AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93474

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93474.t1 MTR_6g045327 84.615 104 16 0 87 190 1 104 9.76e-56 184
MS.gene93474.t1 MTR_6g045327 61.475 122 25 1 176 275 266 387 7.69e-37 134
MS.gene93474.t1 MTR_2g072590 92.647 68 5 0 1 68 1 68 8.11e-37 138
MS.gene93474.t1 MTR_8g093040 54.545 110 50 0 87 196 1 110 5.22e-32 119
MS.gene93474.t1 MTR_7g033910 81.944 72 9 1 1 68 1 72 3.96e-24 102
MS.gene93474.t1 MTR_1g032570 42.453 106 54 1 83 188 1 99 7.47e-20 89.4
MS.gene93474.t1 MTR_4g021760 45.556 90 48 1 97 186 8 96 1.12e-17 81.6
MS.gene93474.t1 MTR_6g016850 48.193 83 42 1 99 181 8 89 6.88e-17 76.6
MS.gene93474.t1 MTR_4g021790 46.512 86 45 1 100 185 10 94 2.20e-16 77.4
MS.gene93474.t1 MTR_5g055260 49.383 81 40 1 100 180 10 89 2.25e-16 77.0
MS.gene93474.t1 MTR_8g105600 48.780 82 41 1 100 181 9 89 2.32e-16 79.0
MS.gene93474.t1 MTR_4g021855 40.404 99 58 1 100 198 10 107 2.75e-15 74.7
MS.gene93474.t1 MTR_4g021845 41.379 87 50 1 100 186 10 95 8.89e-14 69.3
MS.gene93474.t1 MTR_4g121020 37.079 89 56 0 99 187 30 118 1.09e-12 68.2
MS.gene93474.t1 MTR_4g121020 37.079 89 56 0 99 187 30 118 1.15e-12 68.2
MS.gene93474.t1 MTR_2g034960 35.714 98 63 0 99 196 28 125 1.26e-12 68.2
MS.gene93474.t1 MTR_3g086100 35.165 91 59 0 98 188 11 101 2.23e-12 67.0
MS.gene93474.t1 MTR_0450s0040 36.145 83 53 0 104 186 8 90 1.57e-11 64.3
MS.gene93474.t1 MTR_8g079940 34.831 89 58 0 100 188 25 113 2.05e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93474.t1 AT2G01760 39.560 91 54 1 99 188 6 96 2.98e-13 69.3
MS.gene93474.t1 AT5G20200 56.140 57 21 1 12 64 23 79 5.82e-13 69.3
MS.gene93474.t1 AT1G67710 36.047 86 55 0 103 188 10 95 5.34e-12 66.2
MS.gene93474.t1 AT3G16857 33.333 93 62 0 94 186 27 119 8.30e-12 65.5
MS.gene93474.t1 AT3G16857 33.333 93 62 0 94 186 27 119 9.43e-12 65.5

Find 72 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTCTTAGAGGGTTTA+AGG 0.118099 6.4:+29610096 MS.gene93474:CDS
TCACATTGTATGACTGAATT+AGG 0.191696 6.4:-29610981 None:intergenic
AATCCCATCCAATTGACTTT+TGG 0.296296 6.4:-29610163 None:intergenic
GGAGTGGACGGTGGCTTTCT+AGG 0.331552 6.4:-29608780 None:intergenic
AGAATTATTGTCACATTGTA+TGG 0.339675 6.4:-29611081 None:intergenic
TGCTTTAATCCCTTCTTCAA+TGG 0.341761 6.4:+29610043 MS.gene93474:CDS
CTCATCACCTGGATTCATAT+TGG 0.372529 6.4:-29611153 None:intergenic
ACTTCCCCAACAATTCTTAG+AGG 0.375785 6.4:+29610088 MS.gene93474:CDS
TGACAGGAATATTGATTTGT+TGG 0.378211 6.4:-29610448 None:intergenic
TAAACCCTCTAAGAATTGTT+GGG 0.382270 6.4:-29610093 None:intergenic
ACAATTCTTAGAGGGTTTAA+GGG 0.385698 6.4:+29610097 MS.gene93474:CDS
ACCTTGATCTTCAACGGAAT+CGG 0.389512 6.4:-29608913 None:intergenic
TGATTTGTTGGGTAATTTGT+TGG 0.402510 6.4:-29610436 None:intergenic
TCAGTCTAGTGTTCTGAATT+CGG 0.404642 6.4:+29611058 MS.gene93474:CDS
CCTTGATCTTCAACGGAATC+GGG 0.412644 6.4:-29608912 None:intergenic
GACGATAGCTTTATGGATAG+TGG 0.420651 6.4:-29610141 None:intergenic
CCGCCAGTGCCTCTTTGCTC+CGG 0.421831 6.4:-29608738 None:intergenic
TTAAACCCTCTAAGAATTGT+TGG 0.427205 6.4:-29610094 None:intergenic
GACAGGAATATTGATTTGTT+GGG 0.435755 6.4:-29610447 None:intergenic
AATTTGTTGGAGAAAATCAT+AGG 0.440238 6.4:-29610423 None:intergenic
GCTATCGTCCAAAAGTCAAT+TGG 0.443887 6.4:+29610155 MS.gene93474:CDS
GGGTTTAAGGGTTCTTGTGA+TGG 0.465861 6.4:+29610109 MS.gene93474:CDS
TTGGAAGAGGGACGGGCGTA+AGG 0.465971 6.4:-29608801 None:intergenic
GTTGAATGAGCCATTGAAGA+AGG 0.470399 6.4:-29610053 None:intergenic
TACGGTTGTGATTTGATCCA+TGG 0.478872 6.4:-29608715 None:intergenic
TCGGCGGTTGGAAGAGGGAC+GGG 0.490251 6.4:-29608808 None:intergenic
AATCCATCGGCGGTTGGAAG+AGG 0.491369 6.4:-29608814 None:intergenic
ATCTTCAACGGAATCGGGAG+TGG 0.495827 6.4:-29608907 None:intergenic
TCGGGAGTGGAGAAGAAAGA+AGG 0.497598 6.4:-29608894 None:intergenic
GACGGTGGCTTTCTAGGCGG+TGG 0.509173 6.4:-29608774 None:intergenic
GTCCCTCTTCCAACCGCCGA+TGG 0.519259 6.4:+29608811 MS.gene93474:CDS
AGAGGGACGGGCGTAAGGAG+TGG 0.524272 6.4:-29608796 None:intergenic
AGTGCCTCTTTGCTCCGGTA+CGG 0.537560 6.4:-29608733 None:intergenic
AATGGCTCATTCAACTGAGA+TGG 0.540861 6.4:+29610061 MS.gene93474:CDS
GATCAGTCCAATATGAATCC+AGG 0.542338 6.4:+29611146 MS.gene93474:CDS
GTACCGGAGCAAAGAGGCAC+TGG 0.552212 6.4:+29608735 MS.gene93474:CDS
ATAGGCAGGATCGACAAGCT+TGG 0.552903 6.4:-29608838 None:intergenic
CATATGTTCTTACTAATGAC+AGG 0.555728 6.4:-29610464 None:intergenic
CGTCCAAAAGTCAATTGGAT+GGG 0.561665 6.4:+29610160 MS.gene93474:CDS
TCATAGATGATACGATAGGC+AGG 0.563425 6.4:-29608852 None:intergenic
CTTCCCCAACAATTCTTAGA+GGG 0.563757 6.4:+29610089 MS.gene93474:CDS
TTGAATGAGCCATTGAAGAA+GGG 0.565654 6.4:-29610052 None:intergenic
CAATTAAAGAACTCATCACC+TGG 0.565714 6.4:-29611164 None:intergenic
ATCCATCGGCGGTTGGAAGA+GGG 0.570834 6.4:-29608813 None:intergenic
TCGTCCAAAAGTCAATTGGA+TGG 0.572432 6.4:+29610159 MS.gene93474:CDS
GGATCAAATCACAACCGTAC+CGG 0.574852 6.4:+29608719 MS.gene93474:CDS
CTTGGAAATCCATCGGCGGT+TGG 0.578886 6.4:-29608820 None:intergenic
GTAAAATTATTGACGAATGT+CGG 0.580921 6.4:-29611122 None:intergenic
ATCGGCGGTTGGAAGAGGGA+CGG 0.581592 6.4:-29608809 None:intergenic
TTCACTCTTCACCTCAACAA+CGG 0.595694 6.4:+29610018 MS.gene93474:CDS
GGCTCATTCAACTGAGATGG+AGG 0.600597 6.4:+29610064 MS.gene93474:CDS
CCGGAGCAAAGAGGCACTGG+CGG 0.601572 6.4:+29608738 MS.gene93474:CDS
AAACCCTCTAAGAATTGTTG+GGG 0.603847 6.4:-29610092 None:intergenic
GTAAAGCTGTTGGCAAATGT+CGG 0.606699 6.4:-29610942 None:intergenic
GTAAAGATGTTGGCAAATGT+CGG 0.606699 6.4:-29611032 None:intergenic
TCAATTGGATGGGATTACAC+AGG 0.608363 6.4:+29610170 MS.gene93474:CDS
GCAAATGTCGGTGAATGTTG+TGG 0.612657 6.4:-29610930 None:intergenic
AAAAGAAGCATTAGAGCATG+TGG 0.613637 6.4:-29610324 None:intergenic
CGACAAGCTTGGAAATCCAT+CGG 0.614354 6.4:-29608827 None:intergenic
AGACTGAGCAGTAAAGATGT+TGG 0.615246 6.4:-29611042 None:intergenic
GCCTATCGTATCATCTATGA+CGG 0.615533 6.4:+29608855 MS.gene93474:CDS
AGACTGAGCAGTAAAGCTGT+TGG 0.627427 6.4:-29610952 None:intergenic
GCAAATGTCGGTGAATGTTG+TGG 0.629584 6.4:-29611020 None:intergenic
GAAAGAAGGAAGAAAACGAG+TGG 0.634794 6.4:-29608880 None:intergenic
ATTAAAGCAAGCCGTTGTTG+AGG 0.638682 6.4:-29610029 None:intergenic
CGGGCGTAAGGAGTGGACGG+TGG 0.639833 6.4:-29608789 None:intergenic
ACGAATGTCGGTGAATGTTG+TGG 0.644719 6.4:-29611110 None:intergenic
GGACGGGCGTAAGGAGTGGA+CGG 0.645747 6.4:-29608792 None:intergenic
GTGGACGGTGGCTTTCTAGG+CGG 0.669978 6.4:-29608777 None:intergenic
TCCGTCATAGATGATACGAT+AGG 0.686886 6.4:-29608856 None:intergenic
ACAACCGTACCGGAGCAAAG+AGG 0.697583 6.4:+29608729 MS.gene93474:CDS
CAAGCTTGGAAATCCATCGG+CGG 0.727077 6.4:-29608824 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTCTCAAATATATAT+AGG - chr6.4:29609171-29609190 None:intergenic 10.0%
!! AATATTCTCAAATATATATA+GGG - chr6.4:29609170-29609189 None:intergenic 10.0%
!!! AAAATAAAGTTTTTTTAGAA+AGG + chr6.4:29609670-29609689 MS.gene93474:intron 10.0%
!!! AAGTAAAAAGAAAATATTTT+TGG + chr6.4:29609202-29609221 MS.gene93474:intron 10.0%
!!! TTTCTAAAAAAACTTTATTT+TGG - chr6.4:29609671-29609690 None:intergenic 10.0%
!! AAAATAGGTATATATTAGTA+GGG - chr6.4:29609557-29609576 None:intergenic 15.0%
!! AAGTAAAAAAAGTAGTAATA+AGG - chr6.4:29609730-29609749 None:intergenic 15.0%
!! ATATTCTCAAATATATATAG+GGG - chr6.4:29609169-29609188 None:intergenic 15.0%
!! TAAAATAGGTATATATTAGT+AGG - chr6.4:29609558-29609577 None:intergenic 15.0%
!! TATAGTATGATAACTAATTT+CGG + chr6.4:29608996-29609015 MS.gene93474:intron 15.0%
!!! ACATTTTTGAAGAATAAAAT+AGG - chr6.4:29609572-29609591 None:intergenic 15.0%
!!! ATATTATTCTATCTTGATTT+TGG - chr6.4:29609700-29609719 None:intergenic 15.0%
!! CTCTTAAAATTTCAAATGAA+TGG - chr6.4:29609620-29609639 None:intergenic 20.0%
!!! ATTATTGATCTTTTTCAACA+AGG - chr6.4:29609340-29609359 None:intergenic 20.0%
!!! CATTCATTTGAAATTTTAAG+AGG + chr6.4:29609618-29609637 MS.gene93474:intron 20.0%
! AAAAACACTTCATTGAACTT+TGG + chr6.4:29609375-29609394 MS.gene93474:intron 25.0%
! AAAACACTTCATTGAACTTT+GGG + chr6.4:29609376-29609395 MS.gene93474:intron 25.0%
! AAATGAATGGAACGAAAAAT+TGG - chr6.4:29609607-29609626 None:intergenic 25.0%
! AGAATTATTGTCACATTGTA+TGG - chr6.4:29610994-29611013 None:intergenic 25.0%
! AGACTTATCAGTAAAAATGT+TGG - chr6.4:29610775-29610794 None:intergenic 25.0%
! ATGTAATTAAACAATGTGAG+TGG + chr6.4:29609102-29609121 MS.gene93474:intron 25.0%
! CAATCACAATAATGGTAATT+TGG - chr6.4:29609036-29609055 None:intergenic 25.0%
! GTAAAATTATTGACGAATGT+CGG - chr6.4:29611125-29611144 None:intergenic 25.0%
! TCCACAATATTCATCAAAAT+TGG + chr6.4:29610749-29610768 MS.gene93474:intron 25.0%
!! ATTACGCAATTATGCTTTTA+TGG + chr6.4:29608973-29608992 MS.gene93474:intron 25.0%
!! GTAAAAATGTTGGTAAATGT+AGG - chr6.4:29610855-29610874 None:intergenic 25.0%
!!! AATTTGTTGGAGAAAATCAT+AGG - chr6.4:29610426-29610445 None:intergenic 25.0%
AACAATTCTTAGAGGGTTTA+AGG + chr6.4:29610096-29610115 MS.gene93474:CDS 30.0%
AATGTTCGCAATCACAATAA+TGG - chr6.4:29609044-29609063 None:intergenic 30.0%
ACAATTCTTAGAGGGTTTAA+GGG + chr6.4:29610097-29610116 MS.gene93474:CDS 30.0%
AGACTGAGTAGTAAAAATGT+TGG - chr6.4:29610865-29610884 None:intergenic 30.0%
CATATGTTCTTACTAATGAC+AGG - chr6.4:29610467-29610486 None:intergenic 30.0%
CATTTGACCTCTTCAAAATA+AGG - chr6.4:29610525-29610544 None:intergenic 30.0%
GAAACTTGTATTACCAAATG+AGG - chr6.4:29609458-29609477 None:intergenic 30.0%
GCATAAATCTCAAATTGCAA+TGG - chr6.4:29609486-29609505 None:intergenic 30.0%
TCACATTGTATGACTGAATT+AGG - chr6.4:29610984-29611003 None:intergenic 30.0%
TTAAAGAATGAAATGCCGAA+AGG + chr6.4:29610556-29610575 MS.gene93474:intron 30.0%
TTACCAAATGAGGAAATTGA+AGG - chr6.4:29609448-29609467 None:intergenic 30.0%
! AATATATATAGGGGTTTGCT+AGG - chr6.4:29609160-29609179 None:intergenic 30.0%
! GCATGGGATTTTTAACATTT+TGG - chr6.4:29610659-29610678 None:intergenic 30.0%
! TAAACCCTCTAAGAATTGTT+GGG - chr6.4:29610096-29610115 None:intergenic 30.0%
! TTAAACCCTCTAAGAATTGT+TGG - chr6.4:29610097-29610116 None:intergenic 30.0%
! TTTTGCATCTATGAGAAAAG+AGG - chr6.4:29609921-29609940 None:intergenic 30.0%
!! GACAGGAATATTGATTTGTT+GGG - chr6.4:29610450-29610469 None:intergenic 30.0%
!! GCCAATTTTGATGAATATTG+TGG - chr6.4:29610753-29610772 None:intergenic 30.0%
!! TGACAGGAATATTGATTTGT+TGG - chr6.4:29610451-29610470 None:intergenic 30.0%
!! TGATTTGTTGGGTAATTTGT+TGG - chr6.4:29610439-29610458 None:intergenic 30.0%
!!! TTTTGCATTGACTCTTTTGA+GGG + chr6.4:29610343-29610362 MS.gene93474:CDS 30.0%
AAACGAACCTTGATCTTCAA+CGG - chr6.4:29608922-29608941 None:intergenic 35.0%
ACTCCTTCAATTTCCTCATT+TGG + chr6.4:29609442-29609461 MS.gene93474:intron 35.0%
AGACCTAATTGTGTTTCAGT+AGG - chr6.4:29610627-29610646 None:intergenic 35.0%
ATGAGGAAATTGAAGGAGTT+AGG - chr6.4:29609441-29609460 None:intergenic 35.0%
CAATTAAAGAACTCATCACC+TGG - chr6.4:29611167-29611186 None:intergenic 35.0%
CCTCTTCAAAATAAGGTTGT+CGG - chr6.4:29610518-29610537 None:intergenic 35.0%
CTCTTCAAAATAAGGTTGTC+GGG - chr6.4:29610517-29610536 None:intergenic 35.0%
CTTCCTACTGAAACACAATT+AGG + chr6.4:29610621-29610640 MS.gene93474:intron 35.0%
GTAAAGATGTTGGCAAATGT+CGG - chr6.4:29611035-29611054 None:intergenic 35.0%
GTAAATGTAGGTGAATGTTG+TGG - chr6.4:29610843-29610862 None:intergenic 35.0%
TGAGAGGAAAAAATCAAAGC+AGG + chr6.4:29610579-29610598 MS.gene93474:intron 35.0%
TGCTTTAATCCCTTCTTCAA+TGG + chr6.4:29610043-29610062 MS.gene93474:CDS 35.0%
TTGAATGAGCCATTGAAGAA+GGG - chr6.4:29610055-29610074 None:intergenic 35.0%
! AAACCCTCTAAGAATTGTTG+GGG - chr6.4:29610095-29610114 None:intergenic 35.0%
! TCAGTCTAGTGTTCTGAATT+CGG + chr6.4:29611058-29611077 MS.gene93474:CDS 35.0%
!! AAAAGAAGCATTAGAGCATG+TGG - chr6.4:29610327-29610346 None:intergenic 35.0%
!! AAGTGTTTTTACGCATTTGC+TGG - chr6.4:29609365-29609384 None:intergenic 35.0%
!! AATCCCATCCAATTGACTTT+TGG - chr6.4:29610166-29610185 None:intergenic 35.0%
!! ACTTTTGGACGATAGCTTTA+TGG - chr6.4:29610151-29610170 None:intergenic 35.0%
!!! CTTTTGCATTGACTCTTTTG+AGG + chr6.4:29610342-29610361 MS.gene93474:CDS 35.0%
!!! GATTTTTTCCTCTCACCTTT+CGG - chr6.4:29610574-29610593 None:intergenic 35.0%
AAGTAGAGCTATTCCAGTCA+TGG + chr6.4:29609524-29609543 MS.gene93474:intron 40.0%
AATGGCTCATTCAACTGAGA+TGG + chr6.4:29610061-29610080 MS.gene93474:CDS 40.0%
ACCTTGATCTTCAACGGAAT+CGG - chr6.4:29608916-29608935 None:intergenic 40.0%
ACTTCCCCAACAATTCTTAG+AGG + chr6.4:29610088-29610107 MS.gene93474:CDS 40.0%
AGACTGAGCAGTAAAGATGT+TGG - chr6.4:29611045-29611064 None:intergenic 40.0%
AGTAGAGCTATTCCAGTCAT+GGG + chr6.4:29609525-29609544 MS.gene93474:intron 40.0%
ATTAAAGCAAGCCGTTGTTG+AGG - chr6.4:29610032-29610051 None:intergenic 40.0%
CGTCCAAAAGTCAATTGGAT+GGG + chr6.4:29610160-29610179 MS.gene93474:CDS 40.0%
CTCATCACCTGGATTCATAT+TGG - chr6.4:29611156-29611175 None:intergenic 40.0%
CTTCCCCAACAATTCTTAGA+GGG + chr6.4:29610089-29610108 MS.gene93474:CDS 40.0%
GAAAGAAGGAAGAAAACGAG+TGG - chr6.4:29608883-29608902 None:intergenic 40.0%
GATCAGTCCAATATGAATCC+AGG + chr6.4:29611146-29611165 MS.gene93474:CDS 40.0%
GCCTATCGTATCATCTATGA+CGG + chr6.4:29608855-29608874 MS.gene93474:CDS 40.0%
GCTATCGTCCAAAAGTCAAT+TGG + chr6.4:29610155-29610174 MS.gene93474:CDS 40.0%
GTAAAGCTGTTGGCAAATGT+CGG - chr6.4:29610945-29610964 None:intergenic 40.0%
GTTGAATGAGCCATTGAAGA+AGG - chr6.4:29610056-29610075 None:intergenic 40.0%
TCAATTGGATGGGATTACAC+AGG + chr6.4:29610170-29610189 MS.gene93474:CDS 40.0%
TCATAGATGATACGATAGGC+AGG - chr6.4:29608855-29608874 None:intergenic 40.0%
TCCGTCATAGATGATACGAT+AGG - chr6.4:29608859-29608878 None:intergenic 40.0%
TCGTCCAAAAGTCAATTGGA+TGG + chr6.4:29610159-29610178 MS.gene93474:CDS 40.0%
TTCACTCTTCACCTCAACAA+CGG + chr6.4:29610018-29610037 MS.gene93474:CDS 40.0%
!! ACTCTTTTGAGGGAAGCAAA+GGG + chr6.4:29610353-29610372 MS.gene93474:CDS 40.0%
!! ACTGATGAGTACTGATGTTG+TGG - chr6.4:29610683-29610702 None:intergenic 40.0%
!! GACGATAGCTTTATGGATAG+TGG - chr6.4:29610144-29610163 None:intergenic 40.0%
!!! CCGACAACCTTATTTTGAAG+AGG + chr6.4:29610515-29610534 MS.gene93474:intron 40.0%
ACGAATGTCGGTGAATGTTG+TGG - chr6.4:29611113-29611132 None:intergenic 45.0%
AGACTGAGCAGTAAAGCTGT+TGG - chr6.4:29610955-29610974 None:intergenic 45.0%
ATGAAATGCCGAAAGGTGAG+AGG + chr6.4:29610563-29610582 MS.gene93474:intron 45.0%
CCTTGATCTTCAACGGAATC+GGG - chr6.4:29608915-29608934 None:intergenic 45.0%
CGACAAGCTTGGAAATCCAT+CGG - chr6.4:29608830-29608849 None:intergenic 45.0%
GCAAATGTCGGTGAATGTTG+TGG - chr6.4:29610933-29610952 None:intergenic 45.0%
GCATTAGAGCATGTGGTAAC+TGG - chr6.4:29610320-29610339 None:intergenic 45.0%
GGATCAAATCACAACCGTAC+CGG + chr6.4:29608719-29608738 MS.gene93474:CDS 45.0%
GGGTTTAAGGGTTCTTGTGA+TGG + chr6.4:29610109-29610128 MS.gene93474:CDS 45.0%
TAGGTGAATGTTGTGGTGCA+TGG - chr6.4:29610836-29610855 None:intergenic 45.0%
! GTACTGATGTTGTGGTGCAT+GGG - chr6.4:29610675-29610694 None:intergenic 45.0%
!! AGTACTGATGTTGTGGTGCA+TGG - chr6.4:29610676-29610695 None:intergenic 45.0%
!! GACTCTTTTGAGGGAAGCAA+AGG + chr6.4:29610352-29610371 MS.gene93474:CDS 45.0%
ATAGGCAGGATCGACAAGCT+TGG - chr6.4:29608841-29608860 None:intergenic 50.0%
ATCTTCAACGGAATCGGGAG+TGG - chr6.4:29608910-29608929 None:intergenic 50.0%
CAAGCTTGGAAATCCATCGG+CGG - chr6.4:29608827-29608846 None:intergenic 50.0%
CCCGATTCCGTTGAAGATCA+AGG + chr6.4:29608912-29608931 MS.gene93474:intron 50.0%
GCTATTCCAGTCATGGGTCA+AGG + chr6.4:29609531-29609550 MS.gene93474:intron 50.0%
GGCTCATTCAACTGAGATGG+AGG + chr6.4:29610064-29610083 MS.gene93474:CDS 50.0%
TCGGGAGTGGAGAAGAAAGA+AGG - chr6.4:29608897-29608916 None:intergenic 50.0%
AATCCATCGGCGGTTGGAAG+AGG - chr6.4:29608817-29608836 None:intergenic 55.0%
ACAACCGTACCGGAGCAAAG+AGG + chr6.4:29608729-29608748 MS.gene93474:CDS 55.0%
AGTGCCTCTTTGCTCCGGTA+CGG - chr6.4:29608736-29608755 None:intergenic 55.0%
ATCCATCGGCGGTTGGAAGA+GGG - chr6.4:29608816-29608835 None:intergenic 55.0%
CTTGGAAATCCATCGGCGGT+TGG - chr6.4:29608823-29608842 None:intergenic 55.0%
ATCGGCGGTTGGAAGAGGGA+CGG - chr6.4:29608812-29608831 None:intergenic 60.0%
GGAGTGGACGGTGGCTTTCT+AGG - chr6.4:29608783-29608802 None:intergenic 60.0%
GTAGGGCCTTGACCCATGAC+TGG - chr6.4:29609540-29609559 None:intergenic 60.0%
GTGGACGGTGGCTTTCTAGG+CGG - chr6.4:29608780-29608799 None:intergenic 60.0%
TTGGAAGAGGGACGGGCGTA+AGG - chr6.4:29608804-29608823 None:intergenic 60.0%
! GTACCGGAGCAAAGAGGCAC+TGG + chr6.4:29608735-29608754 MS.gene93474:CDS 60.0%
AGAGGGACGGGCGTAAGGAG+TGG - chr6.4:29608799-29608818 None:intergenic 65.0%
CCGCCAGTGCCTCTTTGCTC+CGG - chr6.4:29608741-29608760 None:intergenic 65.0%
GACGGTGGCTTTCTAGGCGG+TGG - chr6.4:29608777-29608796 None:intergenic 65.0%
GGACGGGCGTAAGGAGTGGA+CGG - chr6.4:29608795-29608814 None:intergenic 65.0%
GTCCCTCTTCCAACCGCCGA+TGG + chr6.4:29608811-29608830 MS.gene93474:CDS 65.0%
TCGGCGGTTGGAAGAGGGAC+GGG - chr6.4:29608811-29608830 None:intergenic 65.0%
!! CCGGAGCAAAGAGGCACTGG+CGG + chr6.4:29608738-29608757 MS.gene93474:CDS 65.0%
CGGGCGTAAGGAGTGGACGG+TGG - chr6.4:29608792-29608811 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 29608717 29611187 29608717 ID=MS.gene93474
chr6.4 mRNA 29608717 29611187 29608717 ID=MS.gene93474.t1;Parent=MS.gene93474
chr6.4 exon 29608717 29608920 29608717 ID=MS.gene93474.t1.exon1;Parent=MS.gene93474.t1
chr6.4 CDS 29608717 29608920 29608717 ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4 exon 29610008 29610191 29610008 ID=MS.gene93474.t1.exon2;Parent=MS.gene93474.t1
chr6.4 CDS 29610008 29610191 29610008 ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4 exon 29610321 29610473 29610321 ID=MS.gene93474.t1.exon3;Parent=MS.gene93474.t1
chr6.4 CDS 29610321 29610473 29610321 ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4 exon 29610901 29611187 29610901 ID=MS.gene93474.t1.exon4;Parent=MS.gene93474.t1
chr6.4 CDS 29610901 29611187 29610901 ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
Gene Sequence

>MS.gene93474

ATGGATCAAATCACAACCGTACCGGAGCAAAGAGGCACTGGCGGCAAACTTCGTAAACCACCGCCTAGAAAGCCACCGTCCACTCCTTACGCCCGTCCCTCTTCCAACCGCCGATGGATTTCCAAGCTTGTCGATCCTGCCTATCGTATCATCTATGACGGAACCACTCGTTTTCTTCCTTCTTTCTTCTCCACTCCCGATTCCGTTGAAGATCAAGGTTCGTTTCTCTTTTCAATTTTCGCGCGTTTTTTTCTCAATTACGCAATTATGCTTTTATGGTATAGTATGATAACTAATTTCGGTTTTGACAGTAGAACCAAATTACCATTATTGTGATTGCGAACATTATTATAGTGATTAGAAAAATGTAATTAGTGAGTAGAAAATGTAATTAAACAATGTGAGTGGTTTAACTTCAGATTAATGACAGAATTAGTTTGCCTAGCAAACCCCTATATATATTTGAGAATATTTTTCTGAAAAATAAGTAAAAAGAAAATATTTTTGGTATTTTTAAAATATTTGAGAGAAAAATAAACTACTTAAAAACAAAAGAAATATATTGCAATTTTTGAGTAAAAAAAGAAAGAAATATATTGCAATTTAGTAAAGCGAAATTACCTTGTTGAAAAAGATCAATAATCTCCAGCAAATGCGTAAAAACACTTCATTGAACTTTGGGCAAGCGTAGAAGCAAAATTATGACAAACAATTAGAATTTCCTAACTCCTTCAATTTCCTCATTTGGTAATACAAGTTTCTTACACCATTGCAATTTGAGATTTATGCTCATGACGCTGTTTAAAAAAGTAGAGCTATTCCAGTCATGGGTCAAGGCCCTACTAATATATACCTATTTTATTCTTCAAAAATGTATAACTCTAATACCAATTTTTCGTTCCATTCATTTGAAATTTTAAGAGGATTATTCAGAATTTATTCAACTGTACTCCAAAATAAAGTTTTTTTAGAAAGGTACTCCAAAATCAAGATAGAATAATATTTTTTTTCCTTATTACTACTTTTTTTACTTAATCAAATTTACAATCAAAAAATATTTATTTAATTCAATTGATTTTTCGTGTGAATATCTTAAATTGATTTGAAATATTATTAACAAAGATTTATAATCAATCATAATTGATATCATTCTTTTTTATATTGATTTCTTCTTTTTTTACTTTATGTTTATTCTTTCTTTCCTCTTTTCTCATAGATGCAAAAACTTCTATATAAACGTTTTATTCTCTTTAAAGTTTCTTGAATATCAACTTTTTTATTCTCTTTGAAGTTTCTTGAGTTTCACTCTTCACCTCAACAACGGCTTGCTTTAATCCCTTCTTCAATGGCTCATTCAACTGAGATGGAGGCACTTCCCCAACAATTCTTAGAGGGTTTAAGGGTTCTTGTGATGGATCATGACACCACTATCCATAAAGCTATCGTCCAAAAGTCAATTGGATGGGATTACACAGGTTTGTTAATTAAATGTTGATACTATACTCAATTATAAATTAAATTTTGTTAACATGTGAAAGTCTTTCACTTATTGTAACAATTCTTAATTTTATGTATTTTTTTTTTTTTATGCTTGTTTGTTCCAGTTACCACATGCTCTAATGCTTCTTTTGCATTGACTCTTTTGAGGGAAGCAAAGGGTTGTTTTGATGTGATACTAATTGAAGAACAAATCTCAGACATGAATTCCTATGATTTTCTCCAACAAATTACCCAACAAATCAATATTCCTGTCATTAGTAAGAACATATGTACATAATTAATTGTATTATTATATCACCCGACAACCTTATTTTGAAGAGGTCAAATGAAGTGACAAAATTAAAGAATGAAATGCCGAAAGGTGAGAGGAAAAAATCAAAGCAGGATCAATGTCATCTACTCATCTTCCTACTGAAACACAATTAGGTCTTGAACTTGACCAAAATGTTAAAAATCCCATGCACCACAACATCAGTACTCATCAGTCTAATGTTCAGAATTTCGTCATACAATGTGACAACAATTCTCATGCTCCACAATATTCATCAAAATTGGCCAACATTTTTACTGATAAGTCTAATGTTTTCAATTCAATCATACAATGTGACAAAAACTACCATGCACCACAACATTCACCTACATTTACCAACATTTTTACTACTCAGTCTAATGTTATGAATTCAGTCATACAACATGACAATAATTCTCATGCACCACAACATTCACCGACATTTGCCAACAGCTTTACTGCTCAGTCTAGTGTTCCTAATTCAGTCATACAATGTGACAATAATTCTCATTCACCACAACATTCACCGACATTTGCCAACATCTTTACTGCTCAGTCTAGTGTTCTGAATTCGGCCATACAATGTGACAATAATTCTCATGCACCACAACATTCACCGACATTCGTCAATAATTTTACTGATCAGTCCAATATGAATCCAGGTGATGAGTTCTTTAATTGA
Protein sequence

>MS.gene93474.t1

MDQITTVPEQRGTGGKLRKPPPRKPPSTPYARPSSNRRWISKLVDPAYRIIYDGTTRFLPSFFSTPDSFLEFHSSPQQRLALIPSSMAHSTEMEALPQQFLEGLRVLVMDHDTTIHKAIVQKSIGWDYTVTTCSNASFALTLLREAKGCFDVILIEEQISDMNSYDFLQQITQQINIPVIIIQHDNNSHAPQHSPTFANSFTAQSSVPNSVIQCDNNSHSPQHSPTFANIFTAQSSVLNSAIQCDNNSHAPQHSPTFVNNFTDQSNMNPGDEFFN