AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94437

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94437.t1 MTR_7g026400 89.256 484 52 0 1 484 69 552 0.0 833
MS.gene94437.t1 MTR_0450s0040 49.158 297 109 6 1 296 86 341 2.84e-74 238
MS.gene94437.t1 MTR_2g034960 40.764 157 81 4 1 145 111 267 8.84e-27 114
MS.gene94437.t1 MTR_4g121020 36.310 168 75 3 1 145 9 167 3.23e-26 112
MS.gene94437.t1 MTR_4g121020 36.310 168 75 3 1 145 113 271 6.08e-26 112
MS.gene94437.t1 MTR_4g121020 36.310 168 75 3 1 145 113 271 6.44e-26 112
MS.gene94437.t1 MTR_6g088950 62.222 90 32 2 1 88 86 175 1.69e-25 104
MS.gene94437.t1 MTR_1g032570 35.233 193 96 6 1 167 24 213 1.89e-25 110
MS.gene94437.t1 MTR_4g021760 30.242 248 131 6 1 233 92 312 3.54e-25 105
MS.gene94437.t1 MTR_1g032570 35.233 193 96 6 1 167 93 282 5.20e-25 108
MS.gene94437.t1 MTR_8g079940 35.912 181 98 5 1 163 107 287 5.76e-25 108
MS.gene94437.t1 MTR_1g013170 35.503 169 79 3 2 147 88 249 1.32e-24 107
MS.gene94437.t1 MTR_3g086100 33.493 209 111 6 1 184 24 229 1.55e-24 106
MS.gene94437.t1 MTR_3g086100 34.848 198 101 6 1 173 95 289 5.14e-24 105
MS.gene94437.t1 MTR_3g106220 37.143 175 81 5 9 156 98 270 6.06e-24 105
MS.gene94437.t1 MTR_4g021855 38.255 149 73 2 1 145 91 224 6.42e-24 102
MS.gene94437.t1 MTR_4g021790 37.584 149 74 2 1 145 91 224 2.19e-23 100
MS.gene94437.t1 MTR_7g117705 33.742 163 89 3 2 147 89 249 2.24e-23 102
MS.gene94437.t1 MTR_4g021845 36.620 142 71 2 1 138 91 217 3.72e-23 97.8
MS.gene94437.t1 MTR_2g450070 34.270 178 86 4 8 156 107 282 3.89e-23 103
MS.gene94437.t1 MTR_2g450070 34.270 178 86 4 8 156 107 282 5.83e-23 102
MS.gene94437.t1 MTR_4g131600 34.634 205 108 4 10 189 111 314 6.22e-22 99.4
MS.gene94437.t1 MTR_4g131580 36.306 157 87 2 10 153 108 264 3.83e-21 97.1
MS.gene94437.t1 MTR_3g102590 34.266 143 58 2 1 143 91 197 7.40e-21 92.0
MS.gene94437.t1 MTR_1g013180 35.329 167 78 3 2 145 239 398 2.27e-20 94.7
MS.gene94437.t1 MTR_3g102600 31.126 151 58 2 1 151 41 145 2.61e-20 88.6
MS.gene94437.t1 MTR_3g102600 31.126 151 58 2 1 151 90 194 6.77e-20 89.0
MS.gene94437.t1 MTR_4g131570 33.951 162 91 3 10 155 108 269 1.74e-19 92.0
MS.gene94437.t1 MTR_6g089050 61.905 63 24 0 1 63 32 94 1.76e-19 85.5
MS.gene94437.t1 MTR_4g064730 42.857 112 48 4 66 167 101 206 9.30e-19 87.4
MS.gene94437.t1 MTR_6g045327 35.526 152 84 4 1 151 96 234 2.57e-18 87.0
MS.gene94437.t1 MTR_7g089010 49.296 71 36 0 78 148 80 150 3.41e-18 85.5
MS.gene94437.t1 MTR_3g102590 33.333 138 56 2 1 138 91 192 4.44e-18 82.8
MS.gene94437.t1 MTR_0054s0010 57.143 63 27 0 1 63 21 83 7.32e-17 78.6
MS.gene94437.t1 MTR_3g102600 29.286 140 53 2 1 140 41 134 2.91e-16 75.9
MS.gene94437.t1 MTR_3g102600 29.286 140 53 2 1 140 90 183 4.19e-15 73.9
MS.gene94437.t1 MTR_2g090675 44.444 90 49 1 52 141 125 213 5.96e-15 77.0
MS.gene94437.t1 MTR_4g078810 61.111 54 21 0 88 141 157 210 6.64e-15 77.0
MS.gene94437.t1 MTR_8g105600 31.288 163 82 3 1 144 91 242 4.93e-14 74.7
MS.gene94437.t1 MTR_5g014040 53.333 60 28 0 88 147 310 369 5.61e-14 74.7
MS.gene94437.t1 MTR_4g098870 50.794 63 31 0 88 150 309 371 6.32e-14 74.3
MS.gene94437.t1 MTR_4g098870 50.794 63 31 0 88 150 329 391 6.96e-14 74.3
MS.gene94437.t1 MTR_4g098870 50.794 63 31 0 88 150 309 371 7.16e-14 74.3
MS.gene94437.t1 MTR_4g098870 50.794 63 31 0 88 150 329 391 7.46e-14 74.3
MS.gene94437.t1 MTR_4g098870 50.794 63 31 0 88 150 348 410 7.69e-14 74.3
MS.gene94437.t1 MTR_5g014040 49.231 65 28 1 88 147 270 334 4.72e-12 68.6
MS.gene94437.t1 MTR_5g014040 49.231 65 28 1 88 147 310 374 5.35e-12 68.6
MS.gene94437.t1 MTR_5g041350 54.545 55 24 1 89 142 15 69 1.20e-11 66.6
MS.gene94437.t1 MTR_6g032990 54.545 55 24 1 89 142 42 96 1.42e-11 66.6
MS.gene94437.t1 MTR_4g086835 44.444 63 35 0 85 147 270 332 5.73e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94437.t1 AT3G16857 35.784 204 89 5 1 168 45 242 4.82e-29 121
MS.gene94437.t1 AT3G16857 35.784 204 89 5 1 168 115 312 1.03e-28 120
MS.gene94437.t1 AT3G16857 35.784 204 89 5 1 168 115 312 1.15e-28 120
MS.gene94437.t1 AT5G07210 37.949 195 80 5 12 165 104 298 3.47e-26 112
MS.gene94437.t1 AT5G07210 37.949 195 80 5 12 165 112 306 3.69e-26 112
MS.gene94437.t1 AT2G01760 37.725 167 82 3 1 145 25 191 6.59e-24 102
MS.gene94437.t1 AT2G25180 37.736 159 87 2 1 147 95 253 2.96e-23 103
MS.gene94437.t1 AT2G01760 37.725 167 82 3 1 145 90 256 3.26e-23 101
MS.gene94437.t1 AT2G01760 38.323 167 81 4 1 145 118 284 7.49e-23 100
MS.gene94437.t1 AT4G31920 34.211 152 100 0 1 152 95 246 9.17e-23 102
MS.gene94437.t1 AT5G58080 35.443 158 77 3 10 149 104 254 1.90e-22 101
MS.gene94437.t1 AT2G27070 34.928 209 87 6 1 165 98 301 1.07e-21 98.6
MS.gene94437.t1 AT1G67710 36.723 177 91 5 1 156 15 191 1.59e-20 94.4
MS.gene94437.t1 AT1G67710 36.723 177 91 5 1 156 24 200 1.90e-20 94.4
MS.gene94437.t1 AT1G67710 36.723 177 91 5 1 156 89 265 3.57e-20 94.0
MS.gene94437.t1 AT5G59570 38.053 113 59 2 47 148 88 200 1.17e-18 87.0
MS.gene94437.t1 AT5G59570 38.053 113 59 2 47 148 88 200 1.17e-18 87.0
MS.gene94437.t1 AT5G49240 33.121 157 82 3 1 138 120 272 1.59e-18 86.3
MS.gene94437.t1 AT3G10760 47.887 71 37 0 78 148 94 164 1.69e-18 87.0
MS.gene94437.t1 AT5G05090 49.275 69 35 0 77 145 69 137 3.86e-18 84.7
MS.gene94437.t1 AT2G40970 50.725 69 34 0 80 148 96 164 4.65e-18 84.0
MS.gene94437.t1 AT3G46640 49.296 71 34 1 80 148 133 203 4.76e-18 85.5
MS.gene94437.t1 AT3G46640 49.296 71 34 1 80 148 133 203 4.76e-18 85.5
MS.gene94437.t1 AT3G46640 49.296 71 34 1 80 148 133 203 8.45e-18 84.7
MS.gene94437.t1 AT5G44190 62.295 61 21 1 81 141 141 199 1.26e-16 82.0
MS.gene94437.t1 AT5G44190 62.295 61 21 1 81 141 141 199 1.50e-16 81.3
MS.gene94437.t1 AT3G62670 35.526 152 87 5 1 141 117 268 1.77e-15 79.0
MS.gene94437.t1 AT2G20570 59.259 54 22 0 88 141 152 205 2.63e-14 75.1
MS.gene94437.t1 AT2G20570 60.784 51 20 0 91 141 171 221 1.41e-13 73.2
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.36e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.62e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.62e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.62e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.62e-13 72.4
MS.gene94437.t1 AT4G18020 45.333 75 38 1 89 163 296 367 2.62e-13 72.4
MS.gene94437.t1 AT1G49190 30.952 168 91 5 1 146 112 276 6.91e-12 67.8
MS.gene94437.t1 AT3G04450 52.632 57 26 1 86 141 235 291 1.18e-11 66.2
MS.gene94437.t1 AT3G04450 46.479 71 31 2 86 149 235 305 1.73e-11 66.6
MS.gene94437.t1 AT3G04450 46.479 71 31 2 86 149 195 265 1.94e-11 66.2
MS.gene94437.t1 AT3G04450 46.479 71 31 2 86 149 195 265 1.94e-11 66.2
MS.gene94437.t1 AT3G04030 52.727 55 25 1 89 142 45 99 3.22e-11 65.5
MS.gene94437.t1 AT3G04030 52.727 55 25 1 89 142 45 99 3.58e-11 65.5
MS.gene94437.t1 AT5G29000 44.286 70 38 1 86 154 228 297 3.63e-11 64.7
MS.gene94437.t1 AT5G29000 40.506 79 46 1 86 163 185 263 3.95e-11 65.1
MS.gene94437.t1 AT5G29000 40.506 79 46 1 86 163 185 263 3.95e-11 65.1
MS.gene94437.t1 AT5G29000 40.506 79 46 1 86 163 228 306 4.09e-11 65.1

Find 76 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTCTATTTCTGATATT+AGG 0.142363 7.1:+86995795 MS.gene94437:CDS
CTGAAGACTTCAAAGATATT+TGG 0.172247 7.1:+86994362 MS.gene94437:CDS
GTAAGAAACAATAACCATTT+TGG 0.206140 7.1:+86995596 MS.gene94437:CDS
AAATTCTAACTTTGGATCTT+TGG 0.211667 7.1:+86995535 MS.gene94437:CDS
GAACTATGAATAATGGATTA+AGG 0.228641 7.1:+86995657 MS.gene94437:CDS
CAATTCCCTTACATACAAAA+AGG 0.229371 7.1:+86995239 MS.gene94437:CDS
ACTTACTTTCCAATCCAATT+TGG 0.246719 7.1:-86994600 None:intergenic
CTGCTTGCTATTAACCAAAT+TGG 0.262572 7.1:+86994586 MS.gene94437:CDS
GGATTCTATTTCTGATATTA+GGG 0.272190 7.1:+86995796 MS.gene94437:CDS
AACTTGTGAGGCATAATATT+AGG 0.274422 7.1:-86995563 None:intergenic
AAATGTAGCAAGTCACTTAC+AGG 0.277878 7.1:+86994803 MS.gene94437:CDS
TTTGGAATTCAGCTGAATAA+TGG 0.297513 7.1:+86995614 MS.gene94437:CDS
CAACATGATGCGTTGGAAAT+TGG 0.299414 7.1:-86995214 None:intergenic
TATTCAGCTGAATTCCAAAA+TGG 0.301790 7.1:-86995610 None:intergenic
TTAAGAAACAAAAGCTTGTT+TGG 0.309580 7.1:+86994539 MS.gene94437:CDS
GGAATTGGAACTATGAATAA+TGG 0.315352 7.1:+86995650 MS.gene94437:CDS
TTGAAGTCTTCAGCACAAAA+AGG 0.324880 7.1:-86994352 None:intergenic
ATCTCAAAGACACTAGAAAA+TGG 0.331289 7.1:+86994307 MS.gene94437:CDS
TTTACTCAACGTGACTTAGA+TGG 0.347030 7.1:+86995887 MS.gene94437:CDS
TTCAAGATTGGGAACAAGTT+AGG 0.352069 7.1:+86995270 MS.gene94437:CDS
AGATATTTGGAAATATGTTA+TGG 0.355548 7.1:+86994375 MS.gene94437:CDS
GGCTGTTCCAAAGAAAATTC+TGG 0.359742 7.1:+86994749 MS.gene94437:CDS
AACTATGAATAATGGATTAA+GGG 0.363152 7.1:+86995658 MS.gene94437:CDS
AAGGGTTGGCTCTTCAAGAT+TGG 0.372343 7.1:+86995258 MS.gene94437:CDS
ACTTGTGAGGCATAATATTA+GGG 0.374491 7.1:-86995562 None:intergenic
GGAGCAGAAATGGTTGGAAT+TGG 0.379114 7.1:+86995635 MS.gene94437:CDS
TGCTATTAACCAAATTGGAT+TGG 0.390260 7.1:+86994591 MS.gene94437:CDS
GGCCATGGTCAAAACAGGTT+TGG 0.410656 7.1:+86995338 MS.gene94437:CDS
TAGAGGAGAACAAGGATTGA+TGG 0.421210 7.1:+86995439 MS.gene94437:CDS
CTACTTTCACTAATGAGGTT+GGG 0.423849 7.1:+86995945 MS.gene94437:CDS
GCTGAATAATGGAGCAGAAA+TGG 0.428747 7.1:+86995625 MS.gene94437:CDS
CTGCGAGATGTTGAAGAGAA+AGG 0.429447 7.1:+86995011 MS.gene94437:CDS
CAGTGATGTCTGAAGACAAT+AGG 0.437039 7.1:+86994275 None:intergenic
AGGGTTGGCTCTTCAAGATT+GGG 0.442206 7.1:+86995259 MS.gene94437:CDS
GCGTTGGAAATTGGTTGAAA+TGG 0.443167 7.1:-86995205 None:intergenic
ATAATGGCCATGGTCAAAAC+AGG 0.444362 7.1:+86995333 MS.gene94437:CDS
CTTCTTCAAGTTTGTTAACA+AGG 0.448083 7.1:+86995468 MS.gene94437:CDS
GCTACTTTCACTAATGAGGT+TGG 0.473474 7.1:+86995944 MS.gene94437:CDS
GGTTCAAGGAGGGTTTGCTC+TGG 0.484414 7.1:+86995775 MS.gene94437:CDS
GCAGGATCAGTTAATAATGA+AGG 0.491730 7.1:+86995842 MS.gene94437:CDS
AGTGTCTTTGAGATTAAACT+TGG 0.491853 7.1:-86994298 None:intergenic
GTTGAAGAGAAAGGAATGGT+TGG 0.491902 7.1:+86995020 MS.gene94437:CDS
TCTGATATTAGGGGAGGGAG+TGG 0.493957 7.1:+86995806 MS.gene94437:CDS
CTTGAATATCTCTCTCTCCT+TGG 0.495918 7.1:-86994513 None:intergenic
GATTGGGAACAAGTTAGGCT+TGG 0.497594 7.1:+86995275 MS.gene94437:CDS
TAGTGCTACTTTCACTAATG+AGG 0.497764 7.1:+86995940 MS.gene94437:CDS
TAGGCTTGGAAAATCAAAGT+TGG 0.508790 7.1:+86995289 MS.gene94437:CDS
ATTTCTCTGATCACAGAACT+TGG 0.510262 7.1:-86995089 None:intergenic
GATGTTGTTGCGGAGAATAA+TGG 0.517615 7.1:+86995317 MS.gene94437:CDS
TTCTTCAAGTTTGTTAACAA+GGG 0.536372 7.1:+86995469 MS.gene94437:CDS
ACTTCAATATTTGCAAACAC+TGG 0.542849 7.1:+86995148 MS.gene94437:CDS
AGTGGAAGAAAGTTTCTAGC+AGG 0.545083 7.1:+86995824 MS.gene94437:CDS
AGCTAGTGGAAGCACCATCA+TGG 0.545478 7.1:-86995406 None:intergenic
GACTTAGATGGAAATGTTGT+GGG 0.546520 7.1:+86995899 MS.gene94437:CDS
AATAATGGAGCAGAAATGGT+TGG 0.555811 7.1:+86995629 MS.gene94437:CDS
CTATTTCTGATATTAGGGGA+GGG 0.562145 7.1:+86995801 MS.gene94437:CDS
TCTATATGATGAAAAGCTAG+TGG 0.562508 7.1:-86995420 None:intergenic
AATTTGGTTTGGTTCAAGGA+GGG 0.563542 7.1:+86995765 MS.gene94437:CDS
GAAGAGAAAGGAATGGTTGG+AGG 0.566539 7.1:+86995023 MS.gene94437:CDS
GTTTGCAAATATTGAAGTGT+TGG 0.578096 7.1:-86995143 None:intergenic
AATTGGCCAACATGATGCGT+TGG 0.583725 7.1:-86995221 None:intergenic
TCTATTTCTGATATTAGGGG+AGG 0.587568 7.1:+86995800 MS.gene94437:CDS
AAATTTGGTTTGGTTCAAGG+AGG 0.591953 7.1:+86995764 MS.gene94437:CDS
TCATCATATAGAGGAGAACA+AGG 0.594028 7.1:+86995431 MS.gene94437:CDS
GACATTAGAAACCAGACTCA+TGG 0.599860 7.1:+86995506 MS.gene94437:CDS
GATTCTATTTCTGATATTAG+GGG 0.603781 7.1:+86995797 MS.gene94437:CDS
AGAAAGAGTAAAGAATGCCA+AGG 0.604346 7.1:+86994496 MS.gene94437:CDS
CAATTTCCAACGCATCATGT+TGG 0.607673 7.1:+86995215 MS.gene94437:CDS
TGACTTAGATGGAAATGTTG+TGG 0.614635 7.1:+86995898 MS.gene94437:CDS
GTTGGAAGCTGATGTTGTTG+CGG 0.645784 7.1:+86995307 MS.gene94437:CDS
AAAGTCTTCATACCTTGTTG+CGG 0.645913 7.1:-86996024 None:intergenic
TGACAAGAATCTCCGCAACA+AGG 0.646714 7.1:+86996012 MS.gene94437:CDS
ACACTGGCATATCAAACAAG+AGG 0.654807 7.1:+86995164 MS.gene94437:CDS
AGATGTTGAAGAGAAAGGAA+TGG 0.660542 7.1:+86995016 MS.gene94437:CDS
ACATCAGAAGTAAACTTGTG+AGG 0.669577 7.1:-86995575 None:intergenic
GTTGCGGAGAATAATGGCCA+TGG 0.690083 7.1:+86995323 MS.gene94437:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATATTTTTCTTATGAA+AGG + chr7.1:86994631-86994650 MS.gene94437:intron 10.0%
!! AGATATTTGGAAATATGTTA+TGG + chr7.1:86994375-86994394 MS.gene94437:CDS 20.0%
!!! AACTATGAATAATGGATTAA+GGG + chr7.1:86995658-86995677 MS.gene94437:CDS 20.0%
!!! CAACAATTTTGATTACTTAA+TGG + chr7.1:86995985-86996004 MS.gene94437:CDS 20.0%
!!! TCTTTTGTGAATGAAAAATT+TGG + chr7.1:86995749-86995768 MS.gene94437:CDS 20.0%
!!! TTAACAAGGGATTTTAAATT+TGG + chr7.1:86995482-86995501 MS.gene94437:CDS 20.0%
! AAATTCTAACTTTGGATCTT+TGG + chr7.1:86995535-86995554 MS.gene94437:CDS 25.0%
! AATTCCCTTACATACAAAAA+GGG + chr7.1:86995240-86995259 MS.gene94437:CDS 25.0%
! GGTGTTAAAAATTCTAACTT+TGG + chr7.1:86995527-86995546 MS.gene94437:CDS 25.0%
! TGTGAATGAAAAATTTGGTT+TGG + chr7.1:86995754-86995773 MS.gene94437:CDS 25.0%
!! GTAAGAAACAATAACCATTT+TGG + chr7.1:86995596-86995615 MS.gene94437:CDS 25.0%
!! TTAAGAAACAAAAGCTTGTT+TGG + chr7.1:86994539-86994558 MS.gene94437:CDS 25.0%
!! TTATATTTTCCCTAATTCAG+AGG + chr7.1:86994728-86994747 MS.gene94437:intron 25.0%
!!! GAACTATGAATAATGGATTA+AGG + chr7.1:86995657-86995676 MS.gene94437:CDS 25.0%
!!! GAGTTTTTTGCTTGAAAAAA+TGG - chr7.1:86995383-86995402 None:intergenic 25.0%
!!! GATTCTATTTCTGATATTAG+GGG + chr7.1:86995797-86995816 MS.gene94437:CDS 25.0%
!!! GGATTCTATTTCTGATATTA+GGG + chr7.1:86995796-86995815 MS.gene94437:CDS 25.0%
!!! TGGATTCTATTTCTGATATT+AGG + chr7.1:86995795-86995814 MS.gene94437:CDS 25.0%
!!! TTCTTCAAGTTTGTTAACAA+GGG + chr7.1:86995469-86995488 MS.gene94437:CDS 25.0%
AACTTGTGAGGCATAATATT+AGG - chr7.1:86995566-86995585 None:intergenic 30.0%
AAGACAACGACAAAAATTAG+TGG - chr7.1:86994915-86994934 None:intergenic 30.0%
ACTTACTTTCCAATCCAATT+TGG - chr7.1:86994603-86994622 None:intergenic 30.0%
ACTTCAATATTTGCAAACAC+TGG + chr7.1:86995148-86995167 MS.gene94437:CDS 30.0%
ACTTGTGAGGCATAATATTA+GGG - chr7.1:86995565-86995584 None:intergenic 30.0%
ATCTCAAAGACACTAGAAAA+TGG + chr7.1:86994307-86994326 MS.gene94437:CDS 30.0%
CAATTCCCTTACATACAAAA+AGG + chr7.1:86995239-86995258 MS.gene94437:CDS 30.0%
CTGAAGACTTCAAAGATATT+TGG + chr7.1:86994362-86994381 MS.gene94437:CDS 30.0%
GGAATTGGAACTATGAATAA+TGG + chr7.1:86995650-86995669 MS.gene94437:CDS 30.0%
GTTTGCAAATATTGAAGTGT+TGG - chr7.1:86995146-86995165 None:intergenic 30.0%
TATTCAGCTGAATTCCAAAA+TGG - chr7.1:86995613-86995632 None:intergenic 30.0%
TCAGAGAAATCGAAGAAAAA+AGG + chr7.1:86995102-86995121 MS.gene94437:CDS 30.0%
TCTATATGATGAAAAGCTAG+TGG - chr7.1:86995423-86995442 None:intergenic 30.0%
TGCTATTAACCAAATTGGAT+TGG + chr7.1:86994591-86994610 MS.gene94437:CDS 30.0%
! AATTTTTAACACCATGAGTC+TGG - chr7.1:86995520-86995539 None:intergenic 30.0%
! AGAAACATTTTGTGCAGATA+AGG - chr7.1:86994568-86994587 None:intergenic 30.0%
! ATAAGATCAAGTTTTGCATC+AGG + chr7.1:86995062-86995081 MS.gene94437:CDS 30.0%
! ATAGTTTTTGCTTCAACGAA+AGG + chr7.1:86995699-86995718 MS.gene94437:CDS 30.0%
! ATGATCTCCAGAATTTTCTT+TGG - chr7.1:86994759-86994778 None:intergenic 30.0%
! CAATGCTTCTTTTTGTTCTT+AGG - chr7.1:86994472-86994491 None:intergenic 30.0%
! CTTTTTGTATGTAAGGGAAT+TGG - chr7.1:86995241-86995260 None:intergenic 30.0%
! TAGTTTTTGCTTCAACGAAA+GGG + chr7.1:86995700-86995719 MS.gene94437:CDS 30.0%
! TTTGGAATTCAGCTGAATAA+TGG + chr7.1:86995614-86995633 MS.gene94437:CDS 30.0%
!! AGTGTCTTTGAGATTAAACT+TGG - chr7.1:86994301-86994320 None:intergenic 30.0%
!! CTTCTTCAAGTTTGTTAACA+AGG + chr7.1:86995468-86995487 MS.gene94437:CDS 30.0%
!! GAAAAATTTGGTTTGGTTCA+AGG + chr7.1:86995761-86995780 MS.gene94437:CDS 30.0%
!!! ACTAGCTTTTCATCATATAG+AGG + chr7.1:86995422-86995441 MS.gene94437:CDS 30.0%
AAATGTAGCAAGTCACTTAC+AGG + chr7.1:86994803-86994822 MS.gene94437:CDS 35.0%
ACATCAGAAGTAAACTTGTG+AGG - chr7.1:86995578-86995597 None:intergenic 35.0%
AGAAAGAGTAAAGAATGCCA+AGG + chr7.1:86994496-86994515 MS.gene94437:CDS 35.0%
AGATGTTGAAGAGAAAGGAA+TGG + chr7.1:86995016-86995035 MS.gene94437:CDS 35.0%
ATTTCTCTGATCACAGAACT+TGG - chr7.1:86995092-86995111 None:intergenic 35.0%
CTACTTTCACTAATGAGGTT+GGG + chr7.1:86995945-86995964 MS.gene94437:CDS 35.0%
GACTTAGATGGAAATGTTGT+GGG + chr7.1:86995899-86995918 MS.gene94437:CDS 35.0%
GCAAAAAACTCATTCCATGA+TGG + chr7.1:86995392-86995411 MS.gene94437:CDS 35.0%
GCAGGATCAGTTAATAATGA+AGG + chr7.1:86995842-86995861 MS.gene94437:CDS 35.0%
TAGGCTTGGAAAATCAAAGT+TGG + chr7.1:86995289-86995308 MS.gene94437:CDS 35.0%
TCATCATATAGAGGAGAACA+AGG + chr7.1:86995431-86995450 MS.gene94437:CDS 35.0%
TGACTTAGATGGAAATGTTG+TGG + chr7.1:86995898-86995917 MS.gene94437:CDS 35.0%
TTCAAGATTGGGAACAAGTT+AGG + chr7.1:86995270-86995289 MS.gene94437:CDS 35.0%
TTGAAGTCTTCAGCACAAAA+AGG - chr7.1:86994355-86994374 None:intergenic 35.0%
TTTACTCAACGTGACTTAGA+TGG + chr7.1:86995887-86995906 MS.gene94437:CDS 35.0%
! AATAATGGAGCAGAAATGGT+TGG + chr7.1:86995629-86995648 MS.gene94437:CDS 35.0%
! AGTTTTTGCTTCAACGAAAG+GGG + chr7.1:86995701-86995720 MS.gene94437:CDS 35.0%
! CCAACCCTTTTTGTATGTAA+GGG - chr7.1:86995247-86995266 None:intergenic 35.0%
!! AAATTTGGTTTGGTTCAAGG+AGG + chr7.1:86995764-86995783 MS.gene94437:CDS 35.0%
!! AATTTGGTTTGGTTCAAGGA+GGG + chr7.1:86995765-86995784 MS.gene94437:CDS 35.0%
!! CTATTTCTGATATTAGGGGA+GGG + chr7.1:86995801-86995820 MS.gene94437:CDS 35.0%
!! CTGCTTGCTATTAACCAAAT+TGG + chr7.1:86994586-86994605 MS.gene94437:CDS 35.0%
!! TAGTGCTACTTTCACTAATG+AGG + chr7.1:86995940-86995959 MS.gene94437:CDS 35.0%
!! TCTATTTCTGATATTAGGGG+AGG + chr7.1:86995800-86995819 MS.gene94437:CDS 35.0%
ACACTGGCATATCAAACAAG+AGG + chr7.1:86995164-86995183 MS.gene94437:CDS 40.0%
ATAATGGCCATGGTCAAAAC+AGG + chr7.1:86995333-86995352 MS.gene94437:CDS 40.0%
CAACATGATGCGTTGGAAAT+TGG - chr7.1:86995217-86995236 None:intergenic 40.0%
CAATTTCCAACGCATCATGT+TGG + chr7.1:86995215-86995234 MS.gene94437:CDS 40.0%
CCCTTACATACAAAAAGGGT+TGG + chr7.1:86995244-86995263 MS.gene94437:CDS 40.0%
CTTGAATATCTCTCTCTCCT+TGG - chr7.1:86994516-86994535 None:intergenic 40.0%
GACATTAGAAACCAGACTCA+TGG + chr7.1:86995506-86995525 MS.gene94437:CDS 40.0%
GATGTTGTTGCGGAGAATAA+TGG + chr7.1:86995317-86995336 MS.gene94437:CDS 40.0%
GCGTTGGAAATTGGTTGAAA+TGG - chr7.1:86995208-86995227 None:intergenic 40.0%
GGCTGTTCCAAAGAAAATTC+TGG + chr7.1:86994749-86994768 MS.gene94437:CDS 40.0%
GTTGAAGAGAAAGGAATGGT+TGG + chr7.1:86995020-86995039 MS.gene94437:CDS 40.0%
TAGAGGAGAACAAGGATTGA+TGG + chr7.1:86995439-86995458 MS.gene94437:CDS 40.0%
TTGGAACAGCCTCTGAATTA+GGG - chr7.1:86994740-86994759 None:intergenic 40.0%
! ACATTTTCTCTGGTCAGGTT+TGG - chr7.1:86994789-86994808 None:intergenic 40.0%
! GCCAACCCTTTTTGTATGTA+AGG - chr7.1:86995248-86995267 None:intergenic 40.0%
! GCTACTTTCACTAATGAGGT+TGG + chr7.1:86995944-86995963 MS.gene94437:CDS 40.0%
! GCTGAATAATGGAGCAGAAA+TGG + chr7.1:86995625-86995644 MS.gene94437:CDS 40.0%
! TTGCTACATTTTCTCTGGTC+AGG - chr7.1:86994794-86994813 None:intergenic 40.0%
! TTTGGAACAGCCTCTGAATT+AGG - chr7.1:86994741-86994760 None:intergenic 40.0%
!! AGTGGAAGAAAGTTTCTAGC+AGG + chr7.1:86995824-86995843 MS.gene94437:CDS 40.0%
!!! GTGACTTGCTACATTTTCTC+TGG - chr7.1:86994799-86994818 None:intergenic 40.0%
!!! TTCCAAACCTGTTTTGACCA+TGG - chr7.1:86995343-86995362 None:intergenic 40.0%
AATTGGCCAACATGATGCGT+TGG - chr7.1:86995224-86995243 None:intergenic 45.0%
CTGCGAGATGTTGAAGAGAA+AGG + chr7.1:86995011-86995030 MS.gene94437:CDS 45.0%
GAAGAGAAAGGAATGGTTGG+AGG + chr7.1:86995023-86995042 MS.gene94437:CDS 45.0%
GATTGGGAACAAGTTAGGCT+TGG + chr7.1:86995275-86995294 MS.gene94437:CDS 45.0%
GGAGCAGAAATGGTTGGAAT+TGG + chr7.1:86995635-86995654 MS.gene94437:CDS 45.0%
GTTGGAAGCTGATGTTGTTG+CGG + chr7.1:86995307-86995326 MS.gene94437:CDS 45.0%
!! AAGGGTTGGCTCTTCAAGAT+TGG + chr7.1:86995258-86995277 MS.gene94437:CDS 45.0%
!! AGGGTTGGCTCTTCAAGATT+GGG + chr7.1:86995259-86995278 MS.gene94437:CDS 45.0%
GGCCATGGTCAAAACAGGTT+TGG + chr7.1:86995338-86995357 MS.gene94437:CDS 50.0%
GTTGCGGAGAATAATGGCCA+TGG + chr7.1:86995323-86995342 MS.gene94437:CDS 50.0%
TCTGATATTAGGGGAGGGAG+TGG + chr7.1:86995806-86995825 MS.gene94437:CDS 50.0%
!! AGCTAGTGGAAGCACCATCA+TGG - chr7.1:86995409-86995428 None:intergenic 50.0%
! GGTTCAAGGAGGGTTTGCTC+TGG + chr7.1:86995775-86995794 MS.gene94437:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 86994280 86996033 86994280 ID=MS.gene94437
chr7.1 mRNA 86994280 86996033 86994280 ID=MS.gene94437.t1;Parent=MS.gene94437
chr7.1 exon 86994280 86994616 86994280 ID=MS.gene94437.t1.exon1;Parent=MS.gene94437.t1
chr7.1 CDS 86994280 86994616 86994280 ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1
chr7.1 exon 86994748 86994824 86994748 ID=MS.gene94437.t1.exon2;Parent=MS.gene94437.t1
chr7.1 CDS 86994748 86994824 86994748 ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1
chr7.1 exon 86994996 86996033 86994996 ID=MS.gene94437.t1.exon3;Parent=MS.gene94437.t1
chr7.1 CDS 86994996 86996033 86994996 ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1
Gene Sequence

>MS.gene94437

ATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACACTAGAAAATGGAGCTGCACAATATATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTTGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACAAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTGCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTTTCTTATGAAAGGCTTTTTAAATCTAATTAGTTTTAACTTATATAAAGTTATATATAATAACTAACTACAATGTGTTTTTCTTGTGTTTATATTTTCCCTAATTCAGAGGCTGTTCCAAAGAAAATTCTGGAGATCATGAATATACCAAACCTGACCAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTTTCTCAATTTACTTCAAATATTTCAATAATATTATAATGTCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGCCACTAATTTTTGTCGTTGTCTTAACTTTCTCTAGTATATCTTGCAAACTCTAATGCTTTAGTATGTGATCACAATACTTGCAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTATAAGATCAAGTTTTGCATCAGGTCTACCAAGTTCTGTGATCAGAGAAATCGAAGAAAAAAGGACAAACAAACTTCATGCGCCAACACTTCAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACGCATCATGTTGGCCAATTCCCTTACATACAAAAAGGGTTGGCTCTTCAAGATTGGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCTGATGTTGTTGCGGAGAATAATGGCCATGGTCAAAACAGGTTTGGAATAAGCTCTTCAAAGCTTCCATTTTTTCAAGCAAAAAACTCATTCCATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGAGAACAAGGATTGATGGTTTCTTCTTCTTCAAGTTTGTTAACAAGGGATTTTAAATTTGGTGACATTAGAAACCAGACTCATGGTGTTAAAAATTCTAACTTTGGATCTTTGGCAAGCCCTAATATTATGCCTCACAAGTTTACTTCTGATGTAAGAAACAATAACCATTTTGGAATTCAGCTGAATAATGGAGCAGAAATGGTTGGAATTGGAACTATGAATAATGGATTAAGGGATTCTAGTGCAAATAACAATAGTTTTTGCTTCAACGAAAGGGGTCAAAATGAAAATATAAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGCTCTGGATTCTATTTCTGATATTAGGGGAGGGAGTGGAAGAAAGTTTCTAGCAGGATCAGTTAATAATGAAGGAAATGTTTCAAAGAATAGACAATTTACTCAACGTGACTTAGATGGAAATGTTGTGGGAAATGAGCAAAAGTATAATAGTGCTACTTTCACTAATGAGGTTGGGTTCAACAAAATTGAATTCAACAATTTTGATTACTTAATGGATGATGACAAGAATCTCCGCAACAAG
Protein sequence

>MS.gene94437.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIWKYVMEAKKEKLFIESLFVRSEEEEISSEPKNKKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKAVPKKILEIMNIPNLTRENVASHLQKYRIFLRDVEEKGMVGGISHRAIRSSFASGLPSSVIREIEEKRTNKLHAPTLQYLQTLAYQTRGANNVFNHFNQFPTHHVGQFPYIQKGLALQDWEQVRLGKSKLEADVVAENNGHGQNRFGISSSKLPFFQAKNSFHDGASTSFSSYRGEQGLMVSSSSSLLTRDFKFGDIRNQTHGVKNSNFGSLASPNIMPHKFTSDVRNNNHFGIQLNNGAEMVGIGTMNNGLRDSSANNNSFCFNERGQNENINFRSFVNEKFGLVQGGFALDSISDIRGGSGRKFLAGSVNNEGNVSKNRQFTQRDLDGNVVGNEQKYNSATFTNEVGFNKIEFNNFDYLMDDDKNLRNK