Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94305.t1 | KEH26369.1 | 60.3 | 199 | 66 | 2 | 50 | 248 | 351 | 536 | 2.30E-50 | 209.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94305.t1 | Q9FLX8 | 45.5 | 55 | 29 | 1 | 50 | 104 | 186 | 239 | 7.7e-07 | 55.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94305.t1 | A0A072U999 | 60.3 | 199 | 66 | 2 | 50 | 248 | 351 | 536 | 1.6e-50 | 209.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene94305.t1 | TF | WRKY |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94305.t1 | MTR_6g053200 | 79.500 | 200 | 28 | 2 | 49 | 248 | 350 | 536 | 6.09e-107 | 319 |
MS.gene94305.t1 | MTR_2g024380 | 47.500 | 200 | 105 | 0 | 49 | 248 | 271 | 470 | 1.92e-57 | 189 |
MS.gene94305.t1 | MTR_2g024350 | 45.500 | 200 | 109 | 0 | 49 | 248 | 28 | 227 | 2.57e-57 | 182 |
MS.gene94305.t1 | MTR_7g104980 | 50.251 | 199 | 98 | 1 | 50 | 248 | 18 | 215 | 1.90e-53 | 172 |
MS.gene94305.t1 | MTR_8g067650 | 36.000 | 200 | 88 | 4 | 49 | 247 | 359 | 519 | 2.82e-29 | 115 |
MS.gene94305.t1 | MTR_8g067635 | 37.634 | 186 | 82 | 4 | 49 | 233 | 369 | 521 | 8.65e-27 | 108 |
MS.gene94305.t1 | MTR_1g099600 | 47.541 | 61 | 28 | 2 | 44 | 104 | 203 | 259 | 5.15e-12 | 64.7 |
MS.gene94305.t1 | MTR_8g069935 | 57.143 | 49 | 21 | 0 | 49 | 97 | 351 | 399 | 6.15e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 54 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTCAGGAAACAAACTTAT+TGG | 0.153110 | 6.2:+43014379 | MS.gene94305:CDS |
TTTCTCTAGCAGCAGGTAAA+TGG | 0.191301 | 6.2:-43014243 | None:intergenic |
TACCCGCTGTTGGAAATTTC+AGG | 0.250971 | 6.2:+43014086 | MS.gene94305:CDS |
TAGTCTTTGATGACTTGTTC+TGG | 0.291346 | 6.2:-43014060 | None:intergenic |
TATGTTAGAGGATTTCTTAT+TGG | 0.311118 | 6.2:+43014447 | MS.gene94305:CDS |
AACATTATCACTAGTGTTCA+TGG | 0.339452 | 6.2:+43012501 | MS.gene94305:CDS |
GAACCCATCTTTGAAATGTT+TGG | 0.367325 | 6.2:-43014115 | None:intergenic |
AGTCTTTGATGACTTGTTCT+GGG | 0.370924 | 6.2:-43014059 | None:intergenic |
GTCAAGTTGGTGGTGGTGCT+AGG | 0.408314 | 6.2:-43012477 | None:intergenic |
GTGATTCACCGGAGTAAACC+TGG | 0.417652 | 6.2:-43014348 | None:intergenic |
AAGCATGACTGATATGTTAG+AGG | 0.427454 | 6.2:+43014435 | MS.gene94305:CDS |
GTGGTGGTGCTAGGGCTAAT+AGG | 0.429133 | 6.2:-43012468 | None:intergenic |
GTCACCAAACATTTCAAAGA+TGG | 0.429508 | 6.2:+43014111 | MS.gene94305:CDS |
GAATCACAAATCCTTCCTTC+AGG | 0.431729 | 6.2:+43014364 | MS.gene94305:CDS |
CACAACAAAAGTGTCCTCTT+TGG | 0.441667 | 6.2:-43013972 | None:intergenic |
AAGGCGTTGGTAGTGGTCAT+GGG | 0.441960 | 6.2:-43012402 | None:intergenic |
TGAAATGGTAGGATATTGAT+TGG | 0.447083 | 6.2:-43012526 | None:intergenic |
TTCTCTAGCAGCAGGTAAAT+GGG | 0.451842 | 6.2:-43014242 | None:intergenic |
ACTTGAATATTCCTGCTCTC+TGG | 0.454557 | 6.2:-43014169 | None:intergenic |
ATAAGTTCAGTTTCTGAATG+AGG | 0.455899 | 6.2:-43014214 | None:intergenic |
AGTGATAATGTTAGTCAAGT+TGG | 0.462717 | 6.2:-43012490 | None:intergenic |
TAAGGCGTTGGTAGTGGTCA+TGG | 0.465082 | 6.2:-43012403 | None:intergenic |
GCAGGTAAATGGAACTCTAT+TGG | 0.471063 | 6.2:+43014028 | MS.gene94305:CDS |
ACCTGGGCATTGCTACTCAT+TGG | 0.480044 | 6.2:-43014331 | None:intergenic |
ATAGAGTTCCATTTACCTGC+TGG | 0.487185 | 6.2:-43014025 | None:intergenic |
GATTCAATTTCTCTAGCAGC+AGG | 0.497334 | 6.2:-43014250 | None:intergenic |
TCAAGTTGGTGGTGGTGCTA+GGG | 0.503913 | 6.2:-43012476 | None:intergenic |
TAAGTTCAGTTTCTGAATGA+GGG | 0.508550 | 6.2:-43014213 | None:intergenic |
GTTAGCTAAGGCGTTGGTAG+TGG | 0.511992 | 6.2:-43012409 | None:intergenic |
TAAGTTTGTTTCCTGAAGGA+AGG | 0.517251 | 6.2:-43014375 | None:intergenic |
CTAATAGGTGCAGTGGTGGT+CGG | 0.525114 | 6.2:-43012453 | None:intergenic |
AAGACTAGATTACCCGCTGT+TGG | 0.528458 | 6.2:+43014076 | MS.gene94305:CDS |
TCACCAAACATTTCAAAGAT+GGG | 0.532829 | 6.2:+43014112 | MS.gene94305:CDS |
CCAATAAGTTTGTTTCCTGA+AGG | 0.534237 | 6.2:-43014379 | None:intergenic |
GAGTATTGCATACTCTGAAA+TGG | 0.535792 | 6.2:-43012541 | None:intergenic |
AGGAAGGATTTGTGATTCAC+CGG | 0.548075 | 6.2:-43014359 | None:intergenic |
TCTAACATATCAGTCATGCT+TGG | 0.562921 | 6.2:-43014433 | None:intergenic |
AGTTGTTGTGGGGTTAGCTA+AGG | 0.564800 | 6.2:-43012421 | None:intergenic |
GCCAATGAGTAGCAATGCCC+AGG | 0.566515 | 6.2:+43014330 | MS.gene94305:CDS |
ATGTCGATCATCCAGAGAGC+AGG | 0.571282 | 6.2:+43014158 | MS.gene94305:CDS |
AGCAATGCCCAGGTTTACTC+CGG | 0.575866 | 6.2:+43014340 | MS.gene94305:CDS |
CTTTGATGACTTGTTCTGGG+AGG | 0.593215 | 6.2:-43014056 | None:intergenic |
GGTAAATGGAACTCTATTGG+TGG | 0.600259 | 6.2:+43014031 | MS.gene94305:CDS |
GACCTGAAATTTCCAACAGC+GGG | 0.604025 | 6.2:-43014088 | None:intergenic |
ATTGCATACTCTGAAATGGT+AGG | 0.607029 | 6.2:-43012537 | None:intergenic |
GCTAGGGCTAATAGGTGCAG+TGG | 0.611408 | 6.2:-43012460 | None:intergenic |
TGATTCACCGGAGTAAACCT+GGG | 0.612077 | 6.2:-43014347 | None:intergenic |
TGTGGGGTTAGCTAAGGCGT+TGG | 0.612971 | 6.2:-43012415 | None:intergenic |
GAAATAGAAAACCATCATTG+AGG | 0.620026 | 6.2:-43014480 | None:intergenic |
GATAATGTTAGTCAAGTTGG+TGG | 0.636625 | 6.2:-43012487 | None:intergenic |
AGGGCTAATAGGTGCAGTGG+TGG | 0.638903 | 6.2:-43012457 | None:intergenic |
AATGTTAGTCAAGTTGGTGG+TGG | 0.642962 | 6.2:-43012484 | None:intergenic |
ATAGAAAACCATCATTGAGG+TGG | 0.645904 | 6.2:-43014477 | None:intergenic |
CGACCTGAAATTTCCAACAG+CGG | 0.704425 | 6.2:-43014089 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAATAAATAAATTTTAT+GGG | - | chr6.2:43013398-43013417 | None:intergenic | 0.0% |
!!! | TTTAAAATAAATAAATTTTA+TGG | - | chr6.2:43013399-43013418 | None:intergenic | 0.0% |
!! | ACTAAAATTATATGTTTATT+GGG | - | chr6.2:43013812-43013831 | None:intergenic | 10.0% |
!! | TACTAAAATTATATGTTTAT+TGG | - | chr6.2:43013813-43013832 | None:intergenic | 10.0% |
!!! | TAAATATTTTACATATAACA+AGG | + | chr6.2:43013468-43013487 | MS.gene94305:intron | 10.0% |
!!! | TATCAAAATTAATGTATTTT+TGG | + | chr6.2:43013255-43013274 | MS.gene94305:intron | 10.0% |
!! | AAATTAATCTTATCAAGTAT+TGG | - | chr6.2:43013669-43013688 | None:intergenic | 15.0% |
!! | AATACTTGATAAGATTAATT+TGG | + | chr6.2:43013668-43013687 | MS.gene94305:intron | 15.0% |
!!! | ATATGTAAAAGTTAGATTTT+TGG | - | chr6.2:43012985-43013004 | None:intergenic | 15.0% |
!!! | CTAATGTTTAAATATGTTTT+TGG | - | chr6.2:43013611-43013630 | None:intergenic | 15.0% |
!! | AATTTATTCGTAGGATAATT+TGG | - | chr6.2:43013495-43013514 | None:intergenic | 20.0% |
!! | ATTAAAGTGATACAATTTAC+AGG | + | chr6.2:43013846-43013865 | MS.gene94305:intron | 20.0% |
!! | TCACTTTGTATTTATGATAA+GGG | + | chr6.2:43013635-43013654 | MS.gene94305:intron | 20.0% |
!! | TGTAACATTTATGTAAAACT+TGG | + | chr6.2:43013786-43013805 | MS.gene94305:intron | 20.0% |
!! | TTACAGAAAAATTAACAACA+AGG | + | chr6.2:43012847-43012866 | MS.gene94305:intron | 20.0% |
!! | TTCACTTTGTATTTATGATA+AGG | + | chr6.2:43013634-43013653 | MS.gene94305:intron | 20.0% |
!!! | AAAACAAGTTTTCAACATTA+GGG | - | chr6.2:43014279-43014298 | None:intergenic | 20.0% |
!!! | ATTTTAGTCGATCATAAATA+AGG | - | chr6.2:43013448-43013467 | None:intergenic | 20.0% |
!!! | TAACAATCAAAACTTTTACA+TGG | - | chr6.2:43013316-43013335 | None:intergenic | 20.0% |
!!! | TTTTTGGTTTAAGTACAAAA+TGG | + | chr6.2:43013271-43013290 | MS.gene94305:intron | 20.0% |
! | AATTAACAACAAGGTAACTT+TGG | + | chr6.2:43012856-43012875 | MS.gene94305:intron | 25.0% |
! | CAAAACATAATTCAAGAATC+AGG | + | chr6.2:43012727-43012746 | MS.gene94305:intron | 25.0% |
! | CAACAAGTAGAAAAAACAAA+AGG | - | chr6.2:43013363-43013382 | None:intergenic | 25.0% |
! | TATGGACAAAAAAACATTAG+CGG | + | chr6.2:43012932-43012951 | MS.gene94305:intron | 25.0% |
! | TATGTTAGAGGATTTCTTAT+TGG | + | chr6.2:43014447-43014466 | MS.gene94305:CDS | 25.0% |
!! | AAACAAGTTTTCAACATTAG+GGG | - | chr6.2:43014278-43014297 | None:intergenic | 25.0% |
!! | GAAAACAAGTTTTCAACATT+AGG | - | chr6.2:43014280-43014299 | None:intergenic | 25.0% |
!!! | TTTCTACTTGTTGTTTGTTT+TGG | + | chr6.2:43013370-43013389 | MS.gene94305:intron | 25.0% |
AAAGCTTATTTGTTCTCACA+TGG | - | chr6.2:43012886-43012905 | None:intergenic | 30.0% | |
AACACTTGACTGTTATTGTT+TGG | - | chr6.2:43012588-43012607 | None:intergenic | 30.0% | |
AACATTATCACTAGTGTTCA+TGG | + | chr6.2:43012501-43012520 | MS.gene94305:CDS | 30.0% | |
ACAAATATATCACTCGTTTC+AGG | + | chr6.2:43013748-43013767 | MS.gene94305:intron | 30.0% | |
ATAAGTTCAGTTTCTGAATG+AGG | - | chr6.2:43014217-43014236 | None:intergenic | 30.0% | |
ATGGACAAAAAAACATTAGC+GGG | + | chr6.2:43012933-43012952 | MS.gene94305:intron | 30.0% | |
ATTAGGTAAAATCCTAGATC+TGG | - | chr6.2:43012691-43012710 | None:intergenic | 30.0% | |
CAAATAAGCTTTCAGAAGAT+TGG | + | chr6.2:43012894-43012913 | MS.gene94305:intron | 30.0% | |
CAAATATATCACTCGTTTCA+GGG | + | chr6.2:43013749-43013768 | MS.gene94305:intron | 30.0% | |
CTAATACAACATGATACCTA+GGG | + | chr6.2:43013044-43013063 | MS.gene94305:intron | 30.0% | |
GAAATAGAAAACCATCATTG+AGG | - | chr6.2:43014483-43014502 | None:intergenic | 30.0% | |
TAAGTTCAGTTTCTGAATGA+GGG | - | chr6.2:43014216-43014235 | None:intergenic | 30.0% | |
TCACCAAACATTTCAAAGAT+GGG | + | chr6.2:43014112-43014131 | MS.gene94305:CDS | 30.0% | |
TCTAATACAACATGATACCT+AGG | + | chr6.2:43013043-43013062 | MS.gene94305:intron | 30.0% | |
TCTCTGCAAAATTTATTCGT+AGG | - | chr6.2:43013504-43013523 | None:intergenic | 30.0% | |
TGAAATGGTAGGATATTGAT+TGG | - | chr6.2:43012529-43012548 | None:intergenic | 30.0% | |
! | AGTGATAATGTTAGTCAAGT+TGG | - | chr6.2:43012493-43012512 | None:intergenic | 30.0% |
! | CAATCTATGAATGATTTTGC+AGG | + | chr6.2:43013885-43013904 | MS.gene94305:intron | 30.0% |
! | GCTTTTTGTGAATCTGAATT+AGG | - | chr6.2:43012708-43012727 | None:intergenic | 30.0% |
!!! | ATACCTAGGGTTTTAAATAG+TGG | + | chr6.2:43013057-43013076 | MS.gene94305:intron | 30.0% |
!!! | CATCTTTGTTTTCTATCTGT+TGG | - | chr6.2:43013527-43013546 | None:intergenic | 30.0% |
AAAATCCTAGATCTGGTGTT+GGG | - | chr6.2:43012684-43012703 | None:intergenic | 35.0% | |
AAGCATGACTGATATGTTAG+AGG | + | chr6.2:43014435-43014454 | MS.gene94305:CDS | 35.0% | |
ACAAAAAAGTGACACCAAAG+AGG | + | chr6.2:43013958-43013977 | MS.gene94305:CDS | 35.0% | |
ATAAGCTTTCAGAAGATTGG+TGG | + | chr6.2:43012897-43012916 | MS.gene94305:intron | 35.0% | |
ATAGAAAACCATCATTGAGG+TGG | - | chr6.2:43014480-43014499 | None:intergenic | 35.0% | |
ATGAAAAACCAGCAGGTAAA+TGG | + | chr6.2:43014017-43014036 | MS.gene94305:CDS | 35.0% | |
CCTTCAGGAAACAAACTTAT+TGG | + | chr6.2:43014379-43014398 | MS.gene94305:CDS | 35.0% | |
GTCACCAAACATTTCAAAGA+TGG | + | chr6.2:43014111-43014130 | MS.gene94305:CDS | 35.0% | |
GTGATTGATTGAGCTTTCTT+GGG | - | chr6.2:43012650-43012669 | None:intergenic | 35.0% | |
TAAAATCCTAGATCTGGTGT+TGG | - | chr6.2:43012685-43012704 | None:intergenic | 35.0% | |
TCTAACATATCAGTCATGCT+TGG | - | chr6.2:43014436-43014455 | None:intergenic | 35.0% | |
TGATTGATTGAGCTTTCTTG+GGG | - | chr6.2:43012649-43012668 | None:intergenic | 35.0% | |
TGTGATTGATTGAGCTTTCT+TGG | - | chr6.2:43012651-43012670 | None:intergenic | 35.0% | |
! | AGACCACTATTTAAAACCCT+AGG | - | chr6.2:43013063-43013082 | None:intergenic | 35.0% |
! | CCAATAAGTTTGTTTCCTGA+AGG | - | chr6.2:43014382-43014401 | None:intergenic | 35.0% |
! | CTGAATTGTGGTCTTAATCT+AGG | + | chr6.2:43013109-43013128 | MS.gene94305:intron | 35.0% |
! | GAGTATTGCATACTCTGAAA+TGG | - | chr6.2:43012544-43012563 | None:intergenic | 35.0% |
! | TAAGTTTGTTTCCTGAAGGA+AGG | - | chr6.2:43014378-43014397 | None:intergenic | 35.0% |
! | TTTTGGATGTGAAAAGACCT+TGG | - | chr6.2:43012968-43012987 | None:intergenic | 35.0% |
!! | ACTTTTGTTGTGACGTTTGT+TGG | + | chr6.2:43013983-43014002 | MS.gene94305:CDS | 35.0% |
!! | AGTCTTTGATGACTTGTTCT+GGG | - | chr6.2:43014062-43014081 | None:intergenic | 35.0% |
!! | ATTGCATACTCTGAAATGGT+AGG | - | chr6.2:43012540-43012559 | None:intergenic | 35.0% |
!! | GAACCCATCTTTGAAATGTT+TGG | - | chr6.2:43014118-43014137 | None:intergenic | 35.0% |
!! | GATAATGTTAGTCAAGTTGG+TGG | - | chr6.2:43012490-43012509 | None:intergenic | 35.0% |
!! | TAGTCTTTGATGACTTGTTC+TGG | - | chr6.2:43014063-43014082 | None:intergenic | 35.0% |
!!! | ATTTACCTGCTGGTTTTTCA+TGG | - | chr6.2:43014018-43014037 | None:intergenic | 35.0% |
AAGACCACAATTCAGTGCAA+TGG | - | chr6.2:43013104-43013123 | None:intergenic | 40.0% | |
AATTACCCAACACCAGATCT+AGG | + | chr6.2:43012676-43012695 | MS.gene94305:intron | 40.0% | |
ACTTGAATATTCCTGCTCTC+TGG | - | chr6.2:43014172-43014191 | None:intergenic | 40.0% | |
AGGAAGGATTTGTGATTCAC+CGG | - | chr6.2:43014362-43014381 | None:intergenic | 40.0% | |
ATAGAGTTCCATTTACCTGC+TGG | - | chr6.2:43014028-43014047 | None:intergenic | 40.0% | |
ATGTGAAAAGACCTTGGATG+TGG | - | chr6.2:43012962-43012981 | None:intergenic | 40.0% | |
GAATCACAAATCCTTCCTTC+AGG | + | chr6.2:43014364-43014383 | MS.gene94305:CDS | 40.0% | |
GATTCAATTTCTCTAGCAGC+AGG | - | chr6.2:43014253-43014272 | None:intergenic | 40.0% | |
GCAGGTAAATGGAACTCTAT+TGG | + | chr6.2:43014028-43014047 | MS.gene94305:CDS | 40.0% | |
GCGTGAAAAAAGTTGTTGTG+GGG | - | chr6.2:43012434-43012453 | None:intergenic | 40.0% | |
GGCGTGAAAAAAGTTGTTGT+GGG | - | chr6.2:43012435-43012454 | None:intergenic | 40.0% | |
GGTAAATGGAACTCTATTGG+TGG | + | chr6.2:43014031-43014050 | MS.gene94305:CDS | 40.0% | |
TGTGAAAAGACCTTGGATGT+GGG | - | chr6.2:43012961-43012980 | None:intergenic | 40.0% | |
TTCTCTAGCAGCAGGTAAAT+GGG | - | chr6.2:43014245-43014264 | None:intergenic | 40.0% | |
TTTCTCTAGCAGCAGGTAAA+TGG | - | chr6.2:43014246-43014265 | None:intergenic | 40.0% | |
!! | AATGTTAGTCAAGTTGGTGG+TGG | - | chr6.2:43012487-43012506 | None:intergenic | 40.0% |
!! | CACAACAAAAGTGTCCTCTT+TGG | - | chr6.2:43013975-43013994 | None:intergenic | 40.0% |
!! | GATTTTGACCACCTCAATGA+TGG | + | chr6.2:43014469-43014488 | MS.gene94305:CDS | 40.0% |
AAGACTAGATTACCCGCTGT+TGG | + | chr6.2:43014076-43014095 | MS.gene94305:CDS | 45.0% | |
AGCTTTCTTGGGGATTGTTG+TGG | - | chr6.2:43012639-43012658 | None:intergenic | 45.0% | |
ATTCAGTGCAATGGCAAGGA+TGG | - | chr6.2:43013095-43013114 | None:intergenic | 45.0% | |
CACAACCATGAAAAACCAGC+AGG | + | chr6.2:43014010-43014029 | MS.gene94305:CDS | 45.0% | |
CACAATTCAGTGCAATGGCA+AGG | - | chr6.2:43013099-43013118 | None:intergenic | 45.0% | |
CGACCTGAAATTTCCAACAG+CGG | - | chr6.2:43014092-43014111 | None:intergenic | 45.0% | |
CGGCGTGAAAAAAGTTGTTG+TGG | - | chr6.2:43012436-43012455 | None:intergenic | 45.0% | |
CTTGCCATTGCACTGAATTG+TGG | + | chr6.2:43013097-43013116 | MS.gene94305:intron | 45.0% | |
GACCTGAAATTTCCAACAGC+GGG | - | chr6.2:43014091-43014110 | None:intergenic | 45.0% | |
GTGAAAAGACCTTGGATGTG+GGG | - | chr6.2:43012960-43012979 | None:intergenic | 45.0% | |
TACCCGCTGTTGGAAATTTC+AGG | + | chr6.2:43014086-43014105 | MS.gene94305:CDS | 45.0% | |
TGATTCACCGGAGTAAACCT+GGG | - | chr6.2:43014350-43014369 | None:intergenic | 45.0% | |
TGGTGGTCGTGGACAAAATA+TGG | + | chr6.2:43012914-43012933 | MS.gene94305:intron | 45.0% | |
! | TTTCAGAAGATTGGTGGTCG+TGG | + | chr6.2:43012903-43012922 | MS.gene94305:intron | 45.0% |
!! | AGTTGTTGTGGGGTTAGCTA+AGG | - | chr6.2:43012424-43012443 | None:intergenic | 45.0% |
!! | CTTTGATGACTTGTTCTGGG+AGG | - | chr6.2:43014059-43014078 | None:intergenic | 45.0% |
!! | TAAAAAAAAATGTATTTATA+TGG | + | chr6.2:43013584-43013603 | MS.gene94305:intron | 5.0% |
AGCAATGCCCAGGTTTACTC+CGG | + | chr6.2:43014340-43014359 | MS.gene94305:CDS | 50.0% | |
ATGTCGATCATCCAGAGAGC+AGG | + | chr6.2:43014158-43014177 | MS.gene94305:CDS | 50.0% | |
CGTTTCAGGGAGAGAGAGTT+GGG | + | chr6.2:43013762-43013781 | MS.gene94305:intron | 50.0% | |
CTAATAGGTGCAGTGGTGGT+CGG | - | chr6.2:43012456-43012475 | None:intergenic | 50.0% | |
GTGATTCACCGGAGTAAACC+TGG | - | chr6.2:43014351-43014370 | None:intergenic | 50.0% | |
TCGTTTCAGGGAGAGAGAGT+TGG | + | chr6.2:43013761-43013780 | MS.gene94305:intron | 50.0% | |
! | ACCTGGGCATTGCTACTCAT+TGG | - | chr6.2:43014334-43014353 | None:intergenic | 50.0% |
!! | GTTAGCTAAGGCGTTGGTAG+TGG | - | chr6.2:43012412-43012431 | None:intergenic | 50.0% |
!! | TCAAGTTGGTGGTGGTGCTA+GGG | - | chr6.2:43012479-43012498 | None:intergenic | 50.0% |
AGGGCTAATAGGTGCAGTGG+TGG | - | chr6.2:43012460-43012479 | None:intergenic | 55.0% | |
GCCAATGAGTAGCAATGCCC+AGG | + | chr6.2:43014330-43014349 | MS.gene94305:CDS | 55.0% | |
GCTAGGGCTAATAGGTGCAG+TGG | - | chr6.2:43012463-43012482 | None:intergenic | 55.0% | |
! | GTGGTGGTGCTAGGGCTAAT+AGG | - | chr6.2:43012471-43012490 | None:intergenic | 55.0% |
!! | GTCAAGTTGGTGGTGGTGCT+AGG | - | chr6.2:43012480-43012499 | None:intergenic | 55.0% |
!! | TGTGGGGTTAGCTAAGGCGT+TGG | - | chr6.2:43012418-43012437 | None:intergenic | 55.0% |
! | TTAGCGGGTCCCCACATCCA+AGG | + | chr6.2:43012948-43012967 | MS.gene94305:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 43012405 | 43014507 | 43012405 | ID=MS.gene94305 |
chr6.2 | mRNA | 43012405 | 43014507 | 43012405 | ID=MS.gene94305.t1;Parent=MS.gene94305 |
chr6.2 | exon | 43012405 | 43012550 | 43012405 | ID=MS.gene94305.t1.exon1;Parent=MS.gene94305.t1 |
chr6.2 | CDS | 43012405 | 43012550 | 43012405 | ID=cds.MS.gene94305.t1;Parent=MS.gene94305.t1 |
chr6.2 | exon | 43013907 | 43014507 | 43013907 | ID=MS.gene94305.t1.exon2;Parent=MS.gene94305.t1 |
chr6.2 | CDS | 43013907 | 43014507 | 43013907 | ID=cds.MS.gene94305.t1;Parent=MS.gene94305.t1 |
Gene Sequence |
Protein sequence |