AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94169

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94169.t1 MTR_5g083960 96.429 196 7 0 1 196 1 196 6.75e-143 396
MS.gene94169.t1 MTR_3g094690 62.185 238 45 8 1 195 1 236 1.29e-82 245
MS.gene94169.t1 MTR_3g094690 61.765 238 45 9 1 195 1 235 4.23e-80 238
MS.gene94169.t1 MTR_5g075020 58.190 232 57 7 1 195 1 229 6.29e-70 212
MS.gene94169.t1 MTR_5g075020 58.482 224 54 6 9 195 12 233 5.92e-68 207
MS.gene94169.t1 MTR_5g083230 60.504 119 47 0 34 152 1 119 8.13e-49 156
MS.gene94169.t1 MTR_2g068760 63.063 111 41 0 36 146 10 120 6.61e-48 154
MS.gene94169.t1 MTR_3g071590 67.619 105 34 0 35 139 4 108 9.17e-48 154
MS.gene94169.t1 MTR_4g083680 62.727 110 41 0 29 138 5 114 2.17e-47 153
MS.gene94169.t1 MTR_4g105170 62.385 109 41 0 38 146 10 118 1.33e-44 146
MS.gene94169.t1 MTR_7g033800 60.714 112 44 0 31 142 3 114 2.61e-44 145
MS.gene94169.t1 MTR_2g093310 55.752 113 50 0 38 150 32 144 8.39e-44 145
MS.gene94169.t1 MTR_3g031660 55.645 124 50 1 37 155 5 128 1.48e-43 144
MS.gene94169.t1 MTR_3g077240 59.091 110 45 0 37 146 8 117 8.54e-43 142
MS.gene94169.t1 MTR_6g005070 60.577 104 41 0 36 139 6 109 1.38e-42 140
MS.gene94169.t1 MTR_3g073690 59.813 107 43 0 36 142 6 112 1.92e-42 141
MS.gene94169.t1 MTR_5g017950 60.748 107 42 0 36 142 5 111 3.71e-42 144
MS.gene94169.t1 MTR_4g060950 55.263 114 50 1 38 150 23 136 6.39e-42 140
MS.gene94169.t1 MTR_6g005080 57.009 107 46 0 36 142 7 113 3.97e-41 136
MS.gene94169.t1 MTR_3g071420 59.804 102 41 0 36 137 11 112 2.25e-40 135
MS.gene94169.t1 MTR_3g452660 55.963 109 48 0 36 144 4 112 8.69e-40 137
MS.gene94169.t1 MTR_1g095850 54.955 111 50 0 40 150 73 183 9.01e-40 135
MS.gene94169.t1 MTR_7g074990 62.745 102 37 1 39 139 20 121 1.64e-39 135
MS.gene94169.t1 MTR_5g083010 55.660 106 47 0 36 141 8 113 1.02e-38 131
MS.gene94169.t1 MTR_8g040900 43.590 156 88 0 36 191 4 159 1.22e-38 132
MS.gene94169.t1 MTR_7g096530 53.333 105 48 1 36 139 11 115 2.76e-36 126
MS.gene94169.t1 MTR_7g028905 53.333 105 49 0 40 144 6 110 5.98e-36 122
MS.gene94169.t1 MTR_8g036085 47.794 136 65 3 39 168 23 158 7.31e-35 123
MS.gene94169.t1 MTR_5g093010 46.457 127 65 1 40 166 6 129 2.74e-34 119
MS.gene94169.t1 MTR_8g036105 50.435 115 56 1 39 152 18 132 5.63e-34 120
MS.gene94169.t1 MTR_1g070220 53.465 101 46 1 39 138 15 115 8.06e-34 119
MS.gene94169.t1 MTR_6g027710 49.107 112 56 1 38 148 39 150 2.76e-33 119
MS.gene94169.t1 MTR_7g096610 53.398 103 45 2 38 138 7 108 3.78e-32 115
MS.gene94169.t1 MTR_1g070205 53.922 102 44 2 39 138 12 112 5.36e-32 115
MS.gene94169.t1 MTR_5g080470 50.505 99 48 1 38 135 6 104 4.18e-30 109
MS.gene94169.t1 MTR_8g079660 47.115 104 55 0 39 142 8 111 1.86e-29 110
MS.gene94169.t1 MTR_7g075230 42.405 158 79 5 39 191 12 162 2.16e-28 105
MS.gene94169.t1 MTR_6g027700 42.718 103 58 1 37 138 5 107 3.45e-27 102
MS.gene94169.t1 MTR_8g079620 43.269 104 59 0 39 142 8 111 5.26e-26 100
MS.gene94169.t1 MTR_6g011250 39.806 103 61 1 32 133 2 104 3.80e-25 96.7
MS.gene94169.t1 MTR_8g079580 46.667 105 55 1 39 142 8 112 4.27e-25 97.8
MS.gene94169.t1 MTR_4g107450 37.705 122 76 0 36 157 7 128 3.06e-24 97.1
MS.gene94169.t1 MTR_6g011230 38.235 102 63 0 35 136 7 108 1.54e-23 93.2
MS.gene94169.t1 MTR_6g011200 37.755 98 60 1 40 136 10 107 1.00e-21 89.4
MS.gene94169.t1 MTR_2g100020 39.048 105 62 2 36 139 16 119 9.45e-21 87.4
MS.gene94169.t1 MTR_8g017090 35.780 109 68 2 36 143 9 116 4.38e-20 85.9
MS.gene94169.t1 MTR_5g085390 34.579 107 66 2 34 136 1 107 1.68e-19 83.2
MS.gene94169.t1 MTR_4g099230 35.714 98 62 1 40 136 3 100 3.37e-19 80.5
MS.gene94169.t1 MTR_4g088035 32.955 88 59 0 38 125 5 92 8.00e-14 68.6
MS.gene94169.t1 MTR_8g009730 27.891 147 99 2 40 185 11 151 2.98e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94169.t1 AT2G40470 72.455 167 35 4 1 157 1 166 1.66e-71 216
MS.gene94169.t1 AT2G40470 79.851 134 24 1 27 157 8 141 4.47e-67 204
MS.gene94169.t1 AT2G30340 60.000 165 53 2 1 152 1 165 2.14e-66 205
MS.gene94169.t1 AT2G30340 74.797 123 31 0 30 152 44 166 4.96e-65 201
MS.gene94169.t1 AT2G30130 66.990 103 34 0 37 139 6 108 7.54e-46 150
MS.gene94169.t1 AT1G31320 60.345 116 46 0 36 151 10 125 9.41e-46 149
MS.gene94169.t1 AT5G63090 53.285 137 61 1 37 170 9 145 3.05e-43 143
MS.gene94169.t1 AT5G63090 53.285 137 61 1 37 170 9 145 3.05e-43 143
MS.gene94169.t1 AT5G63090 53.285 137 61 1 37 170 9 145 3.05e-43 143
MS.gene94169.t1 AT5G63090 53.285 137 61 1 37 170 9 145 3.05e-43 143
MS.gene94169.t1 AT3G27650 60.748 107 42 0 36 142 36 142 3.30e-43 142
MS.gene94169.t1 AT5G66870 55.072 138 57 3 36 173 4 136 1.15e-42 145
MS.gene94169.t1 AT1G07900 54.867 113 51 0 38 150 32 144 4.79e-42 140
MS.gene94169.t1 AT1G16530 50.704 142 63 3 23 162 3 139 7.42e-42 139
MS.gene94169.t1 AT2G28500 54.867 113 51 0 38 150 54 166 1.73e-41 140
MS.gene94169.t1 AT2G23660 57.944 107 45 0 36 142 2 108 8.43e-41 140
MS.gene94169.t1 AT2G23660 57.944 107 45 0 36 142 2 108 8.43e-41 140
MS.gene94169.t1 AT2G23660 57.944 107 45 0 36 142 2 108 8.43e-41 140
MS.gene94169.t1 AT1G65620 61.468 109 42 0 35 143 5 113 2.03e-40 136
MS.gene94169.t1 AT1G65620 61.468 109 42 0 35 143 5 113 2.03e-40 136
MS.gene94169.t1 AT1G65620 61.468 109 42 0 35 143 5 113 2.03e-40 136
MS.gene94169.t1 AT1G65620 61.468 109 42 0 35 143 5 113 2.03e-40 136
MS.gene94169.t1 AT1G65620 61.468 109 42 0 35 143 5 113 2.03e-40 136
MS.gene94169.t1 AT3G11090 52.500 120 57 0 36 155 8 127 4.56e-38 129
MS.gene94169.t1 AT3G26660 55.000 100 45 0 40 139 6 105 5.32e-37 125
MS.gene94169.t1 AT3G26620 55.000 100 45 0 40 139 6 105 5.37e-37 125
MS.gene94169.t1 AT2G42430 47.656 128 66 1 29 155 5 132 8.41e-36 125
MS.gene94169.t1 AT3G03760 51.786 112 53 1 38 148 50 161 6.67e-35 124
MS.gene94169.t1 AT4G00210 53.922 102 46 1 39 139 11 112 1.13e-33 119
MS.gene94169.t1 AT2G31310 51.961 102 48 1 38 138 6 107 1.11e-32 116
MS.gene94169.t1 AT4G00220 55.769 104 45 1 42 144 20 123 1.65e-32 117
MS.gene94169.t1 AT3G58190 52.941 102 45 2 39 138 11 111 2.42e-32 116
MS.gene94169.t1 AT5G06080 49.107 112 56 1 38 148 6 117 6.19e-32 114
MS.gene94169.t1 AT2G45420 50.962 104 50 1 42 144 40 143 1.02e-30 113
MS.gene94169.t1 AT2G42440 50.485 103 48 2 38 138 6 107 2.01e-30 112
MS.gene94169.t1 AT2G45410 51.515 99 47 1 42 139 19 117 1.43e-29 108
MS.gene94169.t1 AT3G50510 41.026 117 69 0 37 153 10 126 1.69e-26 100
MS.gene94169.t1 AT3G50510 41.026 117 69 0 37 153 10 126 1.69e-26 100
MS.gene94169.t1 AT3G47870 38.889 108 66 0 36 143 33 140 1.22e-25 101
MS.gene94169.t1 AT1G72980 40.385 104 62 0 36 139 10 113 1.47e-22 90.9
MS.gene94169.t1 AT5G35900 37.500 104 65 0 36 139 2 105 6.12e-22 89.0
MS.gene94169.t1 AT3G13850 33.654 104 69 0 40 143 37 140 9.90e-20 84.3
MS.gene94169.t1 AT1G06280 46.753 77 41 0 40 116 25 101 1.39e-18 80.1
MS.gene94169.t1 AT4G22700 39.216 102 51 4 40 132 6 105 1.29e-15 72.0
MS.gene94169.t1 AT2G19820 33.333 90 59 1 38 126 11 100 4.91e-15 68.9
MS.gene94169.t1 AT5G15060 38.202 89 49 3 27 110 3 90 8.88e-12 60.5
MS.gene94169.t1 AT1G36000 30.108 93 63 2 34 125 4 95 2.11e-11 59.3

Find 32 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAGAAATATGGAGAAAA+AGG 0.233084 5.4:+66477943 None:intergenic
CTTGCAAATTTAATCAAAAT+AGG 0.235336 5.4:+66476898 None:intergenic
TTTCAAAAGGGAAGAATGTT+AGG 0.277293 5.4:-66478042 MS.gene94169:CDS
AGGCTAAGAGATCCAGTTTA+TGG 0.306813 5.4:-66477160 MS.gene94169:CDS
GCATCTGCTCTTTGATTCTC+TGG 0.341032 5.4:+66477214 None:intergenic
GGAAGAATGTTAGGTCCTTC+AGG 0.355019 5.4:-66478033 MS.gene94169:CDS
GGCTCATGAGGAGAGAAATA+TGG 0.368976 5.4:+66477934 None:intergenic
GCACCCATGCATCCATAAAC+TGG 0.381798 5.4:+66477148 None:intergenic
ACTTGAAATTGAGCTATAAC+TGG 0.426496 5.4:+66476931 None:intergenic
CAACAAGTTCAATCATTACT+AGG 0.447623 5.4:-66477109 MS.gene94169:CDS
TAGCAACTTTGAGACGTTGC+TGG 0.449895 5.4:+66477876 None:intergenic
CAACGTCTCAAAGTTGCTAT+TGG 0.452802 5.4:-66477872 MS.gene94169:intron
TAGTTTATGAAGCAAATGTA+AGG 0.466219 5.4:-66477180 MS.gene94169:CDS
TAAATAGAAGAAGGAAGCCT+TGG 0.522625 5.4:+66476974 None:intergenic
GAGATAGGAAAGAAGAGAGA+GGG 0.526552 5.4:-66478075 MS.gene94169:CDS
AGATCCAGTTTATGGATGCA+TGG 0.526865 5.4:-66477152 MS.gene94169:CDS
ATTGATACATCATCTGAAGA+AGG 0.534416 5.4:+66477025 None:intergenic
TTTGAGACGAAGGTGTGCCC+AGG 0.536248 5.4:-66477971 MS.gene94169:CDS
ATGCCTGAATGTCCAAAGAA+AGG 0.541123 5.4:-66478294 None:intergenic
GCAAACTTCTGAGGCTCATG+AGG 0.547685 5.4:+66477922 None:intergenic
TGAGATAGGAAAGAAGAGAG+AGG 0.549797 5.4:-66478076 MS.gene94169:CDS
AATTCATAAATACAAACTCA+TGG 0.552933 5.4:-66477062 MS.gene94169:CDS
GAAATTGAGCTATAACTGGT+AGG 0.562061 5.4:+66476935 None:intergenic
TGTTGTGTGTAAATAGAAGA+AGG 0.566644 5.4:+66476965 None:intergenic
GATCCAGTTTATGGATGCAT+GGG 0.578062 5.4:-66477151 MS.gene94169:CDS
TGGACAGAAGCAAACTTCTG+AGG 0.589514 5.4:+66477913 None:intergenic
AAAAGCTTGCATGCAGCACA+AGG 0.594669 5.4:+66477991 None:intergenic
GCATGCAGCACAAGGAGTAG+TGG 0.596320 5.4:+66477999 None:intergenic
GTGGTGTTTAGTGTTCCTGA+AGG 0.633917 5.4:+66478018 None:intergenic
CACCTTCAACATCACTACCA+AGG 0.661627 5.4:-66476991 MS.gene94169:CDS
AGCCTTGGTAGTGATGTTGA+AGG 0.670441 5.4:+66476989 None:intergenic
CTTGGTAGTGATGTTGAAGG+TGG 0.715413 5.4:+66476992 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAAAAAATTGAG+AGG + chr5.4:66477744-66477763 None:intergenic 10.0%
!! ACTAATTCATATATATTATA+TGG - chr5.4:66476981-66477000 MS.gene94169:CDS 10.0%
!! TTAAAAAATATTCTAATTAG+TGG - chr5.4:66477670-66477689 MS.gene94169:intron 10.0%
!!! AAATTGATAACAAAAAATTT+AGG - chr5.4:66477472-66477491 MS.gene94169:intron 10.0%
!!! AATTGATAACAAAAAATTTA+GGG - chr5.4:66477473-66477492 MS.gene94169:intron 10.0%
!!! TAAACAACATTTTTTTTAAT+CGG + chr5.4:66477559-66477578 None:intergenic 10.0%
!! ATATGCTTTAATATCTATAT+AGG - chr5.4:66477080-66477099 MS.gene94169:CDS 15.0%
!! ATATTTGTAATAATGAACTA+AGG + chr5.4:66477362-66477381 None:intergenic 15.0%
!! TAATATGTTTGTGTTTAATT+AGG - chr5.4:66477951-66477970 MS.gene94169:CDS 15.0%
!! TATGCTTTAATATCTATATA+GGG - chr5.4:66477081-66477100 MS.gene94169:CDS 15.0%
!!! AAATAATTTGTTATTTAGAG+GGG + chr5.4:66477845-66477864 None:intergenic 15.0%
!!! ACAAATAATTTGTTATTTAG+AGG + chr5.4:66477847-66477866 None:intergenic 15.0%
!!! CAAATAATTTGTTATTTAGA+GGG + chr5.4:66477846-66477865 None:intergenic 15.0%
!! AATTCATAAATACAAACTCA+TGG - chr5.4:66478131-66478150 MS.gene94169:intron 20.0%
!! ATGCTTTAATATCTATATAG+GGG - chr5.4:66477082-66477101 MS.gene94169:CDS 20.0%
!! ATGGATATACATTATATAAG+AGG - chr5.4:66477434-66477453 MS.gene94169:intron 20.0%
!! TATACATTATATAAGAGGTT+TGG - chr5.4:66477439-66477458 MS.gene94169:intron 20.0%
!! TTGTAAAAGTCCTAAATTAT+TGG + chr5.4:66477523-66477542 None:intergenic 20.0%
!!! ATTACAAATTTTTGACACAT+AGG + chr5.4:66476951-66476970 None:intergenic 20.0%
!!! TTACAAATTTTTGACACATA+GGG + chr5.4:66476950-66476969 None:intergenic 20.0%
!!! TTGATTTTATTTTAAGTCGA+TGG - chr5.4:66477415-66477434 MS.gene94169:intron 20.0%
! AAAAGTCCTAAATTATTGGT+CGG + chr5.4:66477519-66477538 None:intergenic 25.0%
! TAGTTTATGAAGCAAATGTA+AGG - chr5.4:66478013-66478032 MS.gene94169:CDS 25.0%
! TATGTTTGTGTTTAATTAGG+AGG - chr5.4:66477954-66477973 MS.gene94169:CDS 25.0%
! TGCTTTAATATCTATATAGG+GGG - chr5.4:66477083-66477102 MS.gene94169:CDS 25.0%
!! AGTATTTTCTTACCTTTCTT+TGG + chr5.4:66476914-66476933 None:intergenic 25.0%
!!! AAATGGATTACTAAACAATG+TGG - chr5.4:66477629-66477648 MS.gene94169:intron 25.0%
!!! AATGGATTACTAAACAATGT+GGG - chr5.4:66477630-66477649 MS.gene94169:intron 25.0%
!!! GGTGATGATTTTTTTCAAAA+GGG - chr5.4:66477139-66477158 MS.gene94169:CDS 25.0%
ACTAAAATTCCCACATACAT+AGG - chr5.4:66477583-66477602 MS.gene94169:intron 30.0%
ACTTGAAATTGAGCTATAAC+TGG + chr5.4:66478265-66478284 None:intergenic 30.0%
ATATACCAAGTTAACCTCAA+AGG + chr5.4:66477697-66477716 None:intergenic 30.0%
ATATCGTCATGATCTAATTG+TGG + chr5.4:66477810-66477829 None:intergenic 30.0%
ATTCAAGTAGAATGCACATA+AGG + chr5.4:66477881-66477900 None:intergenic 30.0%
ATTGATACATCATCTGAAGA+AGG + chr5.4:66478171-66478190 None:intergenic 30.0%
CAACAAGTTCAATCATTACT+AGG - chr5.4:66478084-66478103 MS.gene94169:CDS 30.0%
CATATATTGATCAGTTCATG+AGG - chr5.4:66477783-66477802 MS.gene94169:intron 30.0%
CTAAAATTCCCACATACATA+GGG - chr5.4:66477584-66477603 MS.gene94169:intron 30.0%
CTCATGAACTGATCAATATA+TGG + chr5.4:66477785-66477804 None:intergenic 30.0%
TGTTGTGTGTAAATAGAAGA+AGG + chr5.4:66478231-66478250 None:intergenic 30.0%
TTTCAAAAGGGAAGAATGTT+AGG - chr5.4:66477151-66477170 MS.gene94169:CDS 30.0%
!!! GGGTGATGATTTTTTTCAAA+AGG - chr5.4:66477138-66477157 MS.gene94169:CDS 30.0%
GAAATTGAGCTATAACTGGT+AGG + chr5.4:66478261-66478280 None:intergenic 35.0%
GATTTGCCGACCAATAATTT+AGG - chr5.4:66477510-66477529 MS.gene94169:intron 35.0%
GGAGAGAAATATGGAGAAAA+AGG + chr5.4:66477253-66477272 None:intergenic 35.0%
TAAATAGAAGAAGGAAGCCT+TGG + chr5.4:66478222-66478241 None:intergenic 35.0%
! TTCTAATTAGTGGACCTTTG+AGG - chr5.4:66477680-66477699 MS.gene94169:intron 35.0%
!!! GGGAGATTTTTTGATGAGAT+AGG - chr5.4:66477103-66477122 MS.gene94169:CDS 35.0%
AGATCCAGTTTATGGATGCA+TGG - chr5.4:66478041-66478060 MS.gene94169:CDS 40.0%
AGGCTAAGAGATCCAGTTTA+TGG - chr5.4:66478033-66478052 MS.gene94169:CDS 40.0%
ATGGAGAAAAAGGACATTCC+TGG + chr5.4:66477243-66477262 None:intergenic 40.0%
CAACGTCTCAAAGTTGCTAT+TGG - chr5.4:66477321-66477340 MS.gene94169:intron 40.0%
GAGATAGGAAAGAAGAGAGA+GGG - chr5.4:66477118-66477137 MS.gene94169:CDS 40.0%
GATCCAGTTTATGGATGCAT+GGG - chr5.4:66478042-66478061 MS.gene94169:CDS 40.0%
GGAGAGTCATAGTTGCTAAA+TGG - chr5.4:66477612-66477631 MS.gene94169:intron 40.0%
TCCTTAGACCCTATGTATGT+GGG + chr5.4:66477595-66477614 None:intergenic 40.0%
TGAGATAGGAAAGAAGAGAG+AGG - chr5.4:66477117-66477136 MS.gene94169:CDS 40.0%
TGGAGAAAAAGGACATTCCT+GGG + chr5.4:66477242-66477261 None:intergenic 40.0%
! GCTTCTGTCCACAAAGTTTT+TGG - chr5.4:66477292-66477311 MS.gene94169:intron 40.0%
AAAAGCTTGCATGCAGCACA+AGG + chr5.4:66477205-66477224 None:intergenic 45.0%
CACCTTCAACATCACTACCA+AGG - chr5.4:66478202-66478221 MS.gene94169:intron 45.0%
CTCCTTAGACCCTATGTATG+TGG + chr5.4:66477596-66477615 None:intergenic 45.0%
GCATCTGCTCTTTGATTCTC+TGG + chr5.4:66477982-66478001 None:intergenic 45.0%
GGAAGAATGTTAGGTCCTTC+AGG - chr5.4:66477160-66477179 MS.gene94169:CDS 45.0%
GGCTCATGAGGAGAGAAATA+TGG + chr5.4:66477262-66477281 None:intergenic 45.0%
GTGGTGTTTAGTGTTCCTGA+AGG + chr5.4:66477178-66477197 None:intergenic 45.0%
TCCCACATACATAGGGTCTA+AGG - chr5.4:66477591-66477610 MS.gene94169:intron 45.0%
TGCTGGCACCAAAAACTTTG+TGG + chr5.4:66477303-66477322 None:intergenic 45.0%
TGGACAGAAGCAAACTTCTG+AGG + chr5.4:66477283-66477302 None:intergenic 45.0%
!! AGCCTTGGTAGTGATGTTGA+AGG + chr5.4:66478207-66478226 None:intergenic 45.0%
!! CTTGGTAGTGATGTTGAAGG+TGG + chr5.4:66478204-66478223 None:intergenic 45.0%
!! GTGGACCTTTGAGGTTAACT+TGG - chr5.4:66477689-66477708 MS.gene94169:intron 45.0%
!! TAGCAACTTTGAGACGTTGC+TGG + chr5.4:66477320-66477339 None:intergenic 45.0%
!!! CATGCAAGCTTTTGAGACGA+AGG - chr5.4:66477212-66477231 MS.gene94169:CDS 45.0%
!!! TAATTAGAATATTTTTTAAA+AGG + chr5.4:66477669-66477688 None:intergenic 5.0%
GCACCCATGCATCCATAAAC+TGG + chr5.4:66478048-66478067 None:intergenic 50.0%
!! GCAAACTTCTGAGGCTCATG+AGG + chr5.4:66477274-66477293 None:intergenic 50.0%
GCATGCAGCACAAGGAGTAG+TGG + chr5.4:66477197-66477216 None:intergenic 55.0%
! TTTGAGACGAAGGTGTGCCC+AGG - chr5.4:66477222-66477241 MS.gene94169:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 66476907 66478308 66476907 ID=MS.gene94169
chr5.4 mRNA 66476907 66478308 66476907 ID=MS.gene94169.t1;Parent=MS.gene94169
chr5.4 exon 66478295 66478308 66478295 ID=MS.gene94169.t1.exon1;Parent=MS.gene94169.t1
chr5.4 CDS 66478295 66478308 66478295 ID=cds.MS.gene94169.t1;Parent=MS.gene94169.t1
chr5.4 exon 66477873 66478113 66477873 ID=MS.gene94169.t1.exon2;Parent=MS.gene94169.t1
chr5.4 CDS 66477873 66478113 66477873 ID=cds.MS.gene94169.t1;Parent=MS.gene94169.t1
chr5.4 exon 66476907 66477242 66476907 ID=MS.gene94169.t1.exon3;Parent=MS.gene94169.t1
chr5.4 CDS 66476907 66477242 66476907 ID=cds.MS.gene94169.t1;Parent=MS.gene94169.t1
Gene Sequence

>MS.gene94169

ATGTCCAAAGAAAGGTAAGAAAATACTTTCAAAGTATATTCCCTATGTGTCAAAAATTTGTAATTAGTATTTCTACTAATTCATATATATTATATGGTAACTAAACTTTTCAAGCATACTTTTTGTACTCTTAAAAATAATTTTGCATAAATTTGTTAATTACTAAATTTCATATATGCTTTAATATCTATATAGGGGGAGATTTTTTGATGAGATAGGAAAGAAGAGAGAGGGTGATGATTTTTTTCAAAAGGGAAGAATGTTAGGTCCTTCAGGAACACTAAACACCACTACTCCTTGTGCTGCATGCAAGCTTTTGAGACGAAGGTGTGCCCAGGAATGTCCTTTTTCTCCATATTTCTCTCCTCATGAGCCTCAGAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGTTGCTATTGGTATACACATATAAAACCTTAGTTCATTATTACAAATATTTTAGTATAATTTAGTGATAACTGATTTAGCTGTTGATTTTATTTTAAGTCGATGGATATACATTATATAAGAGGTTTGGTGACTTTTACAAATTGATAACAAAAAATTTAGGGTTGATTTAGAGATCGATTTGCCGACCAATAATTTAGGACTTTTACAAATTGATCTCTAAACCGATTAAAAAAAATGTTGTTTAATGCACTAAAATTCCCACATACATAGGGTCTAAGGAGAGTCATAGTTGCTAAATGGATTACTAAACAATGTGGGTTTTTAATATGAACCTTTTAAAAAATATTCTAATTAGTGGACCTTTGAGGTTAACTTGGTATATATCAAGTTAATATTTTTTTTACTTCCTCTCAATTTTTTTTTTTATTTTTTTTATAAAACTTAATACCATATATTGATCAGTTCATGAGGTCCACAATTAGATCATGACGATATTAGAGAATAGAGCCCCTCTAAATAACAAATTATTTGTATATATCTAAACCTTATGTGCATTCTACTTGAATACAAAGCAACGATGATGAATTTTTATATGTAAGAGAAAAAGTAACATTTGTAATATGTTTGTGTTTAATTAGGAGGTACCAGAGAATCAAAGAGCAGATGCAGCAAATAGTTTAGTTTATGAAGCAAATGTAAGGCTAAGAGATCCAGTTTATGGATGCATGGGTGCAATTTCATCTTTGCAACAACAAGTTCAATCATTACTAGGTGAACTCAATGCTATAAGAGAAGAAATTCATAAATACAAACTCATGGAAGCTAACATGCTTCCTTCTTCAGATGATGTATCAATTGCTACTCTACCACCTTCAACATCACTACCAAGGCTTCCTTCTTCTATTTACACACAACAAACAAATCCTACCAGTTATAGCTCAATTTCAAGTGATCATATTTCCTATTTTGATTAA
Protein sequence

>MS.gene94169.t1

MSKERGRFFDEIGKKREGDDFFQKGRMLGPSGTLNTTTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISSLQQQVQSLLGELNAIREEIHKYKLMEANMLPSSDDVSIATLPPSTSLPRLPSSIYTQQTNPTSYSSISSDHISYFD