Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94212.t1 | XP_003616690.1 | 98.2 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 1.70E-86 | 328.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94212.t1 | Q8LBW3 | 88.7 | 115 | 13 | 0 | 3 | 117 | 5 | 119 | 9.6e-54 | 211.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94212.t1 | G7K288 | 98.2 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 1.2e-86 | 328.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene94212.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94212.t1 | MTR_5g083230 | 98.204 | 167 | 2 | 1 | 1 | 166 | 1 | 167 | 4.81e-122 | 340 |
| MS.gene94212.t1 | MTR_3g071590 | 73.171 | 164 | 35 | 4 | 1 | 160 | 1 | 159 | 1.95e-80 | 235 |
| MS.gene94212.t1 | MTR_3g031660 | 65.909 | 176 | 44 | 5 | 1 | 160 | 1 | 176 | 9.54e-73 | 216 |
| MS.gene94212.t1 | MTR_4g083680 | 56.098 | 164 | 61 | 1 | 2 | 165 | 11 | 163 | 1.57e-58 | 180 |
| MS.gene94212.t1 | MTR_2g068760 | 76.364 | 110 | 26 | 0 | 2 | 111 | 9 | 118 | 1.84e-58 | 179 |
| MS.gene94212.t1 | MTR_2g093310 | 62.832 | 113 | 42 | 0 | 5 | 117 | 32 | 144 | 9.00e-51 | 161 |
| MS.gene94212.t1 | MTR_7g033800 | 53.020 | 149 | 66 | 1 | 4 | 148 | 9 | 157 | 1.96e-50 | 160 |
| MS.gene94212.t1 | MTR_4g105170 | 52.532 | 158 | 58 | 1 | 4 | 144 | 9 | 166 | 2.16e-50 | 160 |
| MS.gene94212.t1 | MTR_3g077240 | 71.154 | 104 | 30 | 0 | 4 | 107 | 8 | 111 | 4.15e-50 | 159 |
| MS.gene94212.t1 | MTR_4g060950 | 64.035 | 114 | 40 | 1 | 5 | 117 | 23 | 136 | 1.72e-49 | 158 |
| MS.gene94212.t1 | MTR_5g083960 | 60.504 | 119 | 47 | 0 | 1 | 119 | 34 | 152 | 1.03e-48 | 156 |
| MS.gene94212.t1 | MTR_6g005070 | 57.377 | 122 | 52 | 0 | 4 | 125 | 7 | 128 | 1.50e-48 | 154 |
| MS.gene94212.t1 | MTR_1g095850 | 64.865 | 111 | 39 | 0 | 7 | 117 | 73 | 183 | 5.31e-48 | 155 |
| MS.gene94212.t1 | MTR_3g094690 | 69.903 | 103 | 31 | 0 | 5 | 107 | 46 | 148 | 1.26e-47 | 154 |
| MS.gene94212.t1 | MTR_6g005080 | 49.315 | 146 | 63 | 1 | 4 | 149 | 8 | 142 | 2.47e-47 | 150 |
| MS.gene94212.t1 | MTR_3g073690 | 61.207 | 116 | 44 | 1 | 5 | 120 | 8 | 122 | 1.92e-46 | 150 |
| MS.gene94212.t1 | MTR_3g094690 | 68.932 | 103 | 31 | 1 | 5 | 107 | 46 | 147 | 4.83e-45 | 148 |
| MS.gene94212.t1 | MTR_5g017950 | 59.200 | 125 | 50 | 1 | 4 | 127 | 6 | 130 | 6.18e-45 | 150 |
| MS.gene94212.t1 | MTR_3g071420 | 67.000 | 100 | 33 | 0 | 4 | 103 | 12 | 111 | 6.07e-44 | 144 |
| MS.gene94212.t1 | MTR_3g452660 | 62.136 | 103 | 39 | 0 | 4 | 106 | 5 | 107 | 6.72e-44 | 147 |
| MS.gene94212.t1 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 42 | 144 | 2.19e-43 | 144 |
| MS.gene94212.t1 | MTR_5g075020 | 68.932 | 103 | 32 | 0 | 5 | 107 | 46 | 148 | 3.93e-43 | 143 |
| MS.gene94212.t1 | MTR_5g083010 | 63.366 | 101 | 37 | 0 | 3 | 103 | 8 | 108 | 6.01e-42 | 138 |
| MS.gene94212.t1 | MTR_8g040900 | 63.551 | 107 | 39 | 0 | 4 | 110 | 5 | 111 | 1.61e-41 | 139 |
| MS.gene94212.t1 | MTR_5g093010 | 52.294 | 109 | 52 | 0 | 7 | 115 | 6 | 114 | 9.34e-39 | 129 |
| MS.gene94212.t1 | MTR_7g096530 | 56.604 | 106 | 45 | 1 | 2 | 106 | 10 | 115 | 1.87e-38 | 130 |
| MS.gene94212.t1 | MTR_1g070220 | 59.406 | 101 | 40 | 1 | 6 | 105 | 15 | 115 | 1.06e-37 | 128 |
| MS.gene94212.t1 | MTR_8g036105 | 52.846 | 123 | 54 | 2 | 3 | 121 | 15 | 137 | 1.59e-37 | 128 |
| MS.gene94212.t1 | MTR_7g028905 | 50.450 | 111 | 55 | 0 | 5 | 115 | 4 | 114 | 4.64e-37 | 124 |
| MS.gene94212.t1 | MTR_7g075230 | 45.455 | 165 | 78 | 5 | 3 | 164 | 9 | 164 | 9.13e-37 | 125 |
| MS.gene94212.t1 | MTR_8g036085 | 55.882 | 102 | 44 | 1 | 6 | 106 | 23 | 124 | 8.04e-36 | 124 |
| MS.gene94212.t1 | MTR_7g074990 | 57.843 | 102 | 42 | 1 | 6 | 106 | 20 | 121 | 9.11e-36 | 124 |
| MS.gene94212.t1 | MTR_7g096610 | 47.143 | 140 | 62 | 4 | 2 | 130 | 4 | 142 | 1.17e-34 | 121 |
| MS.gene94212.t1 | MTR_5g080470 | 42.177 | 147 | 72 | 3 | 2 | 140 | 3 | 144 | 2.52e-33 | 117 |
| MS.gene94212.t1 | MTR_1g070205 | 56.701 | 97 | 39 | 2 | 6 | 100 | 12 | 107 | 5.86e-33 | 117 |
| MS.gene94212.t1 | MTR_6g027710 | 49.038 | 104 | 52 | 1 | 5 | 107 | 39 | 142 | 4.52e-32 | 114 |
| MS.gene94212.t1 | MTR_8g079660 | 48.515 | 101 | 52 | 0 | 6 | 106 | 8 | 108 | 1.62e-30 | 111 |
| MS.gene94212.t1 | MTR_8g079580 | 48.544 | 103 | 52 | 1 | 6 | 107 | 8 | 110 | 6.73e-29 | 106 |
| MS.gene94212.t1 | MTR_8g079620 | 45.545 | 101 | 55 | 0 | 6 | 106 | 8 | 108 | 1.55e-28 | 105 |
| MS.gene94212.t1 | MTR_6g027700 | 46.535 | 101 | 53 | 1 | 6 | 105 | 7 | 107 | 1.97e-28 | 104 |
| MS.gene94212.t1 | MTR_6g011250 | 40.351 | 114 | 67 | 1 | 1 | 113 | 4 | 117 | 4.08e-27 | 100 |
| MS.gene94212.t1 | MTR_4g107450 | 43.220 | 118 | 66 | 1 | 2 | 118 | 6 | 123 | 2.53e-24 | 96.3 |
| MS.gene94212.t1 | MTR_6g011230 | 41.935 | 93 | 54 | 0 | 7 | 99 | 12 | 104 | 2.97e-24 | 94.0 |
| MS.gene94212.t1 | MTR_6g011200 | 44.578 | 83 | 45 | 1 | 4 | 85 | 7 | 89 | 4.95e-23 | 92.0 |
| MS.gene94212.t1 | MTR_2g100020 | 35.238 | 105 | 68 | 0 | 2 | 106 | 15 | 119 | 4.88e-21 | 87.0 |
| MS.gene94212.t1 | MTR_4g099230 | 40.426 | 94 | 51 | 2 | 7 | 95 | 3 | 96 | 9.07e-21 | 83.6 |
| MS.gene94212.t1 | MTR_8g017090 | 31.159 | 138 | 95 | 0 | 7 | 144 | 13 | 150 | 9.28e-20 | 84.0 |
| MS.gene94212.t1 | MTR_4g088035 | 39.080 | 87 | 53 | 0 | 7 | 93 | 7 | 93 | 2.99e-19 | 82.0 |
| MS.gene94212.t1 | MTR_5g085390 | 39.759 | 83 | 49 | 1 | 4 | 85 | 7 | 89 | 6.76e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94212.t1 | AT2G30130 | 78.947 | 133 | 24 | 1 | 3 | 131 | 5 | 137 | 8.42e-74 | 219 |
| MS.gene94212.t1 | AT1G31320 | 70.940 | 117 | 34 | 0 | 2 | 118 | 9 | 125 | 3.14e-52 | 164 |
| MS.gene94212.t1 | AT2G28500 | 55.714 | 140 | 61 | 1 | 5 | 144 | 54 | 192 | 7.67e-52 | 165 |
| MS.gene94212.t1 | AT1G07900 | 59.091 | 132 | 53 | 1 | 5 | 136 | 32 | 162 | 2.57e-51 | 162 |
| MS.gene94212.t1 | AT1G16530 | 70.093 | 107 | 31 | 1 | 5 | 110 | 13 | 119 | 1.47e-50 | 160 |
| MS.gene94212.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
| MS.gene94212.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
| MS.gene94212.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
| MS.gene94212.t1 | AT5G63090 | 70.874 | 103 | 30 | 0 | 4 | 106 | 9 | 111 | 1.37e-49 | 158 |
| MS.gene94212.t1 | AT3G27650 | 67.308 | 104 | 34 | 0 | 4 | 107 | 37 | 140 | 1.13e-48 | 155 |
| MS.gene94212.t1 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 51 | 169 | 3.77e-47 | 154 |
| MS.gene94212.t1 | AT2G30340 | 60.504 | 119 | 47 | 0 | 5 | 123 | 52 | 170 | 4.60e-47 | 154 |
| MS.gene94212.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
| MS.gene94212.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
| MS.gene94212.t1 | AT2G23660 | 57.265 | 117 | 49 | 1 | 4 | 120 | 3 | 118 | 1.87e-45 | 151 |
| MS.gene94212.t1 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 19 | 121 | 3.51e-45 | 147 |
| MS.gene94212.t1 | AT2G40470 | 70.874 | 103 | 30 | 0 | 5 | 107 | 44 | 146 | 5.36e-45 | 147 |
| MS.gene94212.t1 | AT5G66870 | 64.078 | 103 | 37 | 0 | 4 | 106 | 5 | 107 | 6.80e-44 | 147 |
| MS.gene94212.t1 | AT3G26660 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 1.55e-43 | 140 |
| MS.gene94212.t1 | AT3G26620 | 59.091 | 110 | 45 | 0 | 7 | 116 | 6 | 115 | 1.98e-43 | 140 |
| MS.gene94212.t1 | AT3G11090 | 58.621 | 116 | 47 | 1 | 4 | 118 | 9 | 124 | 1.22e-41 | 137 |
| MS.gene94212.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
| MS.gene94212.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
| MS.gene94212.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
| MS.gene94212.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
| MS.gene94212.t1 | AT1G65620 | 66.019 | 103 | 35 | 0 | 4 | 106 | 7 | 109 | 3.67e-41 | 137 |
| MS.gene94212.t1 | AT4G00210 | 45.283 | 159 | 70 | 3 | 2 | 159 | 7 | 149 | 2.20e-37 | 128 |
| MS.gene94212.t1 | AT2G42430 | 56.604 | 106 | 45 | 1 | 2 | 106 | 11 | 116 | 5.72e-37 | 127 |
| MS.gene94212.t1 | AT2G45410 | 50.388 | 129 | 60 | 2 | 9 | 133 | 19 | 147 | 1.85e-36 | 125 |
| MS.gene94212.t1 | AT3G03760 | 54.808 | 104 | 46 | 1 | 5 | 107 | 50 | 153 | 3.05e-36 | 126 |
| MS.gene94212.t1 | AT2G42440 | 47.143 | 140 | 64 | 4 | 2 | 139 | 3 | 134 | 4.65e-35 | 122 |
| MS.gene94212.t1 | AT2G31310 | 45.455 | 143 | 66 | 4 | 1 | 132 | 1 | 142 | 7.61e-35 | 120 |
| MS.gene94212.t1 | AT2G45420 | 52.885 | 104 | 48 | 1 | 9 | 111 | 40 | 143 | 7.00e-34 | 120 |
| MS.gene94212.t1 | AT4G00220 | 53.846 | 104 | 47 | 1 | 9 | 111 | 20 | 123 | 1.38e-33 | 118 |
| MS.gene94212.t1 | AT3G58190 | 48.031 | 127 | 58 | 3 | 6 | 130 | 11 | 131 | 2.57e-33 | 117 |
| MS.gene94212.t1 | AT5G06080 | 52.727 | 110 | 46 | 2 | 5 | 113 | 6 | 110 | 9.65e-32 | 112 |
| MS.gene94212.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.65e-30 | 109 |
| MS.gene94212.t1 | AT3G50510 | 47.573 | 103 | 54 | 0 | 4 | 106 | 10 | 112 | 2.65e-30 | 109 |
| MS.gene94212.t1 | AT5G35900 | 42.718 | 103 | 59 | 0 | 7 | 109 | 6 | 108 | 1.97e-25 | 97.1 |
| MS.gene94212.t1 | AT1G72980 | 39.130 | 115 | 69 | 1 | 2 | 115 | 9 | 123 | 1.78e-23 | 92.4 |
| MS.gene94212.t1 | AT3G47870 | 36.190 | 105 | 67 | 0 | 2 | 106 | 32 | 136 | 3.74e-23 | 93.6 |
| MS.gene94212.t1 | AT3G13850 | 38.947 | 95 | 58 | 0 | 7 | 101 | 37 | 131 | 8.90e-22 | 89.0 |
| MS.gene94212.t1 | AT1G06280 | 45.455 | 77 | 42 | 0 | 7 | 83 | 25 | 101 | 1.96e-19 | 81.6 |
| MS.gene94212.t1 | AT2G19820 | 37.079 | 89 | 55 | 1 | 5 | 92 | 11 | 99 | 1.30e-16 | 72.0 |
| MS.gene94212.t1 | AT4G22700 | 36.634 | 101 | 62 | 2 | 7 | 106 | 6 | 105 | 8.66e-16 | 71.6 |
| MS.gene94212.t1 | AT5G15060 | 43.243 | 74 | 38 | 2 | 7 | 77 | 18 | 90 | 5.16e-14 | 65.9 |
| MS.gene94212.t1 | AT1G36000 | 29.348 | 92 | 65 | 0 | 1 | 92 | 4 | 95 | 8.00e-13 | 62.0 |
| MS.gene94212.t1 | AT2G19510 | 27.174 | 92 | 67 | 0 | 1 | 92 | 4 | 95 | 7.58e-11 | 57.0 |
Find 21 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCTGCTCTTTGGTGAAT+TGG | 0.247897 | 5.4:-65992897 | None:intergenic |
| CTCACTCAATACCTTAATTA+TGG | 0.252400 | 5.4:+65993137 | MS.gene94212:CDS |
| TGTGAACTATGGCAAACTTT+TGG | 0.274301 | 5.4:-65992039 | None:intergenic |
| CATCTGCTCTTTGGTGAATT+GGG | 0.326240 | 5.4:-65992896 | None:intergenic |
| TAGAAGAAGAACCATAATTA+AGG | 0.338211 | 5.4:-65993148 | None:intergenic |
| TGTTCACTGCATCTGCTCTT+TGG | 0.348086 | 5.4:-65992905 | None:intergenic |
| TATAGTAAGATTTCTGATCT+TGG | 0.371111 | 5.4:-65993103 | None:intergenic |
| GCTCCAACACAGCCATAAAC+TGG | 0.374722 | 5.4:-65992963 | None:intergenic |
| TAATATGTATGGACATGATA+TGG | 0.378652 | 5.4:+65993205 | MS.gene94212:CDS |
| AGAGTGAGGGATCCAGTTTA+TGG | 0.403662 | 5.4:+65992951 | MS.gene94212:CDS |
| TCTTGGTTGATTTGTGGTGT+TGG | 0.412347 | 5.4:-65993086 | None:intergenic |
| GGTTCATGAGAAGGAAAATA+AGG | 0.413213 | 5.4:-65992016 | None:intergenic |
| CAATGTTAGCAAAATGTTGC+AGG | 0.415314 | 5.4:+65992078 | MS.gene94212:CDS |
| CTTAAGAGAGATAATATGTA+TGG | 0.442326 | 5.4:+65993194 | MS.gene94212:CDS |
| TTCTGATCTTGGTTGATTTG+TGG | 0.443495 | 5.4:-65993092 | None:intergenic |
| GATCCAGTTTATGGCTGTGT+TGG | 0.485932 | 5.4:+65992960 | MS.gene94212:CDS |
| AAAGTTTGCCATAGTTCACA+AGG | 0.602163 | 5.4:+65992042 | MS.gene94212:CDS |
| AGAAGGAAAATAAGGAGCAA+AGG | 0.607624 | 5.4:-65992008 | None:intergenic |
| ATGAAGCAAATGCAAGAGTG+AGG | 0.619290 | 5.4:+65992937 | MS.gene94212:CDS |
| AGAAGCTTGCATGAAGCACA+TGG | 0.628381 | 5.4:-65991959 | None:intergenic |
| TGAAGCAAATGCAAGAGTGA+GGG | 0.632506 | 5.4:+65992938 | MS.gene94212:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACTAATCATTAGAA+AGG | - | chr5.4:65992581-65992600 | None:intergenic | 15.0% |
| !! | AGTTTGTGAATAAAATATTT+GGG | + | chr5.4:65992270-65992289 | MS.gene94212:intron | 15.0% |
| !! | TAATAGTAAACAACTAAAAA+AGG | - | chr5.4:65992428-65992447 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTGTTTGAATC+AGG | + | chr5.4:65992869-65992888 | MS.gene94212:intron | 15.0% |
| !!! | TAGTTTGTGAATAAAATATT+TGG | + | chr5.4:65992269-65992288 | MS.gene94212:intron | 15.0% |
| !!! | TTTTTTATGTTTCTTACTTT+AGG | - | chr5.4:65992370-65992389 | None:intergenic | 15.0% |
| !! | AAACACTTAAAAAAAGTAAG+AGG | - | chr5.4:65992106-65992125 | None:intergenic | 20.0% |
| !! | TAAGTGTTTATTATTGTTCA+AGG | + | chr5.4:65992623-65992642 | MS.gene94212:intron | 20.0% |
| !! | TGTTTACTATTATAGTTATG+AGG | + | chr5.4:65992436-65992455 | MS.gene94212:intron | 20.0% |
| !!! | TACTTTCTTTGATGATTAAA+GGG | + | chr5.4:65992130-65992149 | MS.gene94212:intron | 20.0% |
| !!! | TGTACTTATGTTTTTATTCA+AGG | + | chr5.4:65992228-65992247 | MS.gene94212:intron | 20.0% |
| !!! | TTACTTTCTTTGATGATTAA+AGG | + | chr5.4:65992129-65992148 | MS.gene94212:intron | 20.0% |
| !!! | TTTTTTAATGCGGAAAATTA+GGG | - | chr5.4:65992701-65992720 | None:intergenic | 20.0% |
| !!! | TTTTTTTAATGCGGAAAATT+AGG | - | chr5.4:65992702-65992721 | None:intergenic | 20.0% |
| ! | ACAAAAATCACAATCAAATG+TGG | - | chr5.4:65992513-65992532 | None:intergenic | 25.0% |
| ! | CTTAAGAGAGATAATATGTA+TGG | + | chr5.4:65993194-65993213 | MS.gene94212:CDS | 25.0% |
| ! | TAATATGTATGGACATGATA+TGG | + | chr5.4:65993205-65993224 | MS.gene94212:CDS | 25.0% |
| ! | TAGAAGAAGAACCATAATTA+AGG | - | chr5.4:65993151-65993170 | None:intergenic | 25.0% |
| ! | TATAGTAAGATTTCTGATCT+TGG | - | chr5.4:65993106-65993125 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTGCGATGTTA+AGG | + | chr5.4:65992525-65992544 | MS.gene94212:intron | 25.0% |
| !!! | TTCTTACTTTAGGATGTTTT+AGG | - | chr5.4:65992360-65992379 | None:intergenic | 25.0% |
| AAGAACACAACAATTGATCA+CGG | - | chr5.4:65992770-65992789 | None:intergenic | 30.0% | |
| ATTATAGTTATGAGGAGTTG+AGG | + | chr5.4:65992444-65992463 | MS.gene94212:intron | 30.0% | |
| CTCACTCAATACCTTAATTA+TGG | + | chr5.4:65993137-65993156 | MS.gene94212:CDS | 30.0% | |
| CTCTATTGTTGAAGACATAT+TGG | + | chr5.4:65992737-65992756 | MS.gene94212:intron | 30.0% | |
| !! | GTAGAATCAGACTTGTTATT+CGG | + | chr5.4:65992808-65992827 | MS.gene94212:intron | 30.0% |
| AAAGTTTGCCATAGTTCACA+AGG | + | chr5.4:65992042-65992061 | MS.gene94212:CDS | 35.0% | |
| ACCAAAAACCTTGTGAACTA+TGG | - | chr5.4:65992053-65992072 | None:intergenic | 35.0% | |
| AGAAGGAAAATAAGGAGCAA+AGG | - | chr5.4:65992011-65992030 | None:intergenic | 35.0% | |
| CAATGTTAGCAAAATGTTGC+AGG | + | chr5.4:65992078-65992097 | MS.gene94212:CDS | 35.0% | |
| CACAAACTATTCAACCTACA+AGG | - | chr5.4:65992258-65992277 | None:intergenic | 35.0% | |
| GGTTCATGAGAAGGAAAATA+AGG | - | chr5.4:65992019-65992038 | None:intergenic | 35.0% | |
| TTATTCAAGGTTCACCTTGT+AGG | + | chr5.4:65992241-65992260 | MS.gene94212:intron | 35.0% | |
| ! | GTGAACTATGGCAAACTTTT+GGG | - | chr5.4:65992041-65992060 | None:intergenic | 35.0% |
| ! | TGAACTATGGCAAACTTTTG+GGG | - | chr5.4:65992040-65992059 | None:intergenic | 35.0% |
| ! | TGTGAACTATGGCAAACTTT+TGG | - | chr5.4:65992042-65992061 | None:intergenic | 35.0% |
| !! | TTCTGATCTTGGTTGATTTG+TGG | - | chr5.4:65993095-65993114 | None:intergenic | 35.0% |
| AAATCGTAGTCCTCTCGTAT+TGG | - | chr5.4:65992554-65992573 | None:intergenic | 40.0% | |
| AACACAACAATTGATCACGG+AGG | - | chr5.4:65992767-65992786 | None:intergenic | 40.0% | |
| ATAGTTATGAGGAGTTGAGG+AGG | + | chr5.4:65992447-65992466 | MS.gene94212:intron | 40.0% | |
| ATGAAGCAAATGCAAGAGTG+AGG | + | chr5.4:65992937-65992956 | MS.gene94212:CDS | 40.0% | |
| CATCTGCTCTTTGGTGAATT+GGG | - | chr5.4:65992899-65992918 | None:intergenic | 40.0% | |
| GTTAAGGATTCCAATACGAG+AGG | + | chr5.4:65992541-65992560 | MS.gene94212:intron | 40.0% | |
| TGAAGCAAATGCAAGAGTGA+GGG | + | chr5.4:65992938-65992957 | MS.gene94212:CDS | 40.0% | |
| ! | GCCATAGTTCACAAGGTTTT+TGG | + | chr5.4:65992049-65992068 | MS.gene94212:CDS | 40.0% |
| ! | GGGTTAGAGAGTACAAAACT+TGG | - | chr5.4:65992681-65992700 | None:intergenic | 40.0% |
| ! | TCACTTGCTCATTTTGCATC+TGG | - | chr5.4:65993064-65993083 | None:intergenic | 40.0% |
| !! | TCTTGGTTGATTTGTGGTGT+TGG | - | chr5.4:65993089-65993108 | None:intergenic | 40.0% |
| !!! | AACTTTTGGGGTTCATGAGA+AGG | - | chr5.4:65992028-65992047 | None:intergenic | 40.0% |
| ACAACAATTGATCACGGAGG+TGG | - | chr5.4:65992764-65992783 | None:intergenic | 45.0% | |
| AGAAGCTTGCATGAAGCACA+TGG | - | chr5.4:65991962-65991981 | None:intergenic | 45.0% | |
| AGAGTGAGGGATCCAGTTTA+TGG | + | chr5.4:65992951-65992970 | MS.gene94212:CDS | 45.0% | |
| CAACAATTGATCACGGAGGT+GGG | - | chr5.4:65992763-65992782 | None:intergenic | 45.0% | |
| GATCCAGTTTATGGCTGTGT+TGG | + | chr5.4:65992960-65992979 | MS.gene94212:CDS | 45.0% | |
| GCATCTGCTCTTTGGTGAAT+TGG | - | chr5.4:65992900-65992919 | None:intergenic | 45.0% | |
| TGTTCACTGCATCTGCTCTT+TGG | - | chr5.4:65992908-65992927 | None:intergenic | 45.0% | |
| TTGCGACACAATCACGATTG+AGG | + | chr5.4:65992478-65992497 | MS.gene94212:intron | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTAATG+CGG | - | chr5.4:65992711-65992730 | None:intergenic | 5.0% |
| GCTCCAACACAGCCATAAAC+TGG | - | chr5.4:65992966-65992985 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 65991944 | 65993235 | 65991944 | ID=MS.gene94212 |
| chr5.4 | mRNA | 65991944 | 65993235 | 65991944 | ID=MS.gene94212.t1;Parent=MS.gene94212 |
| chr5.4 | exon | 65991944 | 65992099 | 65991944 | ID=MS.gene94212.t1.exon1;Parent=MS.gene94212.t1 |
| chr5.4 | CDS | 65991944 | 65992099 | 65991944 | ID=cds.MS.gene94212.t1;Parent=MS.gene94212.t1 |
| chr5.4 | exon | 65992891 | 65993235 | 65992891 | ID=MS.gene94212.t1.exon2;Parent=MS.gene94212.t1 |
| chr5.4 | CDS | 65992891 | 65993235 | 65992891 | ID=cds.MS.gene94212.t1;Parent=MS.gene94212.t1 |
| Gene Sequence |
| Protein sequence |
