Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93356.t1 | XP_013459288.2 | 86.9 | 289 | 29 | 3 | 1 | 289 | 1 | 280 | 3.40E-138 | 501.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93356.t1 | Q9CA66 | 56.8 | 132 | 53 | 1 | 154 | 281 | 135 | 266 | 8.8e-34 | 145.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93356.t1 | A0A2K3L4M1 | 71.2 | 288 | 65 | 8 | 1 | 284 | 1 | 274 | 4.6e-100 | 374.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene93356.t1 | TF | RWP-RK |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93356.t1 | MTR_3g435550 | 88.265 | 196 | 19 | 2 | 94 | 289 | 1 | 192 | 1.14e-124 | 354 |
MS.gene93356.t1 | MTR_3g091700 | 50.467 | 107 | 47 | 1 | 159 | 265 | 159 | 259 | 4.42e-30 | 114 |
MS.gene93356.t1 | MTR_0140s0010 | 40.805 | 174 | 78 | 7 | 87 | 250 | 61 | 219 | 2.59e-27 | 106 |
MS.gene93356.t1 | MTR_5g024070 | 36.719 | 128 | 73 | 2 | 140 | 260 | 188 | 314 | 1.90e-21 | 92.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93356.t1 | AT1G18790 | 62.500 | 128 | 41 | 2 | 141 | 261 | 112 | 239 | 8.20e-50 | 166 |
MS.gene93356.t1 | AT1G74480 | 61.207 | 116 | 40 | 2 | 147 | 257 | 127 | 242 | 6.75e-42 | 146 |
MS.gene93356.t1 | AT5G66990 | 51.128 | 133 | 58 | 2 | 135 | 262 | 142 | 272 | 1.30e-40 | 142 |
MS.gene93356.t1 | AT5G53040 | 53.704 | 108 | 44 | 2 | 154 | 261 | 148 | 249 | 1.12e-30 | 116 |
MS.gene93356.t1 | AT4G35590 | 37.313 | 134 | 72 | 2 | 154 | 280 | 192 | 320 | 6.70e-19 | 85.5 |
MS.gene93356.t1 | AT4G35590 | 38.060 | 134 | 71 | 3 | 154 | 280 | 242 | 370 | 9.28e-19 | 85.9 |
Find 52 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACTTGTACATTCTTTATA+AGG | 0.172964 | 3.2:+26832604 | None:intergenic |
GATTATCATACGTAGAAAAT+TGG | 0.202707 | 3.2:+26833311 | None:intergenic |
TTCAATGATTGGTCACATTA+TGG | 0.214480 | 3.2:-26833145 | MS.gene93356:CDS |
TGATAACCTTCTATGCTTAA+TGG | 0.225802 | 3.2:+26833025 | None:intergenic |
AGAGTTTCATTTCGAAATTC+AGG | 0.227635 | 3.2:+26833073 | None:intergenic |
TTCCATGAAAGGATCAAAAT+TGG | 0.229603 | 3.2:+26833105 | None:intergenic |
TCTCTAGCAGCTTGAGATAT+TGG | 0.323623 | 3.2:+26832717 | None:intergenic |
AAGAAAAGGTGTAGGGATCT+TGG | 0.330015 | 3.2:-26832669 | MS.gene93356:CDS |
TCAATGACAGACTATGGTTA+TGG | 0.334072 | 3.2:-26832936 | MS.gene93356:intron |
GCTCATGGTTATGAGGTTAA+TGG | 0.347444 | 3.2:-26831867 | MS.gene93356:CDS |
TACTTGTACATTCTTTATAA+GGG | 0.359802 | 3.2:+26832605 | None:intergenic |
AGTTGATGCTGGATATTATT+CGG | 0.383233 | 3.2:-26832880 | MS.gene93356:CDS |
GGTGCAGGTACAAGTAATTC+AGG | 0.392094 | 3.2:+26833046 | None:intergenic |
CCTGCACCATTAAGCATAGA+AGG | 0.395032 | 3.2:-26833031 | MS.gene93356:intron |
GGCTTACACATTTGAAGAAA+AGG | 0.415724 | 3.2:-26832683 | MS.gene93356:CDS |
CAATGACAGACTATGGTTAT+GGG | 0.417103 | 3.2:-26832935 | MS.gene93356:intron |
CATTCTTTATAAGGGTTTGA+AGG | 0.417292 | 3.2:+26832613 | None:intergenic |
TATGAGGTTAATGGAACAAC+AGG | 0.443913 | 3.2:-26831858 | MS.gene93356:CDS |
ATCAAAATTGGTATCTTGCA+TGG | 0.445144 | 3.2:+26833117 | None:intergenic |
CTGCTAGAGACCTTAATGTT+GGG | 0.489436 | 3.2:-26832704 | MS.gene93356:CDS |
GAAAGAAATGAAGAAGGTAG+AGG | 0.489935 | 3.2:-26831969 | MS.gene93356:CDS |
ATGAATGTGATGAGAAGATA+AGG | 0.493501 | 3.2:-26832012 | MS.gene93356:CDS |
AATTGGAATGGAGGTTGCAA+TGG | 0.509497 | 3.2:+26833328 | None:intergenic |
GCTTAGACAAGCATGTTTCA+AGG | 0.510842 | 3.2:-26831909 | MS.gene93356:CDS |
CCTTCTATGCTTAATGGTGC+AGG | 0.511925 | 3.2:+26833031 | None:intergenic |
ATTGCAGAAAGAAATGAAGA+AGG | 0.517898 | 3.2:-26831975 | MS.gene93356:CDS |
AGAGAAGGCTCATGGTTATG+AGG | 0.522137 | 3.2:-26831874 | MS.gene93356:CDS |
GCTGCTAGAGACCTTAATGT+TGG | 0.523622 | 3.2:-26832705 | MS.gene93356:CDS |
AATGTGTAAGCCCAACATTA+AGG | 0.530566 | 3.2:+26832694 | None:intergenic |
CACATTTGAAGAAAAGGTGT+AGG | 0.540159 | 3.2:-26832677 | MS.gene93356:CDS |
GAATTCAAAGGTGGCCACAT+AGG | 0.544869 | 3.2:-26832647 | MS.gene93356:CDS |
TCAAAATTGGTATCTTGCAT+GGG | 0.545683 | 3.2:+26833118 | None:intergenic |
ATGTGGAATGAAGTTGATGC+TGG | 0.550987 | 3.2:-26832891 | MS.gene93356:CDS |
TACTGGAGAAAATGTTGCAA+AGG | 0.556786 | 3.2:-26832829 | MS.gene93356:CDS |
AGGCTAATTACAAGAAGAGA+AGG | 0.568624 | 3.2:-26831889 | MS.gene93356:CDS |
AGGCTCATTAGTTTCCTATG+TGG | 0.571114 | 3.2:+26832633 | None:intergenic |
TGTTGCAAAGGAAATTGTGA+AGG | 0.572064 | 3.2:-26832817 | MS.gene93356:CDS |
ACATTTGAAGAAAAGGTGTA+GGG | 0.575896 | 3.2:-26832676 | MS.gene93356:CDS |
TTATTGGTGGTGCAGGAGCA+AGG | 0.586794 | 3.2:-26832037 | MS.gene93356:intron |
TCATATTTCAAAACCGTGAG+TGG | 0.589090 | 3.2:+26833379 | None:intergenic |
AACTTGATGAAAACACAAAG+AGG | 0.589787 | 3.2:-26831931 | MS.gene93356:CDS |
TTACAAGAAGAGAAGGCTCA+TGG | 0.590126 | 3.2:-26831882 | MS.gene93356:CDS |
GTAGGGATCTTGGAATTCAA+AGG | 0.603743 | 3.2:-26832659 | MS.gene93356:CDS |
TACGTAGAAAATTGGAATGG+AGG | 0.603829 | 3.2:+26833319 | None:intergenic |
AATGACAGACTATGGTTATG+GGG | 0.605489 | 3.2:-26832934 | MS.gene93356:intron |
TCATACGTAGAAAATTGGAA+TGG | 0.613632 | 3.2:+26833316 | None:intergenic |
GTTGCAAAGGAAATTGTGAA+GGG | 0.628143 | 3.2:-26832816 | MS.gene93356:CDS |
GCATCAACTTCATTCCACAT+TGG | 0.632538 | 3.2:+26832894 | None:intergenic |
GGAGAATGTTGATCCACTCA+CGG | 0.640251 | 3.2:-26833392 | MS.gene93356:CDS |
TGAGAAGATAAGGAATGCTG+TGG | 0.656309 | 3.2:-26832002 | MS.gene93356:CDS |
GCAGGTACAAGTAATTCAGG+TGG | 0.663503 | 3.2:+26833049 | None:intergenic |
GGGATCTTGGAATTCAAAGG+TGG | 0.676630 | 3.2:-26832656 | MS.gene93356:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTATTTTTATTTTTTTA+CGG | - | chr3.2:26833005-26833024 | MS.gene93356:intron | 0.0% |
!! | AAAGTAAAAAAAATACAAAA+AGG | + | chr3.2:26831969-26831988 | None:intergenic | 10.0% |
!! | CTGTAAAAAAAATAAAAAAT+AGG | + | chr3.2:26832015-26832034 | None:intergenic | 10.0% |
!!! | AATTTATTTATTTTGTTAAC+GGG | - | chr3.2:26832206-26832225 | MS.gene93356:intron | 10.0% |
!!! | AATTTTTAAAGATAATTTCA+TGG | + | chr3.2:26831992-26832011 | None:intergenic | 10.0% |
!!! | ATTTTTTTTACTAATTTTTG+TGG | - | chr3.2:26832942-26832961 | MS.gene93356:intron | 10.0% |
!! | ATTGCAAACTAAAAAAATAT+TGG | + | chr3.2:26832606-26832625 | None:intergenic | 15.0% |
!!! | AGTAAGAATGAAAAATATTT+TGG | + | chr3.2:26832789-26832808 | None:intergenic | 15.0% |
!!! | ATTTATTTATTTTGTTAACG+GGG | - | chr3.2:26832207-26832226 | MS.gene93356:intron | 15.0% |
!!! | TTGAAACGTTTTATTATTAT+TGG | - | chr3.2:26833128-26833147 | MS.gene93356:CDS | 15.0% |
!! | TACTTGTACATTCTTTATAA+GGG | + | chr3.2:26832579-26832598 | None:intergenic | 20.0% |
!! | TTACTTGTACATTCTTTATA+AGG | + | chr3.2:26832580-26832599 | None:intergenic | 20.0% |
!!! | AAACGTTTTATTATTATTGG+TGG | - | chr3.2:26833131-26833150 | MS.gene93356:CDS | 20.0% |
!!! | TTCATTCTTACTTATTTTTG+TGG | - | chr3.2:26832797-26832816 | MS.gene93356:CDS | 20.0% |
!!! | TTTTTTACAGATTCAATGAT+TGG | - | chr3.2:26832025-26832044 | MS.gene93356:CDS | 20.0% |
! | AAAATACAAAAAGGAACTAG+TGG | + | chr3.2:26831960-26831979 | None:intergenic | 25.0% |
! | AATTATTCAATGACAGACTA+TGG | - | chr3.2:26832239-26832258 | MS.gene93356:intron | 25.0% |
! | GATTATCATACGTAGAAAAT+TGG | + | chr3.2:26831873-26831892 | None:intergenic | 25.0% |
!! | AATTCCATCACTAAATTTTG+CGG | - | chr3.2:26832718-26832737 | MS.gene93356:CDS | 25.0% |
!! | GGATAATAATTTTCCATGAA+AGG | + | chr3.2:26832090-26832109 | None:intergenic | 25.0% |
!! | TTAGTGATGGAATTAAAGAT+CGG | + | chr3.2:26832712-26832731 | None:intergenic | 25.0% |
!!! | AATGTGGATTACTTTTTTTG+TGG | - | chr3.2:26832860-26832879 | MS.gene93356:CDS | 25.0% |
!!! | GAATGAAAAATATTTTGGCA+AGG | + | chr3.2:26832784-26832803 | None:intergenic | 25.0% |
!!! | TGTAGTGAATTGTTTTAATG+TGG | - | chr3.2:26832844-26832863 | MS.gene93356:CDS | 25.0% |
!!! | TTACTTTTTTTGTGGCTTTT+TGG | - | chr3.2:26832868-26832887 | MS.gene93356:CDS | 25.0% |
AACTTGATGAAAACACAAAG+AGG | - | chr3.2:26833250-26833269 | MS.gene93356:intron | 30.0% | |
AGAGTTTCATTTCGAAATTC+AGG | + | chr3.2:26832111-26832130 | None:intergenic | 30.0% | |
ATCAAAATTGGTATCTTGCA+TGG | + | chr3.2:26832067-26832086 | None:intergenic | 30.0% | |
ATGAATGTGATGAGAAGATA+AGG | - | chr3.2:26833169-26833188 | MS.gene93356:intron | 30.0% | |
ATTGCAGAAAGAAATGAAGA+AGG | - | chr3.2:26833206-26833225 | MS.gene93356:intron | 30.0% | |
CATTCTTTATAAGGGTTTGA+AGG | + | chr3.2:26832571-26832590 | None:intergenic | 30.0% | |
TCAAAATTGGTATCTTGCAT+GGG | + | chr3.2:26832066-26832085 | None:intergenic | 30.0% | |
TCATACGTAGAAAATTGGAA+TGG | + | chr3.2:26831868-26831887 | None:intergenic | 30.0% | |
TGATAACCTTCTATGCTTAA+TGG | + | chr3.2:26832159-26832178 | None:intergenic | 30.0% | |
TTCCATGAAAGGATCAAAAT+TGG | + | chr3.2:26832079-26832098 | None:intergenic | 30.0% | |
TTGATTTAGCTAGCAAATCA+TGG | + | chr3.2:26833043-26833062 | None:intergenic | 30.0% | |
! | ACATTTGAAGAAAAGGTGTA+GGG | - | chr3.2:26832505-26832524 | MS.gene93356:intron | 30.0% |
! | AGTTGATGCTGGATATTATT+CGG | - | chr3.2:26832301-26832320 | MS.gene93356:intron | 30.0% |
! | TGCAAGCAAATCATGATTTT+AGG | + | chr3.2:26832910-26832929 | None:intergenic | 30.0% |
! | TTCAATGATTGGTCACATTA+TGG | - | chr3.2:26832036-26832055 | MS.gene93356:intron | 30.0% |
! | TTTTCGATTAGCAACATTAC+TGG | - | chr3.2:26832335-26832354 | MS.gene93356:intron | 30.0% |
!! | TACCAATTTTGATCCTTTCA+TGG | - | chr3.2:26832074-26832093 | MS.gene93356:intron | 30.0% |
!! | TGGAATTAAAGATCGGTTTT+AGG | + | chr3.2:26832705-26832724 | None:intergenic | 30.0% |
!! | TTTATTATTATTGGTGGTGC+AGG | - | chr3.2:26833137-26833156 | MS.gene93356:CDS | 30.0% |
!! | TTTTCATCAAGTTGCAAATC+TGG | + | chr3.2:26833243-26833262 | None:intergenic | 30.0% |
AATGACAGACTATGGTTATG+GGG | - | chr3.2:26832247-26832266 | MS.gene93356:intron | 35.0% | |
AATGTGTAAGCCCAACATTA+AGG | + | chr3.2:26832490-26832509 | None:intergenic | 35.0% | |
AGGCTAATTACAAGAAGAGA+AGG | - | chr3.2:26833292-26833311 | MS.gene93356:CDS | 35.0% | |
CAATGACAGACTATGGTTAT+GGG | - | chr3.2:26832246-26832265 | MS.gene93356:intron | 35.0% | |
CATAATCACATTGTGTAGTG+AGG | - | chr3.2:26832659-26832678 | MS.gene93356:CDS | 35.0% | |
CTAAAAATGTGGTTCCAATG+TGG | - | chr3.2:26832273-26832292 | MS.gene93356:intron | 35.0% | |
GAAAGAAATGAAGAAGGTAG+AGG | - | chr3.2:26833212-26833231 | MS.gene93356:intron | 35.0% | |
GGCTTACACATTTGAAGAAA+AGG | - | chr3.2:26832498-26832517 | MS.gene93356:intron | 35.0% | |
GTTGCAAAGGAAATTGTGAA+GGG | - | chr3.2:26832365-26832384 | MS.gene93356:intron | 35.0% | |
TACGTAGAAAATTGGAATGG+AGG | + | chr3.2:26831865-26831884 | None:intergenic | 35.0% | |
TACTGGAGAAAATGTTGCAA+AGG | - | chr3.2:26832352-26832371 | MS.gene93356:intron | 35.0% | |
TATGAGGTTAATGGAACAAC+AGG | - | chr3.2:26833323-26833342 | MS.gene93356:CDS | 35.0% | |
TCAATGACAGACTATGGTTA+TGG | - | chr3.2:26832245-26832264 | MS.gene93356:intron | 35.0% | |
TCATATTTCAAAACCGTGAG+TGG | + | chr3.2:26831805-26831824 | None:intergenic | 35.0% | |
TGTTGCAAAGGAAATTGTGA+AGG | - | chr3.2:26832364-26832383 | MS.gene93356:intron | 35.0% | |
TTATGGGGATGCTAAAAATG+TGG | - | chr3.2:26832262-26832281 | MS.gene93356:intron | 35.0% | |
! | CACATTTGAAGAAAAGGTGT+AGG | - | chr3.2:26832504-26832523 | MS.gene93356:intron | 35.0% |
! | GGCAAGGAAATCATGATTTT+AGG | + | chr3.2:26832768-26832787 | None:intergenic | 35.0% |
!! | TTTTGTGGCTTTTTGGTAAG+CGG | - | chr3.2:26832875-26832894 | MS.gene93356:CDS | 35.0% |
AATTGGAATGGAGGTTGCAA+TGG | + | chr3.2:26831856-26831875 | None:intergenic | 40.0% | |
CAAGCCGCAAAATTTAGTGA+TGG | + | chr3.2:26832725-26832744 | None:intergenic | 40.0% | |
CTGCTAGAGACCTTAATGTT+GGG | - | chr3.2:26832477-26832496 | MS.gene93356:intron | 40.0% | |
GCATCAACTTCATTCCACAT+TGG | + | chr3.2:26832290-26832309 | None:intergenic | 40.0% | |
GCTCATGGTTATGAGGTTAA+TGG | - | chr3.2:26833314-26833333 | MS.gene93356:CDS | 40.0% | |
GCTTAGACAAGCATGTTTCA+AGG | - | chr3.2:26833272-26833291 | MS.gene93356:CDS | 40.0% | |
GTAGGGATCTTGGAATTCAA+AGG | - | chr3.2:26832522-26832541 | MS.gene93356:intron | 40.0% | |
TCTCTAGCAGCTTGAGATAT+TGG | + | chr3.2:26832467-26832486 | None:intergenic | 40.0% | |
TGAGAAGATAAGGAATGCTG+TGG | - | chr3.2:26833179-26833198 | MS.gene93356:intron | 40.0% | |
TTACAAGAAGAGAAGGCTCA+TGG | - | chr3.2:26833299-26833318 | MS.gene93356:CDS | 40.0% | |
! | AAGAAAAGGTGTAGGGATCT+TGG | - | chr3.2:26832512-26832531 | MS.gene93356:intron | 40.0% |
! | AGGCTCATTAGTTTCCTATG+TGG | + | chr3.2:26832551-26832570 | None:intergenic | 40.0% |
! | CATCACTAAATTTTGCGGCT+TGG | - | chr3.2:26832723-26832742 | MS.gene93356:CDS | 40.0% |
!! | ATGTGGAATGAAGTTGATGC+TGG | - | chr3.2:26832290-26832309 | MS.gene93356:intron | 40.0% |
AGAGAAGGCTCATGGTTATG+AGG | - | chr3.2:26833307-26833326 | MS.gene93356:CDS | 45.0% | |
CCTGCACCATTAAGCATAGA+AGG | - | chr3.2:26832150-26832169 | MS.gene93356:intron | 45.0% | |
CCTTCTATGCTTAATGGTGC+AGG | + | chr3.2:26832153-26832172 | None:intergenic | 45.0% | |
GAATTCAAAGGTGGCCACAT+AGG | - | chr3.2:26832534-26832553 | MS.gene93356:intron | 45.0% | |
GCAGGTACAAGTAATTCAGG+TGG | + | chr3.2:26832135-26832154 | None:intergenic | 45.0% | |
GCTGCTAGAGACCTTAATGT+TGG | - | chr3.2:26832476-26832495 | MS.gene93356:intron | 45.0% | |
GGAGAATGTTGATCCACTCA+CGG | - | chr3.2:26831789-26831808 | MS.gene93356:CDS | 45.0% | |
GGGATCTTGGAATTCAAAGG+TGG | - | chr3.2:26832525-26832544 | MS.gene93356:intron | 45.0% | |
GGTGCAGGTACAAGTAATTC+AGG | + | chr3.2:26832138-26832157 | None:intergenic | 45.0% | |
!! | CACTAAATTTTGCGGCTTGG+TGG | - | chr3.2:26832726-26832745 | MS.gene93356:CDS | 45.0% |
!!! | TAATTTATTTATTTTGTTAA+CGG | - | chr3.2:26832205-26832224 | MS.gene93356:intron | 5.0% |
!! | TTATTGGTGGTGCAGGAGCA+AGG | - | chr3.2:26833144-26833163 | MS.gene93356:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 26831787 | 26833416 | 26831787 | ID=MS.gene93356 |
chr3.2 | mRNA | 26831787 | 26833416 | 26831787 | ID=MS.gene93356.t1;Parent=MS.gene93356 |
chr3.2 | exon | 26833268 | 26833416 | 26833268 | ID=MS.gene93356.t1.exon1;Parent=MS.gene93356.t1 |
chr3.2 | CDS | 26833268 | 26833416 | 26833268 | ID=cds.MS.gene93356.t1;Parent=MS.gene93356.t1 |
chr3.2 | exon | 26833032 | 26833168 | 26833032 | ID=MS.gene93356.t1.exon2;Parent=MS.gene93356.t1 |
chr3.2 | CDS | 26833032 | 26833168 | 26833032 | ID=cds.MS.gene93356.t1;Parent=MS.gene93356.t1 |
chr3.2 | exon | 26832608 | 26832948 | 26832608 | ID=MS.gene93356.t1.exon3;Parent=MS.gene93356.t1 |
chr3.2 | CDS | 26832608 | 26832948 | 26832608 | ID=cds.MS.gene93356.t1;Parent=MS.gene93356.t1 |
chr3.2 | exon | 26831787 | 26832044 | 26831787 | ID=MS.gene93356.t1.exon4;Parent=MS.gene93356.t1 |
chr3.2 | CDS | 26831787 | 26832044 | 26831787 | ID=cds.MS.gene93356.t1;Parent=MS.gene93356.t1 |
Gene Sequence |
Protein sequence |