Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94366.t1 | RHN66007.1 | 99.2 | 594 | 5 | 0 | 2 | 595 | 101 | 694 | 2.40E-306 | 1060.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94366.t1 | Q0P4U8 | 31.7 | 558 | 297 | 14 | 21 | 576 | 378 | 853 | 3.7e-66 | 254.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94366.t1 | A0A396ISU0 | 99.2 | 594 | 5 | 0 | 2 | 595 | 101 | 694 | 1.7e-306 | 1060.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene94366.t1 | TR | SNF2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94366.t1 | MTR_4g124090 | 34.169 | 319 | 178 | 7 | 79 | 379 | 165 | 469 | 3.70e-46 | 174 |
MS.gene94366.t1 | MTR_4g124090 | 40.559 | 143 | 85 | 0 | 449 | 591 | 484 | 626 | 3.39e-27 | 117 |
MS.gene94366.t1 | MTR_1g035330 | 23.529 | 595 | 364 | 17 | 35 | 570 | 143 | 705 | 4.36e-31 | 129 |
MS.gene94366.t1 | MTR_5g004720 | 24.008 | 529 | 327 | 19 | 84 | 570 | 180 | 675 | 3.51e-18 | 89.4 |
MS.gene94366.t1 | MTR_7g090960 | 34.211 | 114 | 75 | 0 | 453 | 566 | 1210 | 1323 | 1.22e-15 | 81.6 |
MS.gene94366.t1 | MTR_7g090960 | 26.136 | 264 | 163 | 10 | 79 | 324 | 569 | 818 | 8.75e-14 | 75.5 |
MS.gene94366.t1 | MTR_7g090960 | 34.211 | 114 | 75 | 0 | 453 | 566 | 1129 | 1242 | 1.27e-15 | 81.3 |
MS.gene94366.t1 | MTR_7g090960 | 26.136 | 264 | 163 | 10 | 79 | 324 | 488 | 737 | 1.28e-13 | 75.1 |
MS.gene94366.t1 | MTR_1g053955 | 33.043 | 115 | 77 | 0 | 453 | 567 | 1080 | 1194 | 5.82e-15 | 79.3 |
MS.gene94366.t1 | MTR_1g053955 | 28.333 | 240 | 145 | 10 | 107 | 335 | 543 | 766 | 5.12e-12 | 69.7 |
MS.gene94366.t1 | MTR_4g078460 | 33.333 | 123 | 82 | 0 | 444 | 566 | 816 | 938 | 1.63e-14 | 77.8 |
MS.gene94366.t1 | MTR_2g020000 | 31.933 | 119 | 80 | 1 | 449 | 566 | 506 | 624 | 1.91e-14 | 77.4 |
MS.gene94366.t1 | MTR_2g020000 | 24.354 | 271 | 156 | 10 | 81 | 331 | 184 | 425 | 1.68e-12 | 71.2 |
MS.gene94366.t1 | MTR_4g078495 | 33.333 | 123 | 82 | 0 | 444 | 566 | 530 | 652 | 2.16e-14 | 77.0 |
MS.gene94366.t1 | MTR_4g035100 | 28.788 | 264 | 160 | 10 | 79 | 324 | 1441 | 1694 | 2.95e-14 | 77.0 |
MS.gene94366.t1 | MTR_4g035100 | 32.558 | 129 | 79 | 2 | 446 | 566 | 1818 | 1946 | 5.82e-13 | 72.8 |
MS.gene94366.t1 | MTR_4g035100 | 28.788 | 264 | 160 | 10 | 79 | 324 | 1441 | 1694 | 2.95e-14 | 77.0 |
MS.gene94366.t1 | MTR_4g035100 | 32.558 | 129 | 79 | 2 | 446 | 566 | 1818 | 1946 | 5.63e-13 | 73.2 |
MS.gene94366.t1 | MTR_1g115215 | 36.641 | 131 | 75 | 1 | 433 | 563 | 875 | 997 | 3.09e-14 | 76.6 |
MS.gene94366.t1 | MTR_4g118845 | 31.092 | 119 | 81 | 1 | 449 | 566 | 316 | 434 | 3.16e-14 | 76.6 |
MS.gene94366.t1 | MTR_4g118845 | 24.409 | 254 | 157 | 9 | 91 | 331 | 4 | 235 | 6.83e-11 | 65.9 |
MS.gene94366.t1 | MTR_4g118845 | 31.092 | 119 | 81 | 1 | 449 | 566 | 503 | 621 | 4.55e-14 | 76.3 |
MS.gene94366.t1 | MTR_4g118845 | 24.723 | 271 | 155 | 10 | 81 | 331 | 181 | 422 | 4.35e-11 | 66.6 |
MS.gene94366.t1 | MTR_5g020000 | 34.286 | 105 | 68 | 1 | 453 | 556 | 524 | 628 | 3.78e-12 | 69.7 |
MS.gene94366.t1 | MTR_5g020000 | 25.194 | 258 | 167 | 11 | 88 | 329 | 184 | 431 | 7.81e-12 | 68.9 |
MS.gene94366.t1 | MTR_2g012830 | 35.088 | 114 | 74 | 0 | 453 | 566 | 1150 | 1263 | 4.32e-12 | 70.1 |
MS.gene94366.t1 | MTR_4g096930 | 26.282 | 312 | 182 | 14 | 47 | 333 | 691 | 979 | 1.46e-11 | 68.6 |
MS.gene94366.t1 | MTR_5g005840 | 24.870 | 193 | 124 | 5 | 88 | 267 | 363 | 547 | 2.95e-11 | 67.4 |
MS.gene94366.t1 | MTR_4g049500 | 26.590 | 173 | 123 | 2 | 430 | 601 | 764 | 933 | 7.91e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94366.t1 | AT5G07810 | 61.093 | 604 | 198 | 6 | 6 | 595 | 118 | 698 | 0.0 | 754 |
MS.gene94366.t1 | AT1G48310 | 32.768 | 531 | 274 | 10 | 76 | 590 | 160 | 623 | 1.16e-80 | 268 |
MS.gene94366.t1 | AT1G48310 | 32.768 | 531 | 274 | 10 | 76 | 590 | 165 | 628 | 1.33e-80 | 268 |
MS.gene94366.t1 | AT1G48310 | 33.075 | 517 | 263 | 10 | 76 | 576 | 160 | 609 | 8.33e-79 | 262 |
MS.gene94366.t1 | AT1G48310 | 30.340 | 412 | 204 | 10 | 76 | 471 | 160 | 504 | 6.56e-47 | 173 |
MS.gene94366.t1 | AT3G54280 | 27.533 | 523 | 304 | 19 | 91 | 566 | 1485 | 1979 | 5.23e-31 | 130 |
MS.gene94366.t1 | AT3G54280 | 27.533 | 523 | 304 | 19 | 91 | 566 | 1454 | 1948 | 9.30e-31 | 129 |
MS.gene94366.t1 | AT4G31900 | 24.104 | 502 | 302 | 15 | 81 | 566 | 218 | 656 | 3.03e-22 | 102 |
MS.gene94366.t1 | AT4G31900 | 24.104 | 502 | 302 | 15 | 81 | 566 | 218 | 656 | 3.29e-22 | 102 |
MS.gene94366.t1 | AT4G31900 | 24.104 | 502 | 302 | 15 | 81 | 566 | 177 | 615 | 3.54e-22 | 102 |
MS.gene94366.t1 | AT3G19210 | 24.231 | 520 | 337 | 17 | 84 | 570 | 176 | 671 | 8.86e-20 | 94.4 |
MS.gene94366.t1 | AT3G19210 | 24.231 | 520 | 337 | 17 | 84 | 570 | 176 | 671 | 1.37e-19 | 94.0 |
MS.gene94366.t1 | AT3G19210 | 24.131 | 518 | 338 | 16 | 84 | 570 | 176 | 669 | 1.45e-19 | 94.0 |
MS.gene94366.t1 | AT5G63950 | 24.715 | 526 | 334 | 22 | 80 | 570 | 369 | 867 | 2.51e-17 | 86.7 |
MS.gene94366.t1 | AT2G02090 | 25.623 | 281 | 167 | 9 | 87 | 345 | 212 | 472 | 5.29e-17 | 85.5 |
MS.gene94366.t1 | AT2G02090 | 32.773 | 119 | 80 | 0 | 449 | 567 | 602 | 720 | 3.75e-13 | 73.2 |
MS.gene94366.t1 | AT5G63950 | 24.905 | 526 | 316 | 22 | 80 | 570 | 369 | 850 | 1.09e-16 | 84.7 |
MS.gene94366.t1 | AT3G12810 | 33.884 | 121 | 80 | 0 | 453 | 573 | 1093 | 1213 | 5.46e-16 | 82.8 |
MS.gene94366.t1 | AT3G12810 | 28.947 | 266 | 157 | 13 | 79 | 329 | 527 | 775 | 1.50e-11 | 68.6 |
MS.gene94366.t1 | AT3G12810 | 33.884 | 121 | 80 | 0 | 453 | 573 | 1089 | 1209 | 5.65e-16 | 82.8 |
MS.gene94366.t1 | AT3G12810 | 28.947 | 266 | 157 | 13 | 79 | 329 | 523 | 771 | 1.55e-11 | 68.6 |
MS.gene94366.t1 | AT3G57300 | 32.812 | 128 | 79 | 1 | 453 | 580 | 1224 | 1344 | 5.14e-15 | 79.7 |
MS.gene94366.t1 | AT3G57300 | 26.515 | 264 | 162 | 10 | 79 | 324 | 577 | 826 | 2.56e-13 | 73.9 |
MS.gene94366.t1 | AT3G57300 | 32.812 | 128 | 79 | 1 | 453 | 580 | 1224 | 1344 | 5.14e-15 | 79.7 |
MS.gene94366.t1 | AT3G57300 | 26.515 | 264 | 162 | 10 | 79 | 324 | 577 | 826 | 2.56e-13 | 73.9 |
MS.gene94366.t1 | AT3G57300 | 32.812 | 128 | 79 | 1 | 453 | 580 | 1257 | 1377 | 5.59e-15 | 79.3 |
MS.gene94366.t1 | AT3G20010 | 39.655 | 116 | 70 | 0 | 448 | 563 | 623 | 738 | 8.91e-15 | 78.6 |
MS.gene94366.t1 | AT3G20010 | 39.655 | 116 | 70 | 0 | 448 | 563 | 598 | 713 | 1.09e-14 | 78.2 |
MS.gene94366.t1 | AT3G20010 | 38.655 | 119 | 73 | 0 | 448 | 566 | 889 | 1007 | 2.40e-14 | 77.4 |
MS.gene94366.t1 | AT3G20010 | 38.655 | 119 | 73 | 0 | 448 | 566 | 889 | 1007 | 2.40e-14 | 77.4 |
MS.gene94366.t1 | AT3G20010 | 38.655 | 119 | 73 | 0 | 448 | 566 | 889 | 1007 | 2.40e-14 | 77.4 |
MS.gene94366.t1 | AT1G11100 | 36.842 | 114 | 72 | 0 | 453 | 566 | 930 | 1043 | 7.71e-14 | 75.5 |
MS.gene94366.t1 | AT1G11100 | 36.842 | 114 | 72 | 0 | 453 | 566 | 974 | 1087 | 7.90e-14 | 75.5 |
MS.gene94366.t1 | AT1G11100 | 36.842 | 114 | 72 | 0 | 453 | 566 | 1116 | 1229 | 8.36e-14 | 75.5 |
MS.gene94366.t1 | AT1G11100 | 36.842 | 114 | 72 | 0 | 453 | 566 | 1073 | 1186 | 8.71e-14 | 75.5 |
MS.gene94366.t1 | AT1G03750 | 32.759 | 116 | 78 | 0 | 451 | 566 | 544 | 659 | 9.02e-14 | 75.1 |
MS.gene94366.t1 | AT1G03750 | 26.394 | 269 | 154 | 14 | 80 | 321 | 131 | 382 | 1.41e-11 | 68.2 |
MS.gene94366.t1 | AT1G11100 | 36.842 | 114 | 72 | 0 | 453 | 566 | 1117 | 1230 | 9.11e-14 | 75.5 |
MS.gene94366.t1 | AT3G57300 | 26.515 | 264 | 162 | 10 | 79 | 324 | 577 | 826 | 2.32e-13 | 74.3 |
MS.gene94366.t1 | AT3G06400 | 29.412 | 119 | 83 | 1 | 449 | 566 | 504 | 622 | 3.39e-13 | 73.6 |
MS.gene94366.t1 | AT3G06400 | 24.912 | 285 | 158 | 11 | 74 | 331 | 168 | 423 | 1.06e-11 | 68.6 |
MS.gene94366.t1 | AT3G06400 | 29.412 | 119 | 83 | 1 | 449 | 566 | 504 | 622 | 3.45e-13 | 73.6 |
MS.gene94366.t1 | AT3G06400 | 24.912 | 285 | 158 | 11 | 74 | 331 | 168 | 423 | 9.85e-12 | 68.9 |
MS.gene94366.t1 | AT3G06400 | 29.412 | 119 | 83 | 1 | 449 | 566 | 504 | 622 | 3.48e-13 | 73.6 |
MS.gene94366.t1 | AT3G06400 | 24.912 | 285 | 158 | 11 | 74 | 331 | 168 | 423 | 1.02e-11 | 68.9 |
MS.gene94366.t1 | AT5G18620 | 29.204 | 113 | 79 | 1 | 452 | 563 | 512 | 624 | 4.49e-13 | 73.2 |
MS.gene94366.t1 | AT5G18620 | 25.092 | 271 | 154 | 10 | 81 | 331 | 187 | 428 | 1.51e-11 | 68.2 |
MS.gene94366.t1 | AT5G18620 | 29.204 | 113 | 79 | 1 | 452 | 563 | 512 | 624 | 4.56e-13 | 73.2 |
MS.gene94366.t1 | AT5G18620 | 25.092 | 271 | 154 | 10 | 81 | 331 | 187 | 428 | 1.64e-11 | 68.2 |
MS.gene94366.t1 | AT1G61140 | 36.937 | 111 | 70 | 0 | 453 | 563 | 967 | 1077 | 7.01e-13 | 72.4 |
MS.gene94366.t1 | AT1G61140 | 36.937 | 111 | 70 | 0 | 453 | 563 | 1125 | 1235 | 9.21e-13 | 72.4 |
MS.gene94366.t1 | AT1G50410 | 37.931 | 116 | 68 | 2 | 453 | 566 | 828 | 941 | 2.57e-12 | 70.5 |
MS.gene94366.t1 | AT1G50410 | 37.931 | 116 | 68 | 2 | 453 | 566 | 828 | 941 | 2.57e-12 | 70.5 |
MS.gene94366.t1 | AT1G50410 | 37.931 | 116 | 68 | 2 | 453 | 566 | 828 | 941 | 2.57e-12 | 70.5 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 742 | 1016 | 6.79e-12 | 69.7 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 742 | 1016 | 6.79e-12 | 69.7 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 743 | 1017 | 6.90e-12 | 69.7 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 743 | 1017 | 7.46e-12 | 69.3 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 742 | 1016 | 7.59e-12 | 69.3 |
MS.gene94366.t1 | AT2G28290 | 27.551 | 294 | 159 | 13 | 77 | 335 | 742 | 1016 | 8.40e-12 | 69.3 |
MS.gene94366.t1 | AT2G13370 | 31.452 | 124 | 84 | 1 | 444 | 566 | 948 | 1071 | 4.91e-11 | 66.6 |
MS.gene94366.t1 | AT2G13370 | 31.452 | 124 | 84 | 1 | 444 | 566 | 948 | 1071 | 4.91e-11 | 66.6 |
MS.gene94366.t1 | AT2G13370 | 31.452 | 124 | 84 | 1 | 444 | 566 | 948 | 1071 | 4.91e-11 | 66.6 |
Find 131 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGGCATCTTGTTAGATTTAC+AGG | 0.185075 | 3.1:-13906060 | None:intergenic |
CTTATAATTTGCCGGCGTTT+TGG | 0.210586 | 3.1:-13908454 | None:intergenic |
CAGATTAAAATTGCGATAAT+AGG | 0.245191 | 3.1:+13913390 | MS.gene94366:intron |
CTTGGAATTGCAAAACTATC+TGG | 0.246743 | 3.1:+13910253 | MS.gene94366:CDS |
TAAGAAATGACCACAATTCT+AGG | 0.246998 | 3.1:-13906081 | None:intergenic |
AAGCGTATAGTTCTGCTATC+AGG | 0.292142 | 3.1:+13906845 | MS.gene94366:CDS |
GGTGTTCTAGCAGCAGGTTT+TGG | 0.317520 | 3.1:+13913411 | MS.gene94366:CDS |
AGCACAAGATGTTGTGTTCT+TGG | 0.322306 | 3.1:+13913449 | MS.gene94366:CDS |
GATTTACAGGATTGTCTTGA+TGG | 0.323496 | 3.1:-13906047 | None:intergenic |
TCATTCCATCCACTTATTGC+AGG | 0.343187 | 3.1:+13910292 | MS.gene94366:CDS |
ATACCATGCTTCATCGTCTA+AGG | 0.352240 | 3.1:+13906103 | MS.gene94366:CDS |
TCATCATCGTTCAAGTGTTC+TGG | 0.353669 | 3.1:-13904583 | None:intergenic |
AGATATGCCTTTGGACAGTT+TGG | 0.357967 | 3.1:+13908561 | MS.gene94366:CDS |
AGATATGCCTTTGGACAGTT+TGG | 0.357967 | 3.1:+13908725 | MS.gene94366:CDS |
TACTGCGGATTGTCTATCTC+TGG | 0.359167 | 3.1:-13912010 | None:intergenic |
TGTTGAGAAGCTTTCACATT+TGG | 0.361870 | 3.1:+13904537 | MS.gene94366:CDS |
GCAACAGTCTTATAATTTGC+CGG | 0.363054 | 3.1:-13908462 | None:intergenic |
TTCATCAGATAAATATGTTA+TGG | 0.368855 | 3.1:+13907116 | MS.gene94366:CDS |
AACTATCTGGGTTTCGTGAA+TGG | 0.374844 | 3.1:+13910266 | MS.gene94366:CDS |
AGATATACCTCTGGACAGTT+TGG | 0.391703 | 3.1:+13908889 | MS.gene94366:CDS |
ATGTCTCATTGCTGATGAAA+TGG | 0.396737 | 3.1:+13904705 | MS.gene94366:CDS |
GAAAGCCTGTGTGTTTAAAT+TGG | 0.396757 | 3.1:+13904438 | MS.gene94366:CDS |
AAAGGCGGAGATTGAGGTTG+AGG | 0.400615 | 3.1:+13904489 | MS.gene94366:CDS |
GAGCCCAACAGTGATGCTTC+AGG | 0.413054 | 3.1:+13913482 | MS.gene94366:CDS |
ATGACCATCTGTAGGATACT+TGG | 0.422084 | 3.1:+13914583 | MS.gene94366:intron |
TTGAGGTTGAGGAGATTCCT+TGG | 0.432590 | 3.1:+13904500 | MS.gene94366:CDS |
GTTACTAAAGCAAACTGTTA+TGG | 0.448864 | 3.1:+13907908 | MS.gene94366:CDS |
TGCTAGTGAAGATATGCCTT+TGG | 0.449082 | 3.1:+13908552 | MS.gene94366:CDS |
TGCTAGTGAAGATATGCCTT+TGG | 0.449082 | 3.1:+13908716 | MS.gene94366:CDS |
GAACCTGAAGCATCACTGTT+GGG | 0.450875 | 3.1:-13913485 | None:intergenic |
GGGACTTGGGAAGACACTTC+AGG | 0.451048 | 3.1:+13904726 | MS.gene94366:CDS |
TTTAAACCATCCATTTGAAA+CGG | 0.454315 | 3.1:-13904658 | None:intergenic |
CAGGAGTTTATATGTGAGAA+AGG | 0.454475 | 3.1:+13911952 | MS.gene94366:intron |
TTCTCTGATCCTGCAATAAG+TGG | 0.456641 | 3.1:-13910301 | None:intergenic |
TTTCAGGCTATAGCTATTGC+GGG | 0.456871 | 3.1:+13905055 | MS.gene94366:intron |
AAGCTTACTTATCAAGAGCT+TGG | 0.458665 | 3.1:+13910235 | MS.gene94366:CDS |
TTTATATGTGAGAAAGGAGT+AGG | 0.465878 | 3.1:+13911958 | MS.gene94366:CDS |
ATTGCTGATGAAATGGGACT+TGG | 0.468973 | 3.1:+13904712 | MS.gene94366:CDS |
TTATTCAAAGGGCATTCGCT+TGG | 0.471088 | 3.1:+13907872 | MS.gene94366:CDS |
TTGTGATCTCAAATATATCA+AGG | 0.471475 | 3.1:+13907276 | MS.gene94366:CDS |
AATATTACCGAGGTGAATAT+CGG | 0.474158 | 3.1:-13905179 | None:intergenic |
TGTATTGTTGCCGTTTCAAA+TGG | 0.475840 | 3.1:+13904648 | MS.gene94366:CDS |
TTGGAATTGCAAAACTATCT+GGG | 0.476468 | 3.1:+13910254 | MS.gene94366:CDS |
TTCAAAGGGCATTCGCTTGG+AGG | 0.476749 | 3.1:+13907875 | MS.gene94366:CDS |
TGAGGACAGAGCTCATCGAC+GGG | 0.479171 | 3.1:+13914441 | MS.gene94366:CDS |
CATGAATACCGCAAAACAGC+AGG | 0.480010 | 3.1:-13905115 | None:intergenic |
TTATAAGACTGTTGCTGAAG+AGG | 0.480728 | 3.1:+13908470 | MS.gene94366:CDS |
TGTCTCATTGCTGATGAAAT+GGG | 0.482213 | 3.1:+13904706 | MS.gene94366:CDS |
AATACATCAAGTAAACTCTT+AGG | 0.483653 | 3.1:-13904631 | None:intergenic |
GCGGGATGTTTCATCGATGA+AGG | 0.487565 | 3.1:+13905073 | MS.gene94366:CDS |
GCAAATATGATGCGGTGAAA+GGG | 0.488899 | 3.1:+13914667 | MS.gene94366:CDS |
TTTGTTGTCCCCAACAAACC+TGG | 0.491084 | 3.1:-13907232 | None:intergenic |
GTATTTCAGGATTATTCAAA+GGG | 0.492760 | 3.1:+13907861 | MS.gene94366:intron |
TGCTAGTGAAGATATACCTC+TGG | 0.497322 | 3.1:+13908880 | MS.gene94366:CDS |
ATAATAGGTGTTCTAGCAGC+AGG | 0.500174 | 3.1:+13913405 | MS.gene94366:CDS |
TTGAACGATGATGAGGTTGA+TGG | 0.501950 | 3.1:+13904592 | MS.gene94366:CDS |
TTTGGAAGGGAGGTGGACTC+TGG | 0.502892 | 3.1:+13904555 | MS.gene94366:CDS |
GTACTCCGTCAAGAACTTTG+TGG | 0.504322 | 3.1:-13910354 | None:intergenic |
AAAACTGAGCATACCTCTCC+TGG | 0.504941 | 3.1:-13906207 | None:intergenic |
AGAGCATGCTTGAGCGTAAG+TGG | 0.512459 | 3.1:+13906127 | MS.gene94366:CDS |
TGTATTTCAGGATTATTCAA+AGG | 0.512908 | 3.1:+13907860 | MS.gene94366:intron |
GGCAAATATGATGCGGTGAA+AGG | 0.512960 | 3.1:+13914666 | MS.gene94366:CDS |
GTTGTTAAAGGCGGAGATTG+AGG | 0.521428 | 3.1:+13904483 | MS.gene94366:CDS |
CAAAGTTCTTGACGGAGTAC+AGG | 0.527095 | 3.1:+13910357 | MS.gene94366:CDS |
CATCACCACAAAGTTCTTGA+CGG | 0.529330 | 3.1:+13910349 | MS.gene94366:CDS |
GCATACCTCTCCTGGTTCTG+AGG | 0.535092 | 3.1:-13906199 | None:intergenic |
GAGAAGCTTTCACATTTGGA+AGG | 0.539040 | 3.1:+13904541 | MS.gene94366:CDS |
AAATATATCAAGGGTGTCCA+AGG | 0.540918 | 3.1:+13907286 | MS.gene94366:CDS |
TGACCATCTGTAGGATACTT+GGG | 0.541048 | 3.1:+13914584 | MS.gene94366:intron |
TAATAAAAGTAAAGAAATTG+AGG | 0.543310 | 3.1:-13914702 | None:intergenic |
AGCTTTCACATTTGGAAGGG+AGG | 0.543505 | 3.1:+13904545 | MS.gene94366:CDS |
AGAACCTGAAGCATCACTGT+TGG | 0.544033 | 3.1:-13913486 | None:intergenic |
TTTCACATTTGGAAGGGAGG+TGG | 0.544102 | 3.1:+13904548 | MS.gene94366:CDS |
TTGTTGCCGTTTCAAATGGA+TGG | 0.547882 | 3.1:+13904652 | MS.gene94366:CDS |
CAGGGACACCTTCTTTGTCA+AGG | 0.547926 | 3.1:+13906864 | MS.gene94366:CDS |
CGTGTTTCATCTACAACTGA+TGG | 0.551566 | 3.1:+13914645 | MS.gene94366:CDS |
AGCGTATAGTTCTGCTATCA+GGG | 0.554557 | 3.1:+13906846 | MS.gene94366:CDS |
GGCTACAACCTTGACAAAGA+AGG | 0.555146 | 3.1:-13906872 | None:intergenic |
CTGATCCTGCAATAAGTGGA+TGG | 0.555571 | 3.1:-13910297 | None:intergenic |
TTAAAGTTTGCACTTAGAAG+AGG | 0.558675 | 3.1:+13904676 | MS.gene94366:CDS |
TTTACTCAAACAAGCGCGGG+TGG | 0.559462 | 3.1:+13904415 | MS.gene94366:CDS |
AAGTTTGCACTTAGAAGAGG+TGG | 0.560449 | 3.1:+13904679 | MS.gene94366:CDS |
ACTGCGGATTGTCTATCTCT+GGG | 0.565165 | 3.1:-13912009 | None:intergenic |
TTTACAGGCCAGGTTTGTTG+GGG | 0.568030 | 3.1:+13907224 | MS.gene94366:intron |
AACAAGATGCCCTAGAATTG+TGG | 0.574883 | 3.1:+13906071 | MS.gene94366:CDS |
AGAAGCTTTCACATTTGGAA+GGG | 0.575630 | 3.1:+13904542 | MS.gene94366:CDS |
AGCATCACTGTTGGGCTCTG+AGG | 0.575672 | 3.1:-13913477 | None:intergenic |
TTACCGAGGTGAATATCGGC+AGG | 0.578025 | 3.1:-13905175 | None:intergenic |
AAGAAATGACCACAATTCTA+GGG | 0.578562 | 3.1:-13906080 | None:intergenic |
CTTGTAGATAAGGCGGCTCA+AGG | 0.580311 | 3.1:+13908408 | MS.gene94366:intron |
AACCTCATTTCGATCATCGC+CGG | 0.580826 | 3.1:+13912032 | MS.gene94366:CDS |
ATCTGATGAAATATGTCGAA+CGG | 0.582749 | 3.1:-13907103 | None:intergenic |
GATGAGGTTGATGGTTTGAT+CGG | 0.583163 | 3.1:+13904601 | MS.gene94366:CDS |
CTTGTTTGAGTAAAATGTGA+TGG | 0.583477 | 3.1:-13904406 | None:intergenic |
TTGCTGATGAAATGGGACTT+GGG | 0.584496 | 3.1:+13904713 | MS.gene94366:CDS |
TTAACAACTTCAAAACGCTA+CGG | 0.595755 | 3.1:-13904468 | None:intergenic |
CTGAGGACAGAGCTCATCGA+CGG | 0.596186 | 3.1:+13914440 | MS.gene94366:CDS |
CATATACATATTCTGTGCAA+AGG | 0.598271 | 3.1:+13914483 | MS.gene94366:CDS |
GATAAAGGCTGTTCTTGATG+TGG | 0.600626 | 3.1:+13906811 | MS.gene94366:intron |
ACAAAGAAAACCTCAGAACC+AGG | 0.605807 | 3.1:+13906189 | MS.gene94366:CDS |
ATATCGGCAGGCAAGCAGAA+AGG | 0.608188 | 3.1:-13905163 | None:intergenic |
CTCCGGCGATGATCGAAATG+AGG | 0.609409 | 3.1:-13912034 | None:intergenic |
GACAGTTTGGATGAACATGA+TGG | 0.611362 | 3.1:+13908574 | MS.gene94366:CDS |
GACAGTTTGGATGAACATGA+TGG | 0.611362 | 3.1:+13908738 | MS.gene94366:CDS |
TGTGATCTCAAATATATCAA+GGG | 0.612762 | 3.1:+13907277 | MS.gene94366:CDS |
CTTCCTTAGACGATGAAGCA+TGG | 0.613591 | 3.1:-13906106 | None:intergenic |
TTACTCAAACAAGCGCGGGT+GGG | 0.622249 | 3.1:+13904416 | MS.gene94366:CDS |
GTCTGCCAATTTAAACACAC+AGG | 0.622878 | 3.1:-13904443 | None:intergenic |
AAGGGAGGTGGACTCTGGTG+AGG | 0.623482 | 3.1:+13904560 | MS.gene94366:CDS |
ACAACATTGAAAGTGCTCCA+AGG | 0.624995 | 3.1:-13904517 | None:intergenic |
ATTATGTCTTGTAGATAAGG+CGG | 0.626099 | 3.1:+13908401 | MS.gene94366:intron |
GAGCATGCTTGAGCGTAAGT+GGG | 0.638392 | 3.1:+13906128 | MS.gene94366:CDS |
GAAAACCTCAGAACCAGGAG+AGG | 0.640173 | 3.1:+13906194 | MS.gene94366:CDS |
TGATGCGGTGAAAGGGCTAG+AGG | 0.644608 | 3.1:+13914674 | MS.gene94366:CDS |
AGGACAGAGCTCATCGACGG+GGG | 0.648584 | 3.1:+13914443 | MS.gene94366:CDS |
CTCATTTCGATCATCGCCGG+AGG | 0.648872 | 3.1:+13912035 | MS.gene94366:CDS |
AACAGTTACCTCCAAAACGC+CGG | 0.652750 | 3.1:+13908443 | MS.gene94366:CDS |
TGTTCATCCAAACTGTCCAA+AGG | 0.654789 | 3.1:-13908568 | None:intergenic |
TGTTCATCCAAACTGTCCAA+AGG | 0.654789 | 3.1:-13908732 | None:intergenic |
ATACTTGGGATGAATCACAT+TGG | 0.659346 | 3.1:+13914598 | MS.gene94366:CDS |
GAGGACAGAGCTCATCGACG+GGG | 0.660829 | 3.1:+13914442 | MS.gene94366:CDS |
AGAACACTTGAACGATGATG+AGG | 0.663272 | 3.1:+13904585 | MS.gene94366:CDS |
TTGCCTGCCGATATTCACCT+CGG | 0.667730 | 3.1:+13905172 | MS.gene94366:CDS |
ATGAATACCGCAAAACAGCA+GGG | 0.670904 | 3.1:-13905114 | None:intergenic |
CATGGGCTGAAGAAATTGAG+CGG | 0.684516 | 3.1:+13905134 | MS.gene94366:CDS |
GACAGTTTGGATGAACATGA+TGG | 0.685395 | 3.1:+13908902 | MS.gene94366:CDS |
ATGTTGCTTCCAGATGAATG+TGG | 0.696547 | 3.1:+13904381 | MS.gene94366:intron |
TGTTCATCCAAACTGTCCAG+AGG | 0.703707 | 3.1:-13908896 | None:intergenic |
GGGCTGAAGAAATTGAGCGG+TGG | 0.705602 | 3.1:+13905137 | MS.gene94366:CDS |
TGATCGAAATGAGGTTACTG+CGG | 0.719986 | 3.1:-13912025 | None:intergenic |
AACTGATGGCAAATATGATG+CGG | 0.724006 | 3.1:+13914659 | MS.gene94366:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 13904295 | 13914770 | 13904295 | ID=MS.gene94366 |
chr3.1 | mRNA | 13904295 | 13914770 | 13904295 | ID=MS.gene94366.t1;Parent=MS.gene94366 |
chr3.1 | exon | 13904295 | 13904297 | 13904295 | ID=MS.gene94366.t1.exon1;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13904295 | 13904297 | 13904295 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13904394 | 13904747 | 13904394 | ID=MS.gene94366.t1.exon2;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13904394 | 13904747 | 13904394 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13905061 | 13905193 | 13905061 | ID=MS.gene94366.t1.exon3;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13905061 | 13905193 | 13905061 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13906040 | 13906215 | 13906040 | ID=MS.gene94366.t1.exon4;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13906040 | 13906215 | 13906040 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13906812 | 13906885 | 13906812 | ID=MS.gene94366.t1.exon5;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13906812 | 13906885 | 13906812 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13907102 | 13907137 | 13907102 | ID=MS.gene94366.t1.exon6;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13907102 | 13907137 | 13907102 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13907231 | 13907321 | 13907231 | ID=MS.gene94366.t1.exon7;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13907231 | 13907321 | 13907231 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13907870 | 13907929 | 13907870 | ID=MS.gene94366.t1.exon8;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13907870 | 13907929 | 13907870 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13908415 | 13908595 | 13908415 | ID=MS.gene94366.t1.exon9;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13908415 | 13908595 | 13908415 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13908685 | 13908759 | 13908685 | ID=MS.gene94366.t1.exon10;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13908685 | 13908759 | 13908685 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13908849 | 13908923 | 13908849 | ID=MS.gene94366.t1.exon11;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13908849 | 13908923 | 13908849 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13910233 | 13910378 | 13910233 | ID=MS.gene94366.t1.exon12;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13910233 | 13910378 | 13910233 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13911955 | 13912056 | 13911955 | ID=MS.gene94366.t1.exon13;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13911955 | 13912056 | 13911955 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13913393 | 13913503 | 13913393 | ID=MS.gene94366.t1.exon14;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13913393 | 13913503 | 13913393 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13914439 | 13914504 | 13914439 | ID=MS.gene94366.t1.exon15;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13914439 | 13914504 | 13914439 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
chr3.1 | exon | 13914597 | 13914770 | 13914597 | ID=MS.gene94366.t1.exon16;Parent=MS.gene94366.t1 |
chr3.1 | CDS | 13914597 | 13914770 | 13914597 | ID=cds.MS.gene94366.t1;Parent=MS.gene94366.t1 |
Gene Sequence |
Protein sequence |