AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93624

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93624.t1 MTR_5g036670 91.837 147 12 0 18 164 28 174 4.45e-85 274
MS.gene93624.t1 MTR_8g062700 60.345 174 64 2 9 181 17 186 7.69e-61 205
MS.gene93624.t1 MTR_8g062700 60.345 174 64 2 9 181 17 186 7.76e-61 205
MS.gene93624.t1 MTR_6g008970 62.179 156 55 1 26 181 56 207 1.63e-55 190
MS.gene93624.t1 MTR_6g008995 64.444 135 46 2 27 161 31 163 1.14e-48 165
MS.gene93624.t1 MTR_6g008995 64.486 107 36 2 55 161 2 106 5.20e-37 133
MS.gene93624.t1 MTR_8g062350 37.912 182 74 3 24 166 5 186 3.47e-30 110
MS.gene93624.t1 MTR_1g105955 44.444 126 63 2 26 151 9 127 3.26e-26 99.8
MS.gene93624.t1 MTR_1g105955 52.174 69 33 0 33 101 95 163 5.82e-18 78.2
MS.gene93624.t1 MTR_1g105960 59.740 77 31 0 34 110 2 78 9.88e-26 96.3
MS.gene93624.t1 MTR_7g013410 44.167 120 56 3 37 153 2 113 6.33e-25 95.5
MS.gene93624.t1 MTR_1g104940 56.471 85 36 1 33 117 14 97 1.42e-23 91.3
MS.gene93624.t1 MTR_1g104960 34.646 127 83 0 32 158 12 138 1.04e-20 85.5
MS.gene93624.t1 MTR_1g104960 48.571 70 36 0 34 103 100 169 2.69e-16 73.9
MS.gene93624.t1 MTR_3g006065 55.696 79 34 1 25 102 82 160 1.17e-20 85.5
MS.gene93624.t1 MTR_3g006065 37.097 124 73 3 27 149 2 121 1.97e-16 74.3
MS.gene93624.t1 MTR_3g006150 55.696 79 34 1 25 102 82 160 1.68e-20 84.3
MS.gene93624.t1 MTR_3g006150 37.097 124 73 3 27 149 2 121 4.16e-16 72.8
MS.gene93624.t1 MTR_4g133470 47.059 102 43 2 4 105 154 244 2.36e-20 86.3
MS.gene93624.t1 MTR_4g133470 39.316 117 62 2 32 148 11 118 3.83e-17 77.4
MS.gene93624.t1 MTR_4g133470 31.061 132 86 2 21 152 79 205 3.81e-13 66.6
MS.gene93624.t1 MTR_4g133300 53.659 82 36 1 24 105 165 244 4.27e-20 85.5
MS.gene93624.t1 MTR_4g133300 40.171 117 61 2 32 148 11 118 8.66e-18 79.3
MS.gene93624.t1 MTR_4g133300 31.818 132 85 2 21 152 79 205 3.19e-14 69.7
MS.gene93624.t1 MTR_3g006125 50.000 84 41 1 23 105 170 253 1.03e-19 84.7
MS.gene93624.t1 MTR_3g006125 34.641 153 90 4 27 173 83 231 1.32e-14 70.9
MS.gene93624.t1 MTR_1g023820 85.366 41 6 0 63 103 17 57 5.04e-18 77.0
MS.gene93624.t1 MTR_0091s0080 60.000 70 21 2 145 207 232 301 1.14e-17 80.9
MS.gene93624.t1 MTR_3g006105 50.000 80 39 1 23 101 89 168 1.20e-17 77.4
MS.gene93624.t1 MTR_3g006105 37.209 129 75 3 27 149 2 130 1.84e-16 74.3
MS.gene93624.t1 MTR_3g006185 50.649 77 37 1 26 101 91 167 1.64e-17 77.0
MS.gene93624.t1 MTR_3g006185 49.351 77 38 1 27 102 2 78 1.76e-13 66.2
MS.gene93624.t1 MTR_1g105010 44.048 84 46 1 26 108 8 91 2.30e-16 72.4
MS.gene93624.t1 MTR_2g097830 41.584 101 50 2 32 132 69 160 2.04e-15 71.2
MS.gene93624.t1 MTR_7g089490 45.833 72 39 0 30 101 13 84 3.80e-15 69.3
MS.gene93624.t1 MTR_1g104937 38.462 78 48 0 31 108 10 87 1.72e-14 67.4
MS.gene93624.t1 MTR_1g093310 50.000 82 33 2 28 107 2 77 4.17e-14 65.5
MS.gene93624.t1 MTR_1g109550 34.167 120 69 2 30 149 13 122 5.53e-14 66.6
MS.gene93624.t1 MTR_1g104980 32.456 114 62 1 35 148 1 99 1.41e-13 66.6
MS.gene93624.t1 MTR_1g104980 41.333 75 44 0 36 110 73 147 3.50e-12 62.8
MS.gene93624.t1 MTR_1g091047 46.269 67 35 1 32 97 8 74 1.87e-12 60.8
MS.gene93624.t1 MTR_7g013380 33.636 110 63 3 47 151 115 219 5.97e-12 63.9
MS.gene93624.t1 MTR_3g006010 48.052 77 39 1 27 102 2 78 7.05e-12 63.9
MS.gene93624.t1 MTR_8g064930 58.696 46 18 1 160 204 5 50 4.22e-11 56.6
MS.gene93624.t1 MTR_3g006000 47.945 73 35 3 33 103 7 78 9.35e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93624.t1 AT1G70060 75.182 137 33 1 26 161 7 143 3.46e-59 200
MS.gene93624.t1 AT1G70060 75.182 137 33 1 26 161 7 143 3.46e-59 200
MS.gene93624.t1 AT1G24190 72.059 136 38 0 26 161 7 142 6.68e-58 197
MS.gene93624.t1 AT1G24190 72.059 136 38 0 26 161 7 142 6.87e-58 197
MS.gene93624.t1 AT1G24190 72.059 136 38 0 26 161 7 142 7.28e-58 196
MS.gene93624.t1 AT3G01320 64.748 139 48 1 23 161 47 184 1.68e-51 178
MS.gene93624.t1 AT3G01320 64.748 139 48 1 23 161 47 184 1.85e-51 178
MS.gene93624.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.04e-48 169
MS.gene93624.t1 AT5G15020 64.444 135 46 1 27 161 46 178 4.29e-48 169
MS.gene93624.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.32e-48 169
MS.gene93624.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.37e-48 169
MS.gene93624.t1 AT1G59890 58.599 157 59 2 9 161 17 171 4.53e-48 168
MS.gene93624.t1 AT5G15020 64.444 135 46 1 27 161 46 178 4.72e-48 168
MS.gene93624.t1 AT1G24200 57.353 136 55 1 26 161 7 139 1.50e-47 155
MS.gene93624.t1 AT1G10450 62.595 131 47 1 31 161 82 210 3.44e-46 163
MS.gene93624.t1 AT1G10450 62.595 131 47 1 31 161 31 159 3.55e-46 163
MS.gene93624.t1 AT1G10450 62.595 131 47 1 31 161 31 159 3.55e-46 163
MS.gene93624.t1 AT1G70030 47.794 136 69 2 26 161 4 137 1.01e-34 121
MS.gene93624.t1 AT5G15025 53.398 103 44 1 9 107 19 121 8.08e-27 99.8
MS.gene93624.t1 AT1G70030 45.968 124 64 2 27 148 16 138 2.88e-25 96.3
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.34e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.38e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 237 316 4.45e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.49e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.49e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.51e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.58e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.62e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.62e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.64e-25 102
MS.gene93624.t1 AT4G12020 61.728 81 30 1 29 109 304 383 4.86e-25 102
MS.gene93624.t1 AT1G24230 38.519 135 78 3 28 161 81 211 6.37e-25 98.2
MS.gene93624.t1 AT1G24230 35.537 121 62 3 29 148 10 115 1.78e-16 75.9
MS.gene93624.t1 AT1G70030 50.000 102 50 1 27 128 16 116 1.13e-24 94.4
MS.gene93624.t1 AT5G35610 40.816 147 72 3 26 161 3 145 4.16e-23 91.3
MS.gene93624.t1 AT1G27280 33.083 133 88 1 30 161 78 210 1.83e-20 85.9
MS.gene93624.t1 AT1G24250 35.971 139 60 3 21 153 103 218 2.23e-18 80.9
MS.gene93624.t1 AT1G27220 48.649 74 38 0 28 101 9 82 2.56e-18 79.3
MS.gene93624.t1 AT1G27250 43.011 93 47 1 8 100 2 88 3.46e-18 77.8
MS.gene93624.t1 AT1G23810 33.835 133 64 2 30 161 106 215 1.54e-16 75.9
MS.gene93624.t1 AT1G27260 33.884 121 72 2 32 146 2 120 8.57e-16 73.6
MS.gene93624.t1 AT1G27260 30.827 133 68 2 30 161 90 199 4.08e-14 68.9
MS.gene93624.t1 AT1G24210 32.558 129 65 3 23 150 4 111 8.93e-16 72.0
MS.gene93624.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene93624.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene93624.t1 AT5G15040 44.444 72 40 0 36 107 6 77 1.48e-14 66.6
MS.gene93624.t1 AT1G27240 29.787 141 76 5 30 148 11 150 6.84e-11 59.3

Find 45 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGTTTACAAGTCATTTA+TGG 0.140196 1.3:-72799684 MS.gene93624:CDS
CTCATGGCCCTTTGACAAAA+AGG 0.252815 1.3:+72799917 None:intergenic
TAAGATCAAGTTTCAAGGTC+TGG 0.372422 1.3:-72800261 MS.gene93624:intron
TCTTTGTAGACCAGGGTGAT+AGG 0.392252 1.3:+72799629 None:intergenic
GAGTTATGTGAACACGATAA+AGG 0.392834 1.3:-72799829 MS.gene93624:intron
GACCTCAAACATATTGTTGT+TGG 0.414273 1.3:+72799276 None:intergenic
TTAATCAAACCTGAGATTGT+TGG 0.433476 1.3:+72800390 None:intergenic
ACCTCAAACATATTGTTGTT+GGG 0.434653 1.3:+72799277 None:intergenic
TTCTCTAAGATCAAGTTTCA+AGG 0.443202 1.3:-72800266 MS.gene93624:intron
GAAGGGCAAGGTTTACTTAA+GGG 0.444052 1.3:-72799239 MS.gene93624:CDS
AGAAGGGCAAGGTTTACTTA+AGG 0.461904 1.3:-72799240 MS.gene93624:CDS
CACATACCTCTTTGTAGACC+AGG 0.470385 1.3:+72799621 None:intergenic
CTCAAAACAGGACGGCATCC+TGG 0.472527 1.3:+72799342 None:intergenic
AGTCATAGAGACTTGATCTT+GGG 0.473990 1.3:-72799948 MS.gene93624:CDS
AAGATCAAGTTTCAAGGTCT+GGG 0.474264 1.3:-72800260 MS.gene93624:CDS
CAACCCATACTCCTCAAAAC+AGG 0.481177 1.3:+72799330 None:intergenic
TGCCCTTCTTCTTATCGACT+CGG 0.487544 1.3:+72799254 None:intergenic
TTTATGCAGACTCGGTTTCA+GGG 0.487740 1.3:-72799713 MS.gene93624:intron
TCTACCGTGCCAACAATCTC+AGG 0.498656 1.3:-72800399 MS.gene93624:intron
TCCCAACAACAATATGTTTG+AGG 0.507864 1.3:-72799278 MS.gene93624:CDS
AAGTCATAGAGACTTGATCT+TGG 0.513611 1.3:-72799949 MS.gene93624:CDS
AGATAAGAAGGAAAAGTATG+AGG 0.539361 1.3:-72800157 MS.gene93624:CDS
GTGTTTAATAGGACAAGGCC+AGG 0.549799 1.3:-72799360 MS.gene93624:intron
TTGCTCATCCTCAGACGAAA+GGG 0.552798 1.3:+72799890 None:intergenic
TGAGATTACCCTTTCGTCTG+AGG 0.555293 1.3:-72799898 MS.gene93624:CDS
GGTCCGAGTCGATAAGAAGA+AGG 0.560540 1.3:-72799257 MS.gene93624:CDS
GGCAAGGTTTACTTAAGGGA+CGG 0.564135 1.3:-72799235 MS.gene93624:CDS
CATATTGAATACGTACAGAA+AGG 0.566699 1.3:-72799660 MS.gene93624:CDS
GGGCAACCGCCGAAGCGAGA+TGG 0.572379 1.3:-72800240 MS.gene93624:CDS
AGCATATCTCAAGGCGGTCA+AGG 0.575940 1.3:-72800190 MS.gene93624:CDS
GACCGCCTTGAGATATGCTA+AGG 0.576633 1.3:+72800194 None:intergenic
CAGACGAAAGGGTAATCTCA+TGG 0.592774 1.3:+72799901 None:intergenic
GTTGCTCATCCTCAGACGAA+AGG 0.601293 1.3:+72799889 None:intergenic
TGAAAGATTGCAAAGCACAA+AGG 0.611759 1.3:-72800119 MS.gene93624:intron
CAAACCTGAGATTGTTGGCA+CGG 0.613924 1.3:+72800395 None:intergenic
GTCCGAGTCGATAAGAAGAA+GGG 0.622235 1.3:-72799256 MS.gene93624:CDS
ATTTGTAGAGTTGATACTGA+TGG 0.633224 1.3:-72800002 MS.gene93624:intron
GGAAAGTAAGCCTATCACCC+TGG 0.646683 1.3:-72799639 MS.gene93624:CDS
TGATGCCTTAGCATATCTCA+AGG 0.655569 1.3:-72800199 MS.gene93624:CDS
AGTCGATAAGAAGAAGGGCA+AGG 0.674503 1.3:-72799251 MS.gene93624:CDS
TATCACCCTGGTCTACAAAG+AGG 0.680013 1.3:-72799627 MS.gene93624:intron
ACATACCTCTTTGTAGACCA+GGG 0.680303 1.3:+72799622 None:intergenic
CCATACTCCTCAAAACAGGA+CGG 0.704051 1.3:+72799334 None:intergenic
TGGTGTCGTTGAAAGAGTGA+AGG 0.705045 1.3:-72799982 MS.gene93624:CDS
TGCCTTAGCATATCTCAAGG+CGG 0.760016 1.3:-72800196 MS.gene93624:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGTTTGTGTTTAAT+AGG - chr1.3:72800268-72800287 MS.gene93624:intron 15.0%
!!! GTTGTTTTTGTATATATATT+GGG - chr1.3:72799562-72799581 MS.gene93624:intron 15.0%
!! ATATATATACAAAAACAACG+TGG + chr1.3:72799561-72799580 None:intergenic 20.0%
!! TATAATGTAGTGTTCAAATT+TGG - chr1.3:72800220-72800239 MS.gene93624:CDS 20.0%
!!! AATTGATTTGTTTATCCTTT+TGG - chr1.3:72799611-72799630 MS.gene93624:intron 20.0%
!!! CGTTGTTTTTGTATATATAT+TGG - chr1.3:72799561-72799580 MS.gene93624:intron 20.0%
!!! TAAAATTCAACCTTCTTTTT+TGG + chr1.3:72799781-72799800 None:intergenic 20.0%
! TAGAATGTTTGTGAGTTTAA+TGG - chr1.3:72799835-72799854 MS.gene93624:CDS 25.0%
! TCATGTTTACAAGTCATTTA+TGG - chr1.3:72799955-72799974 MS.gene93624:CDS 25.0%
! TTTGTATATATATTGGGAGA+GGG - chr1.3:72799568-72799587 MS.gene93624:intron 25.0%
!! ATTTAACACCTTTTTGTCAA+AGG - chr1.3:72799714-72799733 MS.gene93624:intron 25.0%
!! TTTAACACCTTTTTGTCAAA+GGG - chr1.3:72799715-72799734 MS.gene93624:intron 25.0%
!! TTTTGTATATATATTGGGAG+AGG - chr1.3:72799567-72799586 MS.gene93624:intron 25.0%
!!! AGTTTTAGTTTTGAGCTTAA+TGG - chr1.3:72799897-72799916 MS.gene93624:CDS 25.0%
!!! GGATATTTTTCAAGATAAGA+AGG - chr1.3:72799470-72799489 MS.gene93624:intron 25.0%
CATATTGAATACGTACAGAA+AGG - chr1.3:72799979-72799998 MS.gene93624:CDS 30.0%
TCATTTCTTTATTGCTCCTT+TGG + chr1.3:72799297-72799316 None:intergenic 30.0%
TGTTTGTGTTTAATAGGACA+AGG - chr1.3:72800274-72800293 MS.gene93624:intron 30.0%
TTAATCAAACCTGAGATTGT+TGG + chr1.3:72799252-72799271 None:intergenic 30.0%
TTGAGCTTGATCTTATCATA+TGG + chr1.3:72799336-72799355 None:intergenic 30.0%
TTGTATATATATTGGGAGAG+GGG - chr1.3:72799569-72799588 MS.gene93624:intron 30.0%
! ACCTCAAACATATTGTTGTT+GGG + chr1.3:72800365-72800384 None:intergenic 30.0%
! AGATAAGAAGGAAAAGTATG+AGG - chr1.3:72799482-72799501 MS.gene93624:intron 30.0%
!! ATTTGTAGAGTTGATACTGA+TGG - chr1.3:72799637-72799656 MS.gene93624:CDS 30.0%
!! TTCTCTAAGATCAAGTTTCA+AGG - chr1.3:72799373-72799392 MS.gene93624:intron 30.0%
AACTCTACAAATGCACCAAA+AGG + chr1.3:72799629-72799648 None:intergenic 35.0%
AAGATCAAGTTTCAAGGTCT+GGG - chr1.3:72799379-72799398 MS.gene93624:intron 35.0%
AAGTCATAGAGACTTGATCT+TGG - chr1.3:72799690-72799709 MS.gene93624:CDS 35.0%
AGTCATAGAGACTTGATCTT+GGG - chr1.3:72799691-72799710 MS.gene93624:CDS 35.0%
ATAAACCCTTCAAGAAGATC+CGG + chr1.3:72800177-72800196 None:intergenic 35.0%
CACAACAATATGTCAAGTAC+TGG + chr1.3:72800097-72800116 None:intergenic 35.0%
GACCTCAAACATATTGTTGT+TGG + chr1.3:72800366-72800385 None:intergenic 35.0%
GAGTTATGTGAACACGATAA+AGG - chr1.3:72799810-72799829 MS.gene93624:intron 35.0%
GTCAGGAAAATCTGTAATGT+TGG - chr1.3:72800049-72800068 MS.gene93624:intron 35.0%
TAAGATCAAGTTTCAAGGTC+TGG - chr1.3:72799378-72799397 MS.gene93624:intron 35.0%
TCCCAACAACAATATGTTTG+AGG - chr1.3:72800361-72800380 MS.gene93624:intron 35.0%
TGAAAGATTGCAAAGCACAA+AGG - chr1.3:72799520-72799539 MS.gene93624:intron 35.0%
! AAAGTATGAGGACTTTTTGG+AGG - chr1.3:72799494-72799513 MS.gene93624:intron 35.0%
!! AACAATATGTCAAGTACTGG+AGG + chr1.3:72800094-72800113 None:intergenic 35.0%
!! GGAAAAGTATGAGGACTTTT+TGG - chr1.3:72799491-72799510 MS.gene93624:intron 35.0%
!!! TCAACCTTCTTTTTTGGTTG+AGG + chr1.3:72799775-72799794 None:intergenic 35.0%
AATCATGATTGCACTTCTCC+AGG - chr1.3:72800128-72800147 MS.gene93624:CDS 40.0%
ACATACCTCTTTGTAGACCA+GGG + chr1.3:72800020-72800039 None:intergenic 40.0%
AGAAGGGCAAGGTTTACTTA+AGG - chr1.3:72800399-72800418 MS.gene93624:intron 40.0%
GAAACCGAGTCTGCATAAAA+AGG + chr1.3:72799925-72799944 None:intergenic 40.0%
GAAGGGCAAGGTTTACTTAA+GGG - chr1.3:72800400-72800419 MS.gene93624:CDS 40.0%
GATCAAGCTCAACATGATTG+TGG - chr1.3:72799344-72799363 MS.gene93624:CDS 40.0%
GCAACCTCAACCAAAAAAGA+AGG - chr1.3:72799768-72799787 MS.gene93624:intron 40.0%
TAAACCCTTCAAGAAGATCC+GGG + chr1.3:72800176-72800195 None:intergenic 40.0%
TACTTAGTGCTTAGAGCCAA+AGG - chr1.3:72799278-72799297 MS.gene93624:CDS 40.0%
TGATGCCTTAGCATATCTCA+AGG - chr1.3:72799440-72799459 MS.gene93624:intron 40.0%
! AGGTATGTGCTGTTATAGTC+AGG - chr1.3:72800032-72800051 MS.gene93624:intron 40.0%
! AGTTTTTGACCATCTCGCTT+CGG + chr1.3:72799411-72799430 None:intergenic 40.0%
! GGTTCCTTTTTATGCAGACT+CGG - chr1.3:72799918-72799937 MS.gene93624:CDS 40.0%
! TTTATGCAGACTCGGTTTCA+GGG - chr1.3:72799926-72799945 MS.gene93624:CDS 40.0%
!! GTTCAAATTTGGTGCTGTGT+GGG - chr1.3:72800231-72800250 MS.gene93624:CDS 40.0%
!! TGTTCAAATTTGGTGCTGTG+TGG - chr1.3:72800230-72800249 MS.gene93624:CDS 40.0%
!! TTCAAATTTGGTGCTGTGTG+GGG - chr1.3:72800232-72800251 MS.gene93624:CDS 40.0%
!! TTTTATGCAGACTCGGTTTC+AGG - chr1.3:72799925-72799944 MS.gene93624:CDS 40.0%
AGTCGATAAGAAGAAGGGCA+AGG - chr1.3:72800388-72800407 MS.gene93624:intron 45.0%
CAAACCTGAGATTGTTGGCA+CGG + chr1.3:72799247-72799266 None:intergenic 45.0%
CAACCCATACTCCTCAAAAC+AGG + chr1.3:72800312-72800331 None:intergenic 45.0%
CACATACCTCTTTGTAGACC+AGG + chr1.3:72800021-72800040 None:intergenic 45.0%
CAGACGAAAGGGTAATCTCA+TGG + chr1.3:72799741-72799760 None:intergenic 45.0%
CCATACTCCTCAAAACAGGA+CGG + chr1.3:72800308-72800327 None:intergenic 45.0%
CTCATGGCCCTTTGACAAAA+AGG + chr1.3:72799725-72799744 None:intergenic 45.0%
GGCAAGGTTTACTTAAGGGA+CGG - chr1.3:72800404-72800423 MS.gene93624:CDS 45.0%
GTCCGAGTCGATAAGAAGAA+GGG - chr1.3:72800383-72800402 MS.gene93624:intron 45.0%
GTGTTTAATAGGACAAGGCC+AGG - chr1.3:72800279-72800298 MS.gene93624:intron 45.0%
TATCACCCTGGTCTACAAAG+AGG - chr1.3:72800012-72800031 MS.gene93624:intron 45.0%
TCTTTGTAGACCAGGGTGAT+AGG + chr1.3:72800013-72800032 None:intergenic 45.0%
TGAGATTACCCTTTCGTCTG+AGG - chr1.3:72799741-72799760 MS.gene93624:intron 45.0%
TGCCTTAGCATATCTCAAGG+CGG - chr1.3:72799443-72799462 MS.gene93624:intron 45.0%
TTGCTCATCCTCAGACGAAA+GGG + chr1.3:72799752-72799771 None:intergenic 45.0%
! TGCCCTTCTTCTTATCGACT+CGG + chr1.3:72800388-72800407 None:intergenic 45.0%
!! TGGTGTCGTTGAAAGAGTGA+AGG - chr1.3:72799657-72799676 MS.gene93624:CDS 45.0%
!!! CGTCCTGTTTTGAGGAGTAT+GGG - chr1.3:72800306-72800325 MS.gene93624:intron 45.0%
AACCACCCGGATCTTCTTGA+AGG - chr1.3:72800168-72800187 MS.gene93624:CDS 50.0%
ACCACCCGGATCTTCTTGAA+GGG - chr1.3:72800169-72800188 MS.gene93624:CDS 50.0%
AGCATATCTCAAGGCGGTCA+AGG - chr1.3:72799449-72799468 MS.gene93624:intron 50.0%
GACCGCCTTGAGATATGCTA+AGG + chr1.3:72799448-72799467 None:intergenic 50.0%
GGAAAGTAAGCCTATCACCC+TGG - chr1.3:72800000-72800019 MS.gene93624:intron 50.0%
GGTCCGAGTCGATAAGAAGA+AGG - chr1.3:72800382-72800401 MS.gene93624:intron 50.0%
GTTGCTCATCCTCAGACGAA+AGG + chr1.3:72799753-72799772 None:intergenic 50.0%
TCTACCGTGCCAACAATCTC+AGG - chr1.3:72799240-72799259 MS.gene93624:CDS 50.0%
TGCACTCTTCCAAAACCACC+CGG - chr1.3:72800155-72800174 MS.gene93624:CDS 50.0%
! CAAGAAGATCCGGGTGGTTT+TGG + chr1.3:72800167-72800186 None:intergenic 50.0%
! TTTTGACCATCTCGCTTCGG+CGG + chr1.3:72799408-72799427 None:intergenic 50.0%
!!! CCGTCCTGTTTTGAGGAGTA+TGG - chr1.3:72800305-72800324 MS.gene93624:intron 50.0%
ACCCTTCAAGAAGATCCGGG+TGG + chr1.3:72800173-72800192 None:intergenic 55.0%
CTCAAAACAGGACGGCATCC+TGG + chr1.3:72800300-72800319 None:intergenic 55.0%
! CAGGATGCCGTCCTGTTTTG+AGG - chr1.3:72800298-72800317 MS.gene93624:intron 55.0%
! TTTGGAAGAGTGCAGCAGCC+TGG + chr1.3:72800149-72800168 None:intergenic 55.0%
!! TGGTGCTGTGTGGGGCTGTA+GGG - chr1.3:72800240-72800259 MS.gene93624:CDS 60.0%
!! TTGGTGCTGTGTGGGGCTGT+AGG - chr1.3:72800239-72800258 MS.gene93624:CDS 60.0%
! GGTGCTGTGTGGGGCTGTAG+GGG - chr1.3:72800241-72800260 MS.gene93624:CDS 65.0%
GGGCAACCGCCGAAGCGAGA+TGG - chr1.3:72799399-72799418 MS.gene93624:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72799225 72800436 72799225 ID=MS.gene93624
chr1.3 mRNA 72799225 72800436 72799225 ID=MS.gene93624.t1;Parent=MS.gene93624
chr1.3 exon 72800400 72800436 72800400 ID=MS.gene93624.t1.exon1;Parent=MS.gene93624.t1
chr1.3 CDS 72800400 72800436 72800400 ID=cds.MS.gene93624.t1;Parent=MS.gene93624.t1
chr1.3 exon 72800120 72800279 72800120 ID=MS.gene93624.t1.exon2;Parent=MS.gene93624.t1
chr1.3 CDS 72800120 72800279 72800120 ID=cds.MS.gene93624.t1;Parent=MS.gene93624.t1
chr1.3 exon 72799830 72800016 72799830 ID=MS.gene93624.t1.exon3;Parent=MS.gene93624.t1
chr1.3 CDS 72799830 72800016 72799830 ID=cds.MS.gene93624.t1;Parent=MS.gene93624.t1
chr1.3 exon 72799628 72799726 72799628 ID=MS.gene93624.t1.exon4;Parent=MS.gene93624.t1
chr1.3 CDS 72799628 72799726 72799628 ID=cds.MS.gene93624.t1;Parent=MS.gene93624.t1
chr1.3 exon 72799225 72799371 72799225 ID=MS.gene93624.t1.exon5;Parent=MS.gene93624.t1
chr1.3 CDS 72799225 72799371 72799225 ID=cds.MS.gene93624.t1;Parent=MS.gene93624.t1
Gene Sequence

>MS.gene93624

ATGAATTCTATAGACTCTACCGTGCCAACAATCTCAGGTTTGATTAAGATAAATACTTAGTGCTTAGAGCCAAAGGAGCAATAAAGAAATGAAAACATAATTCAGAAACCATATGATAAGATCAAGCTCAACATGATTGTGGTGTATATTCTCTAAGATCAAGTTTCAAGGTCTGGGCAACCGCCGAAGCGAGATGGTCAAAAACTGACTACTAATGATGCCTTAGCATATCTCAAGGCGGTCAAGGATATTTTTCAAGATAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTGCAAAGCACAAAGGTTTGATAATGTTGTACCACGTTGTTTTTGTATATATATTGGGAGAGGGGTTATGAATTTGTTAGTTGTAATTGATTTGTTTATCCTTTTGGTGCATTTGTAGAGTTGATACTGATGGTGTCGTTGAAAGAGTGAAGGAACTTTTTAGAAGTCATAGAGACTTGATCTTGGGATTTAACACCTTTTTGTCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTTATGAAGCTACGAGTTATGTGAACACGATAAAGGTTTAGAATGTTTGTGAGTTTAATGGATTCTCTTCATGCAGATTTGTTTGCAATGTAGAATTAATAGTTTTAGTTTTGAGCTTAATGGTTCCTTTTTATGCAGACTCGGTTTCAGGGCGATGTTCATGTTTACAAGTCATTTATGGACATATTGAATACGTACAGAAAGGAAAGTAAGCCTATCACCCTGGTCTACAAAGAGGTATGTGCTGTTATAGTCAGGAAAATCTGTAATGTTGGTTTTTTCTTTTTTTTATTTCCTCCAGTACTTGACATATTGTTGTGATACACATTTTAATCATGATTGCACTTCTCCAGGCTGCTGCACTCTTCCAAAACCACCCGGATCTTCTTGAAGGGTTTATTCATTTGTGTCGTGTTGATTGTCTATAATGTAGTGTTCAAATTTGGTGCTGTGTGGGGCTGTAGGGGTGTAATATAATGTTTGTGTTTAATAGGACAAGGCCAGGATGCCGTCCTGTTTTGAGGAGTATGGGTTGCATGTTGATTATTTTGTAATGTTACGTGATCCCAACAACAATATGTTTGAGGTCCGAGTCGATAAGAAGAAGGGCAAGGTTTACTTAAGGGACGGTTTGCTTTAG
Protein sequence

>MS.gene93624.t1

MNSIDSTVPTISDQVSRSGQPPKRDGQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDCKAQRVDTDGVVERVKELFRSHRDLILGFNTFLSKGHEITLSSEDEQPQPKKKVEFYEATSYVNTIKTRFQGDVHVYKSFMDILNTYRKESKPITLVYKEDKARMPSCFEEYGLHVDYFVMLRDPNNNMFEVRVDKKKGKVYLRDGLL