45.0%
! AACAGACCGACTCACTGAAA+TGG + chr3.2:26872551-26872570 None:intergenic 45.0%
! ACAGCTGTGTCGGTAAACTT+TGG + chr3.2:26871926-26871945 None:intergenic 45.0%
! GATCTAATGGAAGCATGCGA+TGG + chr3.2:26872337-26872356 None:intergenic 45.0%
!! TGGTGCTGACATCTATTGTG+TGG - chr3.2:26871721-26871740 MS.gene93352:CDS 45.0%
AGGCTTGTGCGATACTGATC+TGG + chr3.2:26872247-26872266 None:intergenic 50.0%
ATGAGATCCCCACTTAGACG+AGG + chr3.2:26872578-26872597 None:intergenic 50.0%
CGACTCACTGAAATGGTACC+CGG + chr3.2:26872544-26872563 None:intergenic 50.0%
CGCACAAGCCTTTGCAAAGA+GGG - chr3.2:26872256-26872275 MS.gene93352:CDS 50.0%
CGGGTACCATTTCAGTGAGT+CGG - chr3.2:26872542-26872561 MS.gene93352:CDS 50.0%
CTCCTTCGTGCATTCTCTTG+AGG + chr3.2:26872109-26872128 None:intergenic 50.0%
GCAGCCATGTCCATGACAAT+AGG + chr3.2:26872373-26872392 None:intergenic 50.0%
GCCAACTTCATGTAACAGCG+AGG + chr3.2:26871474-26871493 None:intergenic 50.0%
GCCTCGCTGTTACATGAAGT+TGG - chr3.2:26871470-26871489 MS.gene93352:CDS 50.0%
GCTTCCGCTGTCTTGTGAAA+AGG - chr3.2:26871877-26871896 MS.gene93352:CDS 50.0%
GGAAGCGAACCATCATCAAC+AGG + chr3.2:26871863-26871882 None:intergenic 50.0%
GGATGCTAATGGAAACCGTC+CGG - chr3.2:26871742-26871761 MS.gene93352:CDS 50.0%
TCACTGAAATGGTACCCGGA+CGG + chr3.2:26872540-26872559 None:intergenic 50.0%
TCGCACAAGCCTTTGCAAAG+AGG - chr3.2:26872255-26872274 MS.gene93352:CDS 50.0%
TGTTACATGAAGTTGGCGCC+TGG - chr3.2:26871477-26871496 MS.gene93352:CDS 50.0%
! CTCATGGAGTATTCGAGACC+TGG - chr3.2:26872215-26872234 MS.gene93352:CDS 50.0%
! GACCCCTTTTCACAAGACAG+CGG + chr3.2:26871884-26871903 None:intergenic 50.0%
! GCTGATGAGCCTGTTGATGA+TGG - chr3.2:26871851-26871870 MS.gene93352:CDS 50.0%
! TGTGCTGCTGACCATCAAAG+AGG + chr3.2:26872486-26872505 None:intergenic 50.0%
!! AAACTTTGGAGCCACAGGAG+AGG + chr3.2:26871912-26871931 None:intergenic 50.0%
!! TCCATTTTGACGGACACACC+AGG + chr3.2:26871498-26871517 None:intergenic 50.0%
!! TCGGTAAACTTTGGAGCCAC+AGG + chr3.2:26871917-26871936 None:intergenic 50.0%
ACTGAAATGGTACCCGGACG+GGG + chr3.2:26872538-26872557 None:intergenic 55.0%
AGCAGCACAGTGAAGAGCAG+TGG + chr3.2:26871651-26871670 None:intergenic 55.0%
CACTGAAATGGTACCCGGAC+GGG + chr3.2:26872539-26872558 None:intergenic 55.0%
CGAGGACAGAACCGCTTTGA+TGG - chr3.2:26871535-26871554 MS.gene93352:CDS 55.0%
GCCTGGTGTGTCCGTCAAAA+TGG - chr3.2:26871494-26871513 MS.gene93352:CDS 55.0%
GGACAGAACCGCTTTGATGG+TGG - chr3.2:26871538-26871557 MS.gene93352:CDS 55.0%
GGATGCTGCCACCATCAAAG+CGG + chr3.2:26871549-26871568 None:intergenic 55.0%
TGCTAATGGAAACCGTCCGG+TGG - chr3.2:26871745-26871764 MS.gene93352:CDS 55.0%
! TTTGGAGCCACAGGAGAGGA+TGG + chr3.2:26871908-26871927 None:intergenic 55.0%
!! CTGTGCTGCTTCGAGTGGTA+CGG - chr3.2:26871661-26871680 MS.gene93352:CDS 55.0%
!! CTTCACTGTGCTGCTTCGAG+TGG - chr3.2:26871656-26871675 MS.gene93352:CDS 55.0%
!! TGATGGTGGCAGCATCCTGT+GGG - chr3.2:26871552-26871571 MS.gene93352:CDS 55.0%
!! TTGATGGTGGCAGCATCCTG+TGG - chr3.2:26871551-26871570 MS.gene93352:CDS 55.0%
AGGGCATGGCACACAGCTGT+AGG + chr3.2:26872149-26872168 None:intergenic 60.0%
GCTGCAACGAGCCTTTGTCG+TGG - chr3.2:26872391-26872410 MS.gene93352:CDS 60.0%
TGTTTCTCACAGCCCCGTCC+GGG - chr3.2:26872523-26872542 MS.gene93352:CDS 60.0%
! CTGTTTCTCACAGCCCCGTC+CGG - chr3.2:26872522-26872541 MS.gene93352:CDS 60.0%
GGGGTCTCCATCCTCTCCTG+TGG - chr3.2:26871898-26871917 MS.gene93352:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 26871293 26872723 26871293 ID=MS.gene93352
chr3.2 mRNA 26871293 26872723 26871293 ID=MS.gene93352.t1;Parent=MS.gene93352
chr3.2 exon 26871293 26872723 26871293 ID=MS.gene93352.t1.exon1;Parent=MS.gene93352.t1
chr3.2 CDS 26871293 26872723 26871293 ID=cds.MS.gene93352.t1;Parent=MS.gene93352.t1
Gene Sequence

>MS.gene93352

ATGTGCGGTGGACTTGAAAAATCAACATGTATTTCAACTTCATCTGCTTTAGGAGGTTCAGATATCGTCAAAGACATGAAAAATCTAACTGTTAGTACAGATGATTCTTTGTCCAGCTTACTTGAACATGCTTCTAAGAATGATTTTGAACAATTTAAGGTAGCTTTAGGTTGTGATGCCTCGCTGTTACATGAAGTTGGCGCCTGGTGTGTCCGTCAAAATGGACATAACCAAATTGTTCTCGAGGACAGAACCGCTTTGATGGTGGCAGCATCCTGTGGGAGTATTGATATTCTAAAGCTTATACTTTCATCTTCAGAGGCTGGTGTAAATTTTTCTTGTGGGACTGATAAAACCACTGCTCTTCACTGTGCTGCTTCGAGTGGTACGGTTAATGCTGTTGATGCTGTAAAACTGCTTTTATCAGCTGGTGCTGACATCTATTGTGTGGATGCTAATGGAAACCGTCCGGTGGATGTTATTGTTCTTCCAATTGTCGTTCCCCATAAGCTCGAAATCGTGAAAAGAAGTCTTGAACAACTTCTCTCAAAAAGTGCTGCTGATGAGCCTGTTGATGATGGTTCGCTTCCGCTGTCTTGTGAAAAGGGGTCTCCATCCTCTCCTGTGGCTCCAAAGTTTACCGACACAGCTGTTAGTTCTGAACCAGAAAAGAAAAAATATCCAATTGATCCATCAATTCCTGATATACGAAACAGCATATACGCCACAGATGAATTTCGCATGTATTCGGTCAAGGTCCTTCTTTGTCATCGTGCATACACTCATGATTGGACGGAGTGTCCTTTTTACCATCCTCAAGAGAATGCACGAAGGAGAGACCCTAGAAAGTTCACCTACAGCTGTGTGCCATGCCCTGATTTTAGAAATAGGAATTGCAGACGCGGGGATATGTGTGAATATGCTCATGGAGTATTCGAGACCTGGCTACATCCAGATCAGTATCGCACAAGCCTTTGCAAAGAGGGTACTAGTTGTAACCGAAAGGTGTGCTTTTTTGCACATGTTGCTGAAGAGCTGCGTCCATCGCATGCTTCCATTAGATCAGCTGCATCTGCTCCTATTGTCATGGACATGGCTGCTGCAACGAGCCTTTGTCGTGGTTCACTATCAACAATCTCTTCGATGTATCCATCACCTTTTGCACAGCCTTTGTATCTATATGCAAATGGCCTCTTTGATGGTCAGCAGCACATGCTAAATGACTTGAGCTGTTTCTCACAGCCCCGTCCGGGTACCATTTCAGTGAGTCGGTCTGTTAACTCCTCGTCTAAGTGGGGATCTCATACTGGTAAACCTGATTGGTCCGTAAATGGAAATGACTTTGGTCGATCGCAAAGATATACCTCTTTTCAGCATGGAAACAATGTTGAAGAGCCTGATATATCTTGGGTCCAATCTCTTGTCAACTAA
Protein sequence

>MS.gene93352.t1

MCGGLEKSTCISTSSALGGSDIVKDMKNLTVSTDDSLSSLLEHASKNDFEQFKVALGCDASLLHEVGAWCVRQNGHNQIVLEDRTALMVAASCGSIDILKLILSSSEAGVNFSCGTDKTTALHCAASSGTVNAVDAVKLLLSAGADIYCVDANGNRPVDVIVLPIVVPHKLEIVKRSLEQLLSKSAADEPVDDGSLPLSCEKGSPSSPVAPKFTDTAVSSEPEKKKYPIDPSIPDIRNSIYATDEFRMYSVKVLLCHRAYTHDWTECPFYHPQENARRRDPRKFTYSCVPCPDFRNRNCRRGDMCEYAHGVFETWLHPDQYRTSLCKEGTSCNRKVCFFAHVAEELRPSHASIRSAASAPIVMDMAAATSLCRGSLSTISSMYPSPFAQPLYLYANGLFDGQQHMLNDLSCFSQPRPGTISVSRSVNSSSKWGSHTGKPDWSVNGNDFGRSQRYTSFQHGNNVEEPDISWVQSLVN