Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93879.t1 | RHN51853.1 | 41.6 | 361 | 191 | 4 | 1 | 344 | 143 | 500 | 2.30E-80 | 309.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93879.t1 | A0A396HGY8 | 41.6 | 361 | 191 | 4 | 1 | 344 | 143 | 500 | 1.6e-80 | 309.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene93879.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93879.t1 | MTR_0091s0080 | 37.047 | 359 | 180 | 5 | 1 | 344 | 145 | 472 | 1.41e-81 | 256 |
| MS.gene93879.t1 | MTR_0091s0090 | 42.512 | 207 | 118 | 1 | 130 | 336 | 4 | 209 | 1.85e-57 | 187 |
| MS.gene93879.t1 | MTR_1g052720 | 34.432 | 273 | 161 | 4 | 79 | 337 | 34 | 302 | 6.39e-50 | 169 |
| MS.gene93879.t1 | MTR_6g465600 | 36.290 | 248 | 143 | 4 | 71 | 304 | 28 | 274 | 1.15e-46 | 161 |
| MS.gene93879.t1 | MTR_0246s0040 | 34.091 | 264 | 156 | 7 | 88 | 350 | 72 | 318 | 2.26e-36 | 134 |
| MS.gene93879.t1 | MTR_1g105765 | 29.767 | 215 | 139 | 2 | 85 | 288 | 38 | 251 | 1.28e-27 | 109 |
| MS.gene93879.t1 | MTR_1g105780 | 29.302 | 215 | 140 | 2 | 85 | 288 | 38 | 251 | 2.27e-27 | 108 |
| MS.gene93879.t1 | MTR_7g110090 | 27.490 | 251 | 165 | 5 | 71 | 307 | 22 | 269 | 3.87e-25 | 102 |
| MS.gene93879.t1 | MTR_1g023840 | 40.594 | 101 | 60 | 0 | 205 | 305 | 10 | 110 | 8.19e-23 | 93.2 |
| MS.gene93879.t1 | MTR_4g032580 | 27.881 | 269 | 180 | 5 | 48 | 303 | 28 | 295 | 1.51e-22 | 96.3 |
| MS.gene93879.t1 | MTR_7g050355 | 26.022 | 269 | 133 | 3 | 71 | 338 | 28 | 231 | 1.57e-22 | 99.0 |
| MS.gene93879.t1 | MTR_4g032560 | 27.881 | 269 | 180 | 5 | 48 | 303 | 28 | 295 | 1.58e-22 | 96.3 |
| MS.gene93879.t1 | MTR_3g070250 | 28.512 | 242 | 151 | 6 | 70 | 292 | 26 | 264 | 8.12e-21 | 91.3 |
| MS.gene93879.t1 | MTR_4g062370 | 27.165 | 254 | 163 | 6 | 44 | 285 | 8 | 251 | 8.25e-21 | 94.4 |
| MS.gene93879.t1 | MTR_1g084880 | 27.632 | 228 | 144 | 3 | 85 | 294 | 37 | 261 | 2.17e-19 | 87.0 |
| MS.gene93879.t1 | MTR_3g048970 | 27.193 | 228 | 145 | 3 | 85 | 294 | 37 | 261 | 2.28e-19 | 87.0 |
| MS.gene93879.t1 | MTR_2g038740 | 27.969 | 261 | 156 | 6 | 85 | 316 | 37 | 294 | 1.78e-18 | 87.0 |
| MS.gene93879.t1 | MTR_1g047540 | 27.530 | 247 | 155 | 8 | 71 | 307 | 22 | 254 | 7.29e-18 | 84.7 |
| MS.gene93879.t1 | MTR_8g064930 | 67.347 | 49 | 16 | 0 | 93 | 141 | 2 | 50 | 2.25e-17 | 75.5 |
| MS.gene93879.t1 | MTR_2g100360 | 25.877 | 228 | 148 | 4 | 85 | 294 | 37 | 261 | 1.10e-16 | 79.3 |
| MS.gene93879.t1 | MTR_1g087870 | 25.114 | 219 | 147 | 4 | 102 | 304 | 2 | 219 | 3.27e-16 | 77.8 |
| MS.gene93879.t1 | MTR_3g085990 | 26.432 | 227 | 139 | 6 | 69 | 294 | 21 | 220 | 4.95e-16 | 77.0 |
| MS.gene93879.t1 | MTR_3g452180 | 25.824 | 182 | 119 | 4 | 139 | 307 | 7 | 185 | 2.90e-14 | 70.9 |
| MS.gene93879.t1 | MTR_4g117740 | 27.815 | 151 | 91 | 2 | 102 | 252 | 65 | 197 | 3.60e-14 | 70.9 |
| MS.gene93879.t1 | MTR_6g033605 | 32.927 | 82 | 54 | 1 | 228 | 308 | 30 | 111 | 5.40e-13 | 65.1 |
| MS.gene93879.t1 | MTR_5g066660 | 26.484 | 219 | 140 | 5 | 85 | 301 | 37 | 236 | 5.48e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 103 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCTGTGGCAAGGATTTC+TGG | 0.139608 | 5.3:+65952139 | None:intergenic |
| CAATCCAGCCTTGTTTCTTA+TGG | 0.243933 | 5.3:+65952422 | None:intergenic |
| ATCCATGGGTGCAGTGTATT+GGG | 0.290852 | 5.3:+65951914 | None:intergenic |
| ACAAATGCAGATTTGATTAG+AGG | 0.328195 | 5.3:-65953376 | MS.gene93879:CDS |
| CCGAGGTTCATTACTTCATC+AGG | 0.337428 | 5.3:-65952360 | MS.gene93879:CDS |
| GATATATCGGATAATGGATA+TGG | 0.364913 | 5.3:+65952393 | None:intergenic |
| CCTACCACACTTACGATTGT+TGG | 0.366401 | 5.3:-65952117 | MS.gene93879:CDS |
| ACCTCTGCGATGTGCAAATC+AGG | 0.368835 | 5.3:+65952010 | None:intergenic |
| ACATCGCAGAGGTTGGTTGC+AGG | 0.375369 | 5.3:-65952000 | MS.gene93879:CDS |
| ACAACAATGATATTGTTGTT+TGG | 0.386359 | 5.3:+65952573 | None:intergenic |
| GATATTTATAACATTGTAGA+TGG | 0.391221 | 5.3:-65952492 | MS.gene93879:CDS |
| GACTTCGTCTGATGTCCTCT+CGG | 0.399084 | 5.3:-65952292 | MS.gene93879:CDS |
| TATCCATGGGTGCAGTGTAT+TGG | 0.399336 | 5.3:+65951913 | None:intergenic |
| ACTTCAGACAAGGCTGGTCT+AGG | 0.399428 | 5.3:-65952521 | MS.gene93879:CDS |
| GCAAGGGATATATCGGATAA+TGG | 0.403725 | 5.3:+65952387 | None:intergenic |
| ATGCTATGATTGGTGGTGAT+TGG | 0.409098 | 5.3:-65952035 | MS.gene93879:CDS |
| CATAAGAAACAAGGCTGGAT+TGG | 0.419848 | 5.3:-65952421 | MS.gene93879:CDS |
| AACCAGACTTTGCCGTGGTA+TGG | 0.440028 | 5.3:-65952168 | MS.gene93879:intron |
| GTGTACAATTGAAGGTGATT+GGG | 0.443885 | 5.3:-65953509 | MS.gene93879:CDS |
| AAACCTATGGTCAGCGGCAG+TGG | 0.455398 | 5.3:-65951883 | MS.gene93879:CDS |
| ACTCCTATGTGTACAATTGA+AGG | 0.457401 | 5.3:-65953517 | None:intergenic |
| CGGCAACGCAAGGGATATAT+CGG | 0.461190 | 5.3:+65952380 | None:intergenic |
| GACAAAGATAACACAGTCCT+TGG | 0.465488 | 5.3:-65951949 | MS.gene93879:CDS |
| TGTGTACAATTGAAGGTGAT+TGG | 0.473160 | 5.3:-65953510 | MS.gene93879:CDS |
| TTCGATAGACCTTGCGGTCA+CGG | 0.478744 | 5.3:-65953449 | MS.gene93879:CDS |
| CTGTGCGAAGGGACCTGTCT+CGG | 0.479542 | 5.3:-65953178 | MS.gene93879:CDS |
| TAGGTTTCACATAGTATCCA+TGG | 0.490660 | 5.3:+65951899 | None:intergenic |
| ATGGTCATGAGTAGTAGATT+AGG | 0.500878 | 5.3:+65952441 | None:intergenic |
| TGGGTCTATCTGAAATATGC+GGG | 0.502250 | 5.3:-65952465 | MS.gene93879:CDS |
| TTGGTCCGAACGGCTGTACA+TGG | 0.502745 | 5.3:-65952098 | MS.gene93879:CDS |
| GAAGGGACCTGTCTCGGTTG+AGG | 0.505460 | 5.3:-65953172 | MS.gene93879:CDS |
| GCTTCTATATTCTGTTTCCA+AGG | 0.505945 | 5.3:-65953322 | MS.gene93879:intron |
| TCTGCATTTGTAGACGGCAC+AGG | 0.506847 | 5.3:+65953388 | None:intergenic |
| TCACCACCAATCATAGCATA+AGG | 0.511917 | 5.3:+65952039 | None:intergenic |
| ACTTCGTCTGATGTCCTCTC+GGG | 0.511997 | 5.3:-65952291 | MS.gene93879:CDS |
| CATCTCCATGTACAGCCGTT+CGG | 0.512529 | 5.3:+65952093 | None:intergenic |
| GAGTATGCTGGAACAGATGT+CGG | 0.514049 | 5.3:-65951812 | MS.gene93879:CDS |
| AATATGCCTTATGCTATGAT+TGG | 0.515256 | 5.3:-65952045 | MS.gene93879:CDS |
| GATAAGTCCTCAACCGAGAC+AGG | 0.525131 | 5.3:+65953165 | None:intergenic |
| CGACCACTGCCGCTGACCAT+AGG | 0.527761 | 5.3:+65951880 | None:intergenic |
| ACCCCAATACACTGCACCCA+TGG | 0.533195 | 5.3:-65951916 | MS.gene93879:CDS |
| CAGTGGTCGATATGTGTACC+AGG | 0.539166 | 5.3:-65951866 | MS.gene93879:CDS |
| TAATGAACCTCGGCAACGCA+AGG | 0.541750 | 5.3:+65952370 | None:intergenic |
| TGATGTCCTCTCGGGCACTT+TGG | 0.543138 | 5.3:-65952283 | MS.gene93879:intron |
| TTGCAAGGCGAAGAGTATGC+TGG | 0.545573 | 5.3:-65951824 | MS.gene93879:CDS |
| ATAACATTGTAGATGGTGCA+TGG | 0.547247 | 5.3:-65952485 | MS.gene93879:CDS |
| CGAGGTTCATTACTTCATCA+GGG | 0.547766 | 5.3:-65952359 | MS.gene93879:CDS |
| CATATTATTTGCAACAGCGA+AGG | 0.553325 | 5.3:+65952062 | None:intergenic |
| CTTCAGACAAGGCTGGTCTA+GGG | 0.553757 | 5.3:-65952520 | MS.gene93879:CDS |
| AACGACCTTCGACAAACCTA+CGG | 0.556786 | 5.3:+65953470 | None:intergenic |
| AGTATGCTGGAACAGATGTC+GGG | 0.557360 | 5.3:-65951811 | MS.gene93879:CDS |
| CTTACGATTGTTGGTCCGAA+CGG | 0.558198 | 5.3:-65952108 | MS.gene93879:CDS |
| GATTTGCACATCGCAGAGGT+TGG | 0.560790 | 5.3:-65952007 | MS.gene93879:CDS |
| GGACTGTGTTATCTTTGTCA+TGG | 0.561082 | 5.3:+65951953 | None:intergenic |
| TCTTCTCCTCCGTGACCGCA+AGG | 0.561112 | 5.3:+65953440 | None:intergenic |
| TGGATACTATGTGAAACCTA+TGG | 0.563204 | 5.3:-65951896 | MS.gene93879:CDS |
| TCAGACTGCAATATGAACCT+TGG | 0.563823 | 5.3:+65953346 | None:intergenic |
| TGCAGTGTATTGGGGTATGT+CGG | 0.565836 | 5.3:+65951923 | None:intergenic |
| CTGCATTTGTAGACGGCACA+GGG | 0.566431 | 5.3:+65953389 | None:intergenic |
| TGATTAGAGGCATTGATCCA+AGG | 0.567311 | 5.3:-65953363 | MS.gene93879:CDS |
| ATATATCCCTTGCGTTGCCG+AGG | 0.568869 | 5.3:-65952377 | MS.gene93879:CDS |
| TGTGGTAGGTTTCTGTGGCA+AGG | 0.569531 | 5.3:+65952131 | None:intergenic |
| TAACATTGTAGATGGTGCAT+GGG | 0.570614 | 5.3:-65952484 | MS.gene93879:CDS |
| ACAAGGCTGGTCTAGGGTGA+AGG | 0.576887 | 5.3:-65952514 | MS.gene93879:CDS |
| CCAACAATCGTAAGTGTGGT+AGG | 0.580385 | 5.3:+65952117 | None:intergenic |
| CGAGACAGGTCCCTTCGCAC+AGG | 0.583465 | 5.3:+65953179 | None:intergenic |
| ACGACCTTCGACAAACCTAC+GGG | 0.584033 | 5.3:+65953471 | None:intergenic |
| AGGTCTACTTCAGACAAGGC+TGG | 0.585540 | 5.3:-65952527 | MS.gene93879:CDS |
| ATCAAATCTGCATTTGTAGA+CGG | 0.590289 | 5.3:+65953382 | None:intergenic |
| TCACTATCTCAAATATTGCA+AGG | 0.596203 | 5.3:-65951839 | MS.gene93879:CDS |
| ATGACCATAAGAAACAAGGC+TGG | 0.597597 | 5.3:-65952426 | MS.gene93879:CDS |
| CGACCTCGATCCTGTGCGAA+GGG | 0.601460 | 5.3:-65953189 | MS.gene93879:CDS |
| ATGCCTTATGCTATGATTGG+TGG | 0.601798 | 5.3:-65952042 | MS.gene93879:CDS |
| TTGGGGTATGTCGGAAACCA+AGG | 0.606539 | 5.3:+65951932 | None:intergenic |
| AATGAACCTCGGCAACGCAA+GGG | 0.607154 | 5.3:+65952371 | None:intergenic |
| TGTACAATTGAAGGTGATTG+GGG | 0.612279 | 5.3:-65953508 | MS.gene93879:CDS |
| GTAAGTGTGGTAGGTTTCTG+TGG | 0.617237 | 5.3:+65952126 | None:intergenic |
| AGGTTTCACATAGTATCCAT+GGG | 0.622147 | 5.3:+65951900 | None:intergenic |
| CAACAGCGAACTTAACTGCA+TGG | 0.624703 | 5.3:+65951977 | None:intergenic |
| TCCATGGGTGCAGTGTATTG+GGG | 0.627336 | 5.3:+65951915 | None:intergenic |
| ACCTGATTTGCACATCGCAG+AGG | 0.634639 | 5.3:-65952011 | MS.gene93879:CDS |
| GGACAATATGTAAGGCCCGT+AGG | 0.636455 | 5.3:-65953486 | MS.gene93879:CDS |
| TCACCTTCAATTGTACACAT+AGG | 0.636668 | 5.3:+65953514 | None:intergenic |
| ATGGGTCTATCTGAAATATG+CGG | 0.636801 | 5.3:-65952466 | MS.gene93879:CDS |
| ACGACCTCGATCCTGTGCGA+AGG | 0.639634 | 5.3:-65953190 | MS.gene93879:CDS |
| GGTCCCTTCGCACAGGATCG+AGG | 0.647508 | 5.3:+65953186 | None:intergenic |
| TTCTGGCAGAAGCCATACCA+CGG | 0.648051 | 5.3:+65952156 | None:intergenic |
| GGCAAGGTCTACTTCAGACA+AGG | 0.649008 | 5.3:-65952531 | MS.gene93879:CDS |
| CCTGATGAAGTAATGAACCT+CGG | 0.649312 | 5.3:+65952360 | None:intergenic |
| TTATTTAGCAGTTAAAGGCG+AGG | 0.655685 | 5.3:-65952659 | MS.gene93879:intron |
| GAGGTTCATTACTTCATCAG+GGG | 0.659487 | 5.3:-65952358 | MS.gene93879:CDS |
| ACTCATGACCATAAGAAACA+AGG | 0.663177 | 5.3:-65952430 | MS.gene93879:CDS |
| TCAAAATCTTGACAGATGTG+CGG | 0.663839 | 5.3:+65952313 | None:intergenic |
| CGGACCAACAATCGTAAGTG+TGG | 0.667344 | 5.3:+65952113 | None:intergenic |
| ATTTGAGATAGTGATTGACC+TGG | 0.673697 | 5.3:+65951848 | None:intergenic |
| GGGTCTATCTGAAATATGCG+GGG | 0.673953 | 5.3:-65952464 | MS.gene93879:CDS |
| TATATACCAAAGTGCCCGAG+AGG | 0.678235 | 5.3:+65952277 | None:intergenic |
| AAGGCCCGTAGGTTTGTCGA+AGG | 0.678246 | 5.3:-65953475 | MS.gene93879:CDS |
| TGTTTAACCAGACTTTGCCG+TGG | 0.679547 | 5.3:-65952173 | MS.gene93879:intron |
| AGGTCGTTCGATAGACCTTG+CGG | 0.706168 | 5.3:-65953455 | MS.gene93879:CDS |
| TATGTGAAACCTATGGTCAG+CGG | 0.713139 | 5.3:-65951889 | MS.gene93879:CDS |
| GATAGACCTTGCGGTCACGG+AGG | 0.760484 | 5.3:-65953446 | MS.gene93879:CDS |
| GTACAATTGAAGGTGATTGG+GGG | 0.819509 | 5.3:-65953507 | MS.gene93879:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACCATATAAATTCAT+TGG | + | chr5.3:65952092-65952111 | None:intergenic | 15.0% |
| !! | GGTTAATATAATTAGATATT+TGG | - | chr5.3:65953077-65953096 | MS.gene93879:intron | 15.0% |
| !! | TACATTCTAATTTGAATATA+TGG | - | chr5.3:65952332-65952351 | MS.gene93879:CDS | 15.0% |
| !!! | TATGTTAACATTTTCTATTA+TGG | - | chr5.3:65952607-65952626 | MS.gene93879:CDS | 15.0% |
| !! | ATGTTAACATAAATTTATGC+CGG | + | chr5.3:65952598-65952617 | None:intergenic | 20.0% |
| !! | GATATTTATAACATTGTAGA+TGG | - | chr5.3:65952826-65952845 | MS.gene93879:intron | 20.0% |
| !!! | AACTAACGTACAAATTTTTT+CGG | + | chr5.3:65952497-65952516 | None:intergenic | 20.0% |
| ! | ATTTCGTTCATTCGATTATA+AGG | - | chr5.3:65953102-65953121 | MS.gene93879:intron | 25.0% |
| ! | GTTTCCTATCTAATATCATA+AGG | - | chr5.3:65952629-65952648 | MS.gene93879:CDS | 25.0% |
| !! | AAATTTTCACGACAACAATA+AGG | - | chr5.3:65952305-65952324 | MS.gene93879:CDS | 25.0% |
| !! | ACAACAATGATATTGTTGTT+TGG | + | chr5.3:65952748-65952767 | None:intergenic | 25.0% |
| !! | GGTATATAATTTGCACTAAT+TGG | - | chr5.3:65953056-65953075 | MS.gene93879:intron | 25.0% |
| !! | TATATGTTGTTTATTCTGTC+CGG | - | chr5.3:65952046-65952065 | MS.gene93879:CDS | 25.0% |
| AACAACATATACTTCAGTTC+AGG | + | chr5.3:65952037-65952056 | None:intergenic | 30.0% | |
| AAGGTTATCTTACTGTTTGT+TGG | - | chr5.3:65953121-65953140 | MS.gene93879:intron | 30.0% | |
| AATATGCCTTATGCTATGAT+TGG | - | chr5.3:65953273-65953292 | MS.gene93879:intron | 30.0% | |
| ACAAATGCAGATTTGATTAG+AGG | - | chr5.3:65951942-65951961 | MS.gene93879:CDS | 30.0% | |
| ACAACATATACTTCAGTTCA+GGG | + | chr5.3:65952036-65952055 | None:intergenic | 30.0% | |
| ACGAATAACAATCAAATTGC+CGG | + | chr5.3:65952068-65952087 | None:intergenic | 30.0% | |
| AGTTATCATAAACTCTGTCT+AGG | - | chr5.3:65952454-65952473 | MS.gene93879:CDS | 30.0% | |
| ATCAAATCTGCATTTGTAGA+CGG | + | chr5.3:65951939-65951958 | None:intergenic | 30.0% | |
| CACACCTTATGATATTAGAT+AGG | + | chr5.3:65952636-65952655 | None:intergenic | 30.0% | |
| CAGATATACTTTCTTATGTC+CGG | - | chr5.3:65952576-65952595 | MS.gene93879:CDS | 30.0% | |
| GTTGAAGTTCAGAAAAAGAA+TGG | - | chr5.3:65952766-65952785 | MS.gene93879:intron | 30.0% | |
| TCACTATCTCAAATATTGCA+AGG | - | chr5.3:65953479-65953498 | MS.gene93879:CDS | 30.0% | |
| TCTATTACTCTCTACAAATC+CGG | + | chr5.3:65952390-65952409 | None:intergenic | 30.0% | |
| TTCGTGCCAATGAATTTATA+TGG | - | chr5.3:65952083-65952102 | MS.gene93879:CDS | 30.0% | |
| ! | AACAAAACTTGGTGGTTAAA+AGG | + | chr5.3:65952260-65952279 | None:intergenic | 30.0% |
| ! | ACTTCTTTTGCAAAACATGA+AGG | + | chr5.3:65952688-65952707 | None:intergenic | 30.0% |
| ! | TCATGTTTTGCAAAAGAAGT+AGG | - | chr5.3:65952688-65952707 | MS.gene93879:intron | 30.0% |
| ! | TGTCCTTATTTAGCAGTTAA+AGG | - | chr5.3:65952654-65952673 | MS.gene93879:intron | 30.0% |
| !! | GATATATCGGATAATGGATA+TGG | + | chr5.3:65952928-65952947 | None:intergenic | 30.0% |
| !!! | ATTTGTACGTTAGTTTTGTG+CGG | - | chr5.3:65952502-65952521 | MS.gene93879:CDS | 30.0% |
| AACGCAGCATAAACAAAACT+TGG | + | chr5.3:65952271-65952290 | None:intergenic | 35.0% | |
| ACTCATGACCATAAGAAACA+AGG | - | chr5.3:65952888-65952907 | MS.gene93879:intron | 35.0% | |
| AGGTTTCACATAGTATCCAT+GGG | + | chr5.3:65953421-65953440 | None:intergenic | 35.0% | |
| AGTTCAGAAAAAGAATGGCA+AGG | - | chr5.3:65952771-65952790 | MS.gene93879:intron | 35.0% | |
| ATAACATTGTAGATGGTGCA+TGG | - | chr5.3:65952833-65952852 | MS.gene93879:intron | 35.0% | |
| ATGGTCATGAGTAGTAGATT+AGG | + | chr5.3:65952880-65952899 | None:intergenic | 35.0% | |
| CATATTATTTGCAACAGCGA+AGG | + | chr5.3:65953259-65953278 | None:intergenic | 35.0% | |
| GCTTCTATATTCTGTTTCCA+AGG | - | chr5.3:65951996-65952015 | MS.gene93879:CDS | 35.0% | |
| GTGTACAATTGAAGGTGATT+GGG | - | chr5.3:65951809-65951828 | MS.gene93879:CDS | 35.0% | |
| TAACATTGTAGATGGTGCAT+GGG | - | chr5.3:65952834-65952853 | MS.gene93879:intron | 35.0% | |
| TAGGTTTCACATAGTATCCA+TGG | + | chr5.3:65953422-65953441 | None:intergenic | 35.0% | |
| TCAAAATCTTGACAGATGTG+CGG | + | chr5.3:65953008-65953027 | None:intergenic | 35.0% | |
| TCGCCTTTAACTGCTAAATA+AGG | + | chr5.3:65952660-65952679 | None:intergenic | 35.0% | |
| TGGATACTATGTGAAACCTA+TGG | - | chr5.3:65953422-65953441 | MS.gene93879:CDS | 35.0% | |
| TGTACAATTGAAGGTGATTG+GGG | - | chr5.3:65951810-65951829 | MS.gene93879:CDS | 35.0% | |
| TGTGTACAATTGAAGGTGAT+TGG | - | chr5.3:65951808-65951827 | MS.gene93879:CDS | 35.0% | |
| TTATTTAGCAGTTAAAGGCG+AGG | - | chr5.3:65952659-65952678 | MS.gene93879:intron | 35.0% | |
| ! | ATATGGTTGAAGAGTGTAAG+TGG | - | chr5.3:65952349-65952368 | MS.gene93879:CDS | 35.0% |
| ! | ATGGGTCTATCTGAAATATG+CGG | - | chr5.3:65952852-65952871 | MS.gene93879:intron | 35.0% |
| ! | ATTTGAGATAGTGATTGACC+TGG | + | chr5.3:65953473-65953492 | None:intergenic | 35.0% |
| ! | CATGTCTGAAATAGAAACCA+TGG | - | chr5.3:65952538-65952557 | MS.gene93879:CDS | 35.0% |
| ATGACCATAAGAAACAAGGC+TGG | - | chr5.3:65952892-65952911 | MS.gene93879:intron | 40.0% | |
| ATGCCTTATGCTATGATTGG+TGG | - | chr5.3:65953276-65953295 | MS.gene93879:intron | 40.0% | |
| CATAAGAAACAAGGCTGGAT+TGG | - | chr5.3:65952897-65952916 | MS.gene93879:intron | 40.0% | |
| CCTGATGAAGTAATGAACCT+CGG | + | chr5.3:65952961-65952980 | None:intergenic | 40.0% | |
| CGAGGTTCATTACTTCATCA+GGG | - | chr5.3:65952959-65952978 | MS.gene93879:intron | 40.0% | |
| GACAAAGATAACACAGTCCT+TGG | - | chr5.3:65953369-65953388 | MS.gene93879:CDS | 40.0% | |
| GAGGTTCATTACTTCATCAG+GGG | - | chr5.3:65952960-65952979 | MS.gene93879:intron | 40.0% | |
| GCAAGGGATATATCGGATAA+TGG | + | chr5.3:65952934-65952953 | None:intergenic | 40.0% | |
| GCAGCATAAACAAAACTTGG+TGG | + | chr5.3:65952268-65952287 | None:intergenic | 40.0% | |
| GGACTGTGTTATCTTTGTCA+TGG | + | chr5.3:65953368-65953387 | None:intergenic | 40.0% | |
| GGGTACAAAATGCATAACCT+TGG | + | chr5.3:65952016-65952035 | None:intergenic | 40.0% | |
| GTACAATTGAAGGTGATTGG+GGG | - | chr5.3:65951811-65951830 | MS.gene93879:CDS | 40.0% | |
| GTGGATAAAATGATGCAGAC+CGG | - | chr5.3:65952368-65952387 | MS.gene93879:CDS | 40.0% | |
| TATGTGAAACCTATGGTCAG+CGG | - | chr5.3:65953429-65953448 | MS.gene93879:CDS | 40.0% | |
| TCACCACCAATCATAGCATA+AGG | + | chr5.3:65953282-65953301 | None:intergenic | 40.0% | |
| TCAGACTGCAATATGAACCT+TGG | + | chr5.3:65951975-65951994 | None:intergenic | 40.0% | |
| TGACAGATAAAGTTCAGCCA+TGG | + | chr5.3:65952558-65952577 | None:intergenic | 40.0% | |
| TGATTGGGGGACAATATGTA+AGG | - | chr5.3:65951824-65951843 | MS.gene93879:CDS | 40.0% | |
| TGCGGAAAAAATGCACTAAC+TGG | + | chr5.3:65952990-65953009 | None:intergenic | 40.0% | |
| ! | TGGGTCTATCTGAAATATGC+GGG | - | chr5.3:65952853-65952872 | MS.gene93879:intron | 40.0% |
| !! | ATGCTATGATTGGTGGTGAT+TGG | - | chr5.3:65953283-65953302 | MS.gene93879:intron | 40.0% |
| !! | CAATCCAGCCTTGTTTCTTA+TGG | + | chr5.3:65952899-65952918 | None:intergenic | 40.0% |
| !! | TGATTAGAGGCATTGATCCA+AGG | - | chr5.3:65951955-65951974 | MS.gene93879:CDS | 40.0% |
| AACGACCTTCGACAAACCTA+CGG | + | chr5.3:65951851-65951870 | None:intergenic | 45.0% | |
| AGTATGCTGGAACAGATGTC+GGG | - | chr5.3:65953507-65953526 | MS.gene93879:CDS | 45.0% | |
| ATCCATGGGTGCAGTGTATT+GGG | + | chr5.3:65953407-65953426 | None:intergenic | 45.0% | |
| CAACAGCGAACTTAACTGCA+TGG | + | chr5.3:65953344-65953363 | None:intergenic | 45.0% | |
| CCAACAATCGTAAGTGTGGT+AGG | + | chr5.3:65953204-65953223 | None:intergenic | 45.0% | |
| CCGAGGTTCATTACTTCATC+AGG | - | chr5.3:65952958-65952977 | MS.gene93879:intron | 45.0% | |
| CCTACCACACTTACGATTGT+TGG | - | chr5.3:65953201-65953220 | MS.gene93879:CDS | 45.0% | |
| CTTACGATTGTTGGTCCGAA+CGG | - | chr5.3:65953210-65953229 | MS.gene93879:intron | 45.0% | |
| GAGTATGCTGGAACAGATGT+CGG | - | chr5.3:65953506-65953525 | MS.gene93879:CDS | 45.0% | |
| GTAAGTGTGGTAGGTTTCTG+TGG | + | chr5.3:65953195-65953214 | None:intergenic | 45.0% | |
| GTTTCTGTGGCAAGGATTTC+TGG | + | chr5.3:65953182-65953201 | None:intergenic | 45.0% | |
| TATCCATGGGTGCAGTGTAT+TGG | + | chr5.3:65953408-65953427 | None:intergenic | 45.0% | |
| TGCAGTGTATTGGGGTATGT+CGG | + | chr5.3:65953398-65953417 | None:intergenic | 45.0% | |
| TGTTTAACCAGACTTTGCCG+TGG | - | chr5.3:65953145-65953164 | MS.gene93879:CDS | 45.0% | |
| ! | GGGTCTATCTGAAATATGCG+GGG | - | chr5.3:65952854-65952873 | MS.gene93879:intron | 45.0% |
| ! | TATATACCAAAGTGCCCGAG+AGG | + | chr5.3:65953044-65953063 | None:intergenic | 45.0% |
| !!! | TGTACGTTAGTTTTGTGCGG+TGG | - | chr5.3:65952505-65952524 | MS.gene93879:CDS | 45.0% |
| AACCAGACTTTGCCGTGGTA+TGG | - | chr5.3:65953150-65953169 | MS.gene93879:CDS | 50.0% | |
| AATGAACCTCGGCAACGCAA+GGG | + | chr5.3:65952950-65952969 | None:intergenic | 50.0% | |
| ACCTCTGCGATGTGCAAATC+AGG | + | chr5.3:65953311-65953330 | None:intergenic | 50.0% | |
| ACGACCTTCGACAAACCTAC+GGG | + | chr5.3:65951850-65951869 | None:intergenic | 50.0% | |
| ACTTCGTCTGATGTCCTCTC+GGG | - | chr5.3:65953027-65953046 | MS.gene93879:intron | 50.0% | |
| AGGTCGTTCGATAGACCTTG+CGG | - | chr5.3:65951863-65951882 | MS.gene93879:CDS | 50.0% | |
| AGGTCTACTTCAGACAAGGC+TGG | - | chr5.3:65952791-65952810 | MS.gene93879:intron | 50.0% | |
| ATATATCCCTTGCGTTGCCG+AGG | - | chr5.3:65952941-65952960 | MS.gene93879:intron | 50.0% | |
| CAGTGGTCGATATGTGTACC+AGG | - | chr5.3:65953452-65953471 | MS.gene93879:CDS | 50.0% | |
| CATCTCCATGTACAGCCGTT+CGG | + | chr5.3:65953228-65953247 | None:intergenic | 50.0% | |
| CGGACCAACAATCGTAAGTG+TGG | + | chr5.3:65953208-65953227 | None:intergenic | 50.0% | |
| CGGCAACGCAAGGGATATAT+CGG | + | chr5.3:65952941-65952960 | None:intergenic | 50.0% | |
| CTGCATTTGTAGACGGCACA+GGG | + | chr5.3:65951932-65951951 | None:intergenic | 50.0% | |
| GACTTCGTCTGATGTCCTCT+CGG | - | chr5.3:65953026-65953045 | MS.gene93879:intron | 50.0% | |
| GATAAGTCCTCAACCGAGAC+AGG | + | chr5.3:65952156-65952175 | None:intergenic | 50.0% | |
| GATTTGCACATCGCAGAGGT+TGG | - | chr5.3:65953311-65953330 | MS.gene93879:intron | 50.0% | |
| GGACAATATGTAAGGCCCGT+AGG | - | chr5.3:65951832-65951851 | MS.gene93879:CDS | 50.0% | |
| GGCAAGGTCTACTTCAGACA+AGG | - | chr5.3:65952787-65952806 | MS.gene93879:intron | 50.0% | |
| TAATGAACCTCGGCAACGCA+AGG | + | chr5.3:65952951-65952970 | None:intergenic | 50.0% | |
| TCCATGGGTGCAGTGTATTG+GGG | + | chr5.3:65953406-65953425 | None:intergenic | 50.0% | |
| TCTGCATTTGTAGACGGCAC+AGG | + | chr5.3:65951933-65951952 | None:intergenic | 50.0% | |
| TGTGGTAGGTTTCTGTGGCA+AGG | + | chr5.3:65953190-65953209 | None:intergenic | 50.0% | |
| TTCGATAGACCTTGCGGTCA+CGG | - | chr5.3:65951869-65951888 | MS.gene93879:CDS | 50.0% | |
| TTCTGGCAGAAGCCATACCA+CGG | + | chr5.3:65953165-65953184 | None:intergenic | 50.0% | |
| TTGGGGTATGTCGGAAACCA+AGG | + | chr5.3:65953389-65953408 | None:intergenic | 50.0% | |
| ! | ACCTGATTTGCACATCGCAG+AGG | - | chr5.3:65953307-65953326 | MS.gene93879:intron | 50.0% |
| ! | TTGCAAGGCGAAGAGTATGC+TGG | - | chr5.3:65953494-65953513 | MS.gene93879:CDS | 50.0% |
| !! | ACTTCAGACAAGGCTGGTCT+AGG | - | chr5.3:65952797-65952816 | MS.gene93879:intron | 50.0% |
| !! | CTTCAGACAAGGCTGGTCTA+GGG | - | chr5.3:65952798-65952817 | MS.gene93879:intron | 50.0% |
| AAACCTATGGTCAGCGGCAG+TGG | - | chr5.3:65953435-65953454 | MS.gene93879:CDS | 55.0% | |
| AAGGCCCGTAGGTTTGTCGA+AGG | - | chr5.3:65951843-65951862 | MS.gene93879:CDS | 55.0% | |
| ACCCCAATACACTGCACCCA+TGG | - | chr5.3:65953402-65953421 | MS.gene93879:CDS | 55.0% | |
| AGCCATACCACGGCAAAGTC+TGG | + | chr5.3:65953155-65953174 | None:intergenic | 55.0% | |
| TGATGTCCTCTCGGGCACTT+TGG | - | chr5.3:65953035-65953054 | MS.gene93879:intron | 55.0% | |
| TTGGTCCGAACGGCTGTACA+TGG | - | chr5.3:65953220-65953239 | MS.gene93879:intron | 55.0% | |
| ! | ACATCGCAGAGGTTGGTTGC+AGG | - | chr5.3:65953318-65953337 | MS.gene93879:intron | 55.0% |
| !! | ACAAGGCTGGTCTAGGGTGA+AGG | - | chr5.3:65952804-65952823 | MS.gene93879:intron | 55.0% |
| ACGACCTCGATCCTGTGCGA+AGG | - | chr5.3:65952128-65952147 | MS.gene93879:CDS | 60.0% | |
| CGACCTCGATCCTGTGCGAA+GGG | - | chr5.3:65952129-65952148 | MS.gene93879:CDS | 60.0% | |
| CTGTGCGAAGGGACCTGTCT+CGG | - | chr5.3:65952140-65952159 | MS.gene93879:CDS | 60.0% | |
| GAAGGGACCTGTCTCGGTTG+AGG | - | chr5.3:65952146-65952165 | MS.gene93879:CDS | 60.0% | |
| GATAGACCTTGCGGTCACGG+AGG | - | chr5.3:65951872-65951891 | MS.gene93879:CDS | 60.0% | |
| TCTTCTCCTCCGTGACCGCA+AGG | + | chr5.3:65951881-65951900 | None:intergenic | 60.0% | |
| CGACCACTGCCGCTGACCAT+AGG | + | chr5.3:65953441-65953460 | None:intergenic | 65.0% | |
| CGAGACAGGTCCCTTCGCAC+AGG | + | chr5.3:65952142-65952161 | None:intergenic | 65.0% | |
| GGTCCCTTCGCACAGGATCG+AGG | + | chr5.3:65952135-65952154 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 65951807 | 65953533 | 65951807 | ID=MS.gene93879 |
| chr5.3 | mRNA | 65951807 | 65953533 | 65951807 | ID=MS.gene93879.t1;Parent=MS.gene93879 |
| chr5.3 | exon | 65953323 | 65953533 | 65953323 | ID=MS.gene93879.t1.exon1;Parent=MS.gene93879.t1 |
| chr5.3 | CDS | 65953323 | 65953533 | 65953323 | ID=cds.MS.gene93879.t1;Parent=MS.gene93879.t1 |
| chr5.3 | exon | 65953142 | 65953221 | 65953142 | ID=MS.gene93879.t1.exon2;Parent=MS.gene93879.t1 |
| chr5.3 | CDS | 65953142 | 65953221 | 65953142 | ID=cds.MS.gene93879.t1;Parent=MS.gene93879.t1 |
| chr5.3 | exon | 65952284 | 65952670 | 65952284 | ID=MS.gene93879.t1.exon3;Parent=MS.gene93879.t1 |
| chr5.3 | CDS | 65952284 | 65952670 | 65952284 | ID=cds.MS.gene93879.t1;Parent=MS.gene93879.t1 |
| chr5.3 | exon | 65951807 | 65952184 | 65951807 | ID=MS.gene93879.t1.exon4;Parent=MS.gene93879.t1 |
| chr5.3 | CDS | 65951807 | 65952184 | 65951807 | ID=cds.MS.gene93879.t1;Parent=MS.gene93879.t1 |
| Gene Sequence |
| Protein sequence |
