AlfalfaGEDB | MS.gene94437

M. sativa cultivar XinJiangDaYe / MS.gene94437

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94437.t1	AES78253.1	87	484	63	0	1	484	69	552	1.50E-231	812

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94437.t1	Q5N6V8	36.0	172	82	2	1	150	88	253	1.7e-21	105.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94437.t1	G7L033	87.0	484	63	0	1	484	69	552	1.1e-231	812.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene94437.t1	TF	GARP-G2-like

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94437.t1	MTR_7g026400	89.256	484	52	0	1	484	69	552	0.0	833
MS.gene94437.t1	MTR_0450s0040	49.158	297	109	6	1	296	86	341	2.84e-74	238
MS.gene94437.t1	MTR_2g034960	40.764	157	81	4	1	145	111	267	8.84e-27	114
MS.gene94437.t1	MTR_4g121020	36.310	168	75	3	1	145	9	167	3.23e-26	112
MS.gene94437.t1	MTR_4g121020	36.310	168	75	3	1	145	113	271	6.08e-26	112
MS.gene94437.t1	MTR_4g121020	36.310	168	75	3	1	145	113	271	6.44e-26	112
MS.gene94437.t1	MTR_6g088950	62.222	90	32	2	1	88	86	175	1.69e-25	104
MS.gene94437.t1	MTR_1g032570	35.233	193	96	6	1	167	24	213	1.89e-25	110
MS.gene94437.t1	MTR_4g021760	30.242	248	131	6	1	233	92	312	3.54e-25	105
MS.gene94437.t1	MTR_1g032570	35.233	193	96	6	1	167	93	282	5.20e-25	108

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94437.t1	AT3G16857	35.784	204	89	5	1	168	45	242	4.82e-29	121
MS.gene94437.t1	AT3G16857	35.784	204	89	5	1	168	115	312	1.03e-28	120
MS.gene94437.t1	AT3G16857	35.784	204	89	5	1	168	115	312	1.15e-28	120
MS.gene94437.t1	AT5G07210	37.949	195	80	5	12	165	104	298	3.47e-26	112
MS.gene94437.t1	AT5G07210	37.949	195	80	5	12	165	112	306	3.69e-26	112
MS.gene94437.t1	AT2G01760	37.725	167	82	3	1	145	25	191	6.59e-24	102
MS.gene94437.t1	AT2G25180	37.736	159	87	2	1	147	95	253	2.96e-23	103
MS.gene94437.t1	AT2G01760	37.725	167	82	3	1	145	90	256	3.26e-23	101
MS.gene94437.t1	AT2G01760	38.323	167	81	4	1	145	118	284	7.49e-23	100
MS.gene94437.t1	AT4G31920	34.211	152	100	0	1	152	95	246	9.17e-23	102

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Find 76 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTCTTCATACCTTGTTG+CGG	0.645913	7.1:-86996024	None:intergenic
AAATGTAGCAAGTCACTTAC+AGG	0.277878	7.1:+86994803	MS.gene94437:CDS
AAATTCTAACTTTGGATCTT+TGG	0.211667	7.1:+86995535	MS.gene94437:CDS
AAATTTGGTTTGGTTCAAGG+AGG	0.591953	7.1:+86995764	MS.gene94437:CDS
AACTATGAATAATGGATTAA+GGG	0.363152	7.1:+86995658	MS.gene94437:CDS
AACTTGTGAGGCATAATATT+AGG	0.274422	7.1:-86995563	None:intergenic
AAGGGTTGGCTCTTCAAGAT+TGG	0.372343	7.1:+86995258	MS.gene94437:CDS
AATAATGGAGCAGAAATGGT+TGG	0.555811	7.1:+86995629	MS.gene94437:CDS
AATTGGCCAACATGATGCGT+TGG	0.583725	7.1:-86995221	None:intergenic
AATTTGGTTTGGTTCAAGGA+GGG	0.563542	7.1:+86995765	MS.gene94437:CDS

Showing 1 to 10 of 76 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGTGAGGCATAATATT+AGG	-	chr7.1:86995566-86995585	None:intergenic	30.0%
AAGACAACGACAAAAATTAG+TGG	-	chr7.1:86994915-86994934	None:intergenic	30.0%
ACTTACTTTCCAATCCAATT+TGG	-	chr7.1:86994603-86994622	None:intergenic	30.0%
ACTTCAATATTTGCAAACAC+TGG	+	chr7.1:86995148-86995167	MS.gene94437:CDS	30.0%
ACTTGTGAGGCATAATATTA+GGG	-	chr7.1:86995565-86995584	None:intergenic	30.0%
ATCTCAAAGACACTAGAAAA+TGG	+	chr7.1:86994307-86994326	MS.gene94437:CDS	30.0%
CAATTCCCTTACATACAAAA+AGG	+	chr7.1:86995239-86995258	MS.gene94437:CDS	30.0%
CTGAAGACTTCAAAGATATT+TGG	+	chr7.1:86994362-86994381	MS.gene94437:CDS	30.0%
GGAATTGGAACTATGAATAA+TGG	+	chr7.1:86995650-86995669	MS.gene94437:CDS	30.0%
GTTTGCAAATATTGAAGTGT+TGG	-	chr7.1:86995146-86995165	None:intergenic	30.0%

Showing 1 to 10 of 105 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	86994280	86996033	86994280	ID=MS.gene94437
chr7.1	mRNA	86994280	86996033	86994280	ID=MS.gene94437.t1;Parent=MS.gene94437
chr7.1	exon	86994280	86994616	86994280	ID=MS.gene94437.t1.exon1;Parent=MS.gene94437.t1
chr7.1	CDS	86994280	86994616	86994280	ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1
chr7.1	exon	86994748	86994824	86994748	ID=MS.gene94437.t1.exon2;Parent=MS.gene94437.t1
chr7.1	CDS	86994748	86994824	86994748	ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1
chr7.1	exon	86994996	86996033	86994996	ID=MS.gene94437.t1.exon3;Parent=MS.gene94437.t1
chr7.1	CDS	86994996	86996033	86994996	ID=cds.MS.gene94437.t1;Parent=MS.gene94437.t1

Gene Sequence

>MS.gene94437

ATGTCTGAAGACAATAGGCCAAGTTTAATCTCAAAGACACTAGAAAATGGAGCTGCACAATATATTGTGAAACCTTTTTGTGCTGAAGACTTCAAAGATATTTGGAAATATGTTATGGAAGCAAAGAAAGAGAAACTTTTCATTGAAAGTTTATTTGTGAGAAGCGAAGAAGAAGAGATATCAAGTGAACCTAAGAACAAAAAGAAGCATTGCAAGAGAAAGAGTAAAGAATGCCAAGGAGAGAGAGATATTCAAGTTGTTAAGAAACAAAAGCTTGTTTGGACACCTTATCTGCACAAAATGTTTCTGCTTGCTATTAACCAAATTGGATTGGAAAGTAAGTCATCTTTTAAAAATATTTTTCTTATGAAAGGCTTTTTAAATCTAATTAGTTTTAACTTATATAAAGTTATATATAATAACTAACTACAATGTGTTTTTCTTGTGTTTATATTTTCCCTAATTCAGAGGCTGTTCCAAAGAAAATTCTGGAGATCATGAATATACCAAACCTGACCAGAGAAAATGTAGCAAGTCACTTACAGGTTTTTTTCTCAATTTACTTCAAATATTTCAATAATATTATAATGTCATCATTAGAAGACTGAATGATAATGTTGATAATTTTTCTGCCACTAATTTTTGTCGTTGTCTTAACTTTCTCTAGTATATCTTGCAAACTCTAATGCTTTAGTATGTGATCACAATACTTGCAGAAGTATCGCATATTTCTGCGAGATGTTGAAGAGAAAGGAATGGTTGGAGGCATATCTCACAGAGCTATAAGATCAAGTTTTGCATCAGGTCTACCAAGTTCTGTGATCAGAGAAATCGAAGAAAAAAGGACAAACAAACTTCATGCGCCAACACTTCAATATTTGCAAACACTGGCATATCAAACAAGAGGTGCAAACAATGTTTTTAACCATTTCAACCAATTTCCAACGCATCATGTTGGCCAATTCCCTTACATACAAAAAGGGTTGGCTCTTCAAGATTGGGAACAAGTTAGGCTTGGAAAATCAAAGTTGGAAGCTGATGTTGTTGCGGAGAATAATGGCCATGGTCAAAACAGGTTTGGAATAAGCTCTTCAAAGCTTCCATTTTTTCAAGCAAAAAACTCATTCCATGATGGTGCTTCCACTAGCTTTTCATCATATAGAGGAGAACAAGGATTGATGGTTTCTTCTTCTTCAAGTTTGTTAACAAGGGATTTTAAATTTGGTGACATTAGAAACCAGACTCATGGTGTTAAAAATTCTAACTTTGGATCTTTGGCAAGCCCTAATATTATGCCTCACAAGTTTACTTCTGATGTAAGAAACAATAACCATTTTGGAATTCAGCTGAATAATGGAGCAGAAATGGTTGGAATTGGAACTATGAATAATGGATTAAGGGATTCTAGTGCAAATAACAATAGTTTTTGCTTCAACGAAAGGGGTCAAAATGAAAATATAAATTTTAGATCTTTTGTGAATGAAAAATTTGGTTTGGTTCAAGGAGGGTTTGCTCTGGATTCTATTTCTGATATTAGGGGAGGGAGTGGAAGAAAGTTTCTAGCAGGATCAGTTAATAATGAAGGAAATGTTTCAAAGAATAGACAATTTACTCAACGTGACTTAGATGGAAATGTTGTGGGAAATGAGCAAAAGTATAATAGTGCTACTTTCACTAATGAGGTTGGGTTCAACAAAATTGAATTCAACAATTTTGATTACTTAATGGATGATGACAAGAATCTCCGCAACAAG

Protein sequence

>MS.gene94437.t1

MSEDNRPSLISKTLENGAAQYIVKPFCAEDFKDIWKYVMEAKKEKLFIESLFVRSEEEEISSEPKNKKKHCKRKSKECQGERDIQVVKKQKLVWTPYLHKMFLLAINQIGLEKAVPKKILEIMNIPNLTRENVASHLQKYRIFLRDVEEKGMVGGISHRAIRSSFASGLPSSVIREIEEKRTNKLHAPTLQYLQTLAYQTRGANNVFNHFNQFPTHHVGQFPYIQKGLALQDWEQVRLGKSKLEADVVAENNGHGQNRFGISSSKLPFFQAKNSFHDGASTSFSSYRGEQGLMVSSSSSLLTRDFKFGDIRNQTHGVKNSNFGSLASPNIMPHKFTSDVRNNNHFGIQLNNGAEMVGIGTMNNGLRDSSANNNSFCFNERGQNENINFRSFVNEKFGLVQGGFALDSISDIRGGSGRKFLAGSVNNEGNVSKNRQFTQRDLDGNVVGNEQKYNSATFTNEVGFNKIEFNNFDYLMDDDKNLRNK