AlfalfaGEDB | MS.gene93474

M. sativa cultivar XinJiangDaYe / MS.gene93474

KEGG: -
GO: GO:0000160 GO:0007165 GO:0008150 GO:0009987 GO:0035556 GO:0050789 GO:0050794 GO:0065007
PFAM: PF00072.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93474.t1	RHN51648.1	84.6	104	16	0	87	190	1	104	2.40E-40	176

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93474.t1	Q8L9Y3	39.6	91	54	1	99	188	6	96	3.7e-10	67.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93474.t1	A0A072U908	84.6	104	16	0	87	190	1	104	1.7e-40	176.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene93474.t1	TR	Others

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93474.t1	MTR_6g045327	84.615	104	16	0	87	190	1	104	9.76e-56	184
MS.gene93474.t1	MTR_6g045327	61.475	122	25	1	176	275	266	387	7.69e-37	134
MS.gene93474.t1	MTR_2g072590	92.647	68	5	0	1	68	1	68	8.11e-37	138
MS.gene93474.t1	MTR_8g093040	54.545	110	50	0	87	196	1	110	5.22e-32	119
MS.gene93474.t1	MTR_7g033910	81.944	72	9	1	1	68	1	72	3.96e-24	102
MS.gene93474.t1	MTR_1g032570	42.453	106	54	1	83	188	1	99	7.47e-20	89.4
MS.gene93474.t1	MTR_4g021760	45.556	90	48	1	97	186	8	96	1.12e-17	81.6
MS.gene93474.t1	MTR_6g016850	48.193	83	42	1	99	181	8	89	6.88e-17	76.6
MS.gene93474.t1	MTR_4g021790	46.512	86	45	1	100	185	10	94	2.20e-16	77.4
MS.gene93474.t1	MTR_5g055260	49.383	81	40	1	100	180	10	89	2.25e-16	77.0

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93474.t1	AT2G01760	39.560	91	54	1	99	188	6	96	2.98e-13	69.3
MS.gene93474.t1	AT5G20200	56.140	57	21	1	12	64	23	79	5.82e-13	69.3
MS.gene93474.t1	AT1G67710	36.047	86	55	0	103	188	10	95	5.34e-12	66.2
MS.gene93474.t1	AT3G16857	33.333	93	62	0	94	186	27	119	8.30e-12	65.5
MS.gene93474.t1	AT3G16857	33.333	93	62	0	94	186	27	119	9.43e-12	65.5

Showing 1 to 5 of 5 entries

Previous1Next

Find 72 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCATTAGAGCATG+TGG	0.613637	6.4:-29610324	None:intergenic
AAACCCTCTAAGAATTGTTG+GGG	0.603847	6.4:-29610092	None:intergenic
AACAATTCTTAGAGGGTTTA+AGG	0.118099	6.4:+29610096	MS.gene93474:CDS
AATCCATCGGCGGTTGGAAG+AGG	0.491369	6.4:-29608814	None:intergenic
AATCCCATCCAATTGACTTT+TGG	0.296296	6.4:-29610163	None:intergenic
AATGGCTCATTCAACTGAGA+TGG	0.540861	6.4:+29610061	MS.gene93474:CDS
AATTTGTTGGAGAAAATCAT+AGG	0.440238	6.4:-29610423	None:intergenic
ACAACCGTACCGGAGCAAAG+AGG	0.697583	6.4:+29608729	MS.gene93474:CDS
ACAATTCTTAGAGGGTTTAA+GGG	0.385698	6.4:+29610097	MS.gene93474:CDS
ACCTTGATCTTCAACGGAAT+CGG	0.389512	6.4:-29608913	None:intergenic

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTCTTAGAGGGTTTA+AGG	+	chr6.4:29610096-29610115	MS.gene93474:CDS	30.0%
AATGTTCGCAATCACAATAA+TGG	-	chr6.4:29609044-29609063	None:intergenic	30.0%
ACAATTCTTAGAGGGTTTAA+GGG	+	chr6.4:29610097-29610116	MS.gene93474:CDS	30.0%
AGACTGAGTAGTAAAAATGT+TGG	-	chr6.4:29610865-29610884	None:intergenic	30.0%
CATATGTTCTTACTAATGAC+AGG	-	chr6.4:29610467-29610486	None:intergenic	30.0%
CATTTGACCTCTTCAAAATA+AGG	-	chr6.4:29610525-29610544	None:intergenic	30.0%
GAAACTTGTATTACCAAATG+AGG	-	chr6.4:29609458-29609477	None:intergenic	30.0%
GCATAAATCTCAAATTGCAA+TGG	-	chr6.4:29609486-29609505	None:intergenic	30.0%
TCACATTGTATGACTGAATT+AGG	-	chr6.4:29610984-29611003	None:intergenic	30.0%
TTAAAGAATGAAATGCCGAA+AGG	+	chr6.4:29610556-29610575	MS.gene93474:intron	30.0%

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	29608717	29611187	29608717	ID=MS.gene93474
chr6.4	mRNA	29608717	29611187	29608717	ID=MS.gene93474.t1;Parent=MS.gene93474
chr6.4	exon	29608717	29608920	29608717	ID=MS.gene93474.t1.exon1;Parent=MS.gene93474.t1
chr6.4	CDS	29608717	29608920	29608717	ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4	exon	29610008	29610191	29610008	ID=MS.gene93474.t1.exon2;Parent=MS.gene93474.t1
chr6.4	CDS	29610008	29610191	29610008	ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4	exon	29610321	29610473	29610321	ID=MS.gene93474.t1.exon3;Parent=MS.gene93474.t1
chr6.4	CDS	29610321	29610473	29610321	ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1
chr6.4	exon	29610901	29611187	29610901	ID=MS.gene93474.t1.exon4;Parent=MS.gene93474.t1
chr6.4	CDS	29610901	29611187	29610901	ID=cds.MS.gene93474.t1;Parent=MS.gene93474.t1

Gene Sequence

>MS.gene93474

ATGGATCAAATCACAACCGTACCGGAGCAAAGAGGCACTGGCGGCAAACTTCGTAAACCACCGCCTAGAAAGCCACCGTCCACTCCTTACGCCCGTCCCTCTTCCAACCGCCGATGGATTTCCAAGCTTGTCGATCCTGCCTATCGTATCATCTATGACGGAACCACTCGTTTTCTTCCTTCTTTCTTCTCCACTCCCGATTCCGTTGAAGATCAAGGTTCGTTTCTCTTTTCAATTTTCGCGCGTTTTTTTCTCAATTACGCAATTATGCTTTTATGGTATAGTATGATAACTAATTTCGGTTTTGACAGTAGAACCAAATTACCATTATTGTGATTGCGAACATTATTATAGTGATTAGAAAAATGTAATTAGTGAGTAGAAAATGTAATTAAACAATGTGAGTGGTTTAACTTCAGATTAATGACAGAATTAGTTTGCCTAGCAAACCCCTATATATATTTGAGAATATTTTTCTGAAAAATAAGTAAAAAGAAAATATTTTTGGTATTTTTAAAATATTTGAGAGAAAAATAAACTACTTAAAAACAAAAGAAATATATTGCAATTTTTGAGTAAAAAAAGAAAGAAATATATTGCAATTTAGTAAAGCGAAATTACCTTGTTGAAAAAGATCAATAATCTCCAGCAAATGCGTAAAAACACTTCATTGAACTTTGGGCAAGCGTAGAAGCAAAATTATGACAAACAATTAGAATTTCCTAACTCCTTCAATTTCCTCATTTGGTAATACAAGTTTCTTACACCATTGCAATTTGAGATTTATGCTCATGACGCTGTTTAAAAAAGTAGAGCTATTCCAGTCATGGGTCAAGGCCCTACTAATATATACCTATTTTATTCTTCAAAAATGTATAACTCTAATACCAATTTTTCGTTCCATTCATTTGAAATTTTAAGAGGATTATTCAGAATTTATTCAACTGTACTCCAAAATAAAGTTTTTTTAGAAAGGTACTCCAAAATCAAGATAGAATAATATTTTTTTTCCTTATTACTACTTTTTTTACTTAATCAAATTTACAATCAAAAAATATTTATTTAATTCAATTGATTTTTCGTGTGAATATCTTAAATTGATTTGAAATATTATTAACAAAGATTTATAATCAATCATAATTGATATCATTCTTTTTTATATTGATTTCTTCTTTTTTTACTTTATGTTTATTCTTTCTTTCCTCTTTTCTCATAGATGCAAAAACTTCTATATAAACGTTTTATTCTCTTTAAAGTTTCTTGAATATCAACTTTTTTATTCTCTTTGAAGTTTCTTGAGTTTCACTCTTCACCTCAACAACGGCTTGCTTTAATCCCTTCTTCAATGGCTCATTCAACTGAGATGGAGGCACTTCCCCAACAATTCTTAGAGGGTTTAAGGGTTCTTGTGATGGATCATGACACCACTATCCATAAAGCTATCGTCCAAAAGTCAATTGGATGGGATTACACAGGTTTGTTAATTAAATGTTGATACTATACTCAATTATAAATTAAATTTTGTTAACATGTGAAAGTCTTTCACTTATTGTAACAATTCTTAATTTTATGTATTTTTTTTTTTTTATGCTTGTTTGTTCCAGTTACCACATGCTCTAATGCTTCTTTTGCATTGACTCTTTTGAGGGAAGCAAAGGGTTGTTTTGATGTGATACTAATTGAAGAACAAATCTCAGACATGAATTCCTATGATTTTCTCCAACAAATTACCCAACAAATCAATATTCCTGTCATTAGTAAGAACATATGTACATAATTAATTGTATTATTATATCACCCGACAACCTTATTTTGAAGAGGTCAAATGAAGTGACAAAATTAAAGAATGAAATGCCGAAAGGTGAGAGGAAAAAATCAAAGCAGGATCAATGTCATCTACTCATCTTCCTACTGAAACACAATTAGGTCTTGAACTTGACCAAAATGTTAAAAATCCCATGCACCACAACATCAGTACTCATCAGTCTAATGTTCAGAATTTCGTCATACAATGTGACAACAATTCTCATGCTCCACAATATTCATCAAAATTGGCCAACATTTTTACTGATAAGTCTAATGTTTTCAATTCAATCATACAATGTGACAAAAACTACCATGCACCACAACATTCACCTACATTTACCAACATTTTTACTACTCAGTCTAATGTTATGAATTCAGTCATACAACATGACAATAATTCTCATGCACCACAACATTCACCGACATTTGCCAACAGCTTTACTGCTCAGTCTAGTGTTCCTAATTCAGTCATACAATGTGACAATAATTCTCATTCACCACAACATTCACCGACATTTGCCAACATCTTTACTGCTCAGTCTAGTGTTCTGAATTCGGCCATACAATGTGACAATAATTCTCATGCACCACAACATTCACCGACATTCGTCAATAATTTTACTGATCAGTCCAATATGAATCCAGGTGATGAGTTCTTTAATTGA

Protein sequence

>MS.gene93474.t1

MDQITTVPEQRGTGGKLRKPPPRKPPSTPYARPSSNRRWISKLVDPAYRIIYDGTTRFLPSFFSTPDSFLEFHSSPQQRLALIPSSMAHSTEMEALPQQFLEGLRVLVMDHDTTIHKAIVQKSIGWDYTVTTCSNASFALTLLREAKGCFDVILIEEQISDMNSYDFLQQITQQINIPVIIIQHDNNSHAPQHSPTFANSFTAQSSVPNSVIQCDNNSHSPQHSPTFANIFTAQSSVLNSAIQCDNNSHAPQHSPTFVNNFTDQSNMNPGDEFFN