AlfalfaGEDB | MS.gene93409

M. sativa cultivar XinJiangDaYe / MS.gene93409

KEGG: K11644
GO: GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93409.t1	RHN82154.1	94.5	109	6	0	1	109	11	119	1.90E-49	204.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93409.t1	O04539	69.3	75	23	0	2	76	15	89	2.3e-24	112.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93409.t1	A0A072VRE1	94.5	109	6	0	1	109	1	109	1.4e-49	204.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene93409.t1	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93409.t1	MTR_1g105960	94.495	109	6	0	1	109	1	109	2.25e-71	208
MS.gene93409.t1	MTR_1g105955	53.846	117	35	1	2	99	17	133	8.14e-35	118
MS.gene93409.t1	MTR_1g105955	65.217	69	24	0	2	70	96	164	1.62e-24	92.0
MS.gene93409.t1	MTR_8g062700	74.667	75	19	0	2	76	43	117	1.44e-32	119
MS.gene93409.t1	MTR_8g062700	74.667	75	19	0	2	76	43	117	1.47e-32	119
MS.gene93409.t1	MTR_5g036670	66.234	77	26	0	2	78	44	120	4.59e-30	112
MS.gene93409.t1	MTR_6g008970	68.000	75	24	0	2	76	64	138	6.63e-29	109
MS.gene93409.t1	MTR_1g104940	58.974	78	32	0	2	79	15	92	2.97e-26	94.7
MS.gene93409.t1	MTR_6g008995	62.667	75	26	1	2	76	38	110	9.14e-25	97.1
MS.gene93409.t1	MTR_1g104960	52.703	74	35	0	2	75	100	173	4.06e-22	85.5

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93409.t1	AT1G70060	69.333	75	23	2	76	15	89	5.24e-30	112
MS.gene93409.t1	AT1G70060	69.333	75	23	2	76	15	89	5.24e-30	112
MS.gene93409.t1	AT1G24190	69.863	73	22	2	74	15	87	1.10e-29	111
MS.gene93409.t1	AT1G24190	69.863	73	22	2	74	15	87	1.30e-29	111
MS.gene93409.t1	AT1G24190	69.863	73	22	2	74	15	87	1.37e-29	111
MS.gene93409.t1	AT3G01320	68.919	74	23	2	75	58	131	2.00e-28	107
MS.gene93409.t1	AT3G01320	68.919	74	23	2	75	58	131	2.00e-28	107
MS.gene93409.t1	AT5G15020	70.588	68	20	2	69	53	120	3.51e-27	104
MS.gene93409.t1	AT5G15020	70.588	68	20	2	69	53	120	3.90e-27	104
MS.gene93409.t1	AT1G59890	62.667	75	28	2	76	46	120	1.87e-26	102

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Find 15 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTTGATGATGATGAAA+GGG	0.527843	1.1:-76078921	MS.gene93409:CDS
AAATGTTATGAAAGAATTCA+AGG	0.402015	1.1:-76079059	MS.gene93409:CDS
ACAGCTCCTTCACTCTTTCG+AGG	0.437658	1.1:+76079011	None:intergenic
AGAGTGAAGGAGCTGTTTAA+AGG	0.388525	1.1:-76079004	MS.gene93409:CDS
AGTCGAGTTTCAAGATGAGA+TGG	0.542797	1.1:-76079101	MS.gene93409:CDS
ATGAGGGATTTCAAGGCTCT+CGG	0.525498	1.1:-76078872	MS.gene93409:CDS
CAAACGTTGATGATGATGAA+AGG	0.538856	1.1:-76078922	MS.gene93409:CDS
GAAAGTTATGAGGGATTTCA+AGG	0.411631	1.1:-76078879	MS.gene93409:CDS
GAGTGAAGGAGCTGTTTAAA+GGG	0.499135	1.1:-76079003	MS.gene93409:CDS
GCTAGGAGAATTGATACAAG+TGG	0.644745	1.1:-76079037	MS.gene93409:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATGAAAGAATTCAAGGCT+AGG	-	chr1.1:76078899-76078918	MS.gene93409:CDS	30.0%
GAAAGTTATGAGGGATTTCA+AGG	-	chr1.1:76079074-76079093	MS.gene93409:CDS	35.0%
TCTCGGAATTGACAATGAAA+TGG	-	chr1.1:76079098-76079117	MS.gene93409:CDS	35.0%
AGAGTGAAGGAGCTGTTTAA+AGG	-	chr1.1:76078949-76078968	MS.gene93409:CDS	40.0%
AGTCGAGTTTCAAGATGAGA+TGG	-	chr1.1:76078852-76078871	MS.gene93409:CDS	40.0%
GAGTGAAGGAGCTGTTTAAA+GGG	-	chr1.1:76078950-76078969	MS.gene93409:CDS	40.0%
GCTAGGAGAATTGATACAAG+TGG	-	chr1.1:76078916-76078935	MS.gene93409:CDS	40.0%
ATGAGGGATTTCAAGGCTCT+CGG	-	chr1.1:76079081-76079100	MS.gene93409:CDS	45.0%
TTCAACACCTTCCTGCCAAA+AGG	-	chr1.1:76078994-76079013	MS.gene93409:CDS	45.0%
ACAGCTCCTTCACTCTTTCG+AGG	+	chr1.1:76078945-76078964	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	76078823	76079152	76078823	ID=MS.gene93409
chr1.1	mRNA	76078823	76079152	76078823	ID=MS.gene93409.t1;Parent=MS.gene93409
chr1.1	exon	76078823	76079152	76078823	ID=MS.gene93409.t1.exon1;Parent=MS.gene93409.t1
chr1.1	CDS	76078823	76079152	76078823	ID=cds.MS.gene93409.t1;Parent=MS.gene93409.t1

Gene Sequence	>MS.gene93409 ATGGCACTAGCATATCTGAAAGCAGTAAGAGTCGAGTTTCAAGATGAGATGGAAAAGTATGATGAATTTTTAAATGTTATGAAAGAATTCAAGGCTAGGAGAATTGATACAAGTGGTGTCCTCGAAAGAGTGAAGGAGCTGTTTAAAGGGCATAAAAATTTAATCTTGGGATTCAACACCTTCCTGCCAAAAGGATATGAAATCAGTACAAACGTTGATGATGATGAAAGGGAAAATTATGATGAATTTTTGAAAGTTATGAGGGATTTCAAGGCTCTCGGAATTGACAATGAAATGGAGCAGATTGTTCAACTTTTGTCACGTCTATGA
Protein sequence	>MS.gene93409.t1 MALAYLKAVRVEFQDEMEKYDEFLNVMKEFKARRIDTSGVLERVKELFKGHKNLILGFNTFLPKGYEISTNVDDDERENYDEFLKVMRDFKALGIDNEMEQIVQLLSRL