Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94365.t1 | RHN66007.1 | 92.4 | 899 | 31 | 3 | 1 | 862 | 101 | 999 | 0.00E+00 | 1506.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94365.t1 | Q0P4U8 | 28.6 | 651 | 364 | 19 | 20 | 659 | 378 | 938 | 2.6e-57 | 225.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94365.t1 | A0A396ISU0 | 92.4 | 899 | 31 | 3 | 1 | 862 | 101 | 999 | 0.0e+00 | 1506.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene94365.t1 | TR | SNF2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94365.t1 | MTR_4g124090 | 31.975 | 319 | 183 | 8 | 78 | 376 | 165 | 469 | 1.23e-37 | 151 |
MS.gene94365.t1 | MTR_4g124090 | 44.643 | 112 | 62 | 0 | 446 | 557 | 484 | 595 | 1.12e-22 | 104 |
MS.gene94365.t1 | MTR_1g035330 | 23.156 | 583 | 361 | 17 | 34 | 558 | 143 | 696 | 1.84e-27 | 119 |
MS.gene94365.t1 | MTR_7g090960 | 34.146 | 123 | 79 | 1 | 450 | 570 | 1210 | 1332 | 8.51e-15 | 79.7 |
MS.gene94365.t1 | MTR_7g090960 | 34.146 | 123 | 79 | 1 | 450 | 570 | 1129 | 1251 | 1.00e-14 | 79.3 |
MS.gene94365.t1 | MTR_1g053955 | 34.615 | 104 | 68 | 0 | 450 | 553 | 1080 | 1183 | 1.29e-14 | 79.3 |
MS.gene94365.t1 | MTR_4g078495 | 35.398 | 113 | 73 | 0 | 441 | 553 | 530 | 642 | 2.11e-14 | 78.2 |
MS.gene94365.t1 | MTR_4g078460 | 35.398 | 113 | 73 | 0 | 441 | 553 | 816 | 928 | 2.24e-14 | 78.2 |
MS.gene94365.t1 | MTR_2g020000 | 31.858 | 113 | 76 | 1 | 446 | 557 | 506 | 618 | 4.63e-14 | 77.0 |
MS.gene94365.t1 | MTR_7g078090 | 23.459 | 503 | 318 | 17 | 86 | 563 | 993 | 1453 | 4.73e-14 | 77.4 |
MS.gene94365.t1 | MTR_4g118845 | 30.973 | 113 | 77 | 1 | 446 | 557 | 316 | 428 | 1.38e-13 | 75.5 |
MS.gene94365.t1 | MTR_4g118845 | 30.973 | 113 | 77 | 1 | 446 | 557 | 503 | 615 | 1.60e-13 | 75.5 |
MS.gene94365.t1 | MTR_1g115215 | 38.835 | 103 | 63 | 0 | 450 | 552 | 887 | 989 | 3.96e-13 | 73.9 |
MS.gene94365.t1 | MTR_4g035100 | 34.579 | 107 | 67 | 1 | 450 | 553 | 1830 | 1936 | 1.80e-12 | 72.0 |
MS.gene94365.t1 | MTR_4g035100 | 34.579 | 107 | 67 | 1 | 450 | 553 | 1830 | 1936 | 1.82e-12 | 72.0 |
MS.gene94365.t1 | MTR_5g020000 | 34.286 | 105 | 68 | 1 | 450 | 553 | 524 | 628 | 4.03e-12 | 70.5 |
MS.gene94365.t1 | MTR_2g012830 | 35.922 | 103 | 66 | 0 | 450 | 552 | 1150 | 1252 | 3.69e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94365.t1 | AT5G07810 | 51.211 | 908 | 357 | 14 | 5 | 864 | 118 | 987 | 0.0 | 875 |
MS.gene94365.t1 | AT1G48310 | 31.737 | 501 | 257 | 11 | 75 | 557 | 160 | 593 | 1.01e-65 | 233 |
MS.gene94365.t1 | AT1G48310 | 31.737 | 501 | 257 | 11 | 75 | 557 | 165 | 598 | 1.21e-65 | 233 |
MS.gene94365.t1 | AT1G48310 | 32.335 | 501 | 254 | 12 | 75 | 557 | 160 | 593 | 1.26e-65 | 232 |
MS.gene94365.t1 | AT1G48310 | 29.369 | 412 | 206 | 12 | 75 | 468 | 160 | 504 | 6.09e-39 | 152 |
MS.gene94365.t1 | AT3G54280 | 27.074 | 458 | 270 | 18 | 131 | 553 | 1510 | 1938 | 2.78e-25 | 114 |
MS.gene94365.t1 | AT3G54280 | 26.957 | 460 | 268 | 18 | 131 | 553 | 1541 | 1969 | 3.09e-25 | 114 |
MS.gene94365.t1 | AT2G02090 | 22.857 | 525 | 331 | 14 | 86 | 558 | 212 | 714 | 4.84e-24 | 108 |
MS.gene94365.t1 | AT4G31900 | 22.938 | 497 | 302 | 16 | 80 | 558 | 218 | 651 | 1.77e-16 | 85.1 |
MS.gene94365.t1 | AT4G31900 | 22.938 | 497 | 302 | 16 | 80 | 558 | 218 | 651 | 2.15e-16 | 84.7 |
MS.gene94365.t1 | AT4G31900 | 22.938 | 497 | 302 | 16 | 80 | 558 | 177 | 610 | 3.22e-16 | 84.3 |
MS.gene94365.t1 | AT3G12810 | 35.577 | 104 | 67 | 0 | 450 | 553 | 1093 | 1196 | 2.79e-15 | 81.3 |
MS.gene94365.t1 | AT3G12810 | 35.577 | 104 | 67 | 0 | 450 | 553 | 1089 | 1192 | 2.84e-15 | 81.3 |
MS.gene94365.t1 | AT3G20010 | 39.815 | 108 | 65 | 0 | 445 | 552 | 623 | 730 | 3.25e-14 | 77.4 |
MS.gene94365.t1 | AT3G20010 | 39.815 | 108 | 65 | 0 | 445 | 552 | 598 | 705 | 3.71e-14 | 77.0 |
MS.gene94365.t1 | AT3G57300 | 33.028 | 109 | 73 | 0 | 450 | 558 | 1257 | 1365 | 3.87e-14 | 77.4 |
MS.gene94365.t1 | AT3G57300 | 33.028 | 109 | 73 | 0 | 450 | 558 | 1224 | 1332 | 3.94e-14 | 77.4 |
MS.gene94365.t1 | AT3G57300 | 33.028 | 109 | 73 | 0 | 450 | 558 | 1224 | 1332 | 3.94e-14 | 77.4 |
MS.gene94365.t1 | AT3G20010 | 39.815 | 108 | 65 | 0 | 445 | 552 | 889 | 996 | 9.51e-14 | 76.3 |
MS.gene94365.t1 | AT3G20010 | 39.815 | 108 | 65 | 0 | 445 | 552 | 889 | 996 | 9.51e-14 | 76.3 |
MS.gene94365.t1 | AT3G20010 | 39.815 | 108 | 65 | 0 | 445 | 552 | 889 | 996 | 9.51e-14 | 76.3 |
MS.gene94365.t1 | AT5G63950 | 23.846 | 520 | 316 | 21 | 79 | 553 | 369 | 853 | 1.09e-13 | 75.9 |
MS.gene94365.t1 | AT1G03750 | 34.906 | 106 | 69 | 0 | 448 | 553 | 544 | 649 | 1.10e-13 | 75.9 |
MS.gene94365.t1 | AT5G63950 | 24.038 | 520 | 298 | 21 | 79 | 553 | 369 | 836 | 3.86e-13 | 74.3 |
MS.gene94365.t1 | AT5G18620 | 29.730 | 111 | 77 | 1 | 449 | 558 | 512 | 622 | 4.85e-13 | 73.9 |
MS.gene94365.t1 | AT3G06400 | 30.088 | 113 | 78 | 1 | 446 | 557 | 504 | 616 | 5.08e-13 | 73.9 |
MS.gene94365.t1 | AT3G06400 | 30.088 | 113 | 78 | 1 | 446 | 557 | 504 | 616 | 5.16e-13 | 73.9 |
MS.gene94365.t1 | AT2G46020 | 23.752 | 501 | 318 | 19 | 86 | 563 | 980 | 1439 | 5.18e-13 | 73.9 |
MS.gene94365.t1 | AT2G46020 | 23.752 | 501 | 318 | 19 | 86 | 563 | 980 | 1439 | 5.18e-13 | 73.9 |
MS.gene94365.t1 | AT2G46020 | 23.752 | 501 | 318 | 19 | 86 | 563 | 980 | 1439 | 5.18e-13 | 73.9 |
MS.gene94365.t1 | AT3G06400 | 30.088 | 113 | 78 | 1 | 446 | 557 | 504 | 616 | 5.26e-13 | 73.6 |
MS.gene94365.t1 | AT5G18620 | 29.730 | 111 | 77 | 1 | 449 | 558 | 512 | 622 | 5.32e-13 | 73.6 |
MS.gene94365.t1 | AT2G46020 | 23.904 | 502 | 317 | 20 | 86 | 563 | 980 | 1440 | 6.45e-13 | 73.6 |
MS.gene94365.t1 | AT2G46020 | 23.904 | 502 | 317 | 20 | 86 | 563 | 980 | 1440 | 6.45e-13 | 73.6 |
MS.gene94365.t1 | AT2G46020 | 23.904 | 502 | 317 | 20 | 86 | 563 | 980 | 1440 | 6.45e-13 | 73.6 |
MS.gene94365.t1 | AT1G11100 | 36.697 | 109 | 69 | 0 | 450 | 558 | 930 | 1038 | 7.59e-13 | 73.2 |
MS.gene94365.t1 | AT1G11100 | 36.697 | 109 | 69 | 0 | 450 | 558 | 974 | 1082 | 7.90e-13 | 73.2 |
MS.gene94365.t1 | AT1G11100 | 36.697 | 109 | 69 | 0 | 450 | 558 | 1073 | 1181 | 8.34e-13 | 73.2 |
MS.gene94365.t1 | AT1G11100 | 36.697 | 109 | 69 | 0 | 450 | 558 | 1116 | 1224 | 8.65e-13 | 73.2 |
MS.gene94365.t1 | AT1G11100 | 36.697 | 109 | 69 | 0 | 450 | 558 | 1117 | 1225 | 8.88e-13 | 73.2 |
MS.gene94365.t1 | AT1G61140 | 35.780 | 109 | 70 | 0 | 450 | 558 | 967 | 1075 | 6.86e-12 | 70.1 |
MS.gene94365.t1 | AT1G50410 | 38.835 | 103 | 63 | 0 | 450 | 552 | 828 | 930 | 7.67e-12 | 70.1 |
MS.gene94365.t1 | AT1G50410 | 38.835 | 103 | 63 | 0 | 450 | 552 | 828 | 930 | 7.67e-12 | 70.1 |
MS.gene94365.t1 | AT1G50410 | 38.835 | 103 | 63 | 0 | 450 | 552 | 828 | 930 | 7.67e-12 | 70.1 |
MS.gene94365.t1 | AT1G61140 | 35.780 | 109 | 70 | 0 | 450 | 558 | 1125 | 1233 | 7.85e-12 | 70.1 |
Find 179 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACACCTCTATACGTGTATTT+TGG | 0.109557 | 3.2:-13275563 | MS.gene94365:CDS |
GGGCATCTTGTTAGATTTAC+AGG | 0.185075 | 3.2:+13285710 | None:intergenic |
CAAATGAGTGGAAGAATTTA+AGG | 0.191626 | 3.2:-13275390 | MS.gene94365:CDS |
TACAAAGAGGCTCATCTTTC+GGG | 0.195832 | 3.2:+13274995 | None:intergenic |
CTTATAATTTGCCGGCGTTT+TGG | 0.210586 | 3.2:+13283317 | None:intergenic |
ATCAGATGCTGTTTGGAAAA+AGG | 0.213049 | 3.2:-13275073 | MS.gene94365:CDS |
TGTTTATAGGAACGCTCTTC+TGG | 0.244027 | 3.2:-13275419 | MS.gene94365:CDS |
CAGATTAAAATTGCGATAAT+AGG | 0.245191 | 3.2:-13278384 | MS.gene94365:CDS |
AGGTGTATCCTTCCGGTATA+TGG | 0.246706 | 3.2:+13275580 | None:intergenic |
CTTGGAATTGCAAAACTATC+TGG | 0.246743 | 3.2:-13281518 | MS.gene94365:CDS |
TAAGAAATGACCACAATTCT+AGG | 0.246998 | 3.2:+13285689 | None:intergenic |
TGTCTCATTGCTGATGAAAA+TGG | 0.282279 | 3.2:-13287065 | MS.gene94365:CDS |
AAGCGTATAGTTCTGCTATC+AGG | 0.292142 | 3.2:-13284925 | MS.gene94365:CDS |
TTTAGGCCAGGCTTCAGTTT+TGG | 0.294535 | 3.2:-13276365 | MS.gene94365:CDS |
TTACAAAGAGGCTCATCTTT+CGG | 0.295115 | 3.2:+13274994 | None:intergenic |
GGTGTTCTAGCAGCAGGTTT+TGG | 0.317520 | 3.2:-13278363 | MS.gene94365:CDS |
AGCACAAGATGTTGTGTTCT+TGG | 0.322306 | 3.2:-13278325 | MS.gene94365:CDS |
GATTTACAGGATTGTCTTGA+TGG | 0.323496 | 3.2:+13285723 | None:intergenic |
TCAAGGATAACTCTGTTTAT+AGG | 0.330438 | 3.2:-13275432 | MS.gene94365:CDS |
TCATTCCATCCACTTATTGC+AGG | 0.343187 | 3.2:-13281479 | MS.gene94365:CDS |
GATTGACAGGGACTAATAAA+TGG | 0.346790 | 3.2:-13275147 | MS.gene94365:intron |
ATGTTCTGAAGAGAGTTTAG+AGG | 0.349221 | 3.2:-13276302 | MS.gene94365:CDS |
ATACCATGCTTCATCGTCTA+AGG | 0.352240 | 3.2:-13285667 | MS.gene94365:CDS |
TCATCATCGTTCAAGTGTTC+TGG | 0.353669 | 3.2:+13287188 | None:intergenic |
AAGTCAGAGTGCTAATATTA+TGG | 0.357570 | 3.2:-13276506 | MS.gene94365:intron |
AGATATGCCTTTGGACAGTT+TGG | 0.357967 | 3.2:-13283046 | MS.gene94365:CDS |
AGATATGCCTTTGGACAGTT+TGG | 0.357967 | 3.2:-13283210 | MS.gene94365:CDS |
TACTGCGGATTGTCTATCTC+TGG | 0.359167 | 3.2:+13279764 | None:intergenic |
TGTTGAGAAGCTTTCACATT+TGG | 0.361870 | 3.2:-13287234 | MS.gene94365:CDS |
GCAACAGTCTTATAATTTGC+CGG | 0.363054 | 3.2:+13283309 | None:intergenic |
TTCATCAGATAAATATGTTA+TGG | 0.368855 | 3.2:-13284654 | MS.gene94365:intron |
CCTTACCATCAGATGCTGTT+TGG | 0.369976 | 3.2:-13275080 | MS.gene94365:CDS |
AGTGCTTCCTGCATAGATTT+AGG | 0.371417 | 3.2:-13276382 | MS.gene94365:CDS |
AAAACCATTACAACTTCCTT+TGG | 0.373386 | 3.2:-13275341 | MS.gene94365:CDS |
AACTATCTGGGTTTCGTGAA+TGG | 0.374844 | 3.2:-13281505 | MS.gene94365:CDS |
AGATATACCTCTGGACAGTT+TGG | 0.391703 | 3.2:-13282882 | MS.gene94365:CDS |
GAAAGCCTGTGTGTTTAAAT+TGG | 0.396757 | 3.2:-13287333 | MS.gene94365:CDS |
CAATGTTCTTCGGCTTCAAC+AGG | 0.399760 | 3.2:+13276117 | None:intergenic |
AAAGGCGGAGATTGAGGTTG+AGG | 0.400615 | 3.2:-13287282 | MS.gene94365:CDS |
GAGCCCAACAGTGATGCTTC+AGG | 0.413054 | 3.2:-13278292 | MS.gene94365:intron |
CAAAGCCAGATTCATCATCT+TGG | 0.416790 | 3.2:+13276539 | None:intergenic |
AGTTAATTCTCTGCGGTTTG+AGG | 0.425860 | 3.2:-13276085 | MS.gene94365:intron |
CGTATAGAGGTGTATCCTTC+CGG | 0.426038 | 3.2:+13275573 | None:intergenic |
GCAAACCAAGATGATGAATC+TGG | 0.427885 | 3.2:-13276544 | MS.gene94365:CDS |
TTGAGGTTGAGGAGATTCCT+TGG | 0.432590 | 3.2:-13287271 | MS.gene94365:CDS |
CCAAACAGCATCTGATGGTA+AGG | 0.440110 | 3.2:+13275080 | None:intergenic |
TTGATGAGAACAATGTTCTT+CGG | 0.441496 | 3.2:+13276107 | None:intergenic |
ATTGAACGCAATAAGTTACT+TGG | 0.442871 | 3.2:-13275364 | MS.gene94365:CDS |
ACGGCGCATGACTCCTTTAG+TGG | 0.447491 | 3.2:-13275115 | MS.gene94365:CDS |
GTTACTAAAGCAAACTGTTA+TGG | 0.448864 | 3.2:-13283863 | MS.gene94365:intron |
TGCTAGTGAAGATATGCCTT+TGG | 0.449082 | 3.2:-13283055 | MS.gene94365:CDS |
TGCTAGTGAAGATATGCCTT+TGG | 0.449082 | 3.2:-13283219 | MS.gene94365:CDS |
GAACCTGAAGCATCACTGTT+GGG | 0.450875 | 3.2:+13278289 | None:intergenic |
GGGACTTGGGAAGACACTTC+AGG | 0.451048 | 3.2:-13287044 | MS.gene94365:intron |
TTTAAACCATCCATTTGAAA+CGG | 0.454315 | 3.2:+13287113 | None:intergenic |
CAGGAGTTTATATGTGAGAA+AGG | 0.454475 | 3.2:-13279822 | MS.gene94365:CDS |
TTCTCTGATCCTGCAATAAG+TGG | 0.456641 | 3.2:+13281470 | None:intergenic |
TTTCAGGCTATAGCTATTGC+GGG | 0.456871 | 3.2:-13286715 | MS.gene94365:intron |
AAGCTTACTTATCAAGAGCT+TGG | 0.458665 | 3.2:-13281536 | MS.gene94365:CDS |
CTCAGCAACTCAAGGTCCTC+TGG | 0.460412 | 3.2:+13275499 | None:intergenic |
GTCTCATTGCTGATGAAAAT+GGG | 0.464111 | 3.2:-13287064 | MS.gene94365:CDS |
TTTATATGTGAGAAAGGAGT+AGG | 0.465878 | 3.2:-13279816 | MS.gene94365:CDS |
TTATTCAAAGGGCATTCGCT+TGG | 0.471088 | 3.2:-13283899 | MS.gene94365:CDS |
TTGTGATCTCAAATATATCA+AGG | 0.471475 | 3.2:-13284495 | MS.gene94365:CDS |
AATATTACCGAGGTGAATAT+CGG | 0.474158 | 3.2:+13286591 | None:intergenic |
TGTATTGTTGCCGTTTCAAA+TGG | 0.475840 | 3.2:-13287123 | MS.gene94365:CDS |
TTGGAATTGCAAAACTATCT+GGG | 0.476468 | 3.2:-13281517 | MS.gene94365:CDS |
TTCAAAGGGCATTCGCTTGG+AGG | 0.476749 | 3.2:-13283896 | MS.gene94365:CDS |
TTGCTGATGAAAATGGGACT+TGG | 0.477813 | 3.2:-13287058 | MS.gene94365:CDS |
TGAGGACAGAGCTCATCGAC+GGG | 0.479171 | 3.2:-13277335 | MS.gene94365:CDS |
CATGAATACCGCAAAACAGC+AGG | 0.480010 | 3.2:+13286655 | None:intergenic |
TTATAAGACTGTTGCTGAAG+AGG | 0.480728 | 3.2:-13283301 | MS.gene94365:CDS |
AATACATCAAGTAAACTCTT+AGG | 0.483653 | 3.2:+13287140 | None:intergenic |
GCGGGATGTTTCATCGATGA+AGG | 0.487565 | 3.2:-13286697 | MS.gene94365:CDS |
ACAGCCAAAGGAAGTTGTAA+TGG | 0.489930 | 3.2:+13275337 | None:intergenic |
TTTGTTGTCCCCAACAAACC+TGG | 0.491084 | 3.2:+13284539 | None:intergenic |
GTATTTCAGGATTATTCAAA+GGG | 0.492760 | 3.2:-13283910 | MS.gene94365:intron |
TGCTAGTGAAGATATACCTC+TGG | 0.497322 | 3.2:-13282891 | MS.gene94365:CDS |
ATAATAGGTGTTCTAGCAGC+AGG | 0.500174 | 3.2:-13278369 | MS.gene94365:CDS |
TAGAAGTGGCCGTGGTAAGA+AGG | 0.500937 | 3.2:-13275043 | MS.gene94365:CDS |
TTCATTTGATTGTCTTGCAG+AGG | 0.501850 | 3.2:+13276573 | None:intergenic |
TTGAACGATGATGAGGTTGA+TGG | 0.501950 | 3.2:-13287179 | MS.gene94365:CDS |
TTTGGAAGGGAGGTGGACTC+TGG | 0.502892 | 3.2:-13287216 | MS.gene94365:CDS |
TGCATTAGTTGAAACACAGT+TGG | 0.503217 | 3.2:-13276605 | MS.gene94365:CDS |
GTACTCCGTCAAGAACTTTG+TGG | 0.504322 | 3.2:+13281417 | None:intergenic |
AAAACTGAGCATACCTCTCC+TGG | 0.504941 | 3.2:+13285563 | None:intergenic |
TTCCATCCAAAACTGAAGCC+TGG | 0.505181 | 3.2:+13276359 | None:intergenic |
TACCCAAAATACACGTATAG+AGG | 0.507355 | 3.2:+13275560 | None:intergenic |
TTCGGCTTCAACAGGATGAG+TGG | 0.507699 | 3.2:+13276125 | None:intergenic |
AGAGCATGCTTGAGCGTAAG+TGG | 0.512459 | 3.2:-13285643 | MS.gene94365:CDS |
TGTATTTCAGGATTATTCAA+AGG | 0.512908 | 3.2:-13283911 | MS.gene94365:intron |
GGTGTATCCTTCCGGTATAT+GGG | 0.514342 | 3.2:+13275581 | None:intergenic |
TAATAAATGGTGGAAGCAAA+CGG | 0.515121 | 3.2:-13275134 | MS.gene94365:CDS |
GTGTGCTGACCTTGTTGTTG+TGG | 0.515781 | 3.2:+13275284 | None:intergenic |
GTTGTTAAAGGCGGAGATTG+AGG | 0.521428 | 3.2:-13287288 | MS.gene94365:CDS |
CAAAGTTCTTGACGGAGTAC+AGG | 0.527095 | 3.2:-13281414 | MS.gene94365:intron |
CATCACCACAAAGTTCTTGA+CGG | 0.529330 | 3.2:-13281422 | MS.gene94365:CDS |
GGACAAAGATAACGTAATAG+AGG | 0.531035 | 3.2:-13276281 | MS.gene94365:intron |
GCATACCTCTCCTGGTTCTG+AGG | 0.535092 | 3.2:+13285571 | None:intergenic |
TAGTTGAAACACAGTTGGAT+AGG | 0.538260 | 3.2:-13276600 | MS.gene94365:CDS |
GAGAAGCTTTCACATTTGGA+AGG | 0.539040 | 3.2:-13287230 | MS.gene94365:CDS |
TCGGCTTCAACAGGATGAGT+GGG | 0.540783 | 3.2:+13276126 | None:intergenic |
AAATATATCAAGGGTGTCCA+AGG | 0.540918 | 3.2:-13284485 | MS.gene94365:CDS |
AGCTTTCACATTTGGAAGGG+AGG | 0.543505 | 3.2:-13287226 | MS.gene94365:CDS |
AGAACCTGAAGCATCACTGT+TGG | 0.544033 | 3.2:+13278288 | None:intergenic |
TTTCACATTTGGAAGGGAGG+TGG | 0.544102 | 3.2:-13287223 | MS.gene94365:CDS |
GTTTATCTTAGAAGTGGCCG+TGG | 0.546004 | 3.2:-13275051 | MS.gene94365:CDS |
TTGTTGCCGTTTCAAATGGA+TGG | 0.547882 | 3.2:-13287119 | MS.gene94365:CDS |
CAGGGACACCTTCTTTGTCA+AGG | 0.547926 | 3.2:-13284906 | MS.gene94365:intron |
TCATTTGATTGTCTTGCAGA+GGG | 0.553995 | 3.2:+13276574 | None:intergenic |
AGCGTATAGTTCTGCTATCA+GGG | 0.554557 | 3.2:-13284924 | MS.gene94365:CDS |
GGCTACAACCTTGACAAAGA+AGG | 0.555146 | 3.2:+13284898 | None:intergenic |
CTTCAGGTTAGCCCATATAC+CGG | 0.555170 | 3.2:-13275592 | MS.gene94365:intron |
CTGATCCTGCAATAAGTGGA+TGG | 0.555571 | 3.2:+13281474 | None:intergenic |
AGCCTGGCCTAAATCTATGC+AGG | 0.556639 | 3.2:+13276375 | None:intergenic |
TTAAAGTTTGCACTTAGAAG+AGG | 0.558675 | 3.2:-13287095 | MS.gene94365:CDS |
TTTACTCAAACAAGCGCGGG+TGG | 0.559462 | 3.2:-13287356 | MS.gene94365:CDS |
AAGTTTGCACTTAGAAGAGG+TGG | 0.560449 | 3.2:-13287092 | MS.gene94365:CDS |
CTGCTGATGCTGATGAGAAA+CGG | 0.561433 | 3.2:-13275474 | MS.gene94365:CDS |
CTTCAACAGGATGAGTGGGC+TGG | 0.562424 | 3.2:+13276130 | None:intergenic |
ACTGCGGATTGTCTATCTCT+GGG | 0.565165 | 3.2:+13279765 | None:intergenic |
TTCCTGCATAGATTTAGGCC+AGG | 0.566280 | 3.2:-13276377 | MS.gene94365:CDS |
TTTACAGGCCAGGTTTGTTG+GGG | 0.568030 | 3.2:-13284547 | MS.gene94365:intron |
GGATAGCTGATGTCCACTAA+AGG | 0.569846 | 3.2:+13275102 | None:intergenic |
CGTTTCTCATCAGCATCAGC+AGG | 0.572257 | 3.2:+13275475 | None:intergenic |
AACAAGATGCCCTAGAATTG+TGG | 0.574883 | 3.2:-13285699 | MS.gene94365:CDS |
AGAAGCTTTCACATTTGGAA+GGG | 0.575630 | 3.2:-13287229 | MS.gene94365:CDS |
AGCATCACTGTTGGGCTCTG+AGG | 0.575672 | 3.2:+13278297 | None:intergenic |
TGCTGATGAAAATGGGACTT+GGG | 0.577528 | 3.2:-13287057 | MS.gene94365:CDS |
TTACCGAGGTGAATATCGGC+AGG | 0.578025 | 3.2:+13286595 | None:intergenic |
AAGAAATGACCACAATTCTA+GGG | 0.578562 | 3.2:+13285690 | None:intergenic |
CTTGTAGATAAGGCGGCTCA+AGG | 0.580311 | 3.2:-13283363 | MS.gene94365:intron |
AACCTCATTTCGATCATCGC+CGG | 0.580826 | 3.2:-13279742 | MS.gene94365:CDS |
TAGCACAATTCGACAGCCAA+AGG | 0.582459 | 3.2:+13275325 | None:intergenic |
ATCTGATGAAATATGTCGAA+CGG | 0.582749 | 3.2:+13284667 | None:intergenic |
GATGAGGTTGATGGTTTGAT+CGG | 0.583163 | 3.2:-13287170 | MS.gene94365:CDS |
CTTGTTTGAGTAAAATGTGA+TGG | 0.583477 | 3.2:+13287365 | None:intergenic |
CTCATCAAGTTAATTCTCTG+CGG | 0.587056 | 3.2:-13276092 | MS.gene94365:CDS |
CAAACAGCATCTGATGGTAA+GGG | 0.587626 | 3.2:+13275081 | None:intergenic |
TATAGAGTCTGCATCTGTCA+AGG | 0.592394 | 3.2:-13275449 | MS.gene94365:CDS |
TTAACAACTTCAAAACGCTA+CGG | 0.595755 | 3.2:+13287303 | None:intergenic |
CTGAGGACAGAGCTCATCGA+CGG | 0.596186 | 3.2:-13277336 | MS.gene94365:CDS |
CATATACATATTCTGTGCAA+AGG | 0.598271 | 3.2:-13277293 | MS.gene94365:intron |
GATAAAGGCTGTTCTTGATG+TGG | 0.600626 | 3.2:-13284959 | MS.gene94365:CDS |
CAGCAGGACTCAGCAACTCA+AGG | 0.605288 | 3.2:+13275491 | None:intergenic |
ACAAAGAAAACCTCAGAACC+AGG | 0.605807 | 3.2:-13285581 | MS.gene94365:CDS |
ATATCGGCAGGCAAGCAGAA+AGG | 0.608188 | 3.2:+13286607 | None:intergenic |
CTCCGGCGATGATCGAAATG+AGG | 0.609409 | 3.2:+13279740 | None:intergenic |
GACAGTTTGGATGAACATGA+TGG | 0.611362 | 3.2:-13283033 | MS.gene94365:intron |
GACAGTTTGGATGAACATGA+TGG | 0.611362 | 3.2:-13283197 | MS.gene94365:intron |
TGTGATCTCAAATATATCAA+GGG | 0.612762 | 3.2:-13284494 | MS.gene94365:CDS |
CTTCCTTAGACGATGAAGCA+TGG | 0.613591 | 3.2:+13285664 | None:intergenic |
GCAACTCAAGGTCCTCTGGT+CGG | 0.619233 | 3.2:+13275503 | None:intergenic |
TTACTCAAACAAGCGCGGGT+GGG | 0.622249 | 3.2:-13287355 | MS.gene94365:CDS |
GTCTGCCAATTTAAACACAC+AGG | 0.622878 | 3.2:+13287328 | None:intergenic |
AAGGGAGGTGGACTCTGGTG+AGG | 0.623482 | 3.2:-13287211 | MS.gene94365:CDS |
ACAACATTGAAAGTGCTCCA+AGG | 0.624995 | 3.2:+13287254 | None:intergenic |
ATTATGTCTTGTAGATAAGG+CGG | 0.626099 | 3.2:-13283370 | MS.gene94365:intron |
TAATGAAAATTTCCGACCAG+AGG | 0.628549 | 3.2:-13275515 | MS.gene94365:CDS |
TGACAGGGACTAATAAATGG+TGG | 0.637850 | 3.2:-13275144 | MS.gene94365:intron |
GAGCATGCTTGAGCGTAAGT+GGG | 0.638392 | 3.2:-13285642 | MS.gene94365:CDS |
GAAAACCTCAGAACCAGGAG+AGG | 0.640173 | 3.2:-13285576 | MS.gene94365:intron |
AGGTTAGCCCATATACCGGA+AGG | 0.642602 | 3.2:-13275588 | MS.gene94365:CDS |
AGGACAGAGCTCATCGACGG+GGG | 0.648584 | 3.2:-13277333 | MS.gene94365:CDS |
CTCATTTCGATCATCGCCGG+AGG | 0.648872 | 3.2:-13279739 | MS.gene94365:intron |
AACAGTTACCTCCAAAACGC+CGG | 0.652750 | 3.2:-13283328 | MS.gene94365:CDS |
TGTTCATCCAAACTGTCCAA+AGG | 0.654789 | 3.2:+13283039 | None:intergenic |
TGTTCATCCAAACTGTCCAA+AGG | 0.654789 | 3.2:+13283203 | None:intergenic |
GAGGACAGAGCTCATCGACG+GGG | 0.660829 | 3.2:-13277334 | MS.gene94365:CDS |
AGAACACTTGAACGATGATG+AGG | 0.663272 | 3.2:-13287186 | MS.gene94365:CDS |
TTGCCTGCCGATATTCACCT+CGG | 0.667730 | 3.2:-13286598 | MS.gene94365:intron |
ATGAATACCGCAAAACAGCA+GGG | 0.670904 | 3.2:+13286656 | None:intergenic |
AAGTAATAACCACAACAACA+AGG | 0.675819 | 3.2:-13275293 | MS.gene94365:intron |
CATGGGCTGAAGAAATTGAG+CGG | 0.684516 | 3.2:-13286636 | MS.gene94365:CDS |
GACAGTTTGGATGAACATGA+TGG | 0.685395 | 3.2:-13282869 | MS.gene94365:intron |
ATGTTGCTTCCAGATGAATG+TGG | 0.696547 | 3.2:-13287390 | None:intergenic |
TGTTCATCCAAACTGTCCAG+AGG | 0.703707 | 3.2:+13282875 | None:intergenic |
GGGCTGAAGAAATTGAGCGG+TGG | 0.705602 | 3.2:-13286633 | MS.gene94365:CDS |
TGATCGAAATGAGGTTACTG+CGG | 0.719986 | 3.2:+13279749 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 13274974 | 13287399 | 13274974 | ID=MS.gene94365 |
chr3.2 | mRNA | 13274974 | 13287399 | 13274974 | ID=MS.gene94365.t1;Parent=MS.gene94365 |
chr3.2 | exon | 13287045 | 13287399 | 13287045 | ID=MS.gene94365.t1.exon1;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13287045 | 13287399 | 13287045 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13286599 | 13286724 | 13286599 | ID=MS.gene94365.t1.exon2;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13286599 | 13286724 | 13286599 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13285577 | 13285752 | 13285577 | ID=MS.gene94365.t1.exon3;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13285577 | 13285752 | 13285577 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13284907 | 13284980 | 13284907 | ID=MS.gene94365.t1.exon4;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13284907 | 13284980 | 13284907 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13284655 | 13284690 | 13284655 | ID=MS.gene94365.t1.exon5;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13284655 | 13284690 | 13284655 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13284472 | 13284562 | 13284472 | ID=MS.gene94365.t1.exon6;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13284472 | 13284562 | 13284472 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13283864 | 13283923 | 13283864 | ID=MS.gene94365.t1.exon7;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13283864 | 13283923 | 13283864 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13283198 | 13283378 | 13283198 | ID=MS.gene94365.t1.exon8;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13283198 | 13283378 | 13283198 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13283034 | 13283108 | 13283034 | ID=MS.gene94365.t1.exon9;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13283034 | 13283108 | 13283034 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13282870 | 13282944 | 13282870 | ID=MS.gene94365.t1.exon10;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13282870 | 13282944 | 13282870 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13281415 | 13281560 | 13281415 | ID=MS.gene94365.t1.exon11;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13281415 | 13281560 | 13281415 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13279740 | 13279841 | 13279740 | ID=MS.gene94365.t1.exon12;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13279740 | 13279841 | 13279740 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13278293 | 13278403 | 13278293 | ID=MS.gene94365.t1.exon13;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13278293 | 13278403 | 13278293 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13277294 | 13277359 | 13277294 | ID=MS.gene94365.t1.exon14;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13277294 | 13277359 | 13277294 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13276507 | 13276698 | 13276507 | ID=MS.gene94365.t1.exon15;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13276507 | 13276698 | 13276507 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13276282 | 13276410 | 13276282 | ID=MS.gene94365.t1.exon16;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13276282 | 13276410 | 13276282 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13276086 | 13276190 | 13276086 | ID=MS.gene94365.t1.exon17;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13276086 | 13276190 | 13276086 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13275294 | 13275608 | 13275294 | ID=MS.gene94365.t1.exon18;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13275294 | 13275608 | 13275294 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
chr3.2 | exon | 13274974 | 13275160 | 13274974 | ID=MS.gene94365.t1.exon19;Parent=MS.gene94365.t1 |
chr3.2 | CDS | 13274974 | 13275160 | 13274974 | ID=cds.MS.gene94365.t1;Parent=MS.gene94365.t1 |
Gene Sequence |
Protein sequence |