Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93410.t1 | KEH43987.1 | 90.8 | 163 | 15 | 0 | 1 | 163 | 1 | 163 | 1.20E-78 | 302.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93410.t1 | Q9LFQ3 | 41.4 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 2.2e-25 | 117.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93410.t1 | A0A072VQC1 | 90.8 | 163 | 15 | 0 | 1 | 163 | 1 | 163 | 8.6e-79 | 302.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene93410.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93410.t1 | MTR_1g105955 | 90.854 | 164 | 15 | 0 | 1 | 164 | 1 | 164 | 2.54e-110 | 313 |
MS.gene93410.t1 | MTR_3g006150 | 46.452 | 155 | 73 | 3 | 13 | 160 | 5 | 156 | 1.40e-32 | 115 |
MS.gene93410.t1 | MTR_3g006150 | 46.835 | 79 | 38 | 2 | 96 | 173 | 9 | 84 | 2.69e-12 | 62.4 |
MS.gene93410.t1 | MTR_5g036670 | 44.079 | 152 | 78 | 2 | 13 | 157 | 40 | 191 | 1.12e-31 | 121 |
MS.gene93410.t1 | MTR_5g036670 | 51.351 | 74 | 36 | 0 | 96 | 169 | 44 | 117 | 8.75e-17 | 78.2 |
MS.gene93410.t1 | MTR_3g006065 | 48.387 | 155 | 70 | 4 | 13 | 160 | 5 | 156 | 1.13e-31 | 113 |
MS.gene93410.t1 | MTR_1g105960 | 49.573 | 117 | 40 | 1 | 17 | 133 | 2 | 99 | 1.45e-31 | 110 |
MS.gene93410.t1 | MTR_1g105960 | 62.195 | 82 | 30 | 1 | 96 | 177 | 2 | 82 | 8.85e-27 | 98.6 |
MS.gene93410.t1 | MTR_1g104960 | 38.372 | 172 | 98 | 2 | 5 | 168 | 2 | 173 | 2.45e-31 | 112 |
MS.gene93410.t1 | MTR_1g104960 | 40.964 | 83 | 49 | 0 | 92 | 174 | 10 | 92 | 3.73e-12 | 62.4 |
MS.gene93410.t1 | MTR_3g006185 | 41.718 | 163 | 83 | 2 | 13 | 163 | 5 | 167 | 7.93e-30 | 108 |
MS.gene93410.t1 | MTR_3g006125 | 40.116 | 172 | 78 | 3 | 13 | 165 | 86 | 251 | 1.35e-29 | 110 |
MS.gene93410.t1 | MTR_3g006125 | 46.914 | 81 | 42 | 1 | 9 | 88 | 173 | 253 | 1.93e-15 | 72.8 |
MS.gene93410.t1 | MTR_8g062700 | 40.881 | 159 | 87 | 2 | 6 | 157 | 32 | 190 | 2.44e-29 | 114 |
MS.gene93410.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 5.52e-19 | 84.7 |
MS.gene93410.t1 | MTR_8g062700 | 40.881 | 159 | 87 | 2 | 6 | 157 | 32 | 190 | 2.46e-29 | 114 |
MS.gene93410.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 5.58e-19 | 84.7 |
MS.gene93410.t1 | MTR_4g133300 | 40.506 | 158 | 80 | 2 | 15 | 163 | 88 | 240 | 3.35e-29 | 108 |
MS.gene93410.t1 | MTR_4g133300 | 42.000 | 150 | 79 | 3 | 17 | 163 | 13 | 157 | 4.60e-25 | 98.2 |
MS.gene93410.t1 | MTR_4g133300 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 3.03e-11 | 60.8 |
MS.gene93410.t1 | MTR_1g104980 | 37.975 | 158 | 89 | 2 | 18 | 174 | 1 | 150 | 3.67e-29 | 107 |
MS.gene93410.t1 | MTR_1g104980 | 37.975 | 79 | 48 | 1 | 10 | 88 | 65 | 142 | 6.18e-11 | 58.9 |
MS.gene93410.t1 | MTR_6g008970 | 41.558 | 154 | 79 | 3 | 13 | 157 | 60 | 211 | 1.15e-28 | 112 |
MS.gene93410.t1 | MTR_6g008970 | 50.667 | 75 | 37 | 0 | 96 | 170 | 64 | 138 | 4.78e-17 | 79.0 |
MS.gene93410.t1 | MTR_4g133470 | 39.873 | 158 | 81 | 2 | 15 | 163 | 88 | 240 | 3.50e-28 | 106 |
MS.gene93410.t1 | MTR_4g133470 | 42.000 | 150 | 79 | 3 | 17 | 163 | 13 | 157 | 1.16e-24 | 97.1 |
MS.gene93410.t1 | MTR_4g133470 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 2.75e-11 | 61.2 |
MS.gene93410.t1 | MTR_3g006105 | 41.463 | 164 | 83 | 4 | 13 | 163 | 5 | 168 | 1.01e-26 | 100 |
MS.gene93410.t1 | MTR_3g006105 | 45.783 | 83 | 44 | 1 | 96 | 177 | 9 | 91 | 1.62e-12 | 63.5 |
MS.gene93410.t1 | MTR_6g008995 | 40.667 | 150 | 84 | 1 | 13 | 157 | 34 | 183 | 2.92e-26 | 104 |
MS.gene93410.t1 | MTR_1g109550 | 44.961 | 129 | 64 | 3 | 19 | 145 | 19 | 142 | 8.08e-26 | 97.4 |
MS.gene93410.t1 | MTR_1g109550 | 50.685 | 73 | 35 | 1 | 92 | 164 | 13 | 84 | 2.54e-17 | 75.1 |
MS.gene93410.t1 | MTR_7g013410 | 35.915 | 142 | 85 | 2 | 20 | 157 | 2 | 141 | 8.79e-22 | 86.7 |
MS.gene93410.t1 | MTR_1g105010 | 51.852 | 81 | 39 | 0 | 1 | 81 | 1 | 81 | 8.15e-21 | 83.6 |
MS.gene93410.t1 | MTR_1g105010 | 38.462 | 104 | 59 | 1 | 92 | 195 | 13 | 111 | 3.70e-17 | 74.3 |
MS.gene93410.t1 | MTR_7g013380 | 35.484 | 155 | 91 | 3 | 17 | 162 | 100 | 254 | 3.29e-20 | 86.3 |
MS.gene93410.t1 | MTR_7g013380 | 32.967 | 182 | 110 | 5 | 1 | 173 | 1 | 179 | 2.39e-19 | 84.0 |
MS.gene93410.t1 | MTR_7g089490 | 46.988 | 83 | 44 | 0 | 1 | 83 | 1 | 83 | 3.72e-19 | 79.3 |
MS.gene93410.t1 | MTR_6g008995 | 40.000 | 125 | 70 | 1 | 38 | 157 | 2 | 126 | 6.76e-19 | 83.6 |
MS.gene93410.t1 | MTR_1g104940 | 52.055 | 73 | 35 | 0 | 16 | 88 | 14 | 86 | 1.39e-18 | 77.8 |
MS.gene93410.t1 | MTR_1g104940 | 44.792 | 96 | 50 | 1 | 95 | 187 | 14 | 109 | 2.07e-17 | 75.1 |
MS.gene93410.t1 | MTR_8g062350 | 29.293 | 198 | 88 | 3 | 9 | 157 | 7 | 201 | 4.64e-16 | 73.6 |
MS.gene93410.t1 | MTR_8g062350 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 8.42e-12 | 62.0 |
MS.gene93410.t1 | MTR_1g104937 | 45.205 | 73 | 40 | 0 | 16 | 88 | 12 | 84 | 4.45e-14 | 65.9 |
MS.gene93410.t1 | MTR_1g104937 | 45.000 | 80 | 44 | 0 | 95 | 174 | 12 | 91 | 1.65e-12 | 61.6 |
MS.gene93410.t1 | MTR_1g091047 | 49.180 | 61 | 30 | 1 | 98 | 157 | 12 | 72 | 2.65e-13 | 62.8 |
MS.gene93410.t1 | MTR_1g093310 | 50.000 | 62 | 25 | 1 | 18 | 79 | 11 | 66 | 2.81e-13 | 62.8 |
MS.gene93410.t1 | MTR_2g097830 | 41.584 | 101 | 56 | 1 | 69 | 169 | 44 | 141 | 1.85e-12 | 63.2 |
MS.gene93410.t1 | MTR_2g097830 | 39.806 | 103 | 54 | 3 | 15 | 114 | 69 | 166 | 6.70e-12 | 61.6 |
MS.gene93410.t1 | MTR_3g006000 | 49.351 | 77 | 34 | 4 | 13 | 87 | 4 | 77 | 2.64e-12 | 60.5 |
MS.gene93410.t1 | MTR_3g006000 | 51.852 | 54 | 26 | 0 | 111 | 164 | 24 | 77 | 7.88e-12 | 59.3 |
MS.gene93410.t1 | MTR_3g006010 | 46.479 | 71 | 37 | 1 | 93 | 162 | 6 | 76 | 7.51e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93410.t1 | AT1G24190 | 41.935 | 155 | 77 | 4 | 13 | 157 | 11 | 162 | 1.54e-30 | 117 |
MS.gene93410.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 8.66e-18 | 81.3 |
MS.gene93410.t1 | AT1G24190 | 41.935 | 155 | 77 | 4 | 13 | 157 | 11 | 162 | 1.77e-30 | 117 |
MS.gene93410.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.61e-18 | 81.3 |
MS.gene93410.t1 | AT1G24190 | 41.935 | 155 | 77 | 4 | 13 | 157 | 11 | 162 | 1.79e-30 | 117 |
MS.gene93410.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.43e-18 | 81.3 |
MS.gene93410.t1 | AT3G01320 | 41.722 | 151 | 82 | 2 | 13 | 157 | 54 | 204 | 4.08e-30 | 116 |
MS.gene93410.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.32e-18 | 82.8 |
MS.gene93410.t1 | AT3G01320 | 41.722 | 151 | 82 | 2 | 13 | 157 | 54 | 204 | 4.36e-30 | 116 |
MS.gene93410.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.27e-18 | 82.8 |
MS.gene93410.t1 | AT1G24230 | 35.119 | 168 | 94 | 3 | 13 | 179 | 11 | 164 | 9.95e-30 | 110 |
MS.gene93410.t1 | AT1G24230 | 26.846 | 149 | 99 | 3 | 13 | 154 | 83 | 228 | 1.65e-13 | 67.4 |
MS.gene93410.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 1.04e-29 | 115 |
MS.gene93410.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 3.97e-17 | 79.3 |
MS.gene93410.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 1.07e-29 | 115 |
MS.gene93410.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.05e-17 | 79.3 |
MS.gene93410.t1 | AT1G70060 | 40.373 | 161 | 84 | 2 | 7 | 157 | 5 | 163 | 4.15e-29 | 114 |
MS.gene93410.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.66e-18 | 82.8 |
MS.gene93410.t1 | AT1G70060 | 40.373 | 161 | 84 | 2 | 7 | 157 | 5 | 163 | 4.15e-29 | 114 |
MS.gene93410.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.66e-18 | 82.8 |
MS.gene93410.t1 | AT1G24200 | 38.000 | 150 | 89 | 1 | 12 | 157 | 10 | 159 | 2.43e-28 | 105 |
MS.gene93410.t1 | AT1G24200 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 1.53e-14 | 69.3 |
MS.gene93410.t1 | AT1G27260 | 36.538 | 156 | 84 | 2 | 14 | 156 | 1 | 154 | 7.47e-27 | 102 |
MS.gene93410.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.17e-25 | 103 |
MS.gene93410.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.43e-12 | 65.9 |
MS.gene93410.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.17e-25 | 103 |
MS.gene93410.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.43e-12 | 65.9 |
MS.gene93410.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 72 | 230 | 1.38e-25 | 103 |
MS.gene93410.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 85 | 152 | 1.36e-12 | 66.2 |
MS.gene93410.t1 | AT1G59890 | 40.397 | 151 | 75 | 3 | 17 | 157 | 46 | 191 | 5.74e-25 | 102 |
MS.gene93410.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.55e-15 | 73.6 |
MS.gene93410.t1 | AT1G59890 | 40.397 | 151 | 75 | 3 | 17 | 157 | 46 | 191 | 5.85e-25 | 102 |
MS.gene93410.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.65e-15 | 73.6 |
MS.gene93410.t1 | AT1G59890 | 40.397 | 151 | 75 | 3 | 17 | 157 | 46 | 191 | 5.97e-25 | 102 |
MS.gene93410.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.55e-15 | 73.6 |
MS.gene93410.t1 | AT1G59890 | 40.397 | 151 | 75 | 3 | 17 | 157 | 46 | 191 | 6.27e-25 | 101 |
MS.gene93410.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.55e-15 | 73.6 |
MS.gene93410.t1 | AT1G70030 | 36.424 | 151 | 89 | 2 | 13 | 157 | 8 | 157 | 3.29e-23 | 91.3 |
MS.gene93410.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 15 | 82 | 4.85e-13 | 64.3 |
MS.gene93410.t1 | AT1G24250 | 29.843 | 191 | 105 | 3 | 1 | 164 | 1 | 189 | 4.88e-21 | 87.8 |
MS.gene93410.t1 | AT1G23810 | 32.184 | 174 | 102 | 3 | 7 | 164 | 5 | 178 | 1.09e-20 | 86.7 |
MS.gene93410.t1 | AT5G15025 | 57.353 | 68 | 29 | 0 | 13 | 80 | 44 | 111 | 1.24e-19 | 80.9 |
MS.gene93410.t1 | AT5G15025 | 42.857 | 77 | 44 | 0 | 94 | 170 | 46 | 122 | 3.93e-14 | 66.2 |
MS.gene93410.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 2.45e-18 | 76.3 |
MS.gene93410.t1 | AT5G15040 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.69e-13 | 62.4 |
MS.gene93410.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 2.45e-18 | 76.3 |
MS.gene93410.t1 | AT5G15040 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.69e-13 | 62.4 |
MS.gene93410.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 2.45e-18 | 76.3 |
MS.gene93410.t1 | AT5G15040 | 43.038 | 79 | 45 | 0 | 93 | 171 | 1 | 79 | 5.69e-13 | 62.4 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 3.88e-18 | 82.4 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.63e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 4.03e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.72e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 4.21e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.93e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 4.21e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 4.93e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 4.59e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.27e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 238 | 303 | 4.60e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 241 | 314 | 5.23e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 4.84e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.60e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 5.22e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.10e-15 | 73.2 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 5.40e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.19e-15 | 72.8 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 5.40e-18 | 82.0 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.19e-15 | 72.8 |
MS.gene93410.t1 | AT4G12020 | 58.209 | 67 | 27 | 1 | 13 | 79 | 305 | 370 | 7.97e-18 | 81.3 |
MS.gene93410.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 8.63e-15 | 72.4 |
MS.gene93410.t1 | AT1G70030 | 36.800 | 125 | 71 | 2 | 1 | 117 | 7 | 131 | 1.49e-16 | 73.2 |
MS.gene93410.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 2.38e-13 | 64.7 |
MS.gene93410.t1 | AT1G27250 | 42.500 | 80 | 44 | 1 | 2 | 79 | 5 | 84 | 7.29e-16 | 71.2 |
MS.gene93410.t1 | AT1G27250 | 42.857 | 77 | 44 | 0 | 86 | 162 | 12 | 88 | 1.12e-12 | 62.8 |
MS.gene93410.t1 | AT1G70030 | 39.394 | 99 | 54 | 1 | 13 | 105 | 19 | 117 | 8.27e-16 | 70.9 |
MS.gene93410.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 1.45e-13 | 65.1 |
MS.gene93410.t1 | AT1G27220 | 47.945 | 73 | 36 | 1 | 9 | 79 | 5 | 77 | 2.44e-15 | 71.2 |
MS.gene93410.t1 | AT1G27220 | 42.308 | 78 | 45 | 0 | 86 | 163 | 5 | 82 | 3.44e-13 | 65.5 |
MS.gene93410.t1 | AT1G27270 | 34.146 | 164 | 84 | 3 | 15 | 156 | 13 | 174 | 6.75e-15 | 70.9 |
MS.gene93410.t1 | AT1G27280 | 29.371 | 143 | 92 | 1 | 28 | 161 | 5 | 147 | 1.80e-13 | 67.0 |
MS.gene93410.t1 | AT1G27280 | 39.394 | 66 | 40 | 0 | 13 | 78 | 78 | 143 | 2.75e-11 | 60.8 |
MS.gene93410.t1 | AT1G27240 | 39.437 | 71 | 43 | 0 | 12 | 82 | 10 | 80 | 1.01e-12 | 64.3 |
MS.gene93410.t1 | AT1G24210 | 39.726 | 73 | 44 | 0 | 13 | 85 | 11 | 83 | 9.44e-11 | 58.2 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATTTGTGAAAGCTATTA+AGG | 0.207434 | 1.1:+76076292 | MS.gene93410:CDS |
AGATTGAAGGATTTGTTTAA+AGG | 0.287517 | 1.1:+76076119 | MS.gene93410:CDS |
TAATCAAACTTGCTCCCTTT+TGG | 0.325065 | 1.1:-76076179 | None:intergenic |
AAAGGGAGCAAGTTTGATTA+TGG | 0.329129 | 1.1:+76076182 | MS.gene93410:CDS |
GTACTGATTTGATATTTCTT+TGG | 0.342104 | 1.1:-76076416 | None:intergenic |
AGAGTGAAGGAACTATTTAA+AGG | 0.356818 | 1.1:+76076356 | MS.gene93410:CDS |
GATTGAAGGATTTGTTTAAA+GGG | 0.359025 | 1.1:+76076120 | MS.gene93410:CDS |
AAATATTATGATGGATTTCA+AGG | 0.386292 | 1.1:+76076064 | MS.gene93410:CDS |
GCTTCTTCCAACACTCCAAA+TGG | 0.411742 | 1.1:-76076212 | None:intergenic |
GGGCATACAAATTTAACGTT+GGG | 0.437947 | 1.1:+76076377 | MS.gene93410:CDS |
GATTATGGCATAGATCCATT+TGG | 0.439528 | 1.1:+76076197 | MS.gene93410:CDS |
TTCAACATCTTCGTGCCAAA+AGG | 0.444915 | 1.1:+76076164 | MS.gene93410:CDS |
GAGTGAAGGAACTATTTAAA+GGG | 0.467701 | 1.1:+76076357 | MS.gene93410:CDS |
CATAGATCCATTTGGAGTGT+TGG | 0.482305 | 1.1:+76076205 | MS.gene93410:CDS |
TATCAAATCAGTACTGATGA+TGG | 0.498943 | 1.1:+76076425 | MS.gene93410:CDS |
TCAACATCTTCGTGCCAAAA+GGG | 0.534332 | 1.1:+76076165 | MS.gene93410:CDS |
TCCATGAGACATGTTATCGC+TGG | 0.536428 | 1.1:-76075952 | None:intergenic |
TGGTGTCATAGCAAGATTGA+AGG | 0.543726 | 1.1:+76076106 | MS.gene93410:CDS |
AGGGCATACAAATTTAACGT+TGG | 0.547701 | 1.1:+76076376 | MS.gene93410:CDS |
TCCAGCGATAACATGTCTCA+TGG | 0.552003 | 1.1:+76075951 | MS.gene93410:CDS |
AGTTGAGTTTCAATATGAGA+GGG | 0.554210 | 1.1:+76076259 | MS.gene93410:CDS |
TGACGTAGAAGCAGAAGACA+TGG | 0.554579 | 1.1:+76076505 | MS.gene93410:CDS |
GCTATTGCTTCTTCCATCGT+GGG | 0.554911 | 1.1:-76075981 | None:intergenic |
GAAAGCTATTAAGGATTGCA+AGG | 0.560574 | 1.1:+76076301 | MS.gene93410:CDS |
TGCTATTGCTTCTTCCATCG+TGG | 0.562428 | 1.1:-76075982 | None:intergenic |
AAGTTGAGTTTCAATATGAG+AGG | 0.581901 | 1.1:+76076258 | MS.gene93410:CDS |
AGAAGCAGAAGACATGGAAG+TGG | 0.582532 | 1.1:+76076511 | MS.gene93410:CDS |
ATGTCTCGCGAAAAGAGTGA+AGG | 0.647795 | 1.1:+76076343 | MS.gene93410:CDS |
GCTATGAAAATTGATACAAG+TGG | 0.667045 | 1.1:+76076086 | MS.gene93410:CDS |
AGAAGCAATAGCATATGTCG+AGG | 0.681954 | 1.1:+76075992 | MS.gene93410:CDS |
TCATGGAGAAGTTCCCACGA+TGG | 0.689488 | 1.1:+76075968 | MS.gene93410:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAATTTTTAAATATTATGA+TGG | + | chr1.1:76076055-76076074 | MS.gene93410:CDS | 10.0% |
!!! | AAATATTATGATGGATTTCA+AGG | + | chr1.1:76076064-76076083 | MS.gene93410:CDS | 20.0% |
! | TGAATTTGTGAAAGCTATTA+AGG | + | chr1.1:76076292-76076311 | MS.gene93410:CDS | 25.0% |
!! | AGATTGAAGGATTTGTTTAA+AGG | + | chr1.1:76076119-76076138 | MS.gene93410:CDS | 25.0% |
!! | GATTGAAGGATTTGTTTAAA+GGG | + | chr1.1:76076120-76076139 | MS.gene93410:CDS | 25.0% |
!!! | GTACTGATTTGATATTTCTT+TGG | - | chr1.1:76076419-76076438 | None:intergenic | 25.0% |
AAGTTGAGTTTCAATATGAG+AGG | + | chr1.1:76076258-76076277 | MS.gene93410:CDS | 30.0% | |
AGAGTGAAGGAACTATTTAA+AGG | + | chr1.1:76076356-76076375 | MS.gene93410:CDS | 30.0% | |
AGTTGAGTTTCAATATGAGA+GGG | + | chr1.1:76076259-76076278 | MS.gene93410:CDS | 30.0% | |
GAGTGAAGGAACTATTTAAA+GGG | + | chr1.1:76076357-76076376 | MS.gene93410:CDS | 30.0% | |
GCTATGAAAATTGATACAAG+TGG | + | chr1.1:76076086-76076105 | MS.gene93410:CDS | 30.0% | |
!! | GGGCACACAAATTTAATTTT+AGG | + | chr1.1:76076140-76076159 | MS.gene93410:CDS | 30.0% |
!! | TATCAAATCAGTACTGATGA+TGG | + | chr1.1:76076425-76076444 | MS.gene93410:CDS | 30.0% |
AAAGGGAGCAAGTTTGATTA+TGG | + | chr1.1:76076182-76076201 | MS.gene93410:CDS | 35.0% | |
AGGGCATACAAATTTAACGT+TGG | + | chr1.1:76076376-76076395 | MS.gene93410:CDS | 35.0% | |
GAAAGCTATTAAGGATTGCA+AGG | + | chr1.1:76076301-76076320 | MS.gene93410:CDS | 35.0% | |
GATTATGGCATAGATCCATT+TGG | + | chr1.1:76076197-76076216 | MS.gene93410:CDS | 35.0% | |
GGGCATACAAATTTAACGTT+GGG | + | chr1.1:76076377-76076396 | MS.gene93410:CDS | 35.0% | |
! | GAAACTCAACTTTTACTGCA+TGG | - | chr1.1:76076250-76076269 | None:intergenic | 35.0% |
!! | TAATCAAACTTGCTCCCTTT+TGG | - | chr1.1:76076182-76076201 | None:intergenic | 35.0% |
AGAAGCAATAGCATATGTCG+AGG | + | chr1.1:76075992-76076011 | MS.gene93410:CDS | 40.0% | |
TCAACATCTTCGTGCCAAAA+GGG | + | chr1.1:76076165-76076184 | MS.gene93410:CDS | 40.0% | |
TTCAACATCTTCGTGCCAAA+AGG | + | chr1.1:76076164-76076183 | MS.gene93410:CDS | 40.0% | |
! | CATAGATCCATTTGGAGTGT+TGG | + | chr1.1:76076205-76076224 | MS.gene93410:CDS | 40.0% |
!! | TGGTGTCATAGCAAGATTGA+AGG | + | chr1.1:76076106-76076125 | MS.gene93410:CDS | 40.0% |
AGAAGCAGAAGACATGGAAG+TGG | + | chr1.1:76076511-76076530 | MS.gene93410:CDS | 45.0% | |
ATGTCTCGCGAAAAGAGTGA+AGG | + | chr1.1:76076343-76076362 | MS.gene93410:CDS | 45.0% | |
GCTATTGCTTCTTCCATCGT+GGG | - | chr1.1:76075984-76076003 | None:intergenic | 45.0% | |
GCTTCTTCCAACACTCCAAA+TGG | - | chr1.1:76076215-76076234 | None:intergenic | 45.0% | |
TCCAGCGATAACATGTCTCA+TGG | + | chr1.1:76075951-76075970 | MS.gene93410:CDS | 45.0% | |
TCCATGAGACATGTTATCGC+TGG | - | chr1.1:76075955-76075974 | None:intergenic | 45.0% | |
TGACGTAGAAGCAGAAGACA+TGG | + | chr1.1:76076505-76076524 | MS.gene93410:CDS | 45.0% | |
TGCTATTGCTTCTTCCATCG+TGG | - | chr1.1:76075985-76076004 | None:intergenic | 45.0% | |
TCATGGAGAAGTTCCCACGA+TGG | + | chr1.1:76075968-76075987 | MS.gene93410:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 76075948 | 76076538 | 76075948 | ID=MS.gene93410 |
chr1.1 | mRNA | 76075948 | 76076538 | 76075948 | ID=MS.gene93410.t1;Parent=MS.gene93410 |
chr1.1 | exon | 76075948 | 76076538 | 76075948 | ID=MS.gene93410.t1.exon1;Parent=MS.gene93410.t1 |
chr1.1 | CDS | 76075948 | 76076538 | 76075948 | ID=cds.MS.gene93410.t1;Parent=MS.gene93410.t1 |
Gene Sequence |
Protein sequence |