Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93797.t1 | KEH43987.1 | 92 | 163 | 13 | 0 | 1 | 163 | 1 | 163 | 3.20E-79 | 304.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93797.t1 | Q9SRH9 | 43.0 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 1.0e-25 | 118.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93797.t1 | A0A072VQC1 | 92.0 | 163 | 13 | 0 | 1 | 163 | 1 | 163 | 2.3e-79 | 304.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene93797.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93797.t1 | MTR_1g105955 | 92.073 | 164 | 13 | 0 | 1 | 164 | 1 | 164 | 3.42e-111 | 315 |
MS.gene93797.t1 | MTR_3g006150 | 45.806 | 155 | 74 | 3 | 13 | 160 | 5 | 156 | 2.40e-32 | 114 |
MS.gene93797.t1 | MTR_3g006150 | 46.835 | 79 | 38 | 2 | 96 | 173 | 9 | 84 | 2.77e-12 | 62.4 |
MS.gene93797.t1 | MTR_5g036670 | 45.395 | 152 | 76 | 2 | 13 | 157 | 40 | 191 | 2.80e-32 | 122 |
MS.gene93797.t1 | MTR_5g036670 | 51.351 | 74 | 36 | 0 | 96 | 169 | 44 | 117 | 9.07e-17 | 78.2 |
MS.gene93797.t1 | MTR_1g105960 | 52.632 | 114 | 35 | 1 | 17 | 130 | 2 | 96 | 3.02e-32 | 112 |
MS.gene93797.t1 | MTR_1g105960 | 62.195 | 82 | 30 | 1 | 96 | 177 | 2 | 82 | 8.69e-27 | 99.0 |
MS.gene93797.t1 | MTR_1g104960 | 38.953 | 172 | 97 | 2 | 5 | 168 | 2 | 173 | 1.71e-31 | 113 |
MS.gene93797.t1 | MTR_1g104960 | 40.964 | 83 | 49 | 0 | 92 | 174 | 10 | 92 | 5.02e-12 | 62.0 |
MS.gene93797.t1 | MTR_3g006065 | 47.742 | 155 | 71 | 4 | 13 | 160 | 5 | 156 | 2.91e-31 | 112 |
MS.gene93797.t1 | MTR_3g006185 | 41.718 | 163 | 83 | 2 | 13 | 163 | 5 | 167 | 3.84e-30 | 109 |
MS.gene93797.t1 | MTR_8g062700 | 42.138 | 159 | 85 | 2 | 6 | 157 | 32 | 190 | 5.46e-30 | 116 |
MS.gene93797.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 5.91e-19 | 84.7 |
MS.gene93797.t1 | MTR_8g062700 | 42.138 | 159 | 85 | 2 | 6 | 157 | 32 | 190 | 5.96e-30 | 116 |
MS.gene93797.t1 | MTR_8g062700 | 55.405 | 74 | 33 | 0 | 96 | 169 | 43 | 116 | 6.14e-19 | 84.7 |
MS.gene93797.t1 | MTR_3g006125 | 41.071 | 168 | 74 | 3 | 17 | 165 | 90 | 251 | 7.82e-30 | 110 |
MS.gene93797.t1 | MTR_3g006125 | 46.914 | 81 | 42 | 1 | 9 | 88 | 173 | 253 | 1.11e-15 | 73.6 |
MS.gene93797.t1 | MTR_1g104980 | 38.608 | 158 | 88 | 2 | 18 | 174 | 1 | 150 | 1.33e-29 | 108 |
MS.gene93797.t1 | MTR_1g104980 | 39.241 | 79 | 47 | 1 | 10 | 88 | 65 | 142 | 1.99e-11 | 60.5 |
MS.gene93797.t1 | MTR_4g133300 | 41.139 | 158 | 79 | 2 | 15 | 163 | 88 | 240 | 2.51e-29 | 109 |
MS.gene93797.t1 | MTR_4g133300 | 43.333 | 150 | 77 | 3 | 17 | 163 | 13 | 157 | 9.81e-26 | 100 |
MS.gene93797.t1 | MTR_4g133300 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 3.63e-11 | 60.8 |
MS.gene93797.t1 | MTR_6g008970 | 41.558 | 154 | 79 | 3 | 13 | 157 | 60 | 211 | 1.73e-28 | 112 |
MS.gene93797.t1 | MTR_6g008970 | 50.667 | 75 | 37 | 0 | 96 | 170 | 64 | 138 | 4.55e-17 | 79.3 |
MS.gene93797.t1 | MTR_4g133470 | 40.506 | 158 | 80 | 2 | 15 | 163 | 88 | 240 | 2.91e-28 | 106 |
MS.gene93797.t1 | MTR_4g133470 | 43.333 | 150 | 77 | 3 | 17 | 163 | 13 | 157 | 2.70e-25 | 99.0 |
MS.gene93797.t1 | MTR_4g133470 | 43.038 | 79 | 42 | 1 | 91 | 169 | 8 | 83 | 3.63e-11 | 60.8 |
MS.gene93797.t1 | MTR_3g006105 | 41.463 | 164 | 83 | 4 | 13 | 163 | 5 | 168 | 5.19e-27 | 101 |
MS.gene93797.t1 | MTR_3g006105 | 45.783 | 83 | 44 | 1 | 96 | 177 | 9 | 91 | 1.77e-12 | 63.5 |
MS.gene93797.t1 | MTR_6g008995 | 40.667 | 150 | 84 | 1 | 13 | 157 | 34 | 183 | 3.60e-26 | 104 |
MS.gene93797.t1 | MTR_1g109550 | 45.736 | 129 | 63 | 3 | 19 | 145 | 19 | 142 | 3.62e-26 | 98.2 |
MS.gene93797.t1 | MTR_1g109550 | 50.685 | 73 | 35 | 1 | 92 | 164 | 13 | 84 | 3.02e-17 | 75.1 |
MS.gene93797.t1 | MTR_7g013410 | 37.324 | 142 | 83 | 2 | 20 | 157 | 2 | 141 | 1.87e-22 | 88.6 |
MS.gene93797.t1 | MTR_7g013380 | 36.774 | 155 | 89 | 3 | 17 | 162 | 100 | 254 | 9.92e-21 | 87.8 |
MS.gene93797.t1 | MTR_7g013380 | 34.066 | 182 | 108 | 5 | 1 | 173 | 1 | 179 | 6.74e-20 | 85.5 |
MS.gene93797.t1 | MTR_1g105010 | 50.617 | 81 | 40 | 0 | 1 | 81 | 1 | 81 | 1.37e-20 | 83.2 |
MS.gene93797.t1 | MTR_1g105010 | 42.553 | 94 | 48 | 1 | 92 | 185 | 13 | 100 | 1.85e-17 | 75.1 |
MS.gene93797.t1 | MTR_7g089490 | 49.398 | 83 | 42 | 0 | 1 | 83 | 1 | 83 | 6.81e-20 | 81.6 |
MS.gene93797.t1 | MTR_1g104940 | 53.425 | 73 | 34 | 0 | 16 | 88 | 14 | 86 | 4.28e-19 | 79.3 |
MS.gene93797.t1 | MTR_1g104940 | 48.387 | 93 | 47 | 1 | 95 | 187 | 14 | 105 | 2.48e-18 | 77.4 |
MS.gene93797.t1 | MTR_6g008995 | 40.000 | 125 | 70 | 1 | 38 | 157 | 2 | 126 | 9.76e-19 | 83.2 |
MS.gene93797.t1 | MTR_8g062350 | 29.293 | 198 | 88 | 3 | 9 | 157 | 7 | 201 | 2.50e-16 | 74.3 |
MS.gene93797.t1 | MTR_8g062350 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 8.94e-12 | 62.0 |
MS.gene93797.t1 | MTR_1g104937 | 45.205 | 73 | 40 | 0 | 16 | 88 | 12 | 84 | 2.57e-14 | 66.6 |
MS.gene93797.t1 | MTR_1g104937 | 45.000 | 80 | 44 | 0 | 95 | 174 | 12 | 91 | 1.83e-12 | 61.6 |
MS.gene93797.t1 | MTR_1g093310 | 53.226 | 62 | 23 | 1 | 18 | 79 | 11 | 66 | 4.91e-14 | 65.1 |
MS.gene93797.t1 | MTR_1g091047 | 49.180 | 61 | 30 | 1 | 98 | 157 | 12 | 72 | 2.70e-13 | 62.8 |
MS.gene93797.t1 | MTR_1g091047 | 43.750 | 64 | 35 | 1 | 18 | 80 | 11 | 74 | 4.73e-11 | 57.0 |
MS.gene93797.t1 | MTR_2g097830 | 42.574 | 101 | 50 | 3 | 17 | 114 | 71 | 166 | 1.47e-12 | 63.2 |
MS.gene93797.t1 | MTR_2g097830 | 41.584 | 101 | 56 | 1 | 69 | 169 | 44 | 141 | 2.42e-12 | 62.8 |
MS.gene93797.t1 | MTR_3g006000 | 48.052 | 77 | 35 | 4 | 13 | 87 | 4 | 77 | 5.84e-12 | 59.7 |
MS.gene93797.t1 | MTR_3g006000 | 51.852 | 54 | 26 | 0 | 111 | 164 | 24 | 77 | 8.79e-12 | 58.9 |
MS.gene93797.t1 | MTR_1g106560 | 65.854 | 41 | 13 | 1 | 35 | 75 | 16 | 55 | 4.85e-11 | 56.6 |
MS.gene93797.t1 | MTR_3g006010 | 46.479 | 71 | 37 | 1 | 93 | 162 | 6 | 76 | 8.95e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93797.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 3.79e-31 | 119 |
MS.gene93797.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 8.99e-18 | 81.3 |
MS.gene93797.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 4.73e-31 | 119 |
MS.gene93797.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.69e-18 | 81.3 |
MS.gene93797.t1 | AT1G24190 | 43.226 | 155 | 75 | 4 | 13 | 157 | 11 | 162 | 4.87e-31 | 119 |
MS.gene93797.t1 | AT1G24190 | 55.882 | 68 | 30 | 0 | 96 | 163 | 15 | 82 | 9.88e-18 | 81.3 |
MS.gene93797.t1 | AT3G01320 | 43.046 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 1.01e-30 | 118 |
MS.gene93797.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.43e-18 | 82.8 |
MS.gene93797.t1 | AT3G01320 | 43.046 | 151 | 80 | 2 | 13 | 157 | 54 | 204 | 1.04e-30 | 118 |
MS.gene93797.t1 | AT3G01320 | 55.405 | 74 | 33 | 0 | 96 | 169 | 58 | 131 | 2.47e-18 | 82.8 |
MS.gene93797.t1 | AT1G24230 | 35.119 | 168 | 94 | 3 | 13 | 179 | 11 | 164 | 6.84e-30 | 110 |
MS.gene93797.t1 | AT1G24230 | 27.451 | 153 | 93 | 4 | 13 | 154 | 83 | 228 | 1.15e-13 | 67.8 |
MS.gene93797.t1 | AT1G70060 | 41.615 | 161 | 82 | 2 | 7 | 157 | 5 | 163 | 9.75e-30 | 115 |
MS.gene93797.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.71e-18 | 82.8 |
MS.gene93797.t1 | AT1G70060 | 41.615 | 161 | 82 | 2 | 7 | 157 | 5 | 163 | 9.75e-30 | 115 |
MS.gene93797.t1 | AT1G70060 | 54.545 | 77 | 35 | 0 | 96 | 172 | 15 | 91 | 2.71e-18 | 82.8 |
MS.gene93797.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 2.09e-29 | 114 |
MS.gene93797.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.16e-17 | 79.3 |
MS.gene93797.t1 | AT5G15020 | 41.447 | 152 | 80 | 2 | 13 | 157 | 49 | 198 | 2.30e-29 | 114 |
MS.gene93797.t1 | AT5G15020 | 53.521 | 71 | 33 | 0 | 96 | 166 | 53 | 123 | 4.40e-17 | 79.3 |
MS.gene93797.t1 | AT1G24200 | 38.000 | 150 | 89 | 1 | 12 | 157 | 10 | 159 | 1.13e-28 | 106 |
MS.gene93797.t1 | AT1G24200 | 50.000 | 68 | 34 | 0 | 96 | 163 | 15 | 82 | 1.41e-14 | 69.3 |
MS.gene93797.t1 | AT1G27260 | 37.179 | 156 | 83 | 2 | 14 | 156 | 1 | 154 | 4.01e-27 | 103 |
MS.gene93797.t1 | AT1G27260 | 37.349 | 83 | 49 | 1 | 4 | 83 | 78 | 160 | 6.16e-11 | 60.1 |
MS.gene93797.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.30e-25 | 103 |
MS.gene93797.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.57e-15 | 73.6 |
MS.gene93797.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.36e-25 | 103 |
MS.gene93797.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.81e-15 | 73.6 |
MS.gene93797.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.36e-25 | 103 |
MS.gene93797.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.78e-15 | 73.6 |
MS.gene93797.t1 | AT1G59890 | 41.722 | 151 | 73 | 3 | 17 | 157 | 46 | 191 | 1.59e-25 | 103 |
MS.gene93797.t1 | AT1G59890 | 50.000 | 74 | 37 | 0 | 96 | 169 | 46 | 119 | 3.97e-15 | 73.6 |
MS.gene93797.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.69e-25 | 103 |
MS.gene93797.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.33e-12 | 66.2 |
MS.gene93797.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 21 | 179 | 1.69e-25 | 103 |
MS.gene93797.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 34 | 101 | 1.33e-12 | 66.2 |
MS.gene93797.t1 | AT1G10450 | 39.264 | 163 | 83 | 3 | 7 | 157 | 72 | 230 | 1.97e-25 | 103 |
MS.gene93797.t1 | AT1G10450 | 48.529 | 68 | 35 | 0 | 96 | 163 | 85 | 152 | 1.26e-12 | 66.2 |
MS.gene93797.t1 | AT1G70030 | 36.424 | 151 | 89 | 2 | 13 | 157 | 8 | 157 | 1.72e-23 | 92.0 |
MS.gene93797.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 15 | 82 | 4.85e-13 | 64.3 |
MS.gene93797.t1 | AT1G24250 | 30.366 | 191 | 104 | 3 | 1 | 164 | 1 | 189 | 2.24e-21 | 88.6 |
MS.gene93797.t1 | AT1G23810 | 32.759 | 174 | 101 | 3 | 7 | 164 | 5 | 178 | 4.56e-21 | 87.4 |
MS.gene93797.t1 | AT5G15025 | 57.353 | 68 | 29 | 0 | 13 | 80 | 44 | 111 | 5.73e-20 | 81.6 |
MS.gene93797.t1 | AT5G15025 | 44.000 | 75 | 42 | 0 | 96 | 170 | 48 | 122 | 4.46e-14 | 66.2 |
MS.gene93797.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.06e-18 | 77.4 |
MS.gene93797.t1 | AT5G15040 | 44.595 | 74 | 41 | 0 | 93 | 166 | 1 | 74 | 5.67e-13 | 62.4 |
MS.gene93797.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.06e-18 | 77.4 |
MS.gene93797.t1 | AT5G15040 | 44.595 | 74 | 41 | 0 | 93 | 166 | 1 | 74 | 5.67e-13 | 62.4 |
MS.gene93797.t1 | AT5G15040 | 53.623 | 69 | 32 | 0 | 14 | 82 | 1 | 69 | 1.06e-18 | 77.4 |
MS.gene93797.t1 | AT5G15040 | 44.595 | 74 | 41 | 0 | 93 | 166 | 1 | 74 | 5.67e-13 | 62.4 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 3.88e-18 | 82.4 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.22e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.23e-18 | 82.4 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.53e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.33e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.72e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.33e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.72e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 238 | 303 | 4.34e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 241 | 314 | 5.84e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.37e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 5.89e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.78e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.31e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 4.79e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 6.44e-15 | 73.2 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 5.50e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 7.18e-15 | 72.8 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 5.50e-18 | 82.0 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 7.18e-15 | 72.8 |
MS.gene93797.t1 | AT4G12020 | 59.701 | 67 | 26 | 1 | 13 | 79 | 305 | 370 | 9.01e-18 | 81.3 |
MS.gene93797.t1 | AT4G12020 | 46.667 | 75 | 39 | 1 | 95 | 169 | 308 | 381 | 1.08e-14 | 72.4 |
MS.gene93797.t1 | AT1G70030 | 36.800 | 125 | 71 | 2 | 1 | 117 | 7 | 131 | 7.93e-17 | 73.9 |
MS.gene93797.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 2.53e-13 | 64.7 |
MS.gene93797.t1 | AT1G27250 | 45.000 | 80 | 42 | 1 | 2 | 79 | 5 | 84 | 1.98e-16 | 72.8 |
MS.gene93797.t1 | AT1G27250 | 42.857 | 77 | 44 | 0 | 86 | 162 | 12 | 88 | 1.45e-12 | 62.8 |
MS.gene93797.t1 | AT1G70030 | 39.394 | 99 | 54 | 1 | 13 | 105 | 19 | 117 | 4.74e-16 | 71.6 |
MS.gene93797.t1 | AT1G70030 | 44.118 | 68 | 38 | 0 | 99 | 166 | 26 | 93 | 1.58e-13 | 65.1 |
MS.gene93797.t1 | AT1G27270 | 34.146 | 164 | 84 | 3 | 15 | 156 | 13 | 174 | 5.42e-15 | 71.2 |
MS.gene93797.t1 | AT1G27220 | 45.205 | 73 | 38 | 1 | 9 | 79 | 5 | 77 | 1.33e-14 | 69.3 |
MS.gene93797.t1 | AT1G27220 | 42.308 | 78 | 45 | 0 | 86 | 163 | 5 | 82 | 4.46e-13 | 65.1 |
MS.gene93797.t1 | AT1G27280 | 30.070 | 143 | 91 | 1 | 28 | 161 | 5 | 147 | 1.31e-13 | 67.4 |
MS.gene93797.t1 | AT1G27280 | 39.394 | 66 | 40 | 0 | 13 | 78 | 78 | 143 | 4.23e-11 | 60.5 |
MS.gene93797.t1 | AT1G27240 | 39.437 | 71 | 43 | 0 | 12 | 82 | 10 | 80 | 1.98e-12 | 63.5 |
MS.gene93797.t1 | AT5G35610 | 42.667 | 75 | 42 | 1 | 6 | 80 | 1 | 74 | 2.52e-11 | 59.7 |
MS.gene93797.t1 | AT1G24210 | 41.096 | 73 | 43 | 0 | 13 | 85 | 11 | 83 | 4.31e-11 | 59.3 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAATTTGTGAAAGCTATTA+AGG | 0.207434 | 1.2:+78762586 | MS.gene93797:CDS |
AGATTGAAGGATTTGTTTAA+AGG | 0.287517 | 1.2:+78762413 | MS.gene93797:CDS |
TAATCAAACTTGCTCCCTTT+TGG | 0.325065 | 1.2:-78762473 | None:intergenic |
AAAGGGAGCAAGTTTGATTA+TGG | 0.329129 | 1.2:+78762476 | MS.gene93797:CDS |
GTACTGATTTGATATTTCTT+TGG | 0.342104 | 1.2:-78762710 | None:intergenic |
AGAGTGAAGGAACTATTTAA+AGG | 0.356818 | 1.2:+78762650 | MS.gene93797:CDS |
GATTGAAGGATTTGTTTAAA+GGG | 0.359025 | 1.2:+78762414 | MS.gene93797:CDS |
AAATGTTATGATGGATTTCA+AGG | 0.397261 | 1.2:+78762358 | MS.gene93797:CDS |
GCTTCTTCCAACACTCCAAA+TGG | 0.411742 | 1.2:-78762506 | None:intergenic |
GGGCATACAAATTTAACGTT+GGG | 0.437947 | 1.2:+78762671 | MS.gene93797:CDS |
GATTATGGCATAGATCCATT+TGG | 0.439528 | 1.2:+78762491 | MS.gene93797:CDS |
TTCAACATCTTCGTGCCAAA+AGG | 0.444915 | 1.2:+78762458 | MS.gene93797:CDS |
GAGTGAAGGAACTATTTAAA+GGG | 0.467701 | 1.2:+78762651 | MS.gene93797:CDS |
CATAGATCCATTTGGAGTGT+TGG | 0.482305 | 1.2:+78762499 | MS.gene93797:CDS |
TATCAAATCAGTACTGATGA+TGG | 0.498943 | 1.2:+78762719 | MS.gene93797:CDS |
TCAACATCTTCGTGCCAAAA+GGG | 0.534332 | 1.2:+78762459 | MS.gene93797:CDS |
TCCATGAGACATGTTATCGC+TGG | 0.536428 | 1.2:-78762246 | None:intergenic |
TGGTGTCATAGCAAGATTGA+AGG | 0.543726 | 1.2:+78762400 | MS.gene93797:CDS |
AGGGCATACAAATTTAACGT+TGG | 0.547701 | 1.2:+78762670 | MS.gene93797:CDS |
TCCAGCGATAACATGTCTCA+TGG | 0.552003 | 1.2:+78762245 | MS.gene93797:CDS |
AGTTGAGTTTCAATATGAGA+GGG | 0.554210 | 1.2:+78762553 | MS.gene93797:CDS |
TGACGTAGAAGCAGAAGACA+TGG | 0.554579 | 1.2:+78762805 | MS.gene93797:CDS |
GCTATTGCTTCTTCCATCGT+GGG | 0.554911 | 1.2:-78762275 | None:intergenic |
GAAAGCTATTAAGGATTGCA+AGG | 0.560574 | 1.2:+78762595 | MS.gene93797:CDS |
TGCTATTGCTTCTTCCATCG+TGG | 0.562428 | 1.2:-78762276 | None:intergenic |
AAGTTGAGTTTCAATATGAG+AGG | 0.581901 | 1.2:+78762552 | MS.gene93797:CDS |
AGAAGCAGAAGACATGGAAG+TGG | 0.582532 | 1.2:+78762811 | MS.gene93797:CDS |
ATGTCTCGCGAAAAGAGTGA+AGG | 0.647795 | 1.2:+78762637 | MS.gene93797:CDS |
AGAAGCAATAGCATATGTCG+AGG | 0.681954 | 1.2:+78762286 | MS.gene93797:CDS |
TCATGGAGAAGTTCCCACGA+TGG | 0.689488 | 1.2:+78762262 | MS.gene93797:CDS |
GCTATGAGAATTGATACAAG+TGG | 0.693715 | 1.2:+78762380 | MS.gene93797:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGAATTTTTAAATGTTATGA+TGG | + | chr1.2:78762349-78762368 | MS.gene93797:CDS | 15.0% |
! | TGAATTTGTGAAAGCTATTA+AGG | + | chr1.2:78762586-78762605 | MS.gene93797:CDS | 25.0% |
!! | AGATTGAAGGATTTGTTTAA+AGG | + | chr1.2:78762413-78762432 | MS.gene93797:CDS | 25.0% |
!! | GATTGAAGGATTTGTTTAAA+GGG | + | chr1.2:78762414-78762433 | MS.gene93797:CDS | 25.0% |
!!! | AAATGTTATGATGGATTTCA+AGG | + | chr1.2:78762358-78762377 | MS.gene93797:CDS | 25.0% |
!!! | GTACTGATTTGATATTTCTT+TGG | - | chr1.2:78762713-78762732 | None:intergenic | 25.0% |
AAGTTGAGTTTCAATATGAG+AGG | + | chr1.2:78762552-78762571 | MS.gene93797:CDS | 30.0% | |
AGAGTGAAGGAACTATTTAA+AGG | + | chr1.2:78762650-78762669 | MS.gene93797:CDS | 30.0% | |
AGTTGAGTTTCAATATGAGA+GGG | + | chr1.2:78762553-78762572 | MS.gene93797:CDS | 30.0% | |
GAGTGAAGGAACTATTTAAA+GGG | + | chr1.2:78762651-78762670 | MS.gene93797:CDS | 30.0% | |
!! | GGGCACACAAATTTAATTTT+AGG | + | chr1.2:78762434-78762453 | MS.gene93797:CDS | 30.0% |
!! | TATCAAATCAGTACTGATGA+TGG | + | chr1.2:78762719-78762738 | MS.gene93797:CDS | 30.0% |
AAAGGGAGCAAGTTTGATTA+TGG | + | chr1.2:78762476-78762495 | MS.gene93797:CDS | 35.0% | |
AGGGCATACAAATTTAACGT+TGG | + | chr1.2:78762670-78762689 | MS.gene93797:CDS | 35.0% | |
GAAAGCTATTAAGGATTGCA+AGG | + | chr1.2:78762595-78762614 | MS.gene93797:CDS | 35.0% | |
GATTATGGCATAGATCCATT+TGG | + | chr1.2:78762491-78762510 | MS.gene93797:CDS | 35.0% | |
GCTATGAGAATTGATACAAG+TGG | + | chr1.2:78762380-78762399 | MS.gene93797:CDS | 35.0% | |
GGGCATACAAATTTAACGTT+GGG | + | chr1.2:78762671-78762690 | MS.gene93797:CDS | 35.0% | |
! | GAAACTCAACTTTTACTGCA+TGG | - | chr1.2:78762544-78762563 | None:intergenic | 35.0% |
!! | TAATCAAACTTGCTCCCTTT+TGG | - | chr1.2:78762476-78762495 | None:intergenic | 35.0% |
AGAAGCAATAGCATATGTCG+AGG | + | chr1.2:78762286-78762305 | MS.gene93797:CDS | 40.0% | |
TCAACATCTTCGTGCCAAAA+GGG | + | chr1.2:78762459-78762478 | MS.gene93797:CDS | 40.0% | |
TTCAACATCTTCGTGCCAAA+AGG | + | chr1.2:78762458-78762477 | MS.gene93797:CDS | 40.0% | |
! | CATAGATCCATTTGGAGTGT+TGG | + | chr1.2:78762499-78762518 | MS.gene93797:CDS | 40.0% |
!! | TGGTGTCATAGCAAGATTGA+AGG | + | chr1.2:78762400-78762419 | MS.gene93797:CDS | 40.0% |
AGAAGCAGAAGACATGGAAG+TGG | + | chr1.2:78762811-78762830 | MS.gene93797:CDS | 45.0% | |
ATGTCTCGCGAAAAGAGTGA+AGG | + | chr1.2:78762637-78762656 | MS.gene93797:CDS | 45.0% | |
GCTATTGCTTCTTCCATCGT+GGG | - | chr1.2:78762278-78762297 | None:intergenic | 45.0% | |
GCTTCTTCCAACACTCCAAA+TGG | - | chr1.2:78762509-78762528 | None:intergenic | 45.0% | |
TCCAGCGATAACATGTCTCA+TGG | + | chr1.2:78762245-78762264 | MS.gene93797:CDS | 45.0% | |
TCCATGAGACATGTTATCGC+TGG | - | chr1.2:78762249-78762268 | None:intergenic | 45.0% | |
TGACGTAGAAGCAGAAGACA+TGG | + | chr1.2:78762805-78762824 | MS.gene93797:CDS | 45.0% | |
TGCTATTGCTTCTTCCATCG+TGG | - | chr1.2:78762279-78762298 | None:intergenic | 45.0% | |
TCATGGAGAAGTTCCCACGA+TGG | + | chr1.2:78762262-78762281 | MS.gene93797:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 78762242 | 78762838 | 78762242 | ID=MS.gene93797 |
chr1.2 | mRNA | 78762242 | 78762838 | 78762242 | ID=MS.gene93797.t1;Parent=MS.gene93797 |
chr1.2 | exon | 78762242 | 78762838 | 78762242 | ID=MS.gene93797.t1.exon1;Parent=MS.gene93797.t1 |
chr1.2 | CDS | 78762242 | 78762838 | 78762242 | ID=cds.MS.gene93797.t1;Parent=MS.gene93797.t1 |
Gene Sequence |
Protein sequence |