AlfalfaGEDB | MS.gene94417

M. sativa cultivar XinJiangDaYe / MS.gene94417

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0008144 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94417.t1	RHN43971.1	73.7	76	11	2	38	113	28	94	4.20E-20	107.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94417.t1	A0A072TVK0	73.7	76	11	2	38	113	28	94	3.1e-20	107.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene94417.t1	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94417.t1	MTR_7g405850	80.263	76	6	2	38	113	28	94	2.16e-34	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 25 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGTTGCTGATGATGA+TGG	0.578443	7.1:+86601571	MS.gene94417:CDS
AAATACCTTCGATTGATAGA+AGG	0.404032	7.1:-86601643	None:intergenic
AGTGAAATATCATGATTTAA+AGG	0.299376	7.1:+86602235	MS.gene94417:CDS
ATGGTTGTTGATCTTGAACG+TGG	0.764959	7.1:+86601547	MS.gene94417:CDS
CAACAACTCAGGAGAATTAA+TGG	0.337925	7.1:+86602131	MS.gene94417:intron
CAATGGTCCATCATCAACTT+GGG	0.577723	7.1:-86602173	None:intergenic
CCAAGTTGATGATGGACCAT+TGG	0.554041	7.1:+86602174	MS.gene94417:CDS
CCAATGGTCCATCATCAACT+TGG	0.427516	7.1:-86602174	None:intergenic
GAAGGATTCCTTTCCATCCT+AGG	0.377685	7.1:-86601625	None:intergenic
GCTGATGATGATGGTGGGAG+TGG	0.551251	7.1:+86601580	MS.gene94417:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACCTTCGATTGATAGA+AGG	-	chr7.1:86601646-86601665	None:intergenic	30.0%
ACTGCCTATTGAACAAATAA+TGG	-	chr7.1:86601891-86601910	None:intergenic	30.0%
AGATTAATGCAACCATTCAA+TGG	-	chr7.1:86601854-86601873	None:intergenic	30.0%
CTGCCTATTGAACAAATAAT+GGG	-	chr7.1:86601890-86601909	None:intergenic	30.0%
TTGCCCATTATTTGTTCAAT+AGG	+	chr7.1:86601884-86601903	MS.gene94417:intron	30.0%
ATGAATGGAGTCTTAGCATA+CGG	+	chr7.1:86601977-86601996	MS.gene94417:intron	35.0%
ATGATACGCTAAGCCTTAAT+TGG	+	chr7.1:86601930-86601949	MS.gene94417:intron	35.0%
CAACAACTCAGGAGAATTAA+TGG	+	chr7.1:86602131-86602150	MS.gene94417:intron	35.0%
TATCATACTTGCAACAACTC+AGG	+	chr7.1:86602120-86602139	MS.gene94417:intron	35.0%
TGTTGCAAACGATGTTGAAA+AGG	+	chr7.1:86602319-86602338	MS.gene94417:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	86601547	86602370	86601547	ID=MS.gene94417
chr7.1	mRNA	86601547	86602370	86601547	ID=MS.gene94417.t1;Parent=MS.gene94417
chr7.1	exon	86601547	86601659	86601547	ID=MS.gene94417.t1.exon1;Parent=MS.gene94417.t1
chr7.1	CDS	86601547	86601659	86601547	ID=cds.MS.gene94417.t1;Parent=MS.gene94417.t1
chr7.1	exon	86602142	86602370	86602142	ID=MS.gene94417.t1.exon2;Parent=MS.gene94417.t1
chr7.1	CDS	86602142	86602370	86602142	ID=cds.MS.gene94417.t1;Parent=MS.gene94417.t1

Gene Sequence

>MS.gene94417

ATGGTTGTTGATCTTGAACGTGGTAAAGTTGTTGCTGATGATGATGGTGGGAGTGGACACATTGCTATTGTCGTTGCTCCTAGGATGGAAAGGAATCCTTCTATCAATCGAAGGTATTTTACCTAGGACGCAAATCGTGATTGAAATGAGTTTGTTCTATTAATTTGTTTTTGTTTTAAGTTGATTTAAGTTTTCTTTTATTTCAGGAATGATTTAGCTTATTAAGATTATGATAACTATTTAAGTGAATGTTGTTGATGAGTTAAGTTTTTTTAATTTTGTTCAGGAGTTAAGTTTCTTTAATCCATTGAATGGTTGCATTAATCTGATACTCTAATTGCCCATTATTTGTTCAATAGGCAGTAACGTGGCGCTGGGATATCATGATACGCTAAGCCTTAATTGGCTGATTGATATTTTCGATCGATCTATGAATGGAGTCTTAGCATACGGGAAGGTATTAACTATTGTTATGGGTTTATAGTTTAAATGACTAAATATTTACACTACTTTTAGTTAATTTAAATGTTATTTTGCATATTGAAGAAAACATTGATAAAATTATATATCTTCTATCATACTTGCAACAACTCAGGAGAATTAATGGTCCTCATTTGATTCTCACGCCCAAGTTGATGATGGACCATTGGATTGATAAGATTAATAGAATTGTTCCAGAGCTAAATACAGTGAAATATCATGATTTAAAGGAAGCTGATTTGAAGGAAGCTAGCTTATCACATTTACATATATGTATAGCTAGTTTCGAAGATGTTGCAAACGATGTTGAAAAGGAATTTAAACTCTCCAAAATTAAATGGTGA

Protein sequence

>MS.gene94417.t1

MVVDLERGKVVADDDGGSGHIAIVVAPRMERNPSINRRRINGPHLILTPKLMMDHWIDKINRIVPELNTVKYHDLKEADLKEASLSHLHICIASFEDVANDVEKEFKLSKIKW