AlfalfaGEDB | MS.gene94343

M. sativa cultivar XinJiangDaYe / MS.gene94343

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94343.t1	XP_024640623.1	93.7	205	13	0	1	205	1	205	5.00E-104	387.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94343.t1	Q9SZL8	27.3	187	119	7	30	204	59	240	1.8e-09	64.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94343.t1	A0A072TDR2	94.3	158	9	0	20	177	1	158	2.8e-80	307.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene94343.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94343.t1	MTR_0853s0010	94.304	158	9	0	20	177	1	158	3.89e-111	315
MS.gene94343.t1	MTR_1g019850	52.381	168	67	2	18	179	38	198	2.02e-53	171
MS.gene94343.t1	MTR_2g024230	55.224	67	30	0	37	103	83	149	4.70e-21	85.9
MS.gene94343.t1	MTR_1g033820	44.000	75	41	1	32	105	15	89	2.47e-15	68.9
MS.gene94343.t1	MTR_6g048540	48.485	66	32	1	35	98	19	84	1.22e-12	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94343.t1	AT4G38180	27.273	176	111	6	41	204	70	240	6.07e-12	64.3

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Find 25 sgRNAs with CRISPR-Local

Find 38 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTAATGATAGGCCATT+TGG	0.319534	3.2:-43149559	None:intergenic
AACATCAAGAACTGATTGTA+AGG	0.444776	3.2:+43149503	MS.gene94343:CDS
AATGTAATGATAGGCCATTT+GGG	0.467781	3.2:-43149558	None:intergenic
AATGTTTAGCAATGAAGGTT+CGG	0.471515	3.2:+43149719	MS.gene94343:CDS
AGAAGATAGTCATAACATGG+AGG	0.736903	3.2:+43149068	MS.gene94343:CDS
AGTTGAACAGTTTGATCAAG+AGG	0.557965	3.2:+43149671	MS.gene94343:CDS
ATATTTGTTTGCTCTAATGC+TGG	0.447741	3.2:+43149411	MS.gene94343:CDS
CAATACTCATAATCATGCAA+TGG	0.611156	3.2:+43149584	MS.gene94343:CDS
CATGTTATGACTATCTTCTT+CGG	0.402279	3.2:-43149064	None:intergenic
CCAAGAGTATAAACTATCTT+AGG	0.313740	3.2:+43149613	MS.gene94343:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTAATGATAGGCCATT+TGG	-	chr3.2:43149562-43149581	None:intergenic	30.0%
AACATCAAGAACTGATTGTA+AGG	+	chr3.2:43149503-43149522	MS.gene94343:CDS	30.0%
AATGTAATGATAGGCCATTT+GGG	-	chr3.2:43149561-43149580	None:intergenic	30.0%
AATGTTTAGCAATGAAGGTT+CGG	+	chr3.2:43149719-43149738	MS.gene94343:CDS	30.0%
ATATTTGTTTGCTCTAATGC+TGG	+	chr3.2:43149411-43149430	MS.gene94343:CDS	30.0%
CAATACTCATAATCATGCAA+TGG	+	chr3.2:43149584-43149603	MS.gene94343:CDS	30.0%
CATGTTATGACTATCTTCTT+CGG	-	chr3.2:43149067-43149086	None:intergenic	30.0%
CCTAAGATAGTTTATACTCT+TGG	-	chr3.2:43149616-43149635	None:intergenic	30.0%
TGTCATTACTATCAACATGT+TGG	-	chr3.2:43149437-43149456	None:intergenic	30.0%
AGAAGATAGTCATAACATGG+AGG	+	chr3.2:43149068-43149087	MS.gene94343:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	43149042	43149785	43149042	ID=MS.gene94343
chr3.2	mRNA	43149042	43149785	43149042	ID=MS.gene94343.t1;Parent=MS.gene94343
chr3.2	exon	43149042	43149098	43149042	ID=MS.gene94343.t1.exon1;Parent=MS.gene94343.t1
chr3.2	CDS	43149042	43149098	43149042	ID=cds.MS.gene94343.t1;Parent=MS.gene94343.t1
chr3.2	exon	43149225	43149785	43149225	ID=MS.gene94343.t1.exon2;Parent=MS.gene94343.t1
chr3.2	CDS	43149225	43149785	43149225	ID=cds.MS.gene94343.t1;Parent=MS.gene94343.t1

Gene Sequence

>MS.gene94343

ATGGAAAGTCCAAAATCATATGCCGAAGAAGATAGTCATAACATGGAGGACATAGAGGTATTATGAATCAATTCTTCAATTACATTTGCTTTATGTTTTTTATATATTTCTTAACAAAATCATATGTATTTCATAGAATTTTAATTTCTAAGACTTTACAATGTTTTTTATTTTAATATATAGTGCAATGAAAATTCTCAAGAAAGAAGAAACCCTGAGCATGACTTAGATGTTCATGAGCATCAAAATATTGATCCTTGTATTGATATGGAATTTGACTCTCTTGATGATGTTAAAAATTTATACACGTCATTTGCTAAAAAAGAAGGTTTTGGAATTCATACACGTTCAACTAAGACAAATTTGTGCATATTTGTTTGCTCTAATGCTGGCCAACATGTTGATAGTAATGACAAAGAAGAAAGCAATGCAATCACAGTAAAAAGCAAAAACAGATGTTCAACATCAAGAACTGATTGTAAGGCAACACTTGTAGTTTCAAAAGCAAAAATGAGGCCCAAATGGCCTATCATTACATTTAACAATACTCATAATCATGCAATGGTTAGCCCCAAGAGTATAAACTATCTTAGGTGCCATAAAAAAATGGGTGGGGCAGCAAAGAATCTAGTTGAACAGTTTGATCAAGAGGGCTTGCCTACCGGAAAAGTCGCTGCAATGTTTAGCAATGAAGGTTCGGCTTTCTCTGATAGAGATTTTTGGAATCATCTTAGAGATCTCTGA

Protein sequence

>MS.gene94343.t1

MESPKSYAEEDSHNMEDIECNENSQERRNPEHDLDVHEHQNIDPCIDMEFDSLDDVKNLYTSFAKKEGFGIHTRSTKTNLCIFVCSNAGQHVDSNDKEESNAITVKSKNRCSTSRTDCKATLVVSKAKMRPKWPIITFNNTHNHAMVSPKSINYLRCHKKMGGAAKNLVEQFDQEGLPTGKVAAMFSNEGSAFSDRDFWNHLRDL