AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94055

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94055.t1 MTR_8g044220 92.126 381 13 3 1 380 48 412 0.0 716
MS.gene94055.t1 MTR_6g012450 35.484 372 159 12 63 379 123 468 3.11e-58 197
MS.gene94055.t1 MTR_7g010950 34.515 423 192 18 1 379 77 458 9.34e-55 187
MS.gene94055.t1 MTR_4g082060 35.359 362 152 13 65 379 111 437 2.97e-54 186
MS.gene94055.t1 MTR_7g086780 38.415 328 148 9 61 357 84 388 8.71e-54 183
MS.gene94055.t1 MTR_3g435480 35.000 400 183 13 22 378 72 437 2.71e-53 183
MS.gene94055.t1 MTR_6g027450 34.375 320 147 11 24 302 32 329 3.54e-40 145
MS.gene94055.t1 MTR_6g027460 31.627 332 149 11 45 316 54 367 7.44e-35 132
MS.gene94055.t1 MTR_2g016030 75.000 64 16 0 66 129 37 100 1.84e-32 120
MS.gene94055.t1 MTR_5g041420 64.198 81 29 0 51 131 113 193 1.60e-31 122
MS.gene94055.t1 MTR_5g041380 51.961 102 44 1 46 142 97 198 2.14e-30 120
MS.gene94055.t1 MTR_5g041530 62.338 77 29 0 53 129 117 193 9.57e-30 118
MS.gene94055.t1 MTR_5g041400 53.684 95 44 0 39 133 82 176 3.64e-29 116
MS.gene94055.t1 MTR_4g022370 67.797 59 19 0 72 130 78 136 4.40e-25 105
MS.gene94055.t1 MTR_3g091820 59.701 67 27 0 65 131 32 98 6.46e-25 103
MS.gene94055.t1 MTR_2g059540 74.000 50 13 0 75 124 30 79 1.25e-24 100
MS.gene94055.t1 MTR_8g079060 55.714 70 31 0 76 145 29 98 3.23e-24 99.8
MS.gene94055.t1 MTR_4g109980 71.698 53 15 0 74 126 38 90 3.42e-24 102
MS.gene94055.t1 MTR_8g027295 61.290 62 24 0 71 132 19 80 6.02e-24 100
MS.gene94055.t1 MTR_2g096740 52.809 89 38 2 47 135 37 121 8.29e-24 100
MS.gene94055.t1 MTR_2g096740 54.118 85 35 2 47 131 52 132 1.01e-23 100
MS.gene94055.t1 MTR_4g063780 66.102 59 20 0 72 130 71 129 1.14e-23 100
MS.gene94055.t1 MTR_2g093220 63.333 60 22 0 71 130 35 94 1.97e-23 99.4
MS.gene94055.t1 MTR_8g479350 72.222 54 15 0 76 129 68 121 2.11e-23 100
MS.gene94055.t1 MTR_8g015840 69.231 52 16 0 76 127 20 71 5.52e-23 96.3
MS.gene94055.t1 MTR_8g068210 46.914 81 43 0 50 130 6 86 8.53e-23 98.2
MS.gene94055.t1 MTR_7g059400 69.811 53 16 0 78 130 78 130 1.48e-22 97.8
MS.gene94055.t1 MTR_1g077600 56.452 62 27 0 70 131 37 98 1.88e-22 96.3
MS.gene94055.t1 MTR_1g077600 59.322 59 24 0 70 128 37 95 2.28e-22 96.3
MS.gene94055.t1 MTR_7g024670 69.811 53 16 0 78 130 79 131 3.95e-22 97.1
MS.gene94055.t1 MTR_5g031440 65.455 55 19 0 72 126 39 93 7.88e-22 95.5
MS.gene94055.t1 MTR_4g088580 67.925 53 17 0 78 130 57 109 8.30e-22 96.3
MS.gene94055.t1 MTR_4g461080 60.000 65 25 1 65 128 17 81 2.82e-21 92.8
MS.gene94055.t1 MTR_3g077750 53.521 71 32 1 57 126 41 111 5.86e-21 93.2
MS.gene94055.t1 MTR_4g089095 65.455 55 18 1 76 130 50 103 1.07e-20 91.7
MS.gene94055.t1 MTR_3g090430 64.151 53 19 0 78 130 53 105 1.11e-20 92.0
MS.gene94055.t1 MTR_4g089095 65.455 55 18 1 76 130 16 69 1.20e-20 90.9
MS.gene94055.t1 MTR_2g014060 68.000 50 16 0 78 127 27 76 1.32e-20 92.0
MS.gene94055.t1 MTR_2g014170 68.000 50 16 0 75 124 44 93 1.39e-20 91.7
MS.gene94055.t1 MTR_1g056810 64.151 53 19 0 78 130 14 66 2.21e-20 90.5
MS.gene94055.t1 MTR_2g013370 66.038 53 17 1 78 130 48 99 3.37e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94055.t1 AT5G39660 35.340 382 170 16 27 379 91 424 3.55e-52 180
MS.gene94055.t1 AT5G39660 35.340 382 170 16 27 379 91 424 3.55e-52 180
MS.gene94055.t1 AT5G39660 35.340 382 170 16 27 379 91 424 3.55e-52 180
MS.gene94055.t1 AT3G47500 35.849 371 165 16 49 377 78 417 2.21e-49 172
MS.gene94055.t1 AT1G69570 29.504 383 156 12 27 378 67 366 1.91e-36 137
MS.gene94055.t1 AT5G62430 62.921 89 32 1 41 129 20 107 1.97e-34 129
MS.gene94055.t1 AT1G29160 69.863 73 22 0 57 129 43 115 2.50e-34 125
MS.gene94055.t1 AT2G34140 76.667 60 14 0 70 129 52 111 2.06e-32 120
MS.gene94055.t1 AT1G26790 64.557 79 26 1 53 129 86 164 5.99e-32 124
MS.gene94055.t1 AT5G60850 75.000 56 14 0 76 131 51 106 3.58e-26 107
MS.gene94055.t1 AT3G55370 68.333 60 19 0 72 131 72 131 4.65e-25 104
MS.gene94055.t1 AT3G55370 68.333 60 19 0 72 131 72 131 5.09e-25 104
MS.gene94055.t1 AT3G55370 68.333 60 19 0 72 131 117 176 7.08e-25 104
MS.gene94055.t1 AT2G37590 65.000 60 21 0 72 131 85 144 1.57e-24 103
MS.gene94055.t1 AT1G51700 68.421 57 17 1 76 131 33 89 1.80e-24 99.8
MS.gene94055.t1 AT2G28810 69.643 56 17 0 72 127 73 128 2.68e-24 102
MS.gene94055.t1 AT3G45610 50.633 79 34 1 58 131 17 95 3.86e-24 100
MS.gene94055.t1 AT2G28810 67.241 58 19 0 70 127 88 145 4.30e-24 102
MS.gene94055.t1 AT5G65590 51.685 89 40 1 43 131 11 96 7.21e-24 100
MS.gene94055.t1 AT5G60200 55.714 70 31 0 72 141 51 120 8.32e-24 99.8
MS.gene94055.t1 AT1G07640 69.091 55 17 0 76 130 21 75 1.90e-23 99.0
MS.gene94055.t1 AT3G50410 50.000 80 30 1 61 130 5 84 1.96e-23 98.6
MS.gene94055.t1 AT4G38000 68.966 58 17 1 75 132 40 96 1.99e-23 98.2
MS.gene94055.t1 AT3G21270 69.811 53 16 0 76 128 29 81 2.05e-23 97.1
MS.gene94055.t1 AT1G07640 69.091 55 17 0 76 130 77 131 3.51e-23 99.4
MS.gene94055.t1 AT1G07640 69.091 55 17 0 76 130 85 139 4.38e-23 99.4
MS.gene94055.t1 AT4G24060 56.061 66 29 0 65 130 42 107 5.13e-23 99.0
MS.gene94055.t1 AT5G02460 66.102 59 20 0 72 130 91 149 5.32e-23 99.8
MS.gene94055.t1 AT3G61850 60.656 61 24 0 71 131 57 117 5.43e-23 97.8
MS.gene94055.t1 AT3G61850 60.656 61 24 0 71 131 57 117 5.43e-23 97.8
MS.gene94055.t1 AT3G61850 60.656 61 24 0 71 131 69 129 6.04e-23 98.2
MS.gene94055.t1 AT3G61850 60.656 61 24 0 71 131 57 117 9.71e-23 97.8
MS.gene94055.t1 AT3G61850 60.656 61 24 0 71 131 69 129 9.93e-23 97.8
MS.gene94055.t1 AT1G64620 61.667 60 23 0 65 124 38 97 1.47e-22 97.8
MS.gene94055.t1 AT4G00940 50.000 78 39 0 71 148 63 140 2.29e-22 96.3
MS.gene94055.t1 AT4G00940 50.000 78 39 0 71 148 63 140 2.29e-22 96.3
MS.gene94055.t1 AT4G00940 50.000 78 39 0 71 148 63 140 2.29e-22 96.3
MS.gene94055.t1 AT4G21050 37.313 134 66 3 63 196 11 126 2.38e-22 94.4
MS.gene94055.t1 AT2G28510 68.519 54 17 0 78 131 50 103 4.03e-22 95.5
MS.gene94055.t1 AT5G66940 53.623 69 24 1 62 130 26 86 8.99e-22 93.2
MS.gene94055.t1 AT1G47655 69.388 49 15 0 76 124 29 77 1.06e-21 92.4
MS.gene94055.t1 AT1G28310 65.455 55 19 0 76 130 27 81 1.29e-21 94.7
MS.gene94055.t1 AT1G28310 65.455 55 19 0 76 130 51 105 1.89e-21 94.4
MS.gene94055.t1 AT2G46590 64.151 53 19 0 71 123 63 115 1.10e-20 92.8
MS.gene94055.t1 AT2G46590 64.151 53 19 0 71 123 75 127 1.18e-20 92.8
MS.gene94055.t1 AT3G52440 62.264 53 20 0 78 130 27 79 2.31e-20 89.7
MS.gene94055.t1 AT3G52440 62.264 53 20 0 78 130 46 98 2.80e-20 90.1
MS.gene94055.t1 AT1G21340 61.111 54 21 0 78 131 40 93 4.09e-20 89.4
MS.gene94055.t1 AT5G62940 65.306 49 17 0 78 126 75 123 1.88e-19 89.4
MS.gene94055.t1 AT4G21040 67.347 49 16 0 78 126 27 75 3.74e-18 83.2
MS.gene94055.t1 AT4G21080 65.306 49 17 0 78 126 27 75 2.26e-17 81.3
MS.gene94055.t1 AT4G21030 61.364 44 17 0 78 121 23 66 2.03e-12 65.9

Find 86 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACGATGAAGCCGAATATT+TGG 0.219567 8.4:-56261912 MS.gene94055:CDS
AAAACACTTCCTTTCATAAT+AGG 0.225913 8.4:+56261799 None:intergenic
TCCATTTGGCCAATCCAATT+TGG 0.234872 8.4:+56262066 None:intergenic
GAACTCTTAGCAGCCTCTTC+TGG 0.248749 8.4:+56261862 None:intergenic
ATTGGGGCTGTATGCCAAAT+TGG 0.283292 8.4:-56262080 MS.gene94055:CDS
GGACTTGACGTTATGTTATC+AGG 0.299089 8.4:+56262144 None:intergenic
GGTAATAGGTCACCAACTTT+AGG 0.303102 8.4:-56261967 MS.gene94055:CDS
TTGATTGTCAGTATCTCTTT+TGG 0.303295 8.4:+56262713 None:intergenic
GGACAGCTGGTGGAGTAATT+AGG 0.315052 8.4:-56262557 MS.gene94055:CDS
TTGCTTATTTCTACGCTTAC+CGG 0.329821 8.4:+56262518 None:intergenic
ACCGATGACACATTCGTATT+GGG 0.335040 8.4:-56262097 MS.gene94055:CDS
TCTGTGAGAGCTGCTGAATC+CGG 0.352345 8.4:-56262312 MS.gene94055:CDS
GTGGTACTTGTTCCGGTAAT+AGG 0.368265 8.4:-56261981 MS.gene94055:CDS
TTGTGGATTAGCTTGTTTGC+TGG 0.369067 8.4:+56262827 None:intergenic
ATTAGTTCTATGAGCTGCTT+TGG 0.372933 8.4:+56262749 None:intergenic
GCTAGCAGTGGTACTTGTTC+CGG 0.387977 8.4:-56261988 MS.gene94055:CDS
AGCTGCTGAATCCGGGGAAA+TGG 0.391294 8.4:-56262304 MS.gene94055:CDS
GCCAAATTGGATTGGCCAAA+TGG 0.393333 8.4:-56262067 MS.gene94055:CDS
CTAACGATAATTCTTCCATT+TGG 0.399422 8.4:+56262052 None:intergenic
ATGGAAGAATTATCGTTAGT+TGG 0.407541 8.4:-56262048 MS.gene94055:CDS
GTACCGGTATTGTACATGTT+TGG 0.410276 8.4:+56262786 None:intergenic
GTAATTAGGAATGTTCCTAT+TGG 0.410965 8.4:-56262543 MS.gene94055:CDS
CTACGCTTACCGGCTCCAAT+AGG 0.417710 8.4:+56262528 None:intergenic
TACGATGAAGCCGAATATTT+GGG 0.418538 8.4:-56261911 MS.gene94055:CDS
CGAGAACTTACATTTGACTT+AGG 0.422907 8.4:+56261763 None:intergenic
TAAAGTTGGTGACCTATTAC+CGG 0.424336 8.4:+56261969 None:intergenic
CTATGAGCTGCTTTGGTCAC+CGG 0.424624 8.4:+56262756 None:intergenic
TCTACAGCCATCATGGTTGC+AGG 0.425416 8.4:+56262123 None:intergenic
GGACACGGCAGAACCTTGTC+TGG 0.427129 8.4:+56262672 None:intergenic
AGCAGCTCTCACAGAAGAGC+TGG 0.431132 8.4:+56262320 None:intergenic
GACTTATCCATGTTGGAATC+CGG 0.435979 8.4:-56262178 MS.gene94055:CDS
GTTTCTACCGATTCACTAAG+AGG 0.436362 8.4:+56262417 None:intergenic
CTGTGAGAGCTGCTGAATCC+GGG 0.445335 8.4:-56262311 MS.gene94055:CDS
GTGTCCTCGCTGCAATAGTT+TGG 0.447623 8.4:-56262655 MS.gene94055:CDS
TACCGATGACACATTCGTAT+TGG 0.449308 8.4:-56262098 MS.gene94055:CDS
CATTCCATCACCTTCCTCTT+CGG 0.453115 8.4:-56262010 MS.gene94055:CDS
CAATACCGGTACTTTGAAAC+CGG 0.464327 8.4:-56262775 MS.gene94055:CDS
TGCCAGAGGTATTGGACAGC+TGG 0.480992 8.4:-56262570 MS.gene94055:CDS
ATTATTACTCTGCTCCTCCA+TGG 0.483782 8.4:-56262200 MS.gene94055:CDS
TTAGGAAAACATTGTAGAGA+TGG 0.504456 8.4:-56261949 MS.gene94055:CDS
CGGTACTTCTACAGCCATCA+TGG 0.505901 8.4:+56262116 None:intergenic
GGAAGTTCCTCTTAGTGAAT+CGG 0.506714 8.4:-56262424 MS.gene94055:CDS
AGGCTGCTAAGAGTTCTATA+TGG 0.510382 8.4:-56261855 MS.gene94055:CDS
ACTAAGAGGAACTTCCTCCT+TGG 0.511294 8.4:+56262431 None:intergenic
CTCCATGGACTTATCCATGT+TGG 0.511657 8.4:-56262185 MS.gene94055:CDS
TTCTGAATACTCCATTTCCC+CGG 0.521423 8.4:+56262293 None:intergenic
CACCAGCTGTCCAATACCTC+TGG 0.521554 8.4:+56262568 None:intergenic
GGCTGTATGCCAAATTGGAT+TGG 0.523809 8.4:-56262075 MS.gene94055:CDS
GGTCACCGGTTTCAAAGTAC+CGG 0.526533 8.4:+56262770 None:intergenic
AGGAATGTTCCTATTGGAGC+CGG 0.533831 8.4:-56262537 MS.gene94055:CDS
TTAGTTGGATCTGCGTTCAA+CGG 0.546446 8.4:-56262033 MS.gene94055:CDS
TTGGAATCTATGTGTATGAC+AGG 0.546648 8.4:+56262450 None:intergenic
ATTCCAAACATGTACAATAC+CGG 0.552268 8.4:-56262789 MS.gene94055:CDS
TAATAATGAAGCGAATGTAA+AGG 0.553509 8.4:+56262216 None:intergenic
GAAATGGAGTATTCAGAAAG+TGG 0.559216 8.4:-56262288 MS.gene94055:CDS
CAGAATTAATGATCCAGAAG+AGG 0.559620 8.4:-56261875 MS.gene94055:CDS
TTATCAGGCTTAAATGCCGC+CGG 0.562271 8.4:+56262159 None:intergenic
TGTCATACACATAGATTCCA+AGG 0.569094 8.4:-56262448 MS.gene94055:CDS
TATGACAGGTACTGCATCAA+GGG 0.571285 8.4:+56262464 None:intergenic
CAGAACAAACCTATTATGAA+AGG 0.575243 8.4:-56261808 MS.gene94055:CDS
GTCAAGTCCTGCAACCATGA+TGG 0.576641 8.4:-56262130 MS.gene94055:CDS
AAACTATTGCAGCGAGGACA+CGG 0.577128 8.4:+56262657 None:intergenic
ATAGTATTAGCATCTTCTTG+TGG 0.578337 8.4:+56262810 None:intergenic
GAAAGTGGAATAGAGCATGT+TGG 0.578755 8.4:-56262273 MS.gene94055:CDS
CCCCAATACGAATGTGTCAT+CGG 0.582026 8.4:+56262096 None:intergenic
ACTTTGACACCACAATGCAA+TGG 0.588024 8.4:-56262246 MS.gene94055:CDS
TTCCAACATGGATAAGTCCA+TGG 0.593931 8.4:+56262183 None:intergenic
GTATGACAGGTACTGCATCA+AGG 0.597457 8.4:+56262463 None:intergenic
AGTACCACTGCTAGCCGAAG+AGG 0.608123 8.4:+56261996 None:intergenic
CTAGCCGAAGAGGAAGGTGA+TGG 0.608712 8.4:+56262006 None:intergenic
CCGATGACACATTCGTATTG+GGG 0.610193 8.4:-56262096 MS.gene94055:CDS
CCTTCCTCTTCGGCTAGCAG+TGG 0.612556 8.4:-56262000 MS.gene94055:CDS
AGAAACTGTGTTAAATCACA+AGG 0.612750 8.4:-56262400 MS.gene94055:CDS
CAGAGGTATTGGACAGCTGG+TGG 0.613246 8.4:-56262567 MS.gene94055:CDS
ATTACAATGTTAACCAACCA+AGG 0.617440 8.4:-56262608 MS.gene94055:CDS
GGACTCTTCTACTGTCAAAG+AGG 0.620817 8.4:-56262358 MS.gene94055:CDS
TGTGAGAGCTGCTGAATCCG+GGG 0.623039 8.4:-56262310 MS.gene94055:CDS
AGAACTTGACAATTCTGCAA+AGG 0.627470 8.4:+56262492 None:intergenic
GGAATTAAGCCATTGCATTG+TGG 0.632188 8.4:+56262237 None:intergenic
AATGCCGCCGGATTCCAACA+TGG 0.640756 8.4:+56262171 None:intergenic
TTATCCATGTTGGAATCCGG+CGG 0.663952 8.4:-56262175 MS.gene94055:CDS
CCACTGCTAGCCGAAGAGGA+AGG 0.690209 8.4:+56262000 None:intergenic
GTCTCCAAACTATTGCAGCG+AGG 0.702604 8.4:+56262651 None:intergenic
GAAACTGTGTTAAATCACAA+GGG 0.705716 8.4:-56262399 MS.gene94055:CDS
CAACATGGATAAGTCCATGG+AGG 0.737932 8.4:+56262186 None:intergenic
CATACACATAGATTCCAAGG+AGG 0.765853 8.4:-56262445 MS.gene94055:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATGAAATATGTT+AGG - chr8.4:56262357-56262376 MS.gene94055:CDS 10.0%
!! AATATATAAGAAAGATAAAA+AGG + chr8.4:56261726-56261745 None:intergenic 10.0%
!!! TATCTTTCTTATATATTTTT+TGG - chr8.4:56261729-56261748 MS.gene94055:intron 10.0%
!! AAAATGTTTATATTATAGCT+AGG - chr8.4:56261940-56261959 MS.gene94055:CDS 15.0%
!!! TTTGAAAAAGTCATTATTTT+CGG - chr8.4:56262675-56262694 MS.gene94055:CDS 15.0%
!! ATGAAAGGAAAAAAAAAATC+TGG + chr8.4:56261809-56261828 None:intergenic 20.0%
!! ATTCGTATATATATAGTTCT+AGG - chr8.4:56261859-56261878 MS.gene94055:CDS 20.0%
!! TAATCAAACAGTTAAAGAAT+AGG + chr8.4:56262454-56262473 None:intergenic 20.0%
!! TGAAAGGAAAAAAAAAATCT+GGG + chr8.4:56261808-56261827 None:intergenic 20.0%
!! TGACATGAAAAATGTTAAAT+TGG - chr8.4:56262110-56262129 MS.gene94055:CDS 20.0%
!! TTTGAACTTAACATAACAAA+AGG + chr8.4:56262400-56262419 None:intergenic 20.0%
!!! GAATTATTTTTGTTTGAATC+TGG - chr8.4:56262052-56262071 MS.gene94055:CDS 20.0%
!!! TAATGACTTTTTCAAATTAG+CGG + chr8.4:56262671-56262690 None:intergenic 20.0%
!!! TATCAATGAGTTATAACTTT+TGG - chr8.4:56262734-56262753 MS.gene94055:CDS 20.0%
!!! TCATTAATTCTGATAGTTTT+CGG + chr8.4:56263817-56263836 None:intergenic 20.0%
!!! TGTTTGATAATTTGTTTTGA+AGG - chr8.4:56261973-56261992 MS.gene94055:CDS 20.0%
!!! TTTGGTATTGTTTAATTTGT+GGG - chr8.4:56262499-56262518 MS.gene94055:CDS 20.0%
!!! TTTTGGTATTGTTTAATTTG+TGG - chr8.4:56262498-56262517 MS.gene94055:CDS 20.0%
! AAAACACTTCCTTTCATAAT+AGG + chr8.4:56263904-56263923 None:intergenic 25.0%
! AAATCAACGTTGTTAAATAG+TGG - chr8.4:56262549-56262568 MS.gene94055:CDS 25.0%
! AAATTGGACCAAATTAATTG+AGG - chr8.4:56262126-56262145 MS.gene94055:CDS 25.0%
! ACTATAGAAAATAAGTGGTA+GGG - chr8.4:56262021-56262040 MS.gene94055:CDS 25.0%
! ATAATTTGAGTCCAATTACT+CGG + chr8.4:56262192-56262211 None:intergenic 25.0%
! TAATAATGAAGCGAATGTAA+AGG + chr8.4:56263487-56263506 None:intergenic 25.0%
! TACTATAGAAAATAAGTGGT+AGG - chr8.4:56262020-56262039 MS.gene94055:CDS 25.0%
! TTAAAAAGACAACTTGCATT+AGG + chr8.4:56262761-56262780 None:intergenic 25.0%
! TTGTACTAGATAATGTATTG+TGG + chr8.4:56262612-56262631 None:intergenic 25.0%
!! ACATTTTTCATGTCAATTAC+TGG + chr8.4:56262105-56262124 None:intergenic 25.0%
!! GTGTTACTATAGAAAATAAG+TGG - chr8.4:56262016-56262035 MS.gene94055:CDS 25.0%
!! TTAATTTTGTGTTAATCCTC+TGG + chr8.4:56262344-56262363 None:intergenic 25.0%
!!! TTGAATCTGGTTTTTTAAGT+TGG - chr8.4:56262065-56262084 MS.gene94055:CDS 25.0%
!!! TTTTTTCCTTTCATACTGAA+TGG - chr8.4:56261815-56261834 MS.gene94055:CDS 25.0%
AAATTAATTGAGGTGTGTTC+TGG - chr8.4:56262136-56262155 MS.gene94055:CDS 30.0%
AAGGTGCAAAAAAGATGTAA+AGG + chr8.4:56261707-56261726 None:intergenic 30.0%
AGAAACTGTGTTAAATCACA+AGG - chr8.4:56263300-56263319 MS.gene94055:intron 30.0%
AGAACACACCTCAATTAATT+TGG + chr8.4:56262137-56262156 None:intergenic 30.0%
ATAGTATTAGCATCTTCTTG+TGG + chr8.4:56262893-56262912 None:intergenic 30.0%
ATGGAAGAATTATCGTTAGT+TGG - chr8.4:56263652-56263671 MS.gene94055:intron 30.0%
ATTACAATGTTAACCAACCA+AGG - chr8.4:56263092-56263111 MS.gene94055:intron 30.0%
ATTCCAAACATGTACAATAC+CGG - chr8.4:56262911-56262930 MS.gene94055:intron 30.0%
ATTGTGGAACAACACTAATT+TGG + chr8.4:56262596-56262615 None:intergenic 30.0%
CAGAACAAACCTATTATGAA+AGG - chr8.4:56263892-56263911 MS.gene94055:intron 30.0%
CTAACGATAATTCTTCCATT+TGG + chr8.4:56263651-56263670 None:intergenic 30.0%
CTATATCCATTCAGTATGAA+AGG + chr8.4:56261824-56261843 None:intergenic 30.0%
GAAACTGTGTTAAATCACAA+GGG - chr8.4:56263301-56263320 MS.gene94055:intron 30.0%
GTAATTAGGAATGTTCCTAT+TGG - chr8.4:56263157-56263176 MS.gene94055:intron 30.0%
TAAACAATACCAAAAACTCG+TGG + chr8.4:56262493-56262512 None:intergenic 30.0%
TTAGGAAAACATTGTAGAGA+TGG - chr8.4:56263751-56263770 MS.gene94055:intron 30.0%
TTCATACTGAATGGATATAG+AGG - chr8.4:56261824-56261843 MS.gene94055:CDS 30.0%
! AGTCCAGTTCAATTTTTCTA+TGG + chr8.4:56263327-56263346 None:intergenic 30.0%
! CTACAATGTTTTCCTAAAGT+TGG + chr8.4:56263748-56263767 None:intergenic 30.0%
! TTGATAGTATGCATTTCTAC+CGG + chr8.4:56262720-56262739 None:intergenic 30.0%
! TTGATTGTCAGTATCTCTTT+TGG + chr8.4:56262990-56263009 None:intergenic 30.0%
ACTAAGTACGAATTGTTCGT+GGG - chr8.4:56262223-56262242 MS.gene94055:CDS 35.0%
AGAACTTGACAATTCTGCAA+AGG + chr8.4:56263211-56263230 None:intergenic 35.0%
ATACGATGAAGCCGAATATT+TGG - chr8.4:56263788-56263807 MS.gene94055:intron 35.0%
ATTTCTGCAAAAATTGCCAG+AGG - chr8.4:56263116-56263135 MS.gene94055:intron 35.0%
CAGAATTAATGATCCAGAAG+AGG - chr8.4:56263825-56263844 MS.gene94055:intron 35.0%
CTGTATCATTGGAATATGTC+TGG - chr8.4:56262162-56262181 MS.gene94055:CDS 35.0%
TACGATGAAGCCGAATATTT+GGG - chr8.4:56263789-56263808 MS.gene94055:intron 35.0%
TGTCATACACATAGATTCCA+AGG - chr8.4:56263252-56263271 MS.gene94055:intron 35.0%
TTGGAATCTATGTGTATGAC+AGG + chr8.4:56263253-56263272 None:intergenic 35.0%
TTTGGTACTCAATTGCAGAA+TGG - chr8.4:56262800-56262819 MS.gene94055:CDS 35.0%
! CAATTTTTGCAGAAATGCCT+TGG + chr8.4:56263112-56263131 None:intergenic 35.0%
! CGAGAACTTACATTTGACTT+AGG + chr8.4:56263940-56263959 None:intergenic 35.0%
! CTGTTCAGATTTTGTTCTCA+AGG + chr8.4:56263875-56263894 None:intergenic 35.0%
! GAAATGGAGTATTCAGAAAG+TGG - chr8.4:56263412-56263431 MS.gene94055:intron 35.0%
! GTCAGACTTTACTTACGTTT+TGG - chr8.4:56262281-56262300 MS.gene94055:CDS 35.0%
! TGTTCTGGTTACTGTATCAT+TGG - chr8.4:56262151-56262170 MS.gene94055:CDS 35.0%
!! ATTAGTTCTATGAGCTGCTT+TGG + chr8.4:56262954-56262973 None:intergenic 35.0%
!! TAAAGTTGGTGACCTATTAC+CGG + chr8.4:56263734-56263753 None:intergenic 35.0%
!! TTGCTTATTTCTACGCTTAC+CGG + chr8.4:56263185-56263204 None:intergenic 35.0%
ACCGATGACACATTCGTATT+GGG - chr8.4:56263603-56263622 MS.gene94055:intron 40.0%
ACTTTGACACCACAATGCAA+TGG - chr8.4:56263454-56263473 MS.gene94055:intron 40.0%
AGGCTGCTAAGAGTTCTATA+TGG - chr8.4:56263845-56263864 MS.gene94055:intron 40.0%
ATTATTACTCTGCTCCTCCA+TGG - chr8.4:56263500-56263519 MS.gene94055:intron 40.0%
CACGAACAATTCGTACTTAG+TGG + chr8.4:56262224-56262243 None:intergenic 40.0%
CACTAAGTACGAATTGTTCG+TGG - chr8.4:56262222-56262241 MS.gene94055:CDS 40.0%
CATACACATAGATTCCAAGG+AGG - chr8.4:56263255-56263274 MS.gene94055:intron 40.0%
GAAAGTGGAATAGAGCATGT+TGG - chr8.4:56263427-56263446 MS.gene94055:intron 40.0%
GACTTATCCATGTTGGAATC+CGG - chr8.4:56263522-56263541 MS.gene94055:intron 40.0%
GGAAGTTCCTCTTAGTGAAT+CGG - chr8.4:56263276-56263295 MS.gene94055:intron 40.0%
GGAATTAAGCCATTGCATTG+TGG + chr8.4:56263466-56263485 None:intergenic 40.0%
GGACTTGACGTTATGTTATC+AGG + chr8.4:56263559-56263578 None:intergenic 40.0%
GGGCCATAGAAAAATTGAAC+TGG - chr8.4:56263321-56263340 MS.gene94055:intron 40.0%
GGTAATAGGTCACCAACTTT+AGG - chr8.4:56263733-56263752 MS.gene94055:intron 40.0%
GTATGTCAACTGACACAGTT+TGG - chr8.4:56262782-56262801 MS.gene94055:CDS 40.0%
TACCGATGACACATTCGTAT+TGG - chr8.4:56263602-56263621 MS.gene94055:intron 40.0%
TCCATTTGGCCAATCCAATT+TGG + chr8.4:56263637-56263656 None:intergenic 40.0%
TTAGCGGCATAACAGTTCTA+TGG + chr8.4:56262655-56262674 None:intergenic 40.0%
TTAGTTGGATCTGCGTTCAA+CGG - chr8.4:56263667-56263686 MS.gene94055:intron 40.0%
TTCCAACATGGATAAGTCCA+TGG + chr8.4:56263520-56263539 None:intergenic 40.0%
TTCCTGAGTGGGATAATTCT+TGG - chr8.4:56262259-56262278 MS.gene94055:CDS 40.0%
TTCTGAATACTCCATTTCCC+CGG + chr8.4:56263410-56263429 None:intergenic 40.0%
! CGAGTAAAACCACGAGTTTT+TGG - chr8.4:56262481-56262500 MS.gene94055:CDS 40.0%
! GCAAAAATTGCCAGAGGTAT+TGG - chr8.4:56263122-56263141 MS.gene94055:intron 40.0%
! GTACCGGTATTGTACATGTT+TGG + chr8.4:56262917-56262936 None:intergenic 40.0%
! GTTAATCCTCTGGTTCCTAA+GGG + chr8.4:56262334-56262353 None:intergenic 40.0%
! GTTTTCGGCACCCAAATATT+CGG + chr8.4:56263802-56263821 None:intergenic 40.0%
! TATGACAGGTACTGCATCAA+GGG + chr8.4:56263239-56263258 None:intergenic 40.0%
! TGTTAATCCTCTGGTTCCTA+AGG + chr8.4:56262335-56262354 None:intergenic 40.0%
! TTTTGCAGAAATGCCTTGGT+TGG + chr8.4:56263108-56263127 None:intergenic 40.0%
!! AGTTTTCAAGAAGCCAGACA+AGG - chr8.4:56263015-56263034 MS.gene94055:intron 40.0%
!! CAATACCGGTACTTTGAAAC+CGG - chr8.4:56262925-56262944 MS.gene94055:intron 40.0%
!! GTTTCTACCGATTCACTAAG+AGG + chr8.4:56263286-56263305 None:intergenic 40.0%
!! TTGTGGATTAGCTTGTTTGC+TGG + chr8.4:56262876-56262895 None:intergenic 40.0%
AAACTATTGCAGCGAGGACA+CGG + chr8.4:56263046-56263065 None:intergenic 45.0%
ACTAAGAGGAACTTCCTCCT+TGG + chr8.4:56263272-56263291 None:intergenic 45.0%
AGGAATGTTCCTATTGGAGC+CGG - chr8.4:56263163-56263182 MS.gene94055:intron 45.0%
ATCTGAGTTCGATTCCTGAG+TGG - chr8.4:56262247-56262266 MS.gene94055:CDS 45.0%
ATTGGGGCTGTATGCCAAAT+TGG - chr8.4:56263620-56263639 MS.gene94055:intron 45.0%
CAACATGGATAAGTCCATGG+AGG + chr8.4:56263517-56263536 None:intergenic 45.0%
CATTCCATCACCTTCCTCTT+CGG - chr8.4:56263690-56263709 MS.gene94055:intron 45.0%
CCCCAATACGAATGTGTCAT+CGG + chr8.4:56263607-56263626 None:intergenic 45.0%
CCGATGACACATTCGTATTG+GGG - chr8.4:56263604-56263623 MS.gene94055:intron 45.0%
CTCCATGGACTTATCCATGT+TGG - chr8.4:56263515-56263534 MS.gene94055:intron 45.0%
GACCAAGAATTATCCCACTC+AGG + chr8.4:56262264-56262283 None:intergenic 45.0%
GGACTCTTCTACTGTCAAAG+AGG - chr8.4:56263342-56263361 MS.gene94055:intron 45.0%
GGCTGTATGCCAAATTGGAT+TGG - chr8.4:56263625-56263644 MS.gene94055:intron 45.0%
GTGGTACTTGTTCCGGTAAT+AGG - chr8.4:56263719-56263738 MS.gene94055:intron 45.0%
TCTACCGGTGCTTTCAATCA+CGG + chr8.4:56262705-56262724 None:intergenic 45.0%
TCTGAGTTCGATTCCTGAGT+GGG - chr8.4:56262248-56262267 MS.gene94055:CDS 45.0%
TGTCTGGTTGACCGAGTAAT+TGG - chr8.4:56262178-56262197 MS.gene94055:CDS 45.0%
TTATCAGGCTTAAATGCCGC+CGG + chr8.4:56263544-56263563 None:intergenic 45.0%
TTATCCATGTTGGAATCCGG+CGG - chr8.4:56263525-56263544 MS.gene94055:intron 45.0%
! GTATGACAGGTACTGCATCA+AGG + chr8.4:56263240-56263259 None:intergenic 45.0%
!! GCCAAATTGGATTGGCCAAA+TGG - chr8.4:56263633-56263652 MS.gene94055:intron 45.0%
CACGCTTTCCTGAAAGGATC+CGG + chr8.4:56264016-56264035 None:intergenic 50.0%
CGGTACTTCTACAGCCATCA+TGG + chr8.4:56263587-56263606 None:intergenic 50.0%
CGTTCCAGTAATCCGGAGTT+CGG + chr8.4:56262307-56262326 None:intergenic 50.0%
GAACTCTTAGCAGCCTCTTC+TGG + chr8.4:56263841-56263860 None:intergenic 50.0%
GCTAGCAGTGGTACTTGTTC+CGG - chr8.4:56263712-56263731 MS.gene94055:intron 50.0%
GGACAGCTGGTGGAGTAATT+AGG - chr8.4:56263143-56263162 MS.gene94055:intron 50.0%
GTCAAGTCCTGCAACCATGA+TGG - chr8.4:56263570-56263589 MS.gene94055:intron 50.0%
GTCTCCAAACTATTGCAGCG+AGG + chr8.4:56263052-56263071 None:intergenic 50.0%
GTGTCCTCGCTGCAATAGTT+TGG - chr8.4:56263045-56263064 MS.gene94055:intron 50.0%
TCTACAGCCATCATGGTTGC+AGG + chr8.4:56263580-56263599 None:intergenic 50.0%
TCTGTGAGAGCTGCTGAATC+CGG - chr8.4:56263388-56263407 MS.gene94055:intron 50.0%
TTACTGGAACGCCTTCCCTT+AGG - chr8.4:56262316-56262335 MS.gene94055:CDS 50.0%
! ATCCTCTGGTTCCTAAGGGA+AGG + chr8.4:56262330-56262349 None:intergenic 50.0%
! CGATCCGTGATTGAAAGCAC+CGG - chr8.4:56262698-56262717 MS.gene94055:CDS 50.0%
! CTATGAGCTGCTTTGGTCAC+CGG + chr8.4:56262947-56262966 None:intergenic 50.0%
!! CTTACGTTTTGGCCGAACTC+CGG - chr8.4:56262292-56262311 MS.gene94055:CDS 50.0%
!! GGTCACCGGTTTCAAAGTAC+CGG + chr8.4:56262933-56262952 None:intergenic 50.0%
AATGCCGCCGGATTCCAACA+TGG + chr8.4:56263532-56263551 None:intergenic 55.0%
AGCAGCTCTCACAGAAGAGC+TGG + chr8.4:56263383-56263402 None:intergenic 55.0%
AGCTGCTGAATCCGGGGAAA+TGG - chr8.4:56263396-56263415 MS.gene94055:intron 55.0%
AGTACCACTGCTAGCCGAAG+AGG + chr8.4:56263707-56263726 None:intergenic 55.0%
CACCAGCTGTCCAATACCTC+TGG + chr8.4:56263135-56263154 None:intergenic 55.0%
CTAGCCGAAGAGGAAGGTGA+TGG + chr8.4:56263697-56263716 None:intergenic 55.0%
CTGTGAGAGCTGCTGAATCC+GGG - chr8.4:56263389-56263408 MS.gene94055:intron 55.0%
TGTGAGAGCTGCTGAATCCG+GGG - chr8.4:56263390-56263409 MS.gene94055:intron 55.0%
TTGGCCGAACTCCGGATTAC+TGG - chr8.4:56262300-56262319 MS.gene94055:CDS 55.0%
!! CAGAGGTATTGGACAGCTGG+TGG - chr8.4:56263133-56263152 MS.gene94055:intron 55.0%
!! CTACGCTTACCGGCTCCAAT+AGG + chr8.4:56263175-56263194 None:intergenic 55.0%
!! GGGAAGGCGTTCCAGTAATC+CGG + chr8.4:56262314-56262333 None:intergenic 55.0%
!! TGCCAGAGGTATTGGACAGC+TGG - chr8.4:56263130-56263149 MS.gene94055:intron 55.0%
CCACTGCTAGCCGAAGAGGA+AGG + chr8.4:56263703-56263722 None:intergenic 60.0%
CCTTCCTCTTCGGCTAGCAG+TGG - chr8.4:56263700-56263719 MS.gene94055:intron 60.0%
CGCCTTCCCTTAGGAACCAG+AGG - chr8.4:56262325-56262344 MS.gene94055:CDS 60.0%
CGGAGCGAGAGAAAGCAGCA+GGG + chr8.4:56263996-56264015 None:intergenic 60.0%
CTCTCGCTCCGGATCCTTTC+AGG - chr8.4:56264005-56264024 MS.gene94055:intron 60.0%
GGACACGGCAGAACCTTGTC+TGG + chr8.4:56263031-56263050 None:intergenic 60.0%
!! CCTGCTGCTTTCTCTCGCTC+CGG - chr8.4:56263994-56264013 MS.gene94055:intron 60.0%
CCGGAGCGAGAGAAAGCAGC+AGG + chr8.4:56263997-56264016 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 56261684 56264038 56261684 ID=MS.gene94055
chr8.4 mRNA 56261684 56264038 56261684 ID=MS.gene94055.t1;Parent=MS.gene94055
chr8.4 exon 56264036 56264038 56264036 ID=MS.gene94055.t1.exon1;Parent=MS.gene94055.t1
chr8.4 CDS 56264036 56264038 56264036 ID=cds.MS.gene94055.t1;Parent=MS.gene94055.t1
chr8.4 exon 56261774 56262904 56261774 ID=MS.gene94055.t1.exon2;Parent=MS.gene94055.t1
chr8.4 CDS 56261774 56262904 56261774 ID=cds.MS.gene94055.t1;Parent=MS.gene94055.t1
chr8.4 exon 56261684 56261695 56261684 ID=MS.gene94055.t1.exon3;Parent=MS.gene94055.t1
chr8.4 CDS 56261684 56261695 56261684 ID=cds.MS.gene94055.t1;Parent=MS.gene94055.t1
Gene Sequence

>MS.gene94055

ATGGTCATGCTTTTCATTTTCCTTTACATCTTTTTTGCACCTTTTTATCTTTCTTATATATTTTTTGGCTTGCACTTTACTTAATGCTAAAGTTTGCATTTTTATACTAAAAAATTAAAAACCCAGATTTTTTTTTTCCTTTCATACTGAATGGATATAGAGGCTATTTATTATTATTCGTATATATATAGTTCTAGGTTGTATATACTTGTATAATTATGAATATTTTGATTTTGTTATTAATATCTATAACTCAAAAATGTTTATATTATAGCTAGGTATATGAAGTTGTTTGATAATTTGTTTTGAAGGTAGTGAGACTTGACTTTTGAGTGTTACTATAGAAAATAAGTGGTAGGGTTCAATTTGAATTATTTTTGTTTGAATCTGGTTTTTTAAGTTGGACTGAACTGTTTCACCAGTAATTGACATGAAAAATGTTAAATTGGACCAAATTAATTGAGGTGTGTTCTGGTTACTGTATCATTGGAATATGTCTGGTTGACCGAGTAATTGGACTCAAATTATTAATGAACTCCACTAAGTACGAATTGTTCGTGGGAATCTGAGTTCGATTCCTGAGTGGGATAATTCTTGGTCAGACTTTACTTACGTTTTGGCCGAACTCCGGATTACTGGAACGCCTTCCCTTAGGAACCAGAGGATTAACACAAAATTAAAATGAAATATGTTAGGCGAAAGAATTTTTTTGACCTTTTGTTATGTTAAGTTCAAAATCGATTGCATTTTAACTTGATTCTTGTTGTCCTATTCTTTAACTGTTTGATTACTTTGCTCGAGTAAAACCACGAGTTTTTGGTATTGTTTAATTTGTGGGTATTTCATGTATAGTTTTGATGTGTAGAAATCAACGTTGTTAAATAGTGGCTATAGCGTAGCAGATTTTGACCAAATTAGTGTTGTTCCACAATACATTATCTAGTACAAAATGTTGTCAAATAGCAGTGCCATAGAACTGTTATGCCGCTAATTTGAAAAAGTCATTATTTTCGGCGATCCGTGATTGAAAGCACCGGTAGAAATGCATACTATCAATGAGTTATAACTTTTGGTCCTAATGCAAGTTGTCTTTTTAATGTATGTCAACTGACACAGTTTGGTACTCAATTGCAGAATGGACTTGAAGAATCAACTAATGCTGATGTTGATGTTCGTATGAATGAAGTTTCCAGCAAACAAGCTAATCCACAAGAAGATGCTAATACTATTCCAAACATGTACAATACCGGTACTTTGAAACCGGTGACCAAAGCAGCTCATAGAACTAATGAACACAAGACTGCCAAAAGAGATACTGACAATCAAGAGAAAGTTTTCAAGAAGCCAGACAAGGTTCTGCCGTGTCCTCGCTGCAATAGTTTGGAGACAAAGTTTTGCTATTTCAACAATTACAATGTTAACCAACCAAGGCATTTCTGCAAAAATTGCCAGAGGTATTGGACAGCTGGTGGAGTAATTAGGAATGTTCCTATTGGAGCCGGTAAGCGTAGAAATAAGCAATCACCTTTGCAGAATTGTCAAGTTCTTGTTACCCTTGATGCAGTACCTGTCATACACATAGATTCCAAGGAGGAAGTTCCTCTTAGTGAATCGGTAGAAACTGTGTTAAATCACAAGGGCCATAGAAAAATTGAACTGGACTCTTCTACTGTCAAAGAGGATATTGAGAACTCTTCCAGCTCTTCTGTGAGAGCTGCTGAATCCGGGGAAATGGAGTATTCAGAAAGTGGAATAGAGCATGTTGGTTTGACTTTGACACCACAATGCAATGGCTTAATTCCTTTACATTCGCTTCATTATTACTCTGCTCCTCCATGGACTTATCCATGTTGGAATCCGGCGGCATTTAAGCCTGATAACATAACGTCAAGTCCTGCAACCATGATGGCTGTAGAAGTACCGATGACACATTCGTATTGGGGCTGTATGCCAAATTGGATTGGCCAAATGGAAGAATTATCGTTAGTTGGATCTGCGTTCAACGGCATTCCATCACCTTCCTCTTCGGCTAGCAGTGGTACTTGTTCCGGTAATAGGTCACCAACTTTAGGAAAACATTGTAGAGATGGAAGTACACAAGAAGATACGATGAAGCCGAATATTTGGGTGCCGAAAACTATCAGAATTAATGATCCAGAAGAGGCTGCTAAGAGTTCTATATGGTCAACCTTGAGAACAAAATCTGAACAGAACAAACCTATTATGAAAGGAAGTGTTTTCAAATCATTTGAACCTAAGTCAAATGTAAGTTCTCGTGATTTAGACGATAATCAAATTCTAAGAGCAAACCCTGCTGCTTTCTCTCGCTCCGGATCCTTTCAGGAAAGCGTGTAA
Protein sequence

>MS.gene94055.t1

MNGLEESTNADVDVRMNEVSSKQANPQEDANTIPNMYNTGTLKPVTKAAHRTNEHKTAKRDTDNQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGVIRNVPIGAGKRRNKQSPLQNCQVLVTLDAVPVIHIDSKEEVPLSESVETVLNHKGHRKIELDSSTVKEDIENSSSSSVRAAESGEMEYSESGIEHVGLTLTPQCNGLIPLHSLHYYSAPPWTYPCWNPAAFKPDNITSSPATMMAVEVPMTHSYWGCMPNWIGQMEELSLVGSAFNGIPSPSSSASSGTCSGNRSPTLGKHCRDGSTQEDTMKPNIWVPKTIRINDPEEAAKSSIWSTLRTKSEQNKPIMKGSVFKSFEPKSNESV