AlfalfaGEDB | MS.gene93771

M. sativa cultivar XinJiangDaYe / MS.gene93771

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004707 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93771.t1	XP_024628191.1	89.8	607	38	2	1	583	1	607	3.70E-285	990.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93771.t1	Q9LV37	80.2	510	95	4	75	582	4	509	3.9e-235	815.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93771.t1	A0A396GRX3	89.8	606	38	3	1	583	1	605	1.9e-283	984.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene93771.t1	MTR_8g106960	92.422	607	21	4	1	583	1	606	1072
MS.gene93771.t1	MTR_8g106960	92.453	583	20	3	1	559	1	583	1031
MS.gene93771.t1	MTR_6g079470	74.030	593	124	7	1	583	1	573	870
MS.gene93771.t1	MTR_2g021330	76.298	443	99	3	81	518	12	453	731
MS.gene93771.t1	MTR_4g117490	79.286	420	86	1	81	500	12	430	730
MS.gene93771.t1	MTR_4g117490	79.286	420	86	1	81	500	12	430	729
MS.gene93771.t1	MTR_2g021330	80.387	413	79	2	77	488	8	419	727
MS.gene93771.t1	MTR_3g089510	68.496	492	125	5	77	541	8	496	691
MS.gene93771.t1	MTR_3g089510	68.724	486	122	5	83	541	2	484	686
MS.gene93771.t1	MTR_2g072840	75.121	414	102	1	77	490	8	420	667

Showing 1 to 10 of 487 entries

Previous1 2 3 4 5…49Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene93771.t1	AT3G18040	80.350	514	89	5	75	583	113	619	829
MS.gene93771.t1	AT3G18040	80.350	514	89	5	75	583	4	510	828
MS.gene93771.t1	AT3G18040	80.906	508	85	5	81	583	5	505	827
MS.gene93771.t1	AT3G18040	76.852	540	90	6	75	583	113	648	822
MS.gene93771.t1	AT1G73670	69.412	595	148	11	1	582	1	574	821
MS.gene93771.t1	AT1G18150	67.438	605	156	8	1	582	1	587	781
MS.gene93771.t1	AT1G18150	67.438	605	156	8	1	582	1	587	781
MS.gene93771.t1	AT1G18150	67.438	605	156	8	1	582	1	587	781
MS.gene93771.t1	AT5G19010	78.606	416	89	0	77	492	8	423	717
MS.gene93771.t1	AT2G01450	69.087	482	142	3	81	555	3	484	702

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Find 105 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATAGATGGGTGGTGG+AGG	0.480082	4.2:+414660	None:intergenic
AAACCAGCTTCATGTATCCT+AGG	0.488425	4.2:+416890	MS.gene93771:CDS
AAACTAGAACTAAGCATGCA+TGG	0.575267	4.2:-419166	None:intergenic
AAACTCAAGATTTGTGATTT+TGG	0.197852	4.2:+415609	MS.gene93771:CDS
AAATCGTCCATCAGCCGAAG+AGG	0.593627	4.2:+416488	MS.gene93771:CDS
AAATTTCTGGGAGAATGGAA+CGG	0.581431	4.2:-416406	None:intergenic
AACCACATAGTTCAGGTGCA+CGG	0.635811	4.2:-415829	None:intergenic
AACGATATTGAAATGCCAAC+TGG	0.429611	4.2:+417994	MS.gene93771:CDS
AAGCTACGTGGACTGTAGTT+TGG	0.375438	4.2:-418093	None:intergenic
AATATATTCCTCAAGCATCT+GGG	0.518685	4.2:-416854	None:intergenic

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGAACCACATAGTTC+AGG	-	chr4.2:415839-415858	None:intergenic	30.0%
AAACACAAACCAGGAAAATA+TGG	-	chr4.2:415885-415904	None:intergenic	30.0%
AAATTTCTGTGGTCCAAATT+AGG	+	chr4.2:417733-417752	MS.gene93771:intron	30.0%
AACACAAACCAGGAAAATAT+GGG	-	chr4.2:415884-415903	None:intergenic	30.0%
AACAGAATCGTATGTTGAAA+TGG	+	chr4.2:418567-418586	MS.gene93771:intron	30.0%
AATATATTCCTCAAGCATCT+GGG	-	chr4.2:416857-416876	None:intergenic	30.0%
AATATTTAACGACCTGAAGA+TGG	+	chr4.2:418511-418530	MS.gene93771:intron	30.0%
AATGTTCGATGCAATACAAT+AGG	+	chr4.2:418793-418812	MS.gene93771:intron	30.0%
AGCCACTATAGAATATAGAT+AGG	-	chr4.2:417267-417286	None:intergenic	30.0%
ATAGGTTCTGTCATATAAGA+TGG	+	chr4.2:418842-418861	MS.gene93771:intron	30.0%

Showing 1 to 10 of 286 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	414669	419179	414669	ID=MS.gene93771
chr4.2	mRNA	414669	419179	414669	ID=MS.gene93771.t1;Parent=MS.gene93771
chr4.2	exon	414669	414899	414669	ID=MS.gene93771.t1.exon1;Parent=MS.gene93771.t1
chr4.2	CDS	414669	414899	414669	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	415033	415441	415033	ID=MS.gene93771.t1.exon2;Parent=MS.gene93771.t1
chr4.2	CDS	415033	415441	415033	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	415553	415680	415553	ID=MS.gene93771.t1.exon3;Parent=MS.gene93771.t1
chr4.2	CDS	415553	415680	415553	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	415806	415865	415806	ID=MS.gene93771.t1.exon4;Parent=MS.gene93771.t1
chr4.2	CDS	415806	415865	415806	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	415972	416121	415972	ID=MS.gene93771.t1.exon5;Parent=MS.gene93771.t1
chr4.2	CDS	415972	416121	415972	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	416354	416509	416354	ID=MS.gene93771.t1.exon6;Parent=MS.gene93771.t1
chr4.2	CDS	416354	416509	416354	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	416613	416750	416613	ID=MS.gene93771.t1.exon7;Parent=MS.gene93771.t1
chr4.2	CDS	416613	416750	416613	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	416838	416911	416838	ID=MS.gene93771.t1.exon8;Parent=MS.gene93771.t1
chr4.2	CDS	416838	416911	416838	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	417575	417679	417575	ID=MS.gene93771.t1.exon9;Parent=MS.gene93771.t1
chr4.2	CDS	417575	417679	417575	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	417954	418179	417954	ID=MS.gene93771.t1.exon10;Parent=MS.gene93771.t1
chr4.2	CDS	417954	418179	417954	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1
chr4.2	exon	419105	419179	419105	ID=MS.gene93771.t1.exon11;Parent=MS.gene93771.t1
chr4.2	CDS	419105	419179	419105	ID=cds.MS.gene93771.t1;Parent=MS.gene93771.t1

Gene Sequence

>MS.gene93771

ATGGGTGGTGGAGGAACGATCTCGGAAGGGATTCGACGCTTATTTCAACGACGCCCGACTACTTGTACTTCTAGTAAGCAGCAGCAGCAGCAGCAGCAGCACAGCAATGATAATAATAATAATATTGACTTGGTGAGAGATTTGCGTTCACAGTTGGCTGTTATTCCAACCACTAACGATCACGATCATCATCCTCAACAACAATCTTTCTTCAACTTGAATCATATCAAAGTCCCAACCAACACTGTCTTCTTCCCTTCTTCAATGGATCCCAACAAAAAGGTAAGCTACCTCACTTCCTTCCTTCCTTCCTTTTTCCCCTTTCTTTCTTTCTTTCGATCCATTTCTTTTTCTTTTAACTCAGGGTGTTCCAGAAACTGAGTTTTTCACCGAGTATGGTGAGGCAAGTCAATACCAAGTCCAAGAAATCATTGGAAAAGGAAGTTATGGTGTTGTCTGTTCTGCAATTGATACTCATACCGGTGAAAAAGTTGCTATCAAGAAAATTAATGATGTTTTTGAGCATGTATCTGATGCCACGCGGATCCTAAGAGAAATCAAGCTCTTACGCTTGCTCCGACATCCTGATATTGTTGAAATTAGACATATTATGCTTCCTCCTTCACGCCGAGAGTTTAGGGATATCTATGTTGTCTTTGAGCTCATGGAATCTGATCTACATCAAGTCATTAAGGCAAATGATGATCTTACTCCTCAGCACCACCAATTTTTCTTGTATCAACTTCTTCGAGGCCTTAAATTTATACATACTGGTATATATATATATATATATATATCCATCTTATTTAATAACCACCTCCCTAACCTCTTTTCATATACCACTCACTATTCAATAATTCAACTCATATATTTTTTCATTGCAGCCAATGTGTTTCACCGTGATTTGAAACCAAAAAATATTCTTGCTAATGCTGATTGCAAACTCAAGATTTGTGATTTTGGACTTGCTCGAGTTTCATTTAATGACGCTCCATCCACTATTTTCTGGACTGTAAGTACTCTAATATGCAACTATGTTTTACCCTTTAAGTTTTTCAGTTGGATTGGAACCTACAAATTGCAATCTACCTACCTCTCTAAACTGCATGCTGACTTAATTTACCTACTTTTACCAAGGACTATGTTGCAACTAGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAAGTAAGTAATTTTTTCCCCATATTTTCCTGGTTTGTGTTTGTGTGATACAAGAACTTGATGTATTGAAATATGTATGTATGTAATTTATATTCCCTTTCTTATGCAGTATACCCCTGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTACTGGGAGACCATTGTTTCCTGGGAAAAATGTGGTGCATCAATTGGATATCATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCAAGGGTTAGTTTATTAAAATTTACTCAGCAATTTTCTGAAATCAACAGTCATGCTTGTTTGTCATGGTGTAGTGAGATTAATGCTGAATTTCTAGTGTTTCTAACAAATTCTTCCTATATTATGTTTTCAAGGAACAAATTACGGTTTATTTAAATAAATGCCATTGAAGCTTCATTTTACTACCTCTCCTCTGTCTGTCCTCTTATATATATATAAATTCTTAATTTTGTTACAGATTCGAAATGAGAAAGCTAGAAGGTATCTTAACAGCATGCGAAAAAAGCAACCCGTTCCATTCTCCCAGAAATTTCCAAATATAGATCCTTTGGCTCTTCGTATACTGGAGCGCTTACTTGCATTTGATCCTAAAAATCGTCCATCAGCCGAAGAGGTTGGTCTCCATAACCCGTATATGATTACCTACCAACGGAGAAAGTTCATTGATAAATTACAAAGAAGAAATTTAATTTGTTTTGTTATGCTTGTGATATCAGGCATTGTCTGATCCTTATTTCCATGGTTTGTCGAACATTGATCGTGAACCATCCACTCACCCCATTTCAAAACTTGAGTTTGAATTCGAGAGAAGGAAAGTGACTAAAGATGATGTCAGAGAGTTGATTTATCGAGAGGTACAGCCATGCATTTCACTCACTCCTGCTTCAAATTATTTCTTCTCCTTTACATTGTAATAGTTAATTATACGTTTATATAAACAGATTTTGGAGTATCATCCCCAGATGCTTGAGGAATATATTCGTGGTGGAGATCAAACCAGCTTCATGTATCCTAGGTAAATGTGCTAGTATGCTTGGTAGTTTGTTGAATGCTTGATACTCACATATATTAATGAAGATGTGCGTCCAATATCTGTCTGATACGTCACAGGGCATAGCCTTTCATTTCTGAAATAAGATAAAAGATATTAAGCCAACTTATACTGTACGGTTTTCACAATATCTGTTTTTTATAAATTGTCAGGAGCTCTTGTATGAGTTTAATGTTGTTGCATTGAGATTATGTTTATTGTATTAATTTATTTGCAAATTTCTACACAATTATAAATGCTTAAATAAGTCTTTAGTCCCTATAACATCACAACCTTCTGTCTTTAGTCTTCACATGAATTTTATTCAATTTCAGTTCCTATCTATATTCTATAGTGGCTATTTTTTTAGCCCCCATAGGGACCGATGGCACCCATTTGTTGTAAAATTTTAAATTAAATAAAATGTATGTAGGAACTAAATTTGAAAGTTTGTGATTTTAAAAGGACTAAAACTTTTTTTGATGCTCATCCTTGTAATAGGTAAAACTTTGACCCATCAAATTATTGATGGTTAATTTTCTGCGTTTTGCATGTCTTCTAAGAAATGTAATATGGAAAGTGGGCTCTTTTGAATTTCAAAATTTACATGTTTTGGTTATTGGTTAGTAATTCTATGTTGTTGTATAGTGGGGTTGATCGATTCAAGCGACAGTTTGCACATCTTGAGGAACATTATGGCAAAAAAGGCGAACGAATCTCACCACTGCAGAGACAGCATGCATCCTTACCTCGGTAAGTATTTGTCAATATTTTATTCTCTGAGCAGTTTCTAGCCTTAGCACTAGAAATTTCTGTGGTCCAAATTAGGCGTTTAAATACTGCATTGGCTCACCTGCATTTTGAAGAACAAGCTTCTTGTCTTCTTTTGGGGATTTATGTGTTTAATATGTGTTATTATTATTACTCCCACCGGTTCCAGATAAGATTGGCAACATGCCTGCGAAACATTTTCTCTGGTATTGTGTGAAGTCATATGCGTTGAATACTGCAATTTCACTTTTTGCAGAGAGCGAGTTCATACTTCCAAGAATGAAAACAATGAAAACAACGATATTGAAATGCCAACTGGATCAAATCTTCAGAGCCCTCCAGGTTCTAATGTGACAGATGCTGAAAACTCAGACGCTCAAAATGGACTCGCAAAGCCAAACTACAGTCCACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGACGTGAAAGGAAGTAAAAATCCAGAGGTAGTTAACTCTATCTTATCAAGGGGGGAGATCTTAGTTGAGGTGGTGAAATAATAATAATATCCAAAAATTGGTTGCAATTTTGTGTCGAGTATCTGGATATAATACAATATAGCGATGATTATTATTTCATATAACATAATATATACAATTGCAGTTCTATAAATTTAAAATAAGAACCTACTTTTTAGACATTGCTCTATGAAACCAATACTTTCGGTTGGATGCTGCGTGTTTGAACTTTAGAATAAAAATCTAACTAAACTGAAGATATTTACTATTATGCCATAATTGCAAAAGAAGAAAAATATGCAGCAATTTTTTTAAAGCTAATATTTAACGACCTGAAGATGGAAAAGTCATGCATATAAATAGTCTTAGGCAGAGAACAGAATCGTATGTTGAAATGGACTTTGGATAAAAAATATTTTTTTGTTGATATCGGCCTTGAGCCAGAGAAGTTGAAGAACCACTCAAATGTAAGGGTCCAAGTGATCTTAAATTGCATATCTAAGTTACCTAGCCATTCCAGAATTAAATACTTTTTTAAAAAGTTGACTTGTGTACTTCAGAAATAAGTATCGGTGAAGTATCCAAAAGCATCGGTATAAAAAATGTTCGATGCAATACAATAGGTGAAGACAATGTAATATCAGTGCTTCATAGGTTCTGTCATATAAGATGGTTTTCATTTTATTGAGATTTTCTACAATAGTCTTACAATATAAGCTATCAAGAATTTGTGTACATTATTATTTTGAATAGGAAAGATACAGTTTATTATTGTTTTGTTAAGTCTGATTTTAATTGTGAAACTCTGTAAAATCGACATTTATCTTCAAATCGTCTCCGGTACATTCAAATATTTAACTAAATGAAATGCATTTCTGTCTAGTTTGTTTTGACGGTATTCGTTTTGTATTAGCAGGAGCCTATTATAGAGGTCAATGACGACGCAGCAGATGAATTGACAGATAACATTGCTGCCATGCATGCTTAG

Protein sequence

>MS.gene93771.t1

MGGGGTISEGIRRLFQRRPTTCTSSKQQQQQQQHSNDNNNNIDLVRDLRSQLAVIPTTNDHDHHPQQQSFFNLNHIKGVPETEFFTEYGEASQYQVQEIIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIRHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPQHHQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSTIFWTDYVATRWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDIMTDLLGTPPPESIARIRNEKARRYLNSMRKKQPVPFSQKFPNIDPLALRILERLLAFDPKNRPSAEEALSDPYFHGLSNIDREPSTHPISKLEFEFERRKVTKDDVRELIYREILEYHPQMLEEYIRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKKGERISPLQRQHASLPRERVHTSKNENNENNDIEMPTGSNLQSPPGSNVTDAENSDAQNGLAKPNYSPRSLLKSASISASKCIDVKGSKNPEQEPIIEVNDDAADELTDNIAAMHA