Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93774.t1 | XP_003619723.2 | 90.1 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 7.30E-158 | 566.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93774.t1 | Q6IP65 | 56.9 | 260 | 112 | 0 | 43 | 302 | 28 | 287 | 2.7e-76 | 287.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93774.t1 | G7KNV7 | 90.1 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 5.3e-158 | 566.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene93774.t1 | TR | Rcd1-like |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93774.t1 | MTR_6g065170 | 90.093 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 0.0 | 599 |
MS.gene93774.t1 | MTR_8g106940 | 90.093 | 323 | 32 | 0 | 1 | 323 | 1 | 323 | 0.0 | 598 |
MS.gene93774.t1 | MTR_3g018640 | 60.133 | 301 | 120 | 0 | 1 | 301 | 1 | 301 | 1.66e-122 | 353 |
MS.gene93774.t1 | MTR_3g053170 | 63.441 | 279 | 102 | 0 | 38 | 316 | 26 | 304 | 3.93e-119 | 345 |
MS.gene93774.t1 | MTR_5g093460 | 58.252 | 309 | 128 | 1 | 1 | 309 | 130 | 437 | 1.38e-116 | 343 |
MS.gene93774.t1 | MTR_5g093460 | 72.519 | 131 | 35 | 1 | 34 | 164 | 1 | 130 | 3.58e-54 | 183 |
MS.gene93774.t1 | MTR_1g056470 | 57.977 | 257 | 104 | 1 | 1 | 257 | 1 | 253 | 1.70e-101 | 299 |
MS.gene93774.t1 | MTR_1g043540 | 59.167 | 120 | 48 | 1 | 139 | 258 | 6 | 124 | 4.68e-41 | 140 |
MS.gene93774.t1 | MTR_1g043500 | 50.820 | 61 | 29 | 1 | 199 | 258 | 6 | 66 | 3.45e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93774.t1 | AT3G20800 | 59.355 | 310 | 118 | 2 | 6 | 310 | 5 | 311 | 1.90e-120 | 349 |
MS.gene93774.t1 | AT5G12980 | 56.929 | 267 | 115 | 0 | 32 | 298 | 29 | 295 | 3.20e-103 | 305 |
MS.gene93774.t1 | AT2G32550 | 32.900 | 231 | 143 | 6 | 67 | 287 | 42 | 270 | 9.79e-28 | 109 |
MS.gene93774.t1 | AT2G32550 | 32.900 | 231 | 143 | 6 | 67 | 287 | 81 | 309 | 1.39e-27 | 110 |
MS.gene93774.t1 | AT2G32550 | 32.500 | 200 | 128 | 4 | 104 | 298 | 29 | 226 | 9.33e-25 | 100 |
Find 55 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCACAGTTTGAGTATTTA+AGG | 0.083275 | 4.2:-437933 | MS.gene93774:CDS |
CAGAACTTGCATCTTTATTA+TGG | 0.166706 | 4.2:-439012 | MS.gene93774:CDS |
TCTTTATTATGGAATTCTTT+TGG | 0.317731 | 4.2:-439001 | MS.gene93774:CDS |
CATAATAAAGATGCAAGTTC+TGG | 0.318259 | 4.2:+439013 | None:intergenic |
AAGGTAACCCATGACTTCTT+TGG | 0.326447 | 4.2:+437222 | None:intergenic |
GAATTATCTCGCTTAAAATA+AGG | 0.331775 | 4.2:+437203 | None:intergenic |
AGGAGAAAACAATGATATTA+TGG | 0.339445 | 4.2:-435804 | MS.gene93774:CDS |
TTTACCCACTTCCATGTTGT+TGG | 0.346974 | 4.2:+435878 | None:intergenic |
GTTCCATGCAAGCCATCGTT+TGG | 0.360758 | 4.2:+440656 | None:intergenic |
CAACGTTCTTGCACTACTTC+AGG | 0.372329 | 4.2:-438511 | MS.gene93774:intron |
TTACCCACTTCCATGTTGTT+GGG | 0.381391 | 4.2:+435879 | None:intergenic |
CACCTGCTACTAAAGGTTCC+TGG | 0.391093 | 4.2:+435828 | None:intergenic |
TGTTTAAGCAACATGGAGAT+TGG | 0.396201 | 4.2:-437175 | MS.gene93774:CDS |
TTTGCAAGTCTTGGAGTCAT+TGG | 0.412772 | 4.2:-437910 | MS.gene93774:CDS |
TTCCATGCAAGCCATCGTTT+GGG | 0.414939 | 4.2:+440657 | None:intergenic |
TGCCCAAACGATGGCTTGCA+TGG | 0.424700 | 4.2:-440659 | MS.gene93774:CDS |
TATTTAAGGTTTGCAAGTCT+TGG | 0.428903 | 4.2:-437919 | MS.gene93774:CDS |
TTTATTGGATGATGGTGGTT+TGG | 0.429087 | 4.2:-436929 | MS.gene93774:CDS |
GAAGTGGGTAAAGCACTTGC+AGG | 0.446999 | 4.2:-435867 | MS.gene93774:CDS |
TTCTTCATTGTGAGCGAATG+AGG | 0.447112 | 4.2:+440733 | None:intergenic |
TCTCCTCCACCTGCTACTAA+AGG | 0.452997 | 4.2:+435821 | None:intergenic |
CTCGTTTGTCTGATGATCGC+TGG | 0.465281 | 4.2:-436786 | MS.gene93774:intron |
GCAAGCCATCGTTTGGGCAG+TGG | 0.471268 | 4.2:+440663 | None:intergenic |
TTCATGTAATACCTTCACTA+AGG | 0.484633 | 4.2:+437885 | None:intergenic |
TCTTCGTCTGTAGCTCCTCT+TGG | 0.485469 | 4.2:-440706 | MS.gene93774:CDS |
ATTATGGAGTCGTCAACATC+AGG | 0.492978 | 4.2:-435788 | MS.gene93774:CDS |
ACAAGGATGTTGTTCTTGAA+TGG | 0.500026 | 4.2:-438260 | MS.gene93774:intron |
TCCATTGTGTTTAAGCAACA+TGG | 0.505517 | 4.2:-437182 | MS.gene93774:CDS |
AACCAGGAACCTTTAGTAGC+AGG | 0.521492 | 4.2:-435830 | MS.gene93774:CDS |
CGCTCTTCGTGTGCTCTCCA+AGG | 0.522456 | 4.2:-440593 | MS.gene93774:intron |
GTGCTAGAGTAAGAGTCGGT+GGG | 0.552042 | 4.2:+438550 | None:intergenic |
GGTTAACACCAAAGAAGTCA+TGG | 0.557731 | 4.2:-437230 | MS.gene93774:CDS |
AGAGTTTGCTAATGTAATGC+CGG | 0.558847 | 4.2:+436644 | None:intergenic |
AAGACCCAACAACATGGAAG+TGG | 0.564589 | 4.2:-435883 | MS.gene93774:CDS |
AACCTTAAATACTCAAACTG+TGG | 0.565441 | 4.2:+437931 | None:intergenic |
GGAGAATGTGAGAAAGAACC+AGG | 0.585783 | 4.2:-435846 | MS.gene93774:CDS |
AGTCATTGGCGCCTTAGTGA+AGG | 0.595063 | 4.2:-437896 | MS.gene93774:intron |
GAACCTTTAGTAGCAGGTGG+AGG | 0.599018 | 4.2:-435824 | MS.gene93774:CDS |
TGTGCTAGAGTAAGAGTCGG+TGG | 0.604538 | 4.2:+438549 | None:intergenic |
TCCATGTTGCTTAAACACAA+TGG | 0.617408 | 4.2:+437181 | None:intergenic |
CAGGAACCTTTAGTAGCAGG+TGG | 0.622718 | 4.2:-435827 | MS.gene93774:CDS |
TGCTAGAGTAAGAGTCGGTG+GGG | 0.624824 | 4.2:+438551 | None:intergenic |
ATGGTGTCTCTAAACACACT+AGG | 0.625901 | 4.2:+436618 | None:intergenic |
GTTAACACCAAAGAAGTCAT+GGG | 0.626974 | 4.2:-437229 | MS.gene93774:CDS |
TTCAGGAAGACCCAACAACA+TGG | 0.633339 | 4.2:-435889 | MS.gene93774:intron |
TGGCATCTCACTCTGAAACA+AGG | 0.635503 | 4.2:-438277 | MS.gene93774:CDS |
TCAGACAAACGAGCATAGCA+AGG | 0.637885 | 4.2:+436796 | None:intergenic |
AACTTTATAAGACGAGGTGT+AGG | 0.638935 | 4.2:+436826 | None:intergenic |
AAGAACCACTGCCCAAACGA+TGG | 0.643808 | 4.2:-440668 | MS.gene93774:CDS |
AGGAAGGGATACAAATACAA+AGG | 0.647299 | 4.2:+437973 | None:intergenic |
AGACCCAACAACATGGAAGT+GGG | 0.650091 | 4.2:-435882 | MS.gene93774:CDS |
ATTATAAACTTTATAAGACG+AGG | 0.663846 | 4.2:+436820 | None:intergenic |
GATTGTGCTAGAGTAAGAGT+CGG | 0.683303 | 4.2:+438546 | None:intergenic |
GATTGCTGAGTTCAATAACA+AGG | 0.688379 | 4.2:+440632 | None:intergenic |
GATTGAGTAGAAGCACCAAG+AGG | 0.698261 | 4.2:+440691 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTTAAAATAATATAATT+TGG | + | chr4.2:438852-438871 | None:intergenic | 0.0% |
!!! | ATTTTAAAATAATATAATTT+GGG | + | chr4.2:438851-438870 | None:intergenic | 0.0% |
!! | AAAAAAAAATAAAGTATAAG+TGG | + | chr4.2:436511-436530 | None:intergenic | 10.0% |
!! | AAAACATATAAACATAATTT+GGG | + | chr4.2:437673-437692 | None:intergenic | 10.0% |
!! | ATATAGTTAATAATAACATT+GGG | + | chr4.2:440214-440233 | None:intergenic | 10.0% |
!! | ATCTTTAGATTAAAATTAAA+TGG | - | chr4.2:440315-440334 | MS.gene93774:intron | 10.0% |
!! | TAAATACAAAATATAATCAT+GGG | - | chr4.2:438414-438433 | MS.gene93774:intron | 10.0% |
!! | TATATAGTTAATAATAACAT+TGG | + | chr4.2:440215-440234 | None:intergenic | 10.0% |
!! | TGAATGAAATTATATATTAT+TGG | - | chr4.2:437585-437604 | MS.gene93774:intron | 10.0% |
!! | TTAAATACAAAATATAATCA+TGG | - | chr4.2:438413-438432 | MS.gene93774:intron | 10.0% |
!!! | AAAAAATTTTAAAGATACAT+CGG | + | chr4.2:436357-436376 | None:intergenic | 10.0% |
!!! | ATTTTATATTATAATTTGGT+TGG | - | chr4.2:437409-437428 | MS.gene93774:intron | 10.0% |
!!! | CTTTATTTTTTTTTAAAACT+CGG | - | chr4.2:436517-436536 | MS.gene93774:intron | 10.0% |
!!! | TATAATGCATAAAATTTTAT+TGG | - | chr4.2:439585-439604 | MS.gene93774:intron | 10.0% |
!!! | TCTTTTTATAAAAATATCTA+AGG | + | chr4.2:436831-436850 | None:intergenic | 10.0% |
!!! | TGACATTTTATATTATAATT+TGG | - | chr4.2:437405-437424 | MS.gene93774:intron | 10.0% |
!!! | TTTTAAATTTGAGTATATTA+TGG | - | chr4.2:438369-438388 | MS.gene93774:intron | 10.0% |
!!! | TTTTGATATATAAAACAATA+TGG | + | chr4.2:440141-440160 | None:intergenic | 10.0% |
! | CGGGGGGGGGGGGGGGGGGG+GGG | - | chr4.2:436583-436602 | MS.gene93774:intron | 100.0% |
! | GCGGGGGGGGGGGGGGGGGG+GGG | - | chr4.2:436582-436601 | MS.gene93774:intron | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr4.2:436584-436603 | MS.gene93774:intron | 100.0% |
!! | AAATACAAAATATAATCATG+GGG | - | chr4.2:438415-438434 | MS.gene93774:intron | 15.0% |
!! | AAATTTGTACCAATAAATTA+TGG | - | chr4.2:438750-438769 | MS.gene93774:intron | 15.0% |
!! | AATTTGTACCAATAAATTAT+GGG | - | chr4.2:438751-438770 | MS.gene93774:intron | 15.0% |
!! | ATACTTTACTTAATTATACT+TGG | - | chr4.2:436772-436791 | MS.gene93774:intron | 15.0% |
!! | GAAAACATATAAACATAATT+TGG | + | chr4.2:437674-437693 | None:intergenic | 15.0% |
!! | TAATTTGGGAAAAAATTATA+TGG | + | chr4.2:437659-437678 | None:intergenic | 15.0% |
!! | TTATGAATCAAATTTGTATA+TGG | + | chr4.2:439978-439997 | None:intergenic | 15.0% |
!! | TTTATACTAAATTAATGCTA+AGG | - | chr4.2:440493-440512 | MS.gene93774:intron | 15.0% |
!!! | AATTAACATGATTGATTTTT+AGG | + | chr4.2:438119-438138 | None:intergenic | 15.0% |
!!! | AGAAAAAAAATCTAAAATCA+TGG | + | chr4.2:439220-439239 | None:intergenic | 15.0% |
!!! | ATCTTAATTTTATCAGAAAT+TGG | + | chr4.2:436246-436265 | None:intergenic | 15.0% |
!!! | ATTGATTTTTAGGTATATTT+GGG | + | chr4.2:438109-438128 | None:intergenic | 15.0% |
!!! | CATTATTTGATATTATTTTC+AGG | - | chr4.2:440623-440642 | MS.gene93774:CDS | 15.0% |
!!! | GTGTTTTAAAAATGATTTAT+TGG | - | chr4.2:437886-437905 | MS.gene93774:intron | 15.0% |
!!! | TAATATGAAAGAAGTTTTAT+TGG | + | chr4.2:439857-439876 | None:intergenic | 15.0% |
!!! | TTATTACAATATAACTTGTT+AGG | - | chr4.2:439140-439159 | MS.gene93774:intron | 15.0% |
!!! | TTATTTTTTAAAGAGCATTT+TGG | - | chr4.2:439410-439429 | MS.gene93774:intron | 15.0% |
!!! | TTTTACAATTTAAAAAAACG+AGG | - | chr4.2:437728-437747 | MS.gene93774:intron | 15.0% |
!! | AAAAATAAAGTATAAGTGGA+TGG | + | chr4.2:436507-436526 | None:intergenic | 20.0% |
!! | AAACAAGTAATTAACATATC+AGG | + | chr4.2:437273-437292 | None:intergenic | 20.0% |
!! | AAATAATATAATTTGGGCTT+TGG | + | chr4.2:438845-438864 | None:intergenic | 20.0% |
!! | AAGTTATATTGTAATAAGAC+TGG | + | chr4.2:439137-439156 | None:intergenic | 20.0% |
!! | AATACAAAATATAATCATGG+GGG | - | chr4.2:438416-438435 | MS.gene93774:intron | 20.0% |
!! | ACGAAATTGATTAAGAAAAA+TGG | + | chr4.2:439933-439952 | None:intergenic | 20.0% |
!! | ATAATGCATCTTATAACTTT+AGG | - | chr4.2:440518-440537 | MS.gene93774:intron | 20.0% |
!! | ATACAATGTTAATACTTGTA+TGG | - | chr4.2:440451-440470 | MS.gene93774:intron | 20.0% |
!! | ATAGAAAAGTTTATCATTTG+TGG | + | chr4.2:438156-438175 | None:intergenic | 20.0% |
!! | ATTATAAACTTTATAAGACG+AGG | + | chr4.2:439712-439731 | None:intergenic | 20.0% |
!! | CAAAAGGAAATTATTACAAA+TGG | + | chr4.2:439260-439279 | None:intergenic | 20.0% |
!! | GAAAATGTAAGTGTAAATAA+TGG | + | chr4.2:438518-438537 | None:intergenic | 20.0% |
!! | TAAATTTGAGTATATTATGG+AGG | - | chr4.2:438372-438391 | MS.gene93774:intron | 20.0% |
!! | TAATGTGACTTCAAAAAATT+AGG | - | chr4.2:437245-437264 | MS.gene93774:intron | 20.0% |
!!! | ATTATATATTATTGGCTAGT+TGG | - | chr4.2:437593-437612 | MS.gene93774:intron | 20.0% |
!!! | CATAAAATTTTATTGGATGA+TGG | - | chr4.2:439592-439611 | MS.gene93774:intron | 20.0% |
!!! | GATTGATTTTTAGGTATATT+TGG | + | chr4.2:438110-438129 | None:intergenic | 20.0% |
!!! | GTTTTAACTTTTAAGCATTT+AGG | - | chr4.2:437864-437883 | MS.gene93774:intron | 20.0% |
!!! | TAAAAGTGATTAGTGTTTTT+TGG | + | chr4.2:439013-439032 | None:intergenic | 20.0% |
!!! | TAATATCTTGTTATGTGTTA+TGG | - | chr4.2:436923-436942 | MS.gene93774:CDS | 20.0% |
!!! | TAATGTTTTTTTTCTTCTTC+AGG | - | chr4.2:437928-437947 | MS.gene93774:CDS | 20.0% |
!!! | TCTTTATTATGGAATTCTTT+TGG | - | chr4.2:437528-437547 | MS.gene93774:intron | 20.0% |
!!! | TCTTTTAATGAGAAAAATCT+AGG | + | chr4.2:438462-438481 | None:intergenic | 20.0% |
!!! | TTCTATCTTTTATATTTCAG+AGG | - | chr4.2:437481-437500 | MS.gene93774:intron | 20.0% |
!!! | TTGATTTTTAGGTATATTTG+GGG | + | chr4.2:438108-438127 | None:intergenic | 20.0% |
! | AACTTCTTTCATATTAAAGC+AGG | - | chr4.2:439861-439880 | MS.gene93774:intron | 25.0% |
! | AATCACATACTCAACAAAAA+TGG | + | chr4.2:439484-439503 | None:intergenic | 25.0% |
! | ACTTCTTTCATATTAAAGCA+GGG | - | chr4.2:439862-439881 | MS.gene93774:intron | 25.0% |
! | AGAGAAACAATAGTGATAAA+AGG | - | chr4.2:437131-437150 | MS.gene93774:intron | 25.0% |
! | AGGAGAAAACAATGATATTA+TGG | - | chr4.2:440725-440744 | MS.gene93774:CDS | 25.0% |
! | ATTGGGAGACTTATAAAATT+AGG | + | chr4.2:440197-440216 | None:intergenic | 25.0% |
! | CAACATTTCCCATAATTTAT+TGG | + | chr4.2:438762-438781 | None:intergenic | 25.0% |
! | GAATTATCTCGCTTAAAATA+AGG | + | chr4.2:439329-439348 | None:intergenic | 25.0% |
! | TAAGATTATTATCTGACACA+TGG | - | chr4.2:436260-436279 | MS.gene93774:intron | 25.0% |
! | TTATGTAAATGACACATTCA+AGG | + | chr4.2:438731-438750 | None:intergenic | 25.0% |
! | TTGAATCTTGTGTTTAGTAT+AGG | - | chr4.2:438066-438085 | MS.gene93774:intron | 25.0% |
! | TTTAAGAGTTAGATTACCTA+TGG | + | chr4.2:436411-436430 | None:intergenic | 25.0% |
!! | AATTTCCTTTTGTTGATACT+TGG | - | chr4.2:439268-439287 | MS.gene93774:intron | 25.0% |
!! | ATAACTTGTGTGATATAGAT+AGG | - | chr4.2:439994-440013 | MS.gene93774:intron | 25.0% |
!! | TATTATTGCAGTACTTTTAC+AGG | - | chr4.2:437551-437570 | MS.gene93774:intron | 25.0% |
!! | TTTGTATATGGTAATGTGAA+AGG | + | chr4.2:439966-439985 | None:intergenic | 25.0% |
!!! | AAAATTTTATTGGATGATGG+TGG | - | chr4.2:439595-439614 | MS.gene93774:intron | 25.0% |
!!! | AACTTTAGGATAATAACTAG+AGG | - | chr4.2:440532-440551 | MS.gene93774:intron | 25.0% |
!!! | TGATTTTTAGGTATATTTGG+GGG | + | chr4.2:438107-438126 | None:intergenic | 25.0% |
!!! | TTGTCTTTTGTTTTAAGGAA+GGG | + | chr4.2:438574-438593 | None:intergenic | 25.0% |
AAAGTATAAGAACACCCATT+TGG | + | chr4.2:436759-436778 | None:intergenic | 30.0% | |
AACCTTAAATACTCAAACTG+TGG | + | chr4.2:438601-438620 | None:intergenic | 30.0% | |
AAGTATAAGAACACCCATTT+GGG | + | chr4.2:436758-436777 | None:intergenic | 30.0% | |
ACGTGTATCAATTCAAGTAT+AGG | + | chr4.2:436474-436493 | None:intergenic | 30.0% | |
AGAGAATAGACTGACAAAAT+TGG | - | chr4.2:437166-437185 | MS.gene93774:CDS | 30.0% | |
ATAAGTTGCACACATTGTTA+AGG | + | chr4.2:439807-439826 | None:intergenic | 30.0% | |
ATGAGTAACTTATGTGAGAA+TGG | - | chr4.2:440277-440296 | MS.gene93774:intron | 30.0% | |
CAGAACTTGCATCTTTATTA+TGG | - | chr4.2:437517-437536 | MS.gene93774:intron | 30.0% | |
CATAATAAAGATGCAAGTTC+TGG | + | chr4.2:437519-437538 | None:intergenic | 30.0% | |
CGTGTATCAATTCAAGTATA+GGG | + | chr4.2:436473-436492 | None:intergenic | 30.0% | |
GAAAGAGAGATTACATGAAA+TGG | - | chr4.2:437060-437079 | MS.gene93774:intron | 30.0% | |
GAATACCAAGTATCAACAAA+AGG | + | chr4.2:439276-439295 | None:intergenic | 30.0% | |
TAAGTTGCACACATTGTTAA+GGG | + | chr4.2:439806-439825 | None:intergenic | 30.0% | |
TAATCGAAGATAGATTCGTA+AGG | + | chr4.2:435963-435982 | None:intergenic | 30.0% | |
TATATAGCATATGATTGACC+TGG | + | chr4.2:440411-440430 | None:intergenic | 30.0% | |
TGACAAACATACGTTAAAAC+TGG | + | chr4.2:436885-436904 | None:intergenic | 30.0% | |
TGTTAGCCATTCTAAATAGT+GGG | - | chr4.2:436104-436123 | MS.gene93774:intron | 30.0% | |
TTACCTATGGATTTAGTGAA+AGG | + | chr4.2:436398-436417 | None:intergenic | 30.0% | |
TTCATGTAATACCTTCACTA+AGG | + | chr4.2:438647-438666 | None:intergenic | 30.0% | |
TTCTATCCCACTATTTAGAA+TGG | + | chr4.2:436113-436132 | None:intergenic | 30.0% | |
TTGTTAGCCATTCTAAATAG+TGG | - | chr4.2:436103-436122 | MS.gene93774:intron | 30.0% | |
! | AATTAGGCGAAAACACTTTT+TGG | + | chr4.2:440181-440200 | None:intergenic | 30.0% |
! | TATGTTTTCACTATAGTGTG+TGG | - | chr4.2:438232-438251 | MS.gene93774:intron | 30.0% |
! | TATTTAAGGTTTGCAAGTCT+TGG | - | chr4.2:438610-438629 | MS.gene93774:intron | 30.0% |
! | TCAGCAACAACAATATCTTT+TGG | - | chr4.2:440048-440067 | MS.gene93774:intron | 30.0% |
!! | ACATAAGAGAAAAGTGTTAG+AGG | + | chr4.2:438217-438236 | None:intergenic | 30.0% |
!! | GAGTTTGATACTTAAGTTGA+TGG | - | chr4.2:437099-437118 | MS.gene93774:intron | 30.0% |
!! | TGAGAATCGACTATTTCTAA+AGG | + | chr4.2:440587-440606 | None:intergenic | 30.0% |
!! | TGTGTTATTCTTAGTTTTCG+TGG | + | chr4.2:438803-438822 | None:intergenic | 30.0% |
!!! | CTTGTCTTTTGTTTTAAGGA+AGG | + | chr4.2:438575-438594 | None:intergenic | 30.0% |
!!! | GTGACTTGTCTTTTGTTTTA+AGG | + | chr4.2:438579-438598 | None:intergenic | 30.0% |
!!! | TTGTAGTTTTATCATGCTCT+TGG | - | chr4.2:439077-439096 | MS.gene93774:intron | 30.0% |
AAAAACGAGGCATGATTATG+AGG | - | chr4.2:437741-437760 | MS.gene93774:intron | 35.0% | |
AAAACGAGGCATGATTATGA+GGG | - | chr4.2:437742-437761 | MS.gene93774:intron | 35.0% | |
AACCAATCTAAGTTGTTGGA+TGG | - | chr4.2:437208-437227 | MS.gene93774:CDS | 35.0% | |
AACTTTATAAGACGAGGTGT+AGG | + | chr4.2:439706-439725 | None:intergenic | 35.0% | |
AATCTCACTCAATTCTTTCC+AGG | - | chr4.2:440376-440395 | MS.gene93774:intron | 35.0% | |
ACAAGGATGTTGTTCTTGAA+TGG | - | chr4.2:438269-438288 | MS.gene93774:CDS | 35.0% | |
ACTTTCAAGAGGACACAAAT+AGG | + | chr4.2:436329-436348 | None:intergenic | 35.0% | |
AGGAAGGGATACAAATACAA+AGG | + | chr4.2:438559-438578 | None:intergenic | 35.0% | |
AGTATAAGAACACCCATTTG+GGG | + | chr4.2:436757-436776 | None:intergenic | 35.0% | |
AGTCAACCAATCTAAGTTGT+TGG | - | chr4.2:437204-437223 | MS.gene93774:CDS | 35.0% | |
ATGCCTTTCACTAAATCCAT+AGG | - | chr4.2:436392-436411 | MS.gene93774:intron | 35.0% | |
CACCACAGTTTGAGTATTTA+AGG | - | chr4.2:438596-438615 | MS.gene93774:intron | 35.0% | |
CTACAAGTCAACCAATTATC+TGG | + | chr4.2:439063-439082 | None:intergenic | 35.0% | |
CTAGTTAAGAGCCAGATAAT+TGG | - | chr4.2:439049-439068 | MS.gene93774:intron | 35.0% | |
CTTTCAAGAGGACACAAATA+GGG | + | chr4.2:436328-436347 | None:intergenic | 35.0% | |
GATTGCTGAGTTCAATAACA+AGG | + | chr4.2:435900-435919 | None:intergenic | 35.0% | |
GTTAACACCAAAGAAGTCAT+GGG | - | chr4.2:439300-439319 | MS.gene93774:intron | 35.0% | |
TATGATTGACCTGGAAAGAA+AGG | + | chr4.2:440402-440421 | None:intergenic | 35.0% | |
TCCATTGTGTTTAAGCAACA+TGG | - | chr4.2:439347-439366 | MS.gene93774:intron | 35.0% | |
TGTTGATACTTGGTATTCAC+AGG | - | chr4.2:439278-439297 | MS.gene93774:intron | 35.0% | |
TGTTTAAGCAACATGGAGAT+TGG | - | chr4.2:439354-439373 | MS.gene93774:intron | 35.0% | |
TTCCATCCAACAACTTAGAT+TGG | + | chr4.2:437213-437232 | None:intergenic | 35.0% | |
! | AGAGGACCACATTTAGTTTA+GGG | + | chr4.2:436446-436465 | None:intergenic | 35.0% |
! | ATCGTGGTTTTTGTGGAATT+AGG | - | chr4.2:438910-438929 | MS.gene93774:intron | 35.0% |
! | CTCTGAGAGGTATAAAAATG+AGG | - | chr4.2:437034-437053 | MS.gene93774:intron | 35.0% |
! | TCCATGTTGCTTAAACACAA+TGG | + | chr4.2:439351-439370 | None:intergenic | 35.0% |
! | TTTTCGTGGAATCATTTTCG+TGG | + | chr4.2:438789-438808 | None:intergenic | 35.0% |
!! | AGAGTTTGCTAATGTAATGC+CGG | + | chr4.2:439888-439907 | None:intergenic | 35.0% |
!! | CACATTCTCACGTTTTAATC+TGG | + | chr4.2:440342-440361 | None:intergenic | 35.0% |
!! | TTTATTGGATGATGGTGGTT+TGG | - | chr4.2:439600-439619 | MS.gene93774:intron | 35.0% |
AAACATTACTTAGCGCGTTC+AGG | + | chr4.2:437916-437935 | None:intergenic | 40.0% | |
AACATTACTTAGCGCGTTCA+GGG | + | chr4.2:437915-437934 | None:intergenic | 40.0% | |
AAGGTAACCCATGACTTCTT+TGG | + | chr4.2:439310-439329 | None:intergenic | 40.0% | |
AGATAGATTCGTAAGGACCT+TGG | + | chr4.2:435956-435975 | None:intergenic | 40.0% | |
ATGGTGTCTCTAAACACACT+AGG | + | chr4.2:439914-439933 | None:intergenic | 40.0% | |
ATTATGGAGTCGTCAACATC+AGG | - | chr4.2:440741-440760 | MS.gene93774:CDS | 40.0% | |
CATCGGTAGAAACTTTCAAG+AGG | + | chr4.2:436340-436359 | None:intergenic | 40.0% | |
CATGCAGTACTAAAATTCGC+AGG | + | chr4.2:440108-440127 | None:intergenic | 40.0% | |
CTTTCATATTAAAGCAGGGC+CGG | - | chr4.2:439866-439885 | MS.gene93774:intron | 40.0% | |
GATTGTGCTAGAGTAAGAGT+CGG | + | chr4.2:437986-438005 | None:intergenic | 40.0% | |
GGTTAACACCAAAGAAGTCA+TGG | - | chr4.2:439299-439318 | MS.gene93774:intron | 40.0% | |
GTCTAGCCCTAAACTAAATG+TGG | - | chr4.2:436437-436456 | MS.gene93774:intron | 40.0% | |
TTACCCACTTCCATGTTGTT+GGG | + | chr4.2:440653-440672 | None:intergenic | 40.0% | |
TTATCTGACACATGGATCAC+AGG | - | chr4.2:436268-436287 | MS.gene93774:intron | 40.0% | |
TTCTTCATTGTGAGCGAATG+AGG | + | chr4.2:435799-435818 | None:intergenic | 40.0% | |
TTTACCCACTTCCATGTTGT+TGG | + | chr4.2:440654-440673 | None:intergenic | 40.0% | |
TTTGCAAGTCTTGGAGTCAT+TGG | - | chr4.2:438619-438638 | MS.gene93774:intron | 40.0% | |
! | ATTACCTCTGGTGCCAATTT+CGG | + | chr4.2:436676-436695 | None:intergenic | 40.0% |
! | GAGAGGACCACATTTAGTTT+AGG | + | chr4.2:436447-436466 | None:intergenic | 40.0% |
! | TTTTAGTACTGCATGGTGGT+TGG | - | chr4.2:440113-440132 | MS.gene93774:intron | 40.0% |
! | TTTTGCAGTACGTCGTGTTT+TGG | - | chr4.2:439651-439670 | MS.gene93774:intron | 40.0% |
! | TTTTGTGGAATTAGGCTTCG+TGG | - | chr4.2:438918-438937 | MS.gene93774:intron | 40.0% |
!! | CGAATTTTAGTACTGCATGG+TGG | - | chr4.2:440109-440128 | MS.gene93774:intron | 40.0% |
!! | CTGCGAATTTTAGTACTGCA+TGG | - | chr4.2:440106-440125 | MS.gene93774:intron | 40.0% |
AAAACTCGGTATCCGATCCA+AGG | - | chr4.2:436531-436550 | MS.gene93774:intron | 45.0% | |
AACCAGGAACCTTTAGTAGC+AGG | - | chr4.2:440699-440718 | MS.gene93774:CDS | 45.0% | |
AAGACCCAACAACATGGAAG+TGG | - | chr4.2:440646-440665 | MS.gene93774:CDS | 45.0% | |
AAGATCCCAAACCAACCACT+AGG | - | chr4.2:436727-436746 | MS.gene93774:intron | 45.0% | |
AATTAGGCTTCGTGGCATCT+AGG | - | chr4.2:438958-438977 | MS.gene93774:intron | 45.0% | |
AGACCCAACAACATGGAAGT+GGG | - | chr4.2:440647-440666 | MS.gene93774:CDS | 45.0% | |
AGCCATAGCAAAGCTCTGTA+TGG | - | chr4.2:436641-436660 | MS.gene93774:CDS | 45.0% | |
ATTCAAGTATAGGGCGAGAG+AGG | + | chr4.2:436464-436483 | None:intergenic | 45.0% | |
CAACGTTCTTGCACTACTTC+AGG | - | chr4.2:438018-438037 | MS.gene93774:intron | 45.0% | |
CACGATGAGACACAATGCAA+CGG | + | chr4.2:438896-438915 | None:intergenic | 45.0% | |
CTTTGGCAGCAATCATGGTA+GGG | + | chr4.2:438828-438847 | None:intergenic | 45.0% | |
GATTTGCCAACGTCACAACA+TGG | + | chr4.2:436146-436165 | None:intergenic | 45.0% | |
GGAGAATGTGAGAAAGAACC+AGG | - | chr4.2:440683-440702 | MS.gene93774:CDS | 45.0% | |
GTCCATACAGAGCTTTGCTA+TGG | + | chr4.2:436646-436665 | None:intergenic | 45.0% | |
TCACACTTCATGACTCTGAG+AGG | - | chr4.2:437021-437040 | MS.gene93774:intron | 45.0% | |
TCAGACAAACGAGCATAGCA+AGG | + | chr4.2:439736-439755 | None:intergenic | 45.0% | |
TGTGATCCATGTTGTGACGT+TGG | - | chr4.2:436137-436156 | MS.gene93774:intron | 45.0% | |
TGTTGTGACGTTGGCAAATC+AGG | - | chr4.2:436146-436165 | MS.gene93774:intron | 45.0% | |
TTCAGGAAGACCCAACAACA+TGG | - | chr4.2:440640-440659 | MS.gene93774:CDS | 45.0% | |
TTCCATGCAAGCCATCGTTT+GGG | + | chr4.2:435875-435894 | None:intergenic | 45.0% | |
TTTGTCTGATGATCGCTGGT+TGG | - | chr4.2:439747-439766 | MS.gene93774:intron | 45.0% | |
! | GTGTCTCATCGTGGTTTTTG+TGG | - | chr4.2:438903-438922 | MS.gene93774:intron | 45.0% |
!! | AGAGCGTTTTCTCGAAGATC+AGG | + | chr4.2:435922-435941 | None:intergenic | 45.0% |
!! | GATTGAGTAGAAGCACCAAG+AGG | + | chr4.2:435841-435860 | None:intergenic | 45.0% |
!! | GTTGACCTAGTGGTTGGTTT+GGG | + | chr4.2:436735-436754 | None:intergenic | 45.0% |
!! | TAGTGGTTGGTTTGGGATCT+TGG | + | chr4.2:436728-436747 | None:intergenic | 45.0% |
!! | TGGCATCTCACTCTGAAACA+AGG | - | chr4.2:438252-438271 | MS.gene93774:intron | 45.0% |
AAGAACCACTGCCCAAACGA+TGG | - | chr4.2:435861-435880 | MS.gene93774:CDS | 50.0% | |
AATTAGGCTTCGTGGCATCG+TGG | - | chr4.2:438926-438945 | MS.gene93774:intron | 50.0% | |
ACCACTAGGTCAACCCCAAA+TGG | - | chr4.2:436741-436760 | MS.gene93774:intron | 50.0% | |
AGTCATTGGCGCCTTAGTGA+AGG | - | chr4.2:438633-438652 | MS.gene93774:intron | 50.0% | |
ATCGAACCTGAGACCTTGAG+AGG | - | chr4.2:436694-436713 | MS.gene93774:intron | 50.0% | |
ATGGACTTGCCCACCGAAAT+TGG | - | chr4.2:436660-436679 | MS.gene93774:intron | 50.0% | |
CACCTGCTACTAAAGGTTCC+TGG | + | chr4.2:440704-440723 | None:intergenic | 50.0% | |
CAGGAACCTTTAGTAGCAGG+TGG | - | chr4.2:440702-440721 | MS.gene93774:CDS | 50.0% | |
CCACTAGGTCAACCCCAAAT+GGG | - | chr4.2:436742-436761 | MS.gene93774:intron | 50.0% | |
CGTTGCATTGTGTCTCATCG+TGG | - | chr4.2:438894-438913 | MS.gene93774:intron | 50.0% | |
CTCGTTTGTCTGATGATCGC+TGG | - | chr4.2:439743-439762 | MS.gene93774:intron | 50.0% | |
CTTTCCAGGCCTTTCTTTCC+AGG | - | chr4.2:440390-440409 | MS.gene93774:intron | 50.0% | |
GAACCTTTAGTAGCAGGTGG+AGG | - | chr4.2:440705-440724 | MS.gene93774:CDS | 50.0% | |
GCTTTGGCAGCAATCATGGT+AGG | + | chr4.2:438829-438848 | None:intergenic | 50.0% | |
GTCTCAGGTTCGATTACCTC+TGG | + | chr4.2:436688-436707 | None:intergenic | 50.0% | |
GTGCTAGAGTAAGAGTCGGT+GGG | + | chr4.2:437982-438001 | None:intergenic | 50.0% | |
GTTCCATGCAAGCCATCGTT+TGG | + | chr4.2:435876-435895 | None:intergenic | 50.0% | |
TCTCCTCCACCTGCTACTAA+AGG | + | chr4.2:440711-440730 | None:intergenic | 50.0% | |
TCTTCGTCTGTAGCTCCTCT+TGG | - | chr4.2:435823-435842 | MS.gene93774:CDS | 50.0% | |
TGCTAGAGTAAGAGTCGGTG+GGG | + | chr4.2:437981-438000 | None:intergenic | 50.0% | |
TGTGCTAGAGTAAGAGTCGG+TGG | + | chr4.2:437983-438002 | None:intergenic | 50.0% | |
TTGACCTGGAAAGAAAGGCC+TGG | + | chr4.2:440397-440416 | None:intergenic | 50.0% | |
! | GAAGTGGGTAAAGCACTTGC+AGG | - | chr4.2:440662-440681 | MS.gene93774:CDS | 50.0% |
! | GGTTGACCTAGTGGTTGGTT+TGG | + | chr4.2:436736-436755 | None:intergenic | 50.0% |
! | TCGTGGCATCGTGGTTTTTG+TGG | - | chr4.2:438935-438954 | MS.gene93774:intron | 50.0% |
! | TTGGGCTTTGGCAGCAATCA+TGG | + | chr4.2:438833-438852 | None:intergenic | 50.0% |
! | TTTGGGGTTGACCTAGTGGT+TGG | + | chr4.2:436741-436760 | None:intergenic | 50.0% |
AATCCCACTGCTCACTTGCG+GGG | - | chr4.2:436565-436584 | MS.gene93774:intron | 55.0% | |
CAATCCCACTGCTCACTTGC+GGG | - | chr4.2:436564-436583 | MS.gene93774:intron | 55.0% | |
CCAATCCCACTGCTCACTTG+CGG | - | chr4.2:436563-436582 | MS.gene93774:intron | 55.0% | |
CTTGGAGTGTGCTCCTCTCA+AGG | + | chr4.2:436710-436729 | None:intergenic | 55.0% | |
TGGTCAGTCGGTCCTTGGAT+CGG | + | chr4.2:436546-436565 | None:intergenic | 55.0% | |
TGTGCTCCTCTCAAGGTCTC+AGG | + | chr4.2:436703-436722 | None:intergenic | 55.0% | |
! | ACCTCTGGTGCCAATTTCGG+TGG | + | chr4.2:436673-436692 | None:intergenic | 55.0% |
! | CCCATTTGGGGTTGACCTAG+TGG | + | chr4.2:436745-436764 | None:intergenic | 55.0% |
! | CCTCTGGTGCCAATTTCGGT+GGG | + | chr4.2:436672-436691 | None:intergenic | 55.0% |
! | TGCCCAAACGATGGCTTGCA+TGG | - | chr4.2:435870-435889 | MS.gene93774:CDS | 55.0% |
!! | GAGCAGTGGGATTGGTCAGT+CGG | + | chr4.2:436558-436577 | None:intergenic | 55.0% |
ATCCCACTGCTCACTTGCGG+GGG | - | chr4.2:436566-436585 | MS.gene93774:intron | 60.0% | |
CCCACCGAAATTGGCACCAG+AGG | - | chr4.2:436669-436688 | MS.gene93774:intron | 60.0% | |
CCGCAAGTGAGCAGTGGGAT+TGG | + | chr4.2:436566-436585 | None:intergenic | 60.0% | |
CGCTCTTCGTGTGCTCTCCA+AGG | - | chr4.2:435936-435955 | MS.gene93774:intron | 60.0% | |
GCAAGCCATCGTTTGGGCAG+TGG | + | chr4.2:435869-435888 | None:intergenic | 60.0% | |
!! | GGGATTGGTCAGTCGGTCCT+TGG | + | chr4.2:436551-436570 | None:intergenic | 60.0% |
TCCCACTGCTCACTTGCGGG+GGG | - | chr4.2:436567-436586 | MS.gene93774:intron | 65.0% | |
ACTGCTCACTTGCGGGGGGG+GGG | - | chr4.2:436571-436590 | MS.gene93774:intron | 70.0% | |
CACTGCTCACTTGCGGGGGG+GGG | - | chr4.2:436570-436589 | MS.gene93774:intron | 70.0% | |
CCACTGCTCACTTGCGGGGG+GGG | - | chr4.2:436569-436588 | MS.gene93774:intron | 70.0% | |
CCCACTGCTCACTTGCGGGG+GGG | - | chr4.2:436568-436587 | MS.gene93774:intron | 70.0% | |
CCCCCCCGCAAGTGAGCAGT+GGG | + | chr4.2:436571-436590 | None:intergenic | 70.0% | |
CCCCCCCCGCAAGTGAGCAG+TGG | + | chr4.2:436572-436591 | None:intergenic | 75.0% | |
CTGCTCACTTGCGGGGGGGG+GGG | - | chr4.2:436572-436591 | MS.gene93774:intron | 75.0% | |
TGCTCACTTGCGGGGGGGGG+GGG | - | chr4.2:436573-436592 | MS.gene93774:intron | 75.0% | |
! | CTCACTTGCGGGGGGGGGGG+GGG | - | chr4.2:436575-436594 | MS.gene93774:intron | 80.0% |
! | GCTCACTTGCGGGGGGGGGG+GGG | - | chr4.2:436574-436593 | MS.gene93774:intron | 80.0% |
! | TCACTTGCGGGGGGGGGGGG+GGG | - | chr4.2:436576-436595 | MS.gene93774:intron | 80.0% |
! | ACTTGCGGGGGGGGGGGGGG+GGG | - | chr4.2:436578-436597 | MS.gene93774:intron | 85.0% |
! | CACTTGCGGGGGGGGGGGGG+GGG | - | chr4.2:436577-436596 | MS.gene93774:intron | 85.0% |
! | CTTGCGGGGGGGGGGGGGGG+GGG | - | chr4.2:436579-436598 | MS.gene93774:intron | 90.0% |
! | TTGCGGGGGGGGGGGGGGGG+GGG | - | chr4.2:436580-436599 | MS.gene93774:intron | 90.0% |
! | TGCGGGGGGGGGGGGGGGGG+GGG | - | chr4.2:436581-436600 | MS.gene93774:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 435781 | 440770 | 435781 | ID=MS.gene93774 |
chr4.2 | mRNA | 435781 | 440770 | 435781 | ID=MS.gene93774.t1;Parent=MS.gene93774 |
chr4.2 | exon | 440594 | 440770 | 440594 | ID=MS.gene93774.t1.exon1;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 440594 | 440770 | 440594 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 438979 | 439050 | 438979 | ID=MS.gene93774.t1.exon2;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 438979 | 439050 | 438979 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 438512 | 438601 | 438512 | ID=MS.gene93774.t1.exon3;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 438512 | 438601 | 438512 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 438261 | 438303 | 438261 | ID=MS.gene93774.t1.exon4;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 438261 | 438303 | 438261 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 437897 | 438003 | 437897 | ID=MS.gene93774.t1.exon5;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 437897 | 438003 | 437897 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 437156 | 437251 | 437156 | ID=MS.gene93774.t1.exon6;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 437156 | 437251 | 437156 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 436787 | 436977 | 436787 | ID=MS.gene93774.t1.exon7;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 436787 | 436977 | 436787 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 436599 | 436668 | 436599 | ID=MS.gene93774.t1.exon8;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 436599 | 436668 | 436599 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
chr4.2 | exon | 435781 | 435906 | 435781 | ID=MS.gene93774.t1.exon9;Parent=MS.gene93774.t1 |
chr4.2 | CDS | 435781 | 435906 | 435781 | ID=cds.MS.gene93774.t1;Parent=MS.gene93774.t1 |
Gene Sequence |
Protein sequence |