AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93414

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93414.t1 MTR_2g105290 74.706 170 43 0 1 170 1 170 4.68e-92 265
MS.gene93414.t1 MTR_8g086290 73.653 167 44 0 1 167 1 167 1.56e-89 259
MS.gene93414.t1 MTR_4g127140 71.111 180 42 2 1 170 1 180 4.39e-79 233
MS.gene93414.t1 MTR_7g028448 77.019 161 29 2 1 161 1 153 2.27e-76 226
MS.gene93414.t1 MTR_4g036915 77.019 161 29 2 1 161 1 153 2.27e-76 226
MS.gene93414.t1 MTR_1g106070 41.176 170 90 2 8 170 5 171 2.09e-42 140
MS.gene93414.t1 MTR_3g052920 42.353 170 88 2 8 170 5 171 1.95e-41 139
MS.gene93414.t1 MTR_1g105910 41.765 170 89 2 8 170 5 171 2.41e-41 139
MS.gene93414.t1 MTR_8g043650 41.765 170 89 2 8 170 5 171 2.87e-41 139
MS.gene93414.t1 MTR_1g105920 41.176 170 90 2 8 170 5 171 3.26e-41 139
MS.gene93414.t1 MTR_1g012570 41.765 170 89 2 8 170 5 171 1.07e-40 137
MS.gene93414.t1 MTR_2g030740 41.176 170 90 2 8 170 5 171 2.71e-40 136
MS.gene93414.t1 MTR_3g080940 41.420 169 95 1 6 170 3 171 4.19e-39 132
MS.gene93414.t1 MTR_1g108510 42.857 168 80 5 8 165 5 166 1.18e-36 127
MS.gene93414.t1 MTR_3g030770 41.212 165 87 2 8 165 5 166 7.85e-36 124
MS.gene93414.t1 MTR_1g108580 40.000 165 89 2 8 165 5 166 1.04e-34 122
MS.gene93414.t1 MTR_3g052870 45.600 125 58 2 8 125 5 126 1.02e-33 119
MS.gene93414.t1 MTR_5g053390 40.698 172 88 4 8 170 5 171 1.53e-33 119
MS.gene93414.t1 MTR_0121s0080 41.139 158 83 2 8 158 5 159 9.45e-33 117
MS.gene93414.t1 MTR_2g093190 40.000 165 89 2 8 165 5 166 1.47e-32 116
MS.gene93414.t1 MTR_1g105905 38.854 157 86 2 21 170 1 154 4.71e-32 114
MS.gene93414.t1 MTR_1g077360 39.394 165 90 2 8 165 5 166 1.09e-31 114
MS.gene93414.t1 MTR_2g085280 38.012 171 94 3 8 170 5 171 3.12e-31 113
MS.gene93414.t1 MTR_2g085250 38.012 171 94 3 8 170 5 171 3.12e-31 113
MS.gene93414.t1 MTR_5g045560 36.970 165 100 1 8 168 5 169 9.81e-31 112
MS.gene93414.t1 MTR_1g075600 39.130 161 88 3 8 161 5 162 5.15e-30 110
MS.gene93414.t1 MTR_0121s0100 46.154 117 53 2 8 117 5 118 3.49e-29 104
MS.gene93414.t1 MTR_5g055100 35.465 172 97 3 8 170 5 171 7.23e-28 104
MS.gene93414.t1 MTR_3g030780 60.274 73 29 0 8 80 5 77 2.02e-27 100
MS.gene93414.t1 MTR_8g046350 40.000 130 75 3 12 139 2 130 7.35e-27 99.8
MS.gene93414.t1 MTR_1g047550 42.718 103 57 1 12 112 2 104 5.51e-25 95.5
MS.gene93414.t1 MTR_4g131030 38.971 136 75 4 12 142 2 134 8.97e-25 95.9
MS.gene93414.t1 MTR_8g079502 40.909 110 63 1 12 119 2 111 3.50e-24 93.6
MS.gene93414.t1 MTR_8g051580 39.167 120 70 2 12 128 2 121 3.94e-24 93.2
MS.gene93414.t1 MTR_1g054265 43.396 106 54 2 12 113 2 105 7.88e-24 92.0
MS.gene93414.t1 MTR_7g062350 37.671 146 81 2 28 166 37 179 9.44e-24 94.0
MS.gene93414.t1 MTR_8g022970 36.025 161 96 4 4 161 14 170 2.71e-22 88.6
MS.gene93414.t1 MTR_4g094632 43.750 96 53 1 12 107 2 96 5.59e-22 87.0
MS.gene93414.t1 MTR_3g067875 60.714 56 22 0 21 76 1 56 2.66e-21 82.8
MS.gene93414.t1 MTR_4g094638 45.000 80 44 0 12 91 2 81 5.70e-21 85.1
MS.gene93414.t1 MTR_1g063160 37.815 119 67 3 12 125 2 118 1.60e-20 84.0
MS.gene93414.t1 MTR_3g109930 38.732 142 84 3 23 161 12 153 3.74e-20 82.8
MS.gene93414.t1 MTR_3g067870 57.377 61 26 0 19 79 83 143 1.49e-19 80.9
MS.gene93414.t1 MTR_1g108500 68.000 50 16 0 25 74 110 159 1.86e-18 81.3
MS.gene93414.t1 MTR_3g005530 50.704 71 35 0 12 82 2 72 2.12e-18 79.3
MS.gene93414.t1 MTR_2g017865 42.553 94 51 1 3 96 8 98 2.25e-18 80.1
MS.gene93414.t1 MTR_6g464720 34.940 166 87 6 12 168 2 155 2.71e-18 79.7
MS.gene93414.t1 MTR_3g437790 35.000 140 82 3 29 161 30 167 3.55e-18 77.8
MS.gene93414.t1 MTR_5g066180 48.529 68 35 0 12 79 2 69 4.76e-18 78.6
MS.gene93414.t1 MTR_1g053070 52.941 68 32 0 12 79 2 69 8.26e-18 78.2
MS.gene93414.t1 MTR_8g087860 40.909 110 57 2 4 111 10 113 8.49e-18 78.2
MS.gene93414.t1 MTR_1g029670 50.000 64 32 0 12 75 2 65 8.82e-18 76.6
MS.gene93414.t1 MTR_8g033270 51.471 68 33 0 12 79 2 69 1.00e-17 78.2
MS.gene93414.t1 MTR_0003s0590 35.849 159 91 2 12 170 2 149 1.06e-17 78.2
MS.gene93414.t1 MTR_4g093970 48.235 85 40 2 13 94 29 112 1.14e-17 77.8
MS.gene93414.t1 MTR_3g452380 41.111 90 53 0 8 97 13 102 1.18e-17 77.8
MS.gene93414.t1 MTR_2g009890 40.594 101 38 1 12 112 2 80 1.52e-17 77.8
MS.gene93414.t1 MTR_3g088615 50.000 64 32 0 12 75 2 65 1.64e-17 75.9
MS.gene93414.t1 MTR_4g109810 36.170 141 72 5 12 150 2 126 1.83e-17 77.0
MS.gene93414.t1 MTR_8g066260 43.478 92 40 2 12 94 2 90 2.30e-17 77.0
MS.gene93414.t1 MTR_1g101970 36.646 161 90 8 12 168 2 154 2.65e-17 75.9
MS.gene93414.t1 MTR_4g084740 50.000 70 34 1 12 80 2 71 3.08e-17 77.8
MS.gene93414.t1 MTR_4g102530 35.714 154 87 4 13 163 3 147 4.97e-17 75.5
MS.gene93414.t1 MTR_5g066960 52.632 57 27 0 12 68 2 58 5.81e-17 71.2
MS.gene93414.t1 MTR_3g102570 54.286 70 31 1 12 80 2 71 6.16e-17 76.6
MS.gene93414.t1 MTR_5g031000 39.785 93 53 1 12 104 2 91 1.03e-16 74.7
MS.gene93414.t1 MTR_5g032520 52.239 67 32 0 13 79 3 69 1.05e-16 74.7
MS.gene93414.t1 MTR_5g032150 51.471 68 33 0 12 79 2 69 1.15e-16 74.7
MS.gene93414.t1 MTR_5g031000 39.785 93 53 1 12 104 2 91 1.19e-16 75.1
MS.gene93414.t1 MTR_3g067910 56.140 57 25 0 24 80 2 58 1.30e-16 72.0
MS.gene93414.t1 MTR_3g113030 52.381 63 30 0 12 74 2 64 1.41e-16 74.7
MS.gene93414.t1 MTR_4g109830 49.275 69 34 1 12 79 2 70 1.44e-16 74.7
MS.gene93414.t1 MTR_2g461710 57.407 54 23 0 12 65 2 55 1.67e-16 70.1
MS.gene93414.t1 MTR_5g021270 50.000 72 34 1 12 81 2 73 1.71e-16 74.3
MS.gene93414.t1 MTR_1g038300 34.940 166 84 7 12 169 2 151 1.78e-16 74.3
MS.gene93414.t1 MTR_5g021270 50.000 72 34 1 12 81 2 73 1.81e-16 74.3
MS.gene93414.t1 MTR_5g046870 51.515 66 30 1 12 75 2 67 2.03e-16 71.6
MS.gene93414.t1 MTR_7g016630 34.286 140 76 5 12 150 2 126 2.52e-16 74.3
MS.gene93414.t1 MTR_8g033220 34.459 148 89 4 13 160 3 142 5.28e-16 72.8
MS.gene93414.t1 MTR_8g033220 34.459 148 89 4 13 160 3 142 5.91e-16 72.8
MS.gene93414.t1 MTR_3g084980 57.143 56 24 0 12 67 2 57 9.44e-16 72.8
MS.gene93414.t1 MTR_7g016600 55.357 56 25 0 12 67 2 57 1.05e-15 72.4
MS.gene93414.t1 MTR_5g046790 34.286 140 74 6 12 148 2 126 1.06e-15 72.0
MS.gene93414.t1 MTR_2g045020 35.976 164 87 6 3 161 18 168 1.28e-15 71.2
MS.gene93414.t1 MTR_6g015975 49.296 71 35 1 12 81 2 72 1.33e-15 72.4
MS.gene93414.t1 MTR_7g075870 55.357 56 25 0 13 68 3 58 1.72e-15 71.2
MS.gene93414.t1 MTR_4g093030 35.043 117 68 3 12 126 2 112 1.76e-15 70.1
MS.gene93414.t1 MTR_7g075870 55.357 56 25 0 13 68 3 58 1.77e-15 71.2
MS.gene93414.t1 MTR_8g097090 55.357 56 25 0 12 67 2 57 1.95e-15 71.6
MS.gene93414.t1 MTR_7g075850 40.217 92 35 1 12 103 2 73 3.83e-15 71.2
MS.gene93414.t1 MTR_1g075570 35.246 122 69 2 21 142 1 112 1.02e-14 68.2
MS.gene93414.t1 MTR_4g108720 51.923 52 25 0 12 63 2 53 4.16e-13 66.2
MS.gene93414.t1 MTR_4g036050 38.571 70 42 1 13 81 3 72 8.73e-13 63.5
MS.gene93414.t1 MTR_4g036050 38.571 70 42 1 13 81 3 72 9.30e-13 63.2
MS.gene93414.t1 MTR_4g036050 38.028 71 43 1 12 81 2 72 9.58e-13 63.5
MS.gene93414.t1 MTR_5g041650 33.607 122 56 3 12 133 39 135 9.83e-13 65.5
MS.gene93414.t1 MTR_4g036050 38.028 71 43 1 12 81 2 72 9.89e-13 63.9
MS.gene93414.t1 MTR_1g041615 63.636 44 16 0 25 68 19 62 1.46e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93414.t1 AT5G60440 41.615 161 81 3 8 158 3 160 5.07e-36 127
MS.gene93414.t1 AT2G24840 38.608 158 92 4 10 162 61 218 7.84e-32 115
MS.gene93414.t1 AT1G65360 45.185 135 69 3 8 138 3 136 5.22e-31 112
MS.gene93414.t1 AT4G36590 36.747 166 95 3 8 163 3 168 9.81e-28 104
MS.gene93414.t1 AT1G01530 50.562 89 39 1 8 91 3 91 4.35e-26 100
MS.gene93414.t1 AT2G34440 36.111 144 84 4 12 150 2 142 9.27e-23 89.7
MS.gene93414.t1 AT3G66656 46.875 96 50 1 12 107 2 96 8.67e-22 87.0
MS.gene93414.t1 AT1G72350 32.680 153 74 3 12 164 43 166 1.12e-21 88.2
MS.gene93414.t1 AT3G04100 33.735 166 94 5 8 161 10 171 1.42e-21 87.4
MS.gene93414.t1 AT5G10140 44.037 109 54 3 12 119 2 104 1.85e-20 83.6
MS.gene93414.t1 AT4G09960 34.161 161 89 5 12 170 2 147 3.84e-20 84.0
MS.gene93414.t1 AT1G28460 34.132 167 99 4 8 165 4 168 3.86e-20 83.2
MS.gene93414.t1 AT4G09960 34.161 161 89 5 12 170 3 148 3.91e-20 84.0
MS.gene93414.t1 AT5G10140 44.037 109 54 3 12 119 2 104 3.99e-20 82.8
MS.gene93414.t1 AT5G10140 44.037 109 54 3 12 119 2 104 4.40e-20 83.2
MS.gene93414.t1 AT5G10140 44.037 109 54 3 12 119 2 104 4.49e-20 82.8
MS.gene93414.t1 AT4G09960 34.161 161 89 5 12 170 12 157 4.94e-20 84.0
MS.gene93414.t1 AT4G09960 34.161 161 89 5 12 170 28 173 7.62e-20 84.0
MS.gene93414.t1 AT4G09960 37.589 141 71 5 12 150 2 127 1.54e-19 82.4
MS.gene93414.t1 AT3G54340 55.556 63 28 0 12 74 2 64 2.77e-19 82.0
MS.gene93414.t1 AT5G51870 51.899 79 38 0 8 86 21 99 3.93e-19 80.9
MS.gene93414.t1 AT4G09960 32.919 161 91 4 12 170 97 242 4.08e-19 82.8
MS.gene93414.t1 AT4G18960 32.941 170 91 5 9 173 15 166 9.84e-19 80.9
MS.gene93414.t1 AT5G51870 50.617 81 40 0 1 81 1 81 1.11e-18 80.1
MS.gene93414.t1 AT1G77980 50.000 70 34 1 12 80 2 71 1.39e-18 81.6
MS.gene93414.t1 AT5G51870 55.072 69 31 0 13 81 3 71 1.45e-18 79.3
MS.gene93414.t1 AT1G77950 50.000 70 34 1 12 80 2 71 1.46e-18 80.5
MS.gene93414.t1 AT1G77950 50.000 70 34 1 12 80 2 71 1.46e-18 80.5
MS.gene93414.t1 AT1G77950 50.000 70 34 1 12 80 2 71 1.46e-18 80.5
MS.gene93414.t1 AT1G77950 50.000 70 34 1 12 80 2 71 1.46e-18 80.5
MS.gene93414.t1 AT5G51870 52.703 74 35 0 13 86 3 76 1.59e-18 78.6
MS.gene93414.t1 AT4G37940 45.946 74 40 0 12 85 2 75 2.17e-18 79.3
MS.gene93414.t1 AT2G45660 34.783 138 77 2 13 150 3 127 2.29e-18 77.8
MS.gene93414.t1 AT4G37940 45.946 74 40 0 12 85 2 75 2.35e-18 79.3
MS.gene93414.t1 AT4G24540 55.882 68 30 0 12 79 2 69 2.47e-18 79.0
MS.gene93414.t1 AT2G42830 30.769 169 96 6 9 173 14 165 2.56e-18 79.7
MS.gene93414.t1 AT1G29962 31.977 172 99 5 8 165 4 171 2.79e-18 78.2
MS.gene93414.t1 AT2G42830 30.769 169 96 6 9 173 14 165 2.87e-18 79.3
MS.gene93414.t1 AT2G45650 43.878 98 33 1 12 109 2 77 3.02e-18 79.3
MS.gene93414.t1 AT4G37940 45.946 74 40 0 12 85 2 75 3.68e-18 77.8
MS.gene93414.t1 AT1G22130 50.000 70 34 1 12 80 2 71 3.98e-18 80.5
MS.gene93414.t1 AT4G22950 34.532 139 75 2 13 150 3 126 4.13e-18 77.4
MS.gene93414.t1 AT2G22630 47.297 74 39 0 12 85 2 75 4.75e-18 78.6
MS.gene93414.t1 AT2G22630 47.297 74 39 0 12 85 2 75 4.75e-18 78.6
MS.gene93414.t1 AT2G22540 53.731 67 31 0 13 79 3 69 4.82e-18 78.6
MS.gene93414.t1 AT2G22540 53.731 67 31 0 13 79 3 69 4.82e-18 78.6
MS.gene93414.t1 AT5G51870 46.067 89 44 1 13 101 3 87 5.04e-18 78.2
MS.gene93414.t1 AT5G13790 52.703 74 33 1 12 85 2 73 7.63e-18 78.6
MS.gene93414.t1 AT5G13790 52.703 74 33 1 12 85 2 73 7.88e-18 78.6
MS.gene93414.t1 AT2G45660 34.783 138 77 2 13 150 3 127 8.03e-18 77.8
MS.gene93414.t1 AT5G23260 29.268 164 99 4 6 164 12 163 8.64e-18 78.6
MS.gene93414.t1 AT3G57230 45.588 68 37 0 12 79 2 69 9.41e-18 75.9
MS.gene93414.t1 AT5G23260 46.250 80 41 1 6 83 12 91 9.93e-18 78.2
MS.gene93414.t1 AT5G51860 36.806 144 75 5 13 154 3 132 1.22e-17 77.0
MS.gene93414.t1 AT4G22950 34.532 139 75 2 13 150 3 126 1.32e-17 77.0
MS.gene93414.t1 AT4G22950 34.532 139 75 2 13 150 3 126 1.32e-17 77.0
MS.gene93414.t1 AT5G51860 36.806 144 75 5 13 154 3 132 1.46e-17 77.0
MS.gene93414.t1 AT2G22540 64.151 53 19 0 13 65 3 55 1.53e-17 77.4
MS.gene93414.t1 AT3G57390 51.471 68 33 0 12 79 2 69 2.46e-17 76.6
MS.gene93414.t1 AT3G58780 29.885 174 101 6 4 173 9 165 2.66e-17 77.0
MS.gene93414.t1 AT3G58780 29.885 174 101 6 4 173 15 171 3.05e-17 77.0
MS.gene93414.t1 AT3G57230 45.588 68 37 0 12 79 2 69 3.36e-17 76.6
MS.gene93414.t1 AT3G57230 45.588 68 37 0 12 79 2 69 3.36e-17 76.6
MS.gene93414.t1 AT5G23260 29.936 157 93 4 12 163 2 146 3.89e-17 76.3
MS.gene93414.t1 AT5G23260 29.747 158 94 4 12 164 2 147 3.96e-17 76.6
MS.gene93414.t1 AT3G58780 36.290 124 63 5 4 123 9 120 4.59e-17 76.6
MS.gene93414.t1 AT1G28450 32.530 166 98 5 8 161 4 167 4.88e-17 75.1
MS.gene93414.t1 AT3G57390 51.471 68 33 0 12 79 2 69 6.46e-17 75.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 6.47e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 6.47e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 6.47e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 6.47e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 6.47e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 7.38e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 7.38e-17 73.9
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 7.38e-17 73.9
MS.gene93414.t1 AT5G62165 45.455 77 42 0 13 89 3 79 8.34e-17 72.4
MS.gene93414.t1 AT3G58780 50.769 65 32 0 4 68 9 73 1.09e-16 75.1
MS.gene93414.t1 AT3G58780 50.769 65 32 0 4 68 9 73 1.18e-16 75.5
MS.gene93414.t1 AT3G30260 30.723 166 95 5 12 173 2 151 1.92e-16 74.7
MS.gene93414.t1 AT4G11880 53.333 60 28 0 13 72 3 62 2.33e-16 73.2
MS.gene93414.t1 AT4G11880 53.333 60 28 0 13 72 3 62 2.33e-16 73.2
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 2.91e-16 73.2
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 2.91e-16 73.2
MS.gene93414.t1 AT5G20240 48.611 72 35 1 12 81 2 73 3.75e-16 71.6
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 3.80e-16 73.2
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 3.80e-16 73.2
MS.gene93414.t1 AT5G62165 38.053 113 60 2 13 119 3 111 3.80e-16 73.2
MS.gene93414.t1 AT2G14210 39.604 101 40 2 12 112 2 81 3.96e-16 73.6
MS.gene93414.t1 AT2G14210 40.594 101 39 2 12 112 2 81 5.89e-16 73.2
MS.gene93414.t1 AT1G69120 49.231 65 30 1 12 76 2 63 6.11e-16 73.2
MS.gene93414.t1 AT5G15800 41.489 94 51 2 12 101 2 95 6.98e-16 73.2
MS.gene93414.t1 AT4G11880 58.182 55 23 0 13 67 3 57 7.58e-16 72.4
MS.gene93414.t1 AT4G11880 58.182 55 23 0 13 67 3 57 7.58e-16 72.4
MS.gene93414.t1 AT5G20240 48.611 72 35 1 12 81 2 73 7.62e-16 72.4
MS.gene93414.t1 AT5G60910 36.879 141 73 6 12 150 2 128 9.52e-16 72.8
MS.gene93414.t1 AT1G26310 54.386 57 26 0 12 68 2 58 9.79e-16 72.8
MS.gene93414.t1 AT3G02310 41.489 94 51 2 12 101 2 95 1.24e-15 71.6
MS.gene93414.t1 AT5G15800 41.489 94 51 2 12 101 2 95 1.54e-15 72.4
MS.gene93414.t1 AT1G69120 49.231 65 30 1 12 76 2 63 1.60e-15 72.4
MS.gene93414.t1 AT2G03710 53.571 56 26 0 12 67 2 57 1.64e-15 70.9
MS.gene93414.t1 AT1G24260 55.357 56 25 0 12 67 2 57 1.81e-15 72.0
MS.gene93414.t1 AT1G24260 55.357 56 25 0 12 67 2 57 1.84e-15 71.6
MS.gene93414.t1 AT1G24260 55.357 56 25 0 12 67 2 57 1.89e-15 72.0
MS.gene93414.t1 AT2G03710 53.571 56 26 0 12 67 2 57 2.12e-15 72.0
MS.gene93414.t1 AT2G03710 53.571 56 26 0 12 67 2 57 2.18e-15 72.0
MS.gene93414.t1 AT3G61120 44.286 70 39 0 12 81 2 71 2.42e-15 71.6
MS.gene93414.t1 AT3G02310 55.357 56 25 0 12 67 2 57 3.89e-15 71.2
MS.gene93414.t1 AT5G65070 43.478 69 38 1 12 79 2 70 6.10e-15 68.6
MS.gene93414.t1 AT5G65060 31.325 166 80 5 12 170 2 140 6.85e-15 69.3
MS.gene93414.t1 AT5G65060 31.325 166 80 5 12 170 2 140 8.65e-15 69.3
MS.gene93414.t1 AT1G71692 44.286 70 38 1 13 81 3 72 8.73e-15 69.7
MS.gene93414.t1 AT5G65050 44.928 69 37 1 12 79 2 70 9.01e-15 68.9
MS.gene93414.t1 AT5G65070 31.176 170 81 6 12 173 2 143 1.16e-14 68.9
MS.gene93414.t1 AT4G37435 53.571 56 26 0 12 67 2 57 1.78e-14 68.2
MS.gene93414.t1 AT5G65050 44.928 69 37 1 12 79 2 70 1.80e-14 68.2
MS.gene93414.t1 AT5G65050 44.928 69 37 1 12 79 2 70 1.82e-14 68.2
MS.gene93414.t1 AT5G65050 44.928 69 37 1 12 79 2 70 1.85e-14 68.6
MS.gene93414.t1 AT1G47760 47.458 59 31 0 12 70 2 60 2.60e-14 67.8
MS.gene93414.t1 AT5G65070 43.478 69 38 1 12 79 2 70 3.44e-14 67.8
MS.gene93414.t1 AT5G65070 43.478 69 38 1 12 79 2 70 3.45e-14 68.2
MS.gene93414.t1 AT5G65060 42.029 69 39 1 12 79 2 70 5.67e-14 67.0
MS.gene93414.t1 AT5G65070 47.368 57 30 0 12 68 2 58 7.38e-14 67.4
MS.gene93414.t1 AT1G18750 46.429 56 30 0 12 67 2 57 3.72e-13 66.6
MS.gene93414.t1 AT1G18750 46.429 56 30 0 12 67 2 57 4.31e-13 66.6
MS.gene93414.t1 AT1G18750 46.429 56 30 0 12 67 2 57 4.39e-13 66.6
MS.gene93414.t1 AT5G38620 27.108 166 93 6 13 171 6 150 8.26e-13 65.5
MS.gene93414.t1 AT1G69540 25.967 181 112 6 12 171 2 181 1.02e-12 65.1
MS.gene93414.t1 AT1G69540 25.967 181 112 6 12 171 2 181 1.82e-12 64.7
MS.gene93414.t1 AT2G03060 46.552 58 30 1 12 68 2 59 2.76e-12 64.3
MS.gene93414.t1 AT2G03060 46.552 58 30 1 12 68 2 59 2.76e-12 64.3
MS.gene93414.t1 AT2G03060 46.552 58 30 1 12 68 2 59 2.76e-12 64.3
MS.gene93414.t1 AT5G49490 36.709 79 46 1 8 82 41 119 2.76e-12 63.5
MS.gene93414.t1 AT2G03060 46.552 58 30 1 12 68 2 59 3.07e-12 63.9
MS.gene93414.t1 AT5G65080 41.667 60 35 0 6 65 3 62 5.97e-12 61.6
MS.gene93414.t1 AT5G65080 46.296 54 29 0 12 65 9 62 6.14e-12 61.6
MS.gene93414.t1 AT5G49420 34.177 79 48 1 8 82 3 81 1.31e-11 62.0
MS.gene93414.t1 AT1G17310 32.680 153 71 3 12 164 48 168 1.52e-11 60.8
MS.gene93414.t1 AT1G17310 32.680 153 71 3 12 164 59 179 1.85e-11 60.8
MS.gene93414.t1 AT1G31140 42.424 66 36 1 18 81 8 73 5.25e-11 59.3
MS.gene93414.t1 AT1G31140 42.424 66 36 1 18 81 8 73 5.48e-11 59.3

Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTGATGTTGAAATTT+TGG 0.117908 1.1:+76028160 MS.gene93414:CDS
TGAAGAGCTTGAACAATTTA+TGG 0.162069 1.1:+76028238 MS.gene93414:CDS
TAAAGAGCAAGCTTCTTAAA+AGG 0.200612 1.1:+76028276 MS.gene93414:CDS
TAGCTATATCAAAGGAAATA+TGG 0.289414 1.1:+76028037 MS.gene93414:CDS
GTACAATTTCACCATGAATA+TGG 0.297892 1.1:+76027794 None:intergenic
TCTTTGGTTATCCATATTCA+TGG 0.348175 1.1:-76027805 None:intergenic
CAAAGGAAATATGGAATTTG+AGG 0.375897 1.1:+76028046 MS.gene93414:CDS
TTCCTTTGATATAGCTATTG+AGG 0.388895 1.1:-76028031 None:intergenic
GGCATTAAAGATGTTAGAGT+TGG 0.397789 1.1:+76028127 MS.gene93414:CDS
TTTGAGGATTCAAAATCAAC+AGG 0.408590 1.1:+76028062 MS.gene93414:CDS
TGAGAAAGTGACTTGTTTGT+TGG 0.422775 1.1:-76027880 None:intergenic
GCTGACAAACTATTCTGCTT+TGG 0.441818 1.1:+76027987 MS.gene93414:CDS
ATTGAGGATTGTATCGGTGT+TGG 0.451013 1.1:-76028015 None:intergenic
TTGAGGATTGTATCGGTGTT+GGG 0.452068 1.1:-76028014 None:intergenic
AAAGAGCAAGCTTCTTAAAA+GGG 0.470494 1.1:+76028277 MS.gene93414:CDS
AAGCAGAATAGTTTGTCAGC+AGG 0.500375 1.1:-76027984 None:intergenic
AAAGTACAATAGACAATATG+AGG 0.506411 1.1:+76028103 MS.gene93414:CDS
AGCAGAATAGTTTGTCAGCA+GGG 0.519077 1.1:-76027983 None:intergenic
AACCAAAGAAAGAAAACCAC+AGG 0.525657 1.1:+76027819 MS.gene93414:CDS
TTCAATCTTCTTGCGCCCTG+TGG 0.560440 1.1:-76027835 None:intergenic
ATCCTCAATAGCTATATCAA+AGG 0.568313 1.1:+76028029 MS.gene93414:CDS
GCAGAATAGTTTGTCAGCAG+GGG 0.610124 1.1:-76027982 None:intergenic
ACTTTCTCAAAGAGAAGACA+AGG 0.611669 1.1:+76027894 MS.gene93414:CDS
ATAGCTATTGAGGATTGTAT+CGG 0.621531 1.1:-76028021 None:intergenic
GTACAATAGACAATATGAGG+AGG 0.673698 1.1:+76028106 MS.gene93414:CDS
ACCAAAGAAAGAAAACCACA+GGG 0.726086 1.1:+76027820 MS.gene93414:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGTACAATAGACAATATG+AGG + chr1.1:76028103-76028122 MS.gene93414:CDS 25.0%
! TAGCTATATCAAAGGAAATA+TGG + chr1.1:76028037-76028056 MS.gene93414:CDS 25.0%
AAAGAGCAAGCTTCTTAAAA+GGG + chr1.1:76028277-76028296 MS.gene93414:CDS 30.0%
ATAGCTATTGAGGATTGTAT+CGG - chr1.1:76028024-76028043 None:intergenic 30.0%
ATCACCTTTCTTCAAAAACT+TGG - chr1.1:76028186-76028205 None:intergenic 30.0%
ATCCTCAATAGCTATATCAA+AGG + chr1.1:76028029-76028048 MS.gene93414:CDS 30.0%
CAAAGGAAATATGGAATTTG+AGG + chr1.1:76028046-76028065 MS.gene93414:CDS 30.0%
CTTGCTCTTTAACTCAAAAA+TGG - chr1.1:76028267-76028286 None:intergenic 30.0%
TAAAGAGCAAGCTTCTTAAA+AGG + chr1.1:76028276-76028295 MS.gene93414:CDS 30.0%
TGAAGAGCTTGAACAATTTA+TGG + chr1.1:76028238-76028257 MS.gene93414:CDS 30.0%
TTCCTTTGATATAGCTATTG+AGG - chr1.1:76028034-76028053 None:intergenic 30.0%
TTTGAGGATTCAAAATCAAC+AGG + chr1.1:76028062-76028081 MS.gene93414:CDS 30.0%
! ACTAGCTGATGTTGAAATTT+TGG + chr1.1:76028160-76028179 MS.gene93414:CDS 30.0%
! TTGTCTATTGTACTTTTCGT+AGG - chr1.1:76028099-76028118 None:intergenic 30.0%
!! AGTTTTTGAAGAAAGGTGAT+TGG + chr1.1:76028186-76028205 MS.gene93414:CDS 30.0%
AACCAAAGAAAGAAAACCAC+AGG + chr1.1:76027819-76027838 MS.gene93414:CDS 35.0%
ACCAAAGAAAGAAAACCACA+GGG + chr1.1:76027820-76027839 MS.gene93414:CDS 35.0%
ACTTTCTCAAAGAGAAGACA+AGG + chr1.1:76027894-76027913 MS.gene93414:CDS 35.0%
GGCATTAAAGATGTTAGAGT+TGG + chr1.1:76028127-76028146 MS.gene93414:CDS 35.0%
GTACAATAGACAATATGAGG+AGG + chr1.1:76028106-76028125 MS.gene93414:CDS 35.0%
!! TGAGAAAGTGACTTGTTTGT+TGG - chr1.1:76027883-76027902 None:intergenic 35.0%
!! TTGGCCAAGTTTTTGAAGAA+AGG + chr1.1:76028179-76028198 MS.gene93414:CDS 35.0%
!! TTTTGAAGAAAGGTGATTGG+TGG + chr1.1:76028189-76028208 MS.gene93414:CDS 35.0%
GCTGACAAACTATTCTGCTT+TGG + chr1.1:76027987-76028006 MS.gene93414:CDS 40.0%
! AAGCAGAATAGTTTGTCAGC+AGG - chr1.1:76027987-76028006 None:intergenic 40.0%
! AGCAGAATAGTTTGTCAGCA+GGG - chr1.1:76027986-76028005 None:intergenic 40.0%
! ATTGAGGATTGTATCGGTGT+TGG - chr1.1:76028018-76028037 None:intergenic 40.0%
! TTGAGGATTGTATCGGTGTT+GGG - chr1.1:76028017-76028036 None:intergenic 40.0%
! GCAGAATAGTTTGTCAGCAG+GGG - chr1.1:76027985-76028004 None:intergenic 45.0%
! GCCCTGTGGTTTTCTTTCTT+TGG - chr1.1:76027824-76027843 None:intergenic 45.0%
TTCAATCTTCTTGCGCCCTG+TGG - chr1.1:76027838-76027857 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76027807 76028328 76027807 ID=MS.gene93414
chr1.1 mRNA 76027807 76028328 76027807 ID=MS.gene93414.t1;Parent=MS.gene93414
chr1.1 exon 76027807 76028328 76027807 ID=MS.gene93414.t1.exon1;Parent=MS.gene93414.t1
chr1.1 CDS 76027807 76028328 76027807 ID=cds.MS.gene93414.t1;Parent=MS.gene93414.t1
Gene Sequence

>MS.gene93414

ATGAATATGGATAACCAAAGAAAGAAAACCACAGGGCGCAAGAAGATTGAAATCAAAAAGCTTGACAAAGAATCCAACAAACAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATTGTGTTCTCCCCTGCTGACAAACTATTCTGCTTTGGTCAACCCAACACCGATACAATCCTCAATAGCTATATCAAAGGAAATATGGAATTTGAGGATTCAAAATCAACAGGAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAGAAACTAGCTGATGTTGAAATTTTGGCCAAGTTTTTGAAGAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGGTGTCCATTTTTGAGTTAAAGAGCAAGCTTCTTAAAAGGGCTGATGAACTTATGATGTCTGTCATATAG
Protein sequence

>MS.gene93414.t1

MNMDNQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTDTILNSYIKGNMEFEDSKSTGNSSTYEKYNRQYEEALKMLELEKKKLADVEILAKFLKKGDWWNDSIDDMSSEELEQFMVSIFELKSKLLKRADELMMSVI