AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93801.t1 MTR_2g105290 76.190 168 40 0 1 168 3 170 4.78e-93 268
MS.gene93801.t1 MTR_8g086290 73.939 165 43 0 1 165 3 167 1.56e-88 256
MS.gene93801.t1 MTR_4g127140 72.472 178 39 2 1 168 3 180 5.30e-80 235
MS.gene93801.t1 MTR_7g028448 77.987 159 27 2 1 159 3 153 1.31e-76 226
MS.gene93801.t1 MTR_4g036915 77.987 159 27 2 1 159 3 153 1.31e-76 226
MS.gene93801.t1 MTR_1g106070 41.176 170 90 2 6 168 5 171 2.73e-42 139
MS.gene93801.t1 MTR_3g052920 42.353 170 88 2 6 168 5 171 3.52e-41 138
MS.gene93801.t1 MTR_1g105910 41.765 170 89 2 6 168 5 171 3.69e-41 138
MS.gene93801.t1 MTR_1g105920 41.176 170 90 2 6 168 5 171 4.20e-41 138
MS.gene93801.t1 MTR_8g043650 41.765 170 89 2 6 168 5 171 4.34e-41 138
MS.gene93801.t1 MTR_1g012570 41.765 170 89 2 6 168 5 171 1.19e-40 137
MS.gene93801.t1 MTR_2g030740 41.176 170 90 2 6 168 5 171 4.20e-40 135
MS.gene93801.t1 MTR_3g080940 40.828 169 96 1 4 168 3 171 1.56e-38 130
MS.gene93801.t1 MTR_1g108510 42.857 168 80 5 6 163 5 166 1.20e-36 126
MS.gene93801.t1 MTR_3g030770 41.212 165 87 2 6 163 5 166 9.60e-36 124
MS.gene93801.t1 MTR_1g108580 40.000 165 89 2 6 163 5 166 1.40e-34 121
MS.gene93801.t1 MTR_5g053390 40.698 172 88 4 6 168 5 171 1.31e-33 119
MS.gene93801.t1 MTR_3g052870 45.600 125 58 2 6 123 5 126 1.37e-33 118
MS.gene93801.t1 MTR_2g093190 40.606 165 88 2 6 163 5 166 3.01e-33 118
MS.gene93801.t1 MTR_0121s0080 40.645 155 88 1 6 156 5 159 1.07e-32 116
MS.gene93801.t1 MTR_1g077360 39.394 165 90 2 6 163 5 166 4.98e-32 115
MS.gene93801.t1 MTR_1g105905 38.854 157 86 2 19 168 1 154 6.42e-32 114
MS.gene93801.t1 MTR_5g045560 38.554 166 96 2 6 166 5 169 2.36e-31 113
MS.gene93801.t1 MTR_2g085280 37.427 171 95 3 6 168 5 171 6.81e-31 112
MS.gene93801.t1 MTR_2g085250 37.427 171 95 3 6 168 5 171 6.81e-31 112
MS.gene93801.t1 MTR_1g075600 38.509 161 89 2 6 159 5 162 3.77e-30 110
MS.gene93801.t1 MTR_0121s0100 46.154 117 53 2 6 115 5 118 3.10e-29 104
MS.gene93801.t1 MTR_5g055100 35.838 173 95 4 6 168 5 171 4.19e-28 105
MS.gene93801.t1 MTR_3g030780 45.455 121 55 2 6 119 5 121 6.23e-28 101
MS.gene93801.t1 MTR_8g046350 40.000 130 75 3 10 137 2 130 2.05e-26 98.6
MS.gene93801.t1 MTR_1g047550 42.718 103 57 1 10 110 2 104 4.51e-25 95.5
MS.gene93801.t1 MTR_8g079502 41.818 110 62 1 10 117 2 111 5.50e-25 95.5
MS.gene93801.t1 MTR_4g131030 38.971 136 75 4 10 140 2 134 6.60e-25 96.3
MS.gene93801.t1 MTR_7g062350 38.356 146 80 2 26 164 37 179 2.72e-24 95.1
MS.gene93801.t1 MTR_8g051580 39.167 120 70 2 10 126 2 121 1.34e-23 92.0
MS.gene93801.t1 MTR_1g054265 42.308 104 58 1 10 111 2 105 1.54e-23 91.3
MS.gene93801.t1 MTR_8g022970 35.404 161 97 3 2 159 14 170 1.50e-22 89.4
MS.gene93801.t1 MTR_4g094632 43.750 96 53 1 10 105 2 96 4.89e-22 87.0
MS.gene93801.t1 MTR_3g067875 60.714 56 22 0 19 74 1 56 2.57e-21 82.8
MS.gene93801.t1 MTR_4g094638 45.000 80 44 0 10 89 2 81 8.15e-21 84.7
MS.gene93801.t1 MTR_1g063160 36.752 117 71 2 10 123 2 118 2.39e-20 83.2
MS.gene93801.t1 MTR_3g067870 54.545 66 30 0 17 82 83 148 8.83e-20 81.3
MS.gene93801.t1 MTR_3g109930 38.028 142 85 3 21 159 12 153 2.02e-19 80.9
MS.gene93801.t1 MTR_3g005530 38.182 110 66 1 10 117 2 111 2.98e-19 81.6
MS.gene93801.t1 MTR_2g017865 42.553 94 51 1 1 94 8 98 1.06e-18 80.9
MS.gene93801.t1 MTR_3g437790 35.714 140 81 3 27 159 30 167 1.19e-18 79.0
MS.gene93801.t1 MTR_8g087860 40.909 110 57 2 2 109 10 113 1.37e-18 80.1
MS.gene93801.t1 MTR_6g464720 34.940 166 87 6 10 166 2 155 1.74e-18 80.1
MS.gene93801.t1 MTR_1g108500 68.000 50 16 0 23 72 110 159 1.89e-18 81.3
MS.gene93801.t1 MTR_0003s0590 36.478 159 90 2 10 168 2 149 3.34e-18 79.3
MS.gene93801.t1 MTR_3g452380 41.111 90 53 0 6 95 13 102 3.97e-18 79.0
MS.gene93801.t1 MTR_5g066180 48.529 68 35 0 10 77 2 69 5.97e-18 78.2
MS.gene93801.t1 MTR_4g109810 34.752 141 74 4 10 148 2 126 7.10e-18 78.2
MS.gene93801.t1 MTR_1g053070 52.941 68 32 0 10 77 2 69 7.89e-18 78.2
MS.gene93801.t1 MTR_1g029670 50.000 64 32 0 10 73 2 65 1.01e-17 76.6
MS.gene93801.t1 MTR_8g033270 51.471 68 33 0 10 77 2 69 1.08e-17 77.8
MS.gene93801.t1 MTR_1g101970 36.646 161 90 8 10 166 2 154 1.08e-17 76.6
MS.gene93801.t1 MTR_2g009890 40.594 101 38 1 10 110 2 80 1.54e-17 77.8
MS.gene93801.t1 MTR_3g088615 50.000 64 32 0 10 73 2 65 1.77e-17 75.9
MS.gene93801.t1 MTR_4g084740 49.296 71 35 1 10 79 2 72 2.88e-17 77.8
MS.gene93801.t1 MTR_4g102530 36.364 154 86 4 11 161 3 147 3.13e-17 75.9
MS.gene93801.t1 MTR_4g093970 52.857 70 30 1 11 77 29 98 3.32e-17 76.3
MS.gene93801.t1 MTR_1g038300 34.783 161 91 6 10 167 2 151 5.05e-17 75.9
MS.gene93801.t1 MTR_3g102570 54.286 70 31 1 10 78 2 71 5.22e-17 77.0
MS.gene93801.t1 MTR_5g066960 52.632 57 27 0 10 66 2 58 5.82e-17 71.2
MS.gene93801.t1 MTR_8g066260 43.478 92 40 2 10 92 2 90 7.25e-17 75.5
MS.gene93801.t1 MTR_5g032150 52.239 67 32 0 11 77 3 69 1.29e-16 74.7
MS.gene93801.t1 MTR_5g032520 52.239 67 32 0 11 77 3 69 1.33e-16 74.7
MS.gene93801.t1 MTR_3g067910 57.143 56 24 0 23 78 3 58 1.42e-16 71.6
MS.gene93801.t1 MTR_2g461710 57.407 54 23 0 10 63 2 55 1.50e-16 70.1
MS.gene93801.t1 MTR_5g021270 50.000 72 34 1 10 79 2 73 1.53e-16 74.3
MS.gene93801.t1 MTR_4g109830 49.275 69 34 1 10 77 2 70 1.57e-16 74.3
MS.gene93801.t1 MTR_5g021270 50.000 72 34 1 10 79 2 73 1.60e-16 74.3
MS.gene93801.t1 MTR_3g113030 52.381 63 30 0 10 72 2 64 1.64e-16 74.3
MS.gene93801.t1 MTR_5g046870 51.515 66 30 1 10 73 2 67 1.69e-16 71.6
MS.gene93801.t1 MTR_5g031000 45.588 68 37 0 10 77 2 69 1.88e-16 73.9
MS.gene93801.t1 MTR_5g031000 45.588 68 37 0 10 77 2 69 2.05e-16 74.3
MS.gene93801.t1 MTR_8g033220 35.135 148 88 4 11 158 3 142 2.23e-16 73.9
MS.gene93801.t1 MTR_8g033220 35.135 148 88 4 11 158 3 142 2.47e-16 73.9
MS.gene93801.t1 MTR_7g075870 37.500 112 62 2 11 117 3 111 4.43e-16 72.8
MS.gene93801.t1 MTR_3g084980 57.143 56 24 0 10 65 2 57 8.16e-16 72.8
MS.gene93801.t1 MTR_7g016600 55.357 56 25 0 10 65 2 57 9.57e-16 72.8
MS.gene93801.t1 MTR_6g015975 49.296 71 35 1 10 79 2 72 1.09e-15 72.4
MS.gene93801.t1 MTR_5g046790 34.286 140 74 6 10 146 2 126 1.30e-15 71.6
MS.gene93801.t1 MTR_7g016630 32.143 140 79 4 10 148 2 126 1.37e-15 72.4
MS.gene93801.t1 MTR_8g097090 55.357 56 25 0 10 65 2 57 1.53e-15 72.0
MS.gene93801.t1 MTR_7g075870 55.357 56 25 0 11 66 3 58 1.78e-15 71.2
MS.gene93801.t1 MTR_7g075850 42.391 92 33 2 10 101 2 73 3.32e-15 71.2
MS.gene93801.t1 MTR_4g093030 55.556 54 24 0 10 63 2 55 4.00e-15 69.3
MS.gene93801.t1 MTR_2g045020 35.366 164 88 6 1 159 18 168 8.97e-15 68.9
MS.gene93801.t1 MTR_1g075570 34.426 122 70 2 19 140 1 112 4.58e-14 66.6
MS.gene93801.t1 MTR_4g108720 51.923 52 25 0 10 61 2 53 4.15e-13 66.2
MS.gene93801.t1 MTR_4g036050 38.889 72 43 1 11 81 3 74 6.99e-13 63.5
MS.gene93801.t1 MTR_4g036050 38.889 72 43 1 11 81 3 74 7.13e-13 63.9
MS.gene93801.t1 MTR_4g036050 38.356 73 44 1 10 81 2 74 7.44e-13 63.9
MS.gene93801.t1 MTR_4g036050 38.356 73 44 1 10 81 2 74 8.07e-13 63.5
MS.gene93801.t1 MTR_5g041650 33.607 122 56 3 10 131 39 135 9.99e-13 65.5
MS.gene93801.t1 MTR_1g041615 63.636 44 16 0 23 66 19 62 1.55e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93801.t1 AT5G60440 41.772 158 85 2 6 156 3 160 2.29e-35 125
MS.gene93801.t1 AT1G65360 45.185 135 69 3 6 136 3 136 3.94e-31 112
MS.gene93801.t1 AT2G24840 36.709 158 95 3 8 160 61 218 5.80e-30 110
MS.gene93801.t1 AT4G36590 36.145 166 96 3 6 161 3 168 6.37e-27 102
MS.gene93801.t1 AT1G01530 50.562 89 39 1 6 89 3 91 4.13e-26 100
MS.gene93801.t1 AT2G34440 36.111 144 84 4 10 148 2 142 8.73e-23 89.7
MS.gene93801.t1 AT1G72350 32.680 153 74 3 10 162 43 166 2.84e-22 89.4
MS.gene93801.t1 AT3G66656 46.875 96 50 1 10 105 2 96 6.54e-22 87.4
MS.gene93801.t1 AT3G04100 33.735 166 94 5 6 159 10 171 2.63e-21 86.7
MS.gene93801.t1 AT4G09960 32.298 161 92 4 10 168 3 148 8.75e-21 85.9
MS.gene93801.t1 AT4G09960 32.298 161 92 4 10 168 2 147 9.15e-21 85.9
MS.gene93801.t1 AT4G09960 32.298 161 92 4 10 168 12 157 1.43e-20 85.5
MS.gene93801.t1 AT4G09960 32.298 161 92 4 10 168 28 173 1.85e-20 85.5
MS.gene93801.t1 AT5G10140 44.037 109 54 3 10 117 2 104 2.10e-20 83.2
MS.gene93801.t1 AT4G09960 35.461 141 74 4 10 148 2 127 3.51e-20 84.0
MS.gene93801.t1 AT5G10140 44.037 109 54 3 10 117 2 104 3.80e-20 82.8
MS.gene93801.t1 AT5G10140 44.037 109 54 3 10 117 2 104 4.62e-20 83.2
MS.gene93801.t1 AT5G10140 44.037 109 54 3 10 117 2 104 5.47e-20 82.8
MS.gene93801.t1 AT1G28460 34.132 167 99 4 6 163 4 168 6.90e-20 82.4
MS.gene93801.t1 AT4G09960 32.919 161 91 4 10 168 97 242 9.87e-20 84.7
MS.gene93801.t1 AT5G51870 51.899 79 38 0 6 84 21 99 1.25e-19 82.0
MS.gene93801.t1 AT4G18960 32.558 172 89 5 7 171 15 166 2.61e-19 82.4
MS.gene93801.t1 AT3G54340 55.556 63 28 0 10 72 2 64 2.88e-19 81.6
MS.gene93801.t1 AT2G45660 35.507 138 76 2 11 148 3 127 3.59e-19 79.7
MS.gene93801.t1 AT5G51870 52.703 74 35 0 11 84 3 76 4.89e-19 79.7
MS.gene93801.t1 AT5G51870 52.703 74 35 0 11 84 3 76 5.41e-19 80.5
MS.gene93801.t1 AT2G42830 31.361 169 95 6 7 171 14 165 7.87e-19 80.9
MS.gene93801.t1 AT2G42830 31.361 169 95 6 7 171 14 165 8.82e-19 80.9
MS.gene93801.t1 AT2G45660 35.507 138 76 2 11 148 3 127 1.02e-18 80.1
MS.gene93801.t1 AT5G51870 51.948 77 37 0 8 84 10 86 1.30e-18 80.1
MS.gene93801.t1 AT4G24540 35.294 170 88 5 10 167 2 161 1.31e-18 79.7
MS.gene93801.t1 AT4G22950 34.532 139 75 2 11 148 3 126 1.31e-18 78.6
MS.gene93801.t1 AT1G77980 50.000 70 34 1 10 78 2 71 1.36e-18 81.6
MS.gene93801.t1 AT5G51870 52.703 74 35 0 11 84 3 76 1.69e-18 79.3
MS.gene93801.t1 AT1G77950 50.000 70 34 1 10 78 2 71 1.72e-18 80.1
MS.gene93801.t1 AT1G77950 50.000 70 34 1 10 78 2 71 1.72e-18 80.1
MS.gene93801.t1 AT1G77950 50.000 70 34 1 10 78 2 71 1.72e-18 80.1
MS.gene93801.t1 AT1G77950 50.000 70 34 1 10 78 2 71 1.72e-18 80.1
MS.gene93801.t1 AT1G29962 31.977 172 99 5 6 163 4 171 1.85e-18 78.6
MS.gene93801.t1 AT3G57230 42.169 83 46 1 10 90 2 84 2.00e-18 77.4
MS.gene93801.t1 AT2G45650 43.878 98 33 1 10 107 2 77 2.68e-18 79.7
MS.gene93801.t1 AT4G22950 34.532 139 75 2 11 148 3 126 4.03e-18 78.6
MS.gene93801.t1 AT4G22950 34.532 139 75 2 11 148 3 126 4.03e-18 78.6
MS.gene93801.t1 AT1G22130 50.000 70 34 1 10 78 2 71 4.24e-18 80.1
MS.gene93801.t1 AT4G37940 45.946 74 40 0 10 83 2 75 5.16e-18 78.2
MS.gene93801.t1 AT4G37940 45.946 74 40 0 10 83 2 75 5.63e-18 78.2
MS.gene93801.t1 AT2G22540 53.731 67 31 0 11 77 3 69 6.16e-18 78.6
MS.gene93801.t1 AT2G22540 53.731 67 31 0 11 77 3 69 6.16e-18 78.6
MS.gene93801.t1 AT5G51860 36.806 144 75 5 11 152 3 132 7.20e-18 77.4
MS.gene93801.t1 AT3G57230 42.169 83 46 1 10 90 2 84 7.20e-18 78.2
MS.gene93801.t1 AT3G57230 42.169 83 46 1 10 90 2 84 7.20e-18 78.2
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 8.06e-18 76.3
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 8.06e-18 76.3
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 8.06e-18 76.3
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 8.06e-18 76.3
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 8.06e-18 76.3
MS.gene93801.t1 AT3G58780 30.460 174 100 6 2 171 9 165 8.49e-18 78.2
MS.gene93801.t1 AT5G51860 36.806 144 75 5 11 152 3 132 8.60e-18 77.4
MS.gene93801.t1 AT2G22630 37.069 116 68 2 10 122 2 115 9.32e-18 77.8
MS.gene93801.t1 AT2G22630 37.069 116 68 2 10 122 2 115 9.32e-18 77.8
MS.gene93801.t1 AT4G37940 45.946 74 40 0 10 83 2 75 9.63e-18 76.6
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 1.00e-17 75.9
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 1.00e-17 75.9
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 1.00e-17 75.9
MS.gene93801.t1 AT3G58780 30.460 174 100 6 2 171 15 171 1.04e-17 78.2
MS.gene93801.t1 AT5G62165 46.753 77 41 0 11 87 3 79 1.18e-17 74.3
MS.gene93801.t1 AT5G13790 54.412 68 31 0 10 77 2 69 1.21e-17 78.2
MS.gene93801.t1 AT5G13790 54.412 68 31 0 10 77 2 69 1.28e-17 78.2
MS.gene93801.t1 AT3G58780 37.097 124 62 5 2 121 9 120 1.66e-17 77.8
MS.gene93801.t1 AT2G22540 64.151 53 19 0 11 63 3 55 1.75e-17 77.0
MS.gene93801.t1 AT3G57390 34.194 155 67 4 10 161 2 124 1.78e-17 77.0
MS.gene93801.t1 AT5G23260 28.834 163 101 3 4 162 12 163 2.22e-17 77.4
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 3.72e-17 75.5
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 3.72e-17 75.5
MS.gene93801.t1 AT3G57390 34.416 154 66 4 10 160 2 123 3.77e-17 76.6
MS.gene93801.t1 AT1G28450 32.530 166 98 5 6 159 4 167 3.82e-17 75.1
MS.gene93801.t1 AT5G23260 46.154 78 40 1 4 79 12 89 3.97e-17 76.6
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 5.23e-17 75.5
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 5.23e-17 75.5
MS.gene93801.t1 AT5G62165 38.938 113 59 2 11 117 3 111 5.23e-17 75.5
MS.gene93801.t1 AT5G23260 29.487 156 95 3 10 161 2 146 1.01e-16 75.1
MS.gene93801.t1 AT5G23260 29.299 157 96 3 10 162 2 147 1.02e-16 75.5
MS.gene93801.t1 AT3G58780 30.000 170 99 5 2 171 9 158 1.08e-16 75.1
MS.gene93801.t1 AT3G58780 50.769 65 32 0 2 66 9 73 1.32e-16 75.5
MS.gene93801.t1 AT3G30260 30.723 166 95 5 10 171 2 151 1.61e-16 74.7
MS.gene93801.t1 AT4G11880 53.333 60 28 0 11 70 3 62 2.85e-16 72.8
MS.gene93801.t1 AT4G11880 53.333 60 28 0 11 70 3 62 2.85e-16 72.8
MS.gene93801.t1 AT5G20240 48.611 72 35 1 10 79 2 73 3.30e-16 72.0
MS.gene93801.t1 AT2G14210 39.604 101 40 2 10 110 2 81 4.61e-16 73.2
MS.gene93801.t1 AT5G15800 41.489 94 51 2 10 99 2 95 6.16e-16 73.2
MS.gene93801.t1 AT1G69120 52.632 57 27 0 10 66 2 58 6.29e-16 72.8
MS.gene93801.t1 AT2G14210 40.594 101 39 2 10 110 2 81 6.65e-16 72.8
MS.gene93801.t1 AT5G20240 48.611 72 35 1 10 79 2 73 6.79e-16 72.4
MS.gene93801.t1 AT4G11880 58.182 55 23 0 11 65 3 57 7.27e-16 72.4
MS.gene93801.t1 AT4G11880 58.182 55 23 0 11 65 3 57 7.27e-16 72.4
MS.gene93801.t1 AT5G60910 36.879 141 73 6 10 148 2 128 8.40e-16 72.8
MS.gene93801.t1 AT1G26310 54.386 57 26 0 10 66 2 58 1.03e-15 72.8
MS.gene93801.t1 AT3G02310 41.489 94 51 2 10 99 2 95 1.13e-15 71.6
MS.gene93801.t1 AT2G03710 53.571 56 26 0 10 65 2 57 1.27e-15 71.2
MS.gene93801.t1 AT5G15800 41.489 94 51 2 10 99 2 95 1.32e-15 72.4
MS.gene93801.t1 AT1G24260 55.357 56 25 0 10 65 2 57 1.50e-15 72.0
MS.gene93801.t1 AT1G24260 55.357 56 25 0 10 65 2 57 1.60e-15 72.0
MS.gene93801.t1 AT1G69120 49.231 65 30 1 10 74 2 63 1.62e-15 72.0
MS.gene93801.t1 AT1G24260 55.357 56 25 0 10 65 2 57 1.66e-15 72.0
MS.gene93801.t1 AT2G03710 53.571 56 26 0 10 65 2 57 1.91e-15 72.0
MS.gene93801.t1 AT2G03710 53.571 56 26 0 10 65 2 57 1.93e-15 72.0
MS.gene93801.t1 AT1G71692 41.975 81 46 1 11 90 3 83 2.39e-15 70.9
MS.gene93801.t1 AT3G61120 44.286 70 39 0 10 79 2 71 2.62e-15 71.2
MS.gene93801.t1 AT3G02310 55.357 56 25 0 10 65 2 57 3.37e-15 71.2
MS.gene93801.t1 AT5G65070 43.478 69 38 1 10 77 2 70 5.98e-15 68.6
MS.gene93801.t1 AT5G65050 43.590 78 42 2 10 85 2 79 6.73e-15 68.9
MS.gene93801.t1 AT5G65060 31.325 166 80 5 10 168 2 140 7.70e-15 69.3
MS.gene93801.t1 AT5G65060 31.325 166 80 5 10 168 2 140 1.12e-14 68.9
MS.gene93801.t1 AT4G37435 53.571 56 26 0 10 65 2 57 1.33e-14 68.6
MS.gene93801.t1 AT5G65070 43.478 69 38 1 10 77 2 70 1.44e-14 68.6
MS.gene93801.t1 AT5G65050 44.928 69 37 1 10 77 2 70 1.61e-14 68.2
MS.gene93801.t1 AT5G65050 44.928 69 37 1 10 77 2 70 1.66e-14 68.2
MS.gene93801.t1 AT5G65050 44.928 69 37 1 10 77 2 70 1.72e-14 68.6
MS.gene93801.t1 AT1G47760 47.458 59 31 0 10 68 2 60 2.69e-14 67.8
MS.gene93801.t1 AT5G65070 43.478 69 38 1 10 77 2 70 3.10e-14 67.8
MS.gene93801.t1 AT5G65070 43.478 69 38 1 10 77 2 70 3.31e-14 68.2
MS.gene93801.t1 AT5G65060 42.029 69 39 1 10 77 2 70 5.87e-14 66.6
MS.gene93801.t1 AT5G65070 47.368 57 30 0 10 66 2 58 6.95e-14 67.4
MS.gene93801.t1 AT1G18750 46.429 56 30 0 10 65 2 57 4.05e-13 66.6
MS.gene93801.t1 AT1G69540 25.967 181 112 6 10 169 2 181 4.51e-13 66.2
MS.gene93801.t1 AT1G18750 46.429 56 30 0 10 65 2 57 5.06e-13 66.2
MS.gene93801.t1 AT1G18750 46.429 56 30 0 10 65 2 57 5.26e-13 66.2
MS.gene93801.t1 AT1G69540 25.967 181 112 6 10 169 2 181 7.09e-13 65.9
MS.gene93801.t1 AT5G38620 27.108 166 93 6 11 169 6 150 1.29e-12 65.1
MS.gene93801.t1 AT2G03060 46.552 58 30 1 10 66 2 59 2.38e-12 64.3
MS.gene93801.t1 AT2G03060 46.552 58 30 1 10 66 2 59 2.38e-12 64.3
MS.gene93801.t1 AT2G03060 46.552 58 30 1 10 66 2 59 2.38e-12 64.3
MS.gene93801.t1 AT2G03060 46.552 58 30 1 10 66 2 59 2.62e-12 64.3
MS.gene93801.t1 AT5G49490 36.709 79 46 1 6 80 41 119 3.80e-12 63.2
MS.gene93801.t1 AT5G65080 41.667 60 35 0 4 63 3 62 5.51e-12 61.6
MS.gene93801.t1 AT5G65080 41.667 60 35 0 4 63 3 62 5.70e-12 61.6
MS.gene93801.t1 AT5G49420 34.177 79 48 1 6 80 3 81 1.84e-11 61.6
MS.gene93801.t1 AT1G31140 41.558 77 40 2 16 87 8 84 1.91e-11 60.5
MS.gene93801.t1 AT1G17310 32.680 153 71 3 10 162 48 168 1.97e-11 60.5
MS.gene93801.t1 AT1G31140 41.558 77 40 2 16 87 8 84 2.10e-11 60.5
MS.gene93801.t1 AT1G17310 32.680 153 71 3 10 162 59 179 2.21e-11 60.5
MS.gene93801.t1 AT1G77080 33.728 169 78 6 10 171 2 143 9.88e-11 57.8

Find 23 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTGATGTTGAAATTT+TGG 0.117908 1.2:+78686513 MS.gene93801:CDS
TGAAGAGCTTGAACAATTTA+TGG 0.162069 1.2:+78686591 MS.gene93801:CDS
TAAAGAGCAAGCTTCTTAAA+AGG 0.200612 1.2:+78686629 MS.gene93801:CDS
TTCCTTTGATATAGCTATTG+AGG 0.389305 1.2:-78686384 None:intergenic
GGCATTAAAGATGTTAGAGT+TGG 0.397789 1.2:+78686480 MS.gene93801:CDS
TTTGAGGATTCAAAATCAAC+AGG 0.408590 1.2:+78686415 MS.gene93801:CDS
TTGAGGATTGTATCGGTGTT+TGG 0.411283 1.2:-78686367 None:intergenic
TGAGAAAGTGACTTGTTTGT+TGG 0.422775 1.2:-78686233 None:intergenic
CAAAGGAACTACGGAATTTG+AGG 0.429778 1.2:+78686399 MS.gene93801:CDS
GCTGACAAACTATTCTGCTT+TGG 0.441818 1.2:+78686340 MS.gene93801:CDS
AAAGAGCAAGCTTCTTAAAA+GGG 0.470494 1.2:+78686630 MS.gene93801:CDS
AAGCAGAATAGTTTGTCAGC+AGG 0.500375 1.2:-78686337 None:intergenic
AAAGTACAATAGACAATATG+AGG 0.506411 1.2:+78686456 MS.gene93801:CDS
AGCAGAATAGTTTGTCAGCA+GGG 0.519077 1.2:-78686336 None:intergenic
AACCAAAGAAAGAAAACCAC+AGG 0.525657 1.2:+78686172 MS.gene93801:CDS
TAGCTATATCAAAGGAACTA+CGG 0.554845 1.2:+78686390 MS.gene93801:CDS
TTCAATCTTCTTGCGCCCTG+TGG 0.560440 1.2:-78686188 None:intergenic
ATCCTCAATAGCTATATCAA+AGG 0.564876 1.2:+78686382 MS.gene93801:CDS
GCAGAATAGTTTGTCAGCAG+GGG 0.610124 1.2:-78686335 None:intergenic
ACTTTCTCAAAGAGAAGACA+AGG 0.611669 1.2:+78686247 MS.gene93801:CDS
ATAGCTATTGAGGATTGTAT+CGG 0.621531 1.2:-78686374 None:intergenic
GTACAATAGACAATATGAGG+AGG 0.673698 1.2:+78686459 MS.gene93801:CDS
ACCAAAGAAAGAAAACCACA+GGG 0.726086 1.2:+78686173 MS.gene93801:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAGTACAATAGACAATATG+AGG + chr1.2:78686456-78686475 MS.gene93801:CDS 25.0%
AAAGAGCAAGCTTCTTAAAA+GGG + chr1.2:78686630-78686649 MS.gene93801:CDS 30.0%
ATAGCTATTGAGGATTGTAT+CGG - chr1.2:78686377-78686396 None:intergenic 30.0%
ATCACCTTTCTTCAAAAACT+TGG - chr1.2:78686539-78686558 None:intergenic 30.0%
ATCCTCAATAGCTATATCAA+AGG + chr1.2:78686382-78686401 MS.gene93801:CDS 30.0%
TAAAGAGCAAGCTTCTTAAA+AGG + chr1.2:78686629-78686648 MS.gene93801:CDS 30.0%
TAGCTATATCAAAGGAACTA+CGG + chr1.2:78686390-78686409 MS.gene93801:CDS 30.0%
TGAAGAGCTTGAACAATTTA+TGG + chr1.2:78686591-78686610 MS.gene93801:CDS 30.0%
TTCCTTTGATATAGCTATTG+AGG - chr1.2:78686387-78686406 None:intergenic 30.0%
TTTGAGGATTCAAAATCAAC+AGG + chr1.2:78686415-78686434 MS.gene93801:CDS 30.0%
! ACTAGCTGATGTTGAAATTT+TGG + chr1.2:78686513-78686532 MS.gene93801:CDS 30.0%
! TTGTCTATTGTACTTTTCGT+AGG - chr1.2:78686452-78686471 None:intergenic 30.0%
!! AGTTTTTGAAGAAAGGTGAT+TGG + chr1.2:78686539-78686558 MS.gene93801:CDS 30.0%
AACCAAAGAAAGAAAACCAC+AGG + chr1.2:78686172-78686191 MS.gene93801:CDS 35.0%
ACCAAAGAAAGAAAACCACA+GGG + chr1.2:78686173-78686192 MS.gene93801:CDS 35.0%
ACTTTCTCAAAGAGAAGACA+AGG + chr1.2:78686247-78686266 MS.gene93801:CDS 35.0%
GGCATTAAAGATGTTAGAGT+TGG + chr1.2:78686480-78686499 MS.gene93801:CDS 35.0%
GTACAATAGACAATATGAGG+AGG + chr1.2:78686459-78686478 MS.gene93801:CDS 35.0%
!! TGAGAAAGTGACTTGTTTGT+TGG - chr1.2:78686236-78686255 None:intergenic 35.0%
!! TTGGCCAAGTTTTTGAAGAA+AGG + chr1.2:78686532-78686551 MS.gene93801:CDS 35.0%
!! TTTTGAAGAAAGGTGATTGG+TGG + chr1.2:78686542-78686561 MS.gene93801:CDS 35.0%
CAAAGGAACTACGGAATTTG+AGG + chr1.2:78686399-78686418 MS.gene93801:CDS 40.0%
GCTGACAAACTATTCTGCTT+TGG + chr1.2:78686340-78686359 MS.gene93801:CDS 40.0%
! AAGCAGAATAGTTTGTCAGC+AGG - chr1.2:78686340-78686359 None:intergenic 40.0%
! AGCAGAATAGTTTGTCAGCA+GGG - chr1.2:78686339-78686358 None:intergenic 40.0%
! TTGAGGATTGTATCGGTGTT+TGG - chr1.2:78686370-78686389 None:intergenic 40.0%
! GCAGAATAGTTTGTCAGCAG+GGG - chr1.2:78686338-78686357 None:intergenic 45.0%
! GCCCTGTGGTTTTCTTTCTT+TGG - chr1.2:78686177-78686196 None:intergenic 45.0%
TTCAATCTTCTTGCGCCCTG+TGG - chr1.2:78686191-78686210 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78686166 78686681 78686166 ID=MS.gene93801
chr1.2 mRNA 78686166 78686681 78686166 ID=MS.gene93801.t1;Parent=MS.gene93801
chr1.2 exon 78686166 78686681 78686166 ID=MS.gene93801.t1.exon1;Parent=MS.gene93801.t1
chr1.2 CDS 78686166 78686681 78686166 ID=cds.MS.gene93801.t1;Parent=MS.gene93801.t1
Gene Sequence

>MS.gene93801

ATGGATAACCAAAGAAAGAAAACCACAGGGCGCAAGAAGATTGAAATCAAAAAGCTTGACAAAGAATCCAACAAACAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATTGTGTTCTCCCCTGCTGACAAACTATTCTGCTTTGGTCAACCAAACACCGATACAATCCTCAATAGCTATATCAAAGGAACTACGGAATTTGAGGATTCAAAATCAACAGGAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAGAAACTAGCTGATGTTGAAATTTTGGCCAAGTTTTTGAAGAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGGTGTCTATTTTTGAGTTAAAGAGCAAGCTTCTTAAAAGGGCTGATGAACTTATGATGTCTGTCATATAG
Protein sequence

>MS.gene93801.t1

MDNQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTDTILNSYIKGTTEFEDSKSTGNSSTYEKYNRQYEEALKMLELEKKKLADVEILAKFLKKGDWWNDSIDDMSSEELEQFMVSIFELKSKLLKRADELMMSVI