Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94445.t1 | XP_013451538.1 | 84.9 | 212 | 22 | 2 | 1 | 202 | 1 | 212 | 1.60E-89 | 339 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94445.t1 | Q9SRV3 | 58.4 | 161 | 55 | 1 | 1 | 149 | 1 | 161 | 1.1e-40 | 167.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94445.t1 | A0A072U858 | 84.9 | 212 | 22 | 2 | 1 | 202 | 1 | 212 | 1.1e-89 | 339.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene94445.t1 | TF | LOB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94445.t1 | MTR_6g027710 | 87.264 | 212 | 17 | 2 | 1 | 202 | 1 | 212 | 3.36e-120 | 340 |
MS.gene94445.t1 | MTR_6g027700 | 56.477 | 193 | 56 | 5 | 36 | 202 | 4 | 194 | 9.83e-64 | 196 |
MS.gene94445.t1 | MTR_7g096530 | 68.932 | 103 | 32 | 0 | 38 | 140 | 13 | 115 | 3.06e-48 | 157 |
MS.gene94445.t1 | MTR_1g070205 | 61.017 | 118 | 44 | 1 | 39 | 156 | 12 | 127 | 9.17e-48 | 156 |
MS.gene94445.t1 | MTR_7g096610 | 68.627 | 102 | 32 | 0 | 38 | 139 | 7 | 108 | 2.40e-47 | 155 |
MS.gene94445.t1 | MTR_8g036085 | 68.627 | 102 | 32 | 0 | 39 | 140 | 23 | 124 | 2.53e-47 | 155 |
MS.gene94445.t1 | MTR_1g070220 | 66.337 | 101 | 34 | 0 | 39 | 139 | 15 | 115 | 9.05e-47 | 153 |
MS.gene94445.t1 | MTR_8g036105 | 60.504 | 119 | 46 | 1 | 39 | 156 | 18 | 136 | 2.61e-45 | 149 |
MS.gene94445.t1 | MTR_5g080470 | 54.622 | 119 | 54 | 0 | 38 | 156 | 6 | 124 | 4.33e-45 | 148 |
MS.gene94445.t1 | MTR_7g074990 | 62.745 | 102 | 38 | 0 | 39 | 140 | 20 | 121 | 1.33e-44 | 148 |
MS.gene94445.t1 | MTR_7g075230 | 51.034 | 145 | 58 | 4 | 39 | 181 | 12 | 145 | 8.72e-40 | 135 |
MS.gene94445.t1 | MTR_4g083680 | 42.105 | 152 | 78 | 3 | 38 | 183 | 14 | 161 | 4.51e-37 | 127 |
MS.gene94445.t1 | MTR_4g105170 | 54.128 | 109 | 49 | 1 | 38 | 146 | 10 | 117 | 1.91e-36 | 126 |
MS.gene94445.t1 | MTR_3g071590 | 43.972 | 141 | 70 | 2 | 38 | 170 | 7 | 146 | 4.29e-36 | 124 |
MS.gene94445.t1 | MTR_3g031660 | 51.923 | 104 | 49 | 1 | 38 | 141 | 6 | 108 | 1.67e-35 | 123 |
MS.gene94445.t1 | MTR_7g033800 | 54.808 | 104 | 46 | 1 | 38 | 141 | 10 | 112 | 2.43e-35 | 122 |
MS.gene94445.t1 | MTR_6g005070 | 50.862 | 116 | 54 | 2 | 38 | 153 | 8 | 120 | 2.52e-35 | 122 |
MS.gene94445.t1 | MTR_5g083960 | 42.282 | 149 | 85 | 1 | 1 | 149 | 1 | 148 | 2.72e-35 | 123 |
MS.gene94445.t1 | MTR_3g077240 | 53.636 | 110 | 48 | 2 | 38 | 147 | 9 | 115 | 4.52e-35 | 122 |
MS.gene94445.t1 | MTR_2g068760 | 45.378 | 119 | 64 | 1 | 27 | 145 | 1 | 118 | 8.32e-35 | 121 |
MS.gene94445.t1 | MTR_3g094690 | 51.786 | 112 | 53 | 1 | 37 | 148 | 45 | 155 | 1.46e-34 | 122 |
MS.gene94445.t1 | MTR_5g083010 | 52.427 | 103 | 48 | 1 | 38 | 140 | 10 | 111 | 1.49e-34 | 120 |
MS.gene94445.t1 | MTR_2g093310 | 41.497 | 147 | 74 | 4 | 36 | 171 | 30 | 175 | 1.63e-34 | 121 |
MS.gene94445.t1 | MTR_4g060950 | 39.264 | 163 | 90 | 4 | 36 | 191 | 21 | 181 | 3.73e-34 | 120 |
MS.gene94445.t1 | MTR_5g083230 | 47.059 | 119 | 60 | 2 | 38 | 156 | 5 | 120 | 7.71e-34 | 119 |
MS.gene94445.t1 | MTR_5g017950 | 54.369 | 103 | 46 | 1 | 38 | 140 | 7 | 108 | 4.56e-33 | 120 |
MS.gene94445.t1 | MTR_6g005080 | 48.276 | 116 | 57 | 2 | 38 | 153 | 9 | 121 | 5.07e-33 | 115 |
MS.gene94445.t1 | MTR_3g094690 | 51.786 | 112 | 52 | 2 | 37 | 148 | 45 | 154 | 9.38e-33 | 118 |
MS.gene94445.t1 | MTR_3g073690 | 52.427 | 103 | 48 | 1 | 38 | 140 | 8 | 109 | 2.06e-32 | 116 |
MS.gene94445.t1 | MTR_3g071420 | 50.000 | 98 | 48 | 1 | 38 | 135 | 13 | 109 | 1.26e-31 | 113 |
MS.gene94445.t1 | MTR_3g452660 | 47.009 | 117 | 58 | 2 | 38 | 154 | 6 | 118 | 1.12e-30 | 114 |
MS.gene94445.t1 | MTR_5g075020 | 53.704 | 108 | 49 | 1 | 37 | 144 | 41 | 147 | 4.21e-30 | 110 |
MS.gene94445.t1 | MTR_5g075020 | 53.704 | 108 | 49 | 1 | 37 | 144 | 45 | 151 | 6.65e-30 | 110 |
MS.gene94445.t1 | MTR_1g095850 | 45.217 | 115 | 60 | 2 | 40 | 153 | 73 | 185 | 4.73e-29 | 108 |
MS.gene94445.t1 | MTR_5g093010 | 45.455 | 110 | 59 | 1 | 36 | 145 | 2 | 110 | 1.47e-28 | 104 |
MS.gene94445.t1 | MTR_7g028905 | 43.636 | 110 | 61 | 1 | 36 | 145 | 2 | 110 | 1.74e-28 | 103 |
MS.gene94445.t1 | MTR_8g040900 | 58.537 | 82 | 33 | 1 | 38 | 119 | 6 | 86 | 6.34e-28 | 105 |
MS.gene94445.t1 | MTR_8g079660 | 45.714 | 105 | 56 | 1 | 36 | 140 | 5 | 108 | 2.05e-26 | 102 |
MS.gene94445.t1 | MTR_8g079620 | 39.815 | 108 | 64 | 1 | 33 | 140 | 2 | 108 | 6.45e-23 | 92.4 |
MS.gene94445.t1 | MTR_8g079580 | 36.641 | 131 | 77 | 3 | 34 | 163 | 3 | 128 | 5.71e-21 | 87.0 |
MS.gene94445.t1 | MTR_2g100020 | 38.614 | 101 | 61 | 1 | 40 | 140 | 20 | 119 | 2.61e-20 | 86.3 |
MS.gene94445.t1 | MTR_4g107450 | 41.584 | 101 | 58 | 1 | 40 | 140 | 11 | 110 | 4.93e-20 | 85.9 |
MS.gene94445.t1 | MTR_8g017090 | 38.614 | 101 | 61 | 1 | 40 | 140 | 13 | 112 | 7.64e-19 | 82.8 |
MS.gene94445.t1 | MTR_6g011250 | 45.679 | 81 | 42 | 2 | 40 | 119 | 10 | 89 | 4.39e-18 | 78.6 |
MS.gene94445.t1 | MTR_6g011230 | 36.634 | 101 | 63 | 1 | 40 | 140 | 12 | 111 | 6.24e-18 | 78.6 |
MS.gene94445.t1 | MTR_6g011200 | 33.945 | 109 | 67 | 3 | 36 | 140 | 3 | 110 | 3.33e-16 | 74.7 |
MS.gene94445.t1 | MTR_4g099230 | 41.975 | 81 | 45 | 2 | 40 | 119 | 3 | 82 | 4.38e-15 | 69.7 |
MS.gene94445.t1 | MTR_5g085390 | 34.862 | 109 | 66 | 3 | 36 | 140 | 3 | 110 | 1.63e-13 | 67.4 |
MS.gene94445.t1 | MTR_4g088035 | 30.682 | 88 | 60 | 1 | 40 | 127 | 7 | 93 | 8.18e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene94445.t1 | AT3G03760 | 70.833 | 144 | 38 | 1 | 38 | 177 | 50 | 193 | 5.86e-66 | 204 |
MS.gene94445.t1 | AT2G42430 | 55.263 | 152 | 49 | 2 | 38 | 170 | 14 | 165 | 3.71e-50 | 163 |
MS.gene94445.t1 | AT3G58190 | 61.864 | 118 | 44 | 1 | 39 | 156 | 11 | 127 | 2.10e-48 | 157 |
MS.gene94445.t1 | AT5G06080 | 49.306 | 144 | 64 | 1 | 38 | 181 | 6 | 140 | 9.49e-46 | 149 |
MS.gene94445.t1 | AT2G42440 | 52.593 | 135 | 61 | 1 | 38 | 172 | 6 | 137 | 1.69e-44 | 148 |
MS.gene94445.t1 | AT4G00220 | 64.423 | 104 | 37 | 0 | 42 | 145 | 20 | 123 | 2.21e-44 | 147 |
MS.gene94445.t1 | AT2G45420 | 65.385 | 104 | 36 | 0 | 42 | 145 | 40 | 143 | 2.28e-44 | 149 |
MS.gene94445.t1 | AT2G31310 | 59.804 | 102 | 41 | 0 | 38 | 139 | 6 | 107 | 9.07e-44 | 145 |
MS.gene94445.t1 | AT4G00210 | 62.745 | 102 | 38 | 0 | 39 | 140 | 11 | 112 | 1.16e-42 | 143 |
MS.gene94445.t1 | AT2G45410 | 50.000 | 140 | 61 | 3 | 42 | 179 | 19 | 151 | 1.30e-39 | 134 |
MS.gene94445.t1 | AT3G27650 | 55.769 | 104 | 45 | 1 | 38 | 141 | 38 | 140 | 2.40e-36 | 125 |
MS.gene94445.t1 | AT2G30130 | 48.760 | 121 | 59 | 2 | 38 | 158 | 7 | 124 | 8.52e-35 | 122 |
MS.gene94445.t1 | AT5G63090 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.87e-34 | 120 |
MS.gene94445.t1 | AT5G63090 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.87e-34 | 120 |
MS.gene94445.t1 | AT5G63090 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.87e-34 | 120 |
MS.gene94445.t1 | AT5G63090 | 52.294 | 109 | 51 | 1 | 38 | 146 | 10 | 117 | 3.87e-34 | 120 |
MS.gene94445.t1 | AT1G07900 | 45.378 | 119 | 62 | 2 | 36 | 153 | 30 | 146 | 7.31e-34 | 119 |
MS.gene94445.t1 | AT1G16530 | 49.541 | 109 | 53 | 2 | 37 | 144 | 12 | 119 | 1.04e-33 | 118 |
MS.gene94445.t1 | AT2G30340 | 47.863 | 117 | 58 | 2 | 37 | 153 | 51 | 164 | 2.80e-33 | 120 |
MS.gene94445.t1 | AT2G30340 | 47.863 | 117 | 58 | 2 | 37 | 153 | 50 | 163 | 3.01e-33 | 120 |
MS.gene94445.t1 | AT5G66870 | 45.070 | 142 | 73 | 2 | 38 | 179 | 6 | 142 | 5.76e-33 | 120 |
MS.gene94445.t1 | AT3G11090 | 49.038 | 104 | 52 | 1 | 38 | 141 | 10 | 112 | 7.13e-33 | 116 |
MS.gene94445.t1 | AT2G28500 | 47.748 | 111 | 55 | 2 | 36 | 145 | 52 | 160 | 1.31e-32 | 117 |
MS.gene94445.t1 | AT1G31320 | 46.218 | 119 | 63 | 1 | 27 | 145 | 1 | 118 | 4.91e-32 | 114 |
MS.gene94445.t1 | AT2G23660 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.36e-29 | 111 |
MS.gene94445.t1 | AT2G23660 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.36e-29 | 111 |
MS.gene94445.t1 | AT2G23660 | 46.154 | 104 | 55 | 1 | 38 | 141 | 4 | 106 | 1.36e-29 | 111 |
MS.gene94445.t1 | AT1G65620 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.88e-29 | 108 |
MS.gene94445.t1 | AT1G65620 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.88e-29 | 108 |
MS.gene94445.t1 | AT1G65620 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.88e-29 | 108 |
MS.gene94445.t1 | AT1G65620 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.88e-29 | 108 |
MS.gene94445.t1 | AT1G65620 | 54.369 | 103 | 46 | 1 | 38 | 140 | 8 | 109 | 2.88e-29 | 108 |
MS.gene94445.t1 | AT3G26660 | 45.370 | 108 | 51 | 2 | 40 | 140 | 6 | 112 | 3.03e-29 | 105 |
MS.gene94445.t1 | AT3G26620 | 45.370 | 108 | 51 | 2 | 40 | 140 | 6 | 112 | 4.76e-29 | 105 |
MS.gene94445.t1 | AT2G40470 | 52.500 | 120 | 55 | 2 | 37 | 156 | 18 | 135 | 6.49e-29 | 107 |
MS.gene94445.t1 | AT2G40470 | 51.282 | 117 | 56 | 1 | 37 | 153 | 43 | 158 | 7.76e-29 | 107 |
MS.gene94445.t1 | AT3G50510 | 39.450 | 109 | 65 | 1 | 32 | 140 | 5 | 112 | 1.15e-23 | 93.6 |
MS.gene94445.t1 | AT3G50510 | 39.450 | 109 | 65 | 1 | 32 | 140 | 5 | 112 | 1.15e-23 | 93.6 |
MS.gene94445.t1 | AT3G13850 | 32.298 | 161 | 103 | 2 | 40 | 200 | 37 | 191 | 4.77e-20 | 85.5 |
MS.gene94445.t1 | AT1G72980 | 38.835 | 103 | 62 | 1 | 38 | 140 | 12 | 113 | 1.00e-19 | 83.6 |
MS.gene94445.t1 | AT5G35900 | 33.663 | 101 | 66 | 1 | 40 | 140 | 6 | 105 | 3.59e-16 | 73.9 |
MS.gene94445.t1 | AT3G47870 | 32.673 | 101 | 67 | 1 | 40 | 140 | 37 | 136 | 5.21e-15 | 72.4 |
MS.gene94445.t1 | AT1G06280 | 42.667 | 75 | 42 | 1 | 40 | 114 | 25 | 98 | 1.38e-14 | 69.7 |
MS.gene94445.t1 | AT4G22700 | 32.292 | 96 | 62 | 2 | 40 | 134 | 6 | 99 | 1.55e-12 | 63.9 |
Find 54 sgRNAs with CRISPR-Local
Find 59 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTGAAACGGCGGCTGATA+TGG | 0.240934 | 5.1:-29942690 | None:intergenic |
AGGCTAGCTGATCCGGTTTA+TGG | 0.264632 | 5.1:+29942430 | MS.gene94445:CDS |
AACAACTTCAACCCTGGTTT+TGG | 0.268597 | 5.1:+29942771 | MS.gene94445:CDS |
GGTGGTGATGGTAGTAGTTC+GGG | 0.392136 | 5.1:+29942127 | MS.gene94445:CDS |
TGCATCTTTGCACCCTACTT+TGG | 0.399115 | 5.1:+29942271 | MS.gene94445:CDS |
TGAAGTTGTTCATGTTCATA+AGG | 0.399289 | 5.1:-29942758 | None:intergenic |
TAGCCTAGCTTGAGCCTCAT+AGG | 0.409914 | 5.1:-29942413 | None:intergenic |
ATGGTAGTAGTTCGGGAAAC+AGG | 0.414773 | 5.1:+29942134 | MS.gene94445:CDS |
ATTGAAACGGCGGCTGATAT+GGG | 0.422968 | 5.1:-29942689 | None:intergenic |
CATTCTTGCGTTGCAGCAAC+AGG | 0.423025 | 5.1:+29942465 | MS.gene94445:CDS |
GCGGCTGTGCACAAGGTGTT+TGG | 0.424834 | 5.1:+29942319 | MS.gene94445:CDS |
AAATAGTCGCCGCAGCTTCA+TGG | 0.427210 | 5.1:-29942390 | None:intergenic |
AAACTCAATTGATGAATAAG+AGG | 0.436075 | 5.1:+29942634 | MS.gene94445:CDS |
AGGTGGTGATGGTAGTAGTT+CGG | 0.439949 | 5.1:+29942126 | MS.gene94445:CDS |
TCAAGCTAGGCTAGCTGATC+CGG | 0.442761 | 5.1:+29942423 | MS.gene94445:CDS |
GCTTCATGGCGATGGTTAGC+AGG | 0.475962 | 5.1:-29942376 | None:intergenic |
GTTGTTCATGTTCATAAGGT+TGG | 0.485083 | 5.1:-29942754 | None:intergenic |
GCACCACACGGAGATATAAT+CGG | 0.498285 | 5.1:-29942214 | None:intergenic |
GGCTACAAGCTCTGTGATGA+AGG | 0.499636 | 5.1:-29942813 | None:intergenic |
TTGAGGAGGAAGTGTAGTAG+TGG | 0.503180 | 5.1:+29942247 | MS.gene94445:CDS |
GTGGACACACAACCATAAAC+CGG | 0.504022 | 5.1:-29942442 | None:intergenic |
TCCATTGTGAGGCCAAAACC+AGG | 0.513069 | 5.1:-29942783 | None:intergenic |
GGTGGAAGCAGATGAGTTGT+TGG | 0.513070 | 5.1:-29942730 | None:intergenic |
AACATGAACAACTTCAACCC+TGG | 0.523993 | 5.1:+29942765 | MS.gene94445:CDS |
AAATGCTGCAAAGCGTGCAA+TGG | 0.533586 | 5.1:+29942171 | MS.gene94445:CDS |
CCAAGGTGCAGCTAAGTTTG+CGG | 0.534415 | 5.1:+29942300 | MS.gene94445:CDS |
GTTCATGTTCATAAGGTTGG+TGG | 0.542354 | 5.1:-29942751 | None:intergenic |
CTGTTGCTGCAACGCAAGAA+TGG | 0.544722 | 5.1:-29942464 | None:intergenic |
ACCTTGGTCAGTACCAAAGT+AGG | 0.564783 | 5.1:-29942284 | None:intergenic |
TCGCCGCAGCTTCATGGCGA+TGG | 0.568449 | 5.1:-29942384 | None:intergenic |
GCTGGCTGCACAAATTGAAA+CGG | 0.572987 | 5.1:-29942702 | None:intergenic |
CATGTTCATAAGGTTGGTGG+TGG | 0.580499 | 5.1:-29942748 | None:intergenic |
TAAGTTTGCGGCTGTGCACA+AGG | 0.581391 | 5.1:+29942312 | MS.gene94445:CDS |
GCTGAGTCACAAGGTGGTGA+TGG | 0.582631 | 5.1:+29942115 | MS.gene94445:CDS |
TTTCCTATGAGGCTCAAGCT+AGG | 0.592261 | 5.1:+29942410 | MS.gene94445:CDS |
CCTTGGTCAGTACCAAAGTA+GGG | 0.597516 | 5.1:-29942283 | None:intergenic |
TGCGGCGACTATTTCCTATG+AGG | 0.598387 | 5.1:+29942399 | MS.gene94445:CDS |
CCGCAAACTTAGCTGCACCT+TGG | 0.601831 | 5.1:-29942300 | None:intergenic |
TTGAAACGGCGGCTGATATG+GGG | 0.604833 | 5.1:-29942688 | None:intergenic |
GATGAGTTGTTGGAATATGC+TGG | 0.605347 | 5.1:-29942720 | None:intergenic |
CCCTACTTTGGTACTGACCA+AGG | 0.613176 | 5.1:+29942283 | MS.gene94445:CDS |
GCGATGGTTAGCAGGAACGT+TGG | 0.641177 | 5.1:-29942368 | None:intergenic |
GTGGTGCTTGCAAGTTCTTG+AGG | 0.646814 | 5.1:+29942230 | MS.gene94445:CDS |
TAACCATCGCCATGAAGCTG+CGG | 0.649980 | 5.1:+29942381 | MS.gene94445:CDS |
TTGCTGCAACGCAAGAATGG+TGG | 0.657163 | 5.1:-29942461 | None:intergenic |
GGCTGCACAAATTGAAACGG+CGG | 0.671846 | 5.1:-29942699 | None:intergenic |
GGTGGCAGCTATGCAAGCAG+AGG | 0.672106 | 5.1:+29942599 | MS.gene94445:intron |
TCTGTGATGGCTGAGTCACA+AGG | 0.673947 | 5.1:+29942106 | None:intergenic |
GTGCTTGCAAGTTCTTGAGG+AGG | 0.680170 | 5.1:+29942233 | MS.gene94445:CDS |
AAGAACTTGCAAGCACCACA+CGG | 0.685626 | 5.1:-29942226 | None:intergenic |
CCATTGTGAGGCCAAAACCA+GGG | 0.697828 | 5.1:-29942782 | None:intergenic |
AAGGTGTTGTCTCCATTGTG+AGG | 0.699953 | 5.1:-29942794 | None:intergenic |
GAACCGATTATATCTCCGTG+TGG | 0.743633 | 5.1:+29942211 | MS.gene94445:CDS |
GTGATGGCTGAGTCACAAGG+TGG | 0.752882 | 5.1:+29942109 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTCTGCAAATGATTTATTAA+AGG | - | chr5.1:29942538-29942557 | None:intergenic | 20.0% |
!!! | AATCATTTGCAGAATATTTT+CGG | + | chr5.1:29942544-29942563 | MS.gene94445:intron | 20.0% |
! | AAACTCAATTGATGAATAAG+AGG | + | chr5.1:29942634-29942653 | MS.gene94445:CDS | 25.0% |
! | AAGATGAATAACTTACCTTA+TGG | + | chr5.1:29942568-29942587 | MS.gene94445:intron | 25.0% |
TGAAGTTGTTCATGTTCATA+AGG | - | chr5.1:29942761-29942780 | None:intergenic | 30.0% | |
GTTGTTCATGTTCATAAGGT+TGG | - | chr5.1:29942757-29942776 | None:intergenic | 35.0% | |
AACATGAACAACTTCAACCC+TGG | + | chr5.1:29942765-29942784 | MS.gene94445:CDS | 40.0% | |
GATGAGTTGTTGGAATATGC+TGG | - | chr5.1:29942723-29942742 | None:intergenic | 40.0% | |
GTTCATGTTCATAAGGTTGG+TGG | - | chr5.1:29942754-29942773 | None:intergenic | 40.0% | |
! | AACAACTTCAACCCTGGTTT+TGG | + | chr5.1:29942771-29942790 | MS.gene94445:CDS | 40.0% |
! | ACTTACCTTATGGCTGATTC+AGG | + | chr5.1:29942578-29942597 | MS.gene94445:intron | 40.0% |
AAATGCTGCAAAGCGTGCAA+TGG | + | chr5.1:29942171-29942190 | MS.gene94445:CDS | 45.0% | |
AAGAACTTGCAAGCACCACA+CGG | - | chr5.1:29942229-29942248 | None:intergenic | 45.0% | |
AATTGAAACGGCGGCTGATA+TGG | - | chr5.1:29942693-29942712 | None:intergenic | 45.0% | |
ACCTTGGTCAGTACCAAAGT+AGG | - | chr5.1:29942287-29942306 | None:intergenic | 45.0% | |
ATGGTAGTAGTTCGGGAAAC+AGG | + | chr5.1:29942134-29942153 | MS.gene94445:CDS | 45.0% | |
ATTGAAACGGCGGCTGATAT+GGG | - | chr5.1:29942692-29942711 | None:intergenic | 45.0% | |
CCTTGGTCAGTACCAAAGTA+GGG | - | chr5.1:29942286-29942305 | None:intergenic | 45.0% | |
GAACCGATTATATCTCCGTG+TGG | + | chr5.1:29942211-29942230 | MS.gene94445:CDS | 45.0% | |
GCACCACACGGAGATATAAT+CGG | - | chr5.1:29942217-29942236 | None:intergenic | 45.0% | |
GCTGGCTGCACAAATTGAAA+CGG | - | chr5.1:29942705-29942724 | None:intergenic | 45.0% | |
GTGGACACACAACCATAAAC+CGG | - | chr5.1:29942445-29942464 | None:intergenic | 45.0% | |
TGCATCTTTGCACCCTACTT+TGG | + | chr5.1:29942271-29942290 | MS.gene94445:CDS | 45.0% | |
TTTCCTATGAGGCTCAAGCT+AGG | + | chr5.1:29942410-29942429 | MS.gene94445:CDS | 45.0% | |
! | TACCTTATGGCTGATTCAGG+TGG | + | chr5.1:29942581-29942600 | MS.gene94445:intron | 45.0% |
! | TTGAGGAGGAAGTGTAGTAG+TGG | + | chr5.1:29942247-29942266 | MS.gene94445:CDS | 45.0% |
!! | AAGGTGTTGTCTCCATTGTG+AGG | - | chr5.1:29942797-29942816 | None:intergenic | 45.0% |
!! | AGGTGGTGATGGTAGTAGTT+CGG | + | chr5.1:29942126-29942145 | MS.gene94445:CDS | 45.0% |
!! | CATGTTCATAAGGTTGGTGG+TGG | - | chr5.1:29942751-29942770 | None:intergenic | 45.0% |
AAATAGTCGCCGCAGCTTCA+TGG | - | chr5.1:29942393-29942412 | None:intergenic | 50.0% | |
CATTCTTGCGTTGCAGCAAC+AGG | + | chr5.1:29942465-29942484 | MS.gene94445:CDS | 50.0% | |
CCAAGGTGCAGCTAAGTTTG+CGG | + | chr5.1:29942300-29942319 | MS.gene94445:CDS | 50.0% | |
CCATTGTGAGGCCAAAACCA+GGG | - | chr5.1:29942785-29942804 | None:intergenic | 50.0% | |
CTGTTGCTGCAACGCAAGAA+TGG | - | chr5.1:29942467-29942486 | None:intergenic | 50.0% | |
GGCTGCACAAATTGAAACGG+CGG | - | chr5.1:29942702-29942721 | None:intergenic | 50.0% | |
GGTGGAAGCAGATGAGTTGT+TGG | - | chr5.1:29942733-29942752 | None:intergenic | 50.0% | |
GTGCTTGCAAGTTCTTGAGG+AGG | + | chr5.1:29942233-29942252 | MS.gene94445:CDS | 50.0% | |
GTGGTGCTTGCAAGTTCTTG+AGG | + | chr5.1:29942230-29942249 | MS.gene94445:CDS | 50.0% | |
TAACCATCGCCATGAAGCTG+CGG | + | chr5.1:29942381-29942400 | MS.gene94445:CDS | 50.0% | |
TAAGTTTGCGGCTGTGCACA+AGG | + | chr5.1:29942312-29942331 | MS.gene94445:CDS | 50.0% | |
TAGCCTAGCTTGAGCCTCAT+AGG | - | chr5.1:29942416-29942435 | None:intergenic | 50.0% | |
TCCATTGTGAGGCCAAAACC+AGG | - | chr5.1:29942786-29942805 | None:intergenic | 50.0% | |
TGCCACCTGAATCAGCCATA+AGG | - | chr5.1:29942586-29942605 | None:intergenic | 50.0% | |
TGCGGCGACTATTTCCTATG+AGG | + | chr5.1:29942399-29942418 | MS.gene94445:CDS | 50.0% | |
TTGAAACGGCGGCTGATATG+GGG | - | chr5.1:29942691-29942710 | None:intergenic | 50.0% | |
TTGCTGCAACGCAAGAATGG+TGG | - | chr5.1:29942464-29942483 | None:intergenic | 50.0% | |
! | AGGCTAGCTGATCCGGTTTA+TGG | + | chr5.1:29942430-29942449 | MS.gene94445:CDS | 50.0% |
! | TCAAGCTAGGCTAGCTGATC+CGG | + | chr5.1:29942423-29942442 | MS.gene94445:CDS | 50.0% |
!! | CCCTACTTTGGTACTGACCA+AGG | + | chr5.1:29942283-29942302 | MS.gene94445:CDS | 50.0% |
!! | GGTGGTGATGGTAGTAGTTC+GGG | + | chr5.1:29942127-29942146 | MS.gene94445:CDS | 50.0% |
CCGCAAACTTAGCTGCACCT+TGG | - | chr5.1:29942303-29942322 | None:intergenic | 55.0% | |
GCGATGGTTAGCAGGAACGT+TGG | - | chr5.1:29942371-29942390 | None:intergenic | 55.0% | |
GCTGAGTCACAAGGTGGTGA+TGG | + | chr5.1:29942115-29942134 | MS.gene94445:CDS | 55.0% | |
GCTTCATGGCGATGGTTAGC+AGG | - | chr5.1:29942379-29942398 | None:intergenic | 55.0% | |
TCTTGCGTTGCAGCAACAGG+TGG | + | chr5.1:29942468-29942487 | MS.gene94445:intron | 55.0% | |
!!! | CCCTGGTTTTGGCCTCACAA+TGG | + | chr5.1:29942782-29942801 | MS.gene94445:CDS | 55.0% |
GGTGGCAGCTATGCAAGCAG+AGG | + | chr5.1:29942599-29942618 | MS.gene94445:intron | 60.0% | |
! | GCGGCTGTGCACAAGGTGTT+TGG | + | chr5.1:29942319-29942338 | MS.gene94445:CDS | 60.0% |
TCGCCGCAGCTTCATGGCGA+TGG | - | chr5.1:29942387-29942406 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 29942112 | 29942833 | 29942112 | ID=MS.gene94445 |
chr5.1 | mRNA | 29942112 | 29942833 | 29942112 | ID=MS.gene94445.t1;Parent=MS.gene94445 |
chr5.1 | exon | 29942112 | 29942486 | 29942112 | ID=MS.gene94445.t1.exon1;Parent=MS.gene94445.t1 |
chr5.1 | CDS | 29942112 | 29942486 | 29942112 | ID=cds.MS.gene94445.t1;Parent=MS.gene94445.t1 |
chr5.1 | exon | 29942600 | 29942833 | 29942600 | ID=MS.gene94445.t1.exon2;Parent=MS.gene94445.t1 |
chr5.1 | CDS | 29942600 | 29942833 | 29942600 | ID=cds.MS.gene94445.t1;Parent=MS.gene94445.t1 |
Gene Sequence |
Protein sequence |