AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94803.t1 MTR_3g450850 65.986 294 88 3 1 290 1 286 1.22e-126 382
MS.gene94803.t1 MTR_4g035820 42.164 268 138 5 45 306 68 324 1.00e-57 209
MS.gene94803.t1 MTR_4g035820 46.875 96 51 0 439 534 326 421 6.53e-20 95.1
MS.gene94803.t1 MTR_4g071400 70.968 124 33 1 594 717 1 121 2.70e-53 180
MS.gene94803.t1 MTR_3g012160 87.097 93 12 0 199 291 1 93 2.68e-48 165
MS.gene94803.t1 MTR_1g070355 34.510 255 150 8 45 296 69 309 2.77e-31 130
MS.gene94803.t1 MTR_6g051425 29.286 280 185 5 55 329 18 289 1.49e-30 123
MS.gene94803.t1 MTR_5g076070 27.542 236 160 5 57 290 56 282 2.12e-24 104
MS.gene94803.t1 MTR_5g083630 58.571 70 23 1 194 257 7 76 2.69e-19 84.3
MS.gene94803.t1 MTR_6g014355 37.013 154 80 4 133 277 14 159 1.28e-17 83.6
MS.gene94803.t1 MTR_3g095940 72.000 50 13 1 508 556 94 143 1.56e-15 74.7
MS.gene94803.t1 MTR_6g022080 38.406 138 70 6 66 198 97 224 6.10e-15 75.9
MS.gene94803.t1 MTR_0558s0020 25.954 262 170 7 59 302 41 296 1.02e-13 73.2
MS.gene94803.t1 MTR_7g446520 27.165 254 148 8 60 305 94 318 7.88e-13 70.9
MS.gene94803.t1 MTR_1g019850 29.518 166 88 6 37 195 55 198 2.89e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94803.t1 AT1G10240 49.206 630 309 4 48 672 42 665 0.0 642
MS.gene94803.t1 AT1G10240 49.206 630 309 4 48 672 42 665 0.0 642
MS.gene94803.t1 AT5G28530 43.407 675 338 11 25 678 28 679 0.0 547
MS.gene94803.t1 AT5G28530 43.407 675 342 11 25 678 28 683 0.0 547
MS.gene94803.t1 AT5G28530 43.407 675 338 11 25 678 28 679 0.0 547
MS.gene94803.t1 AT5G28530 38.797 665 320 12 25 678 28 616 1.34e-148 448
MS.gene94803.t1 AT5G28530 38.797 665 324 12 25 678 28 620 1.71e-148 448
MS.gene94803.t1 AT4G38180 31.076 576 375 9 54 617 73 638 1.79e-84 285
MS.gene94803.t1 AT4G15090 28.716 693 443 16 54 721 51 717 6.45e-82 278
MS.gene94803.t1 AT4G15090 28.716 693 443 16 54 721 51 717 6.45e-82 278
MS.gene94803.t1 AT4G15090 28.716 693 443 16 54 721 51 717 6.45e-82 278
MS.gene94803.t1 AT4G15090 28.716 693 443 16 54 721 51 717 6.45e-82 278
MS.gene94803.t1 AT4G15090 28.716 693 443 16 54 721 51 717 6.45e-82 278
MS.gene94803.t1 AT1G76320 28.850 565 360 11 60 610 3 539 1.99e-67 236
MS.gene94803.t1 AT1G76320 28.850 565 360 11 60 610 3 539 3.59e-67 236
MS.gene94803.t1 AT1G76320 28.850 565 360 11 60 610 3 539 3.60e-67 236
MS.gene94803.t1 AT1G76320 28.850 565 360 11 60 610 3 539 3.60e-67 236
MS.gene94803.t1 AT3G22170 25.547 685 429 20 54 705 70 706 2.17e-66 236
MS.gene94803.t1 AT3G22170 25.547 685 429 20 54 705 70 706 2.17e-66 236
MS.gene94803.t1 AT5G18960 26.014 592 364 13 39 616 198 729 3.49e-59 215
MS.gene94803.t1 AT5G18960 26.014 592 364 13 39 616 198 729 3.49e-59 215
MS.gene94803.t1 AT3G06250 25.997 577 352 12 54 616 190 705 2.13e-58 212
MS.gene94803.t1 AT3G06250 25.997 577 352 12 54 616 190 705 2.13e-58 212
MS.gene94803.t1 AT3G06250 25.997 577 352 12 54 616 190 705 2.13e-58 212
MS.gene94803.t1 AT2G27110 25.896 614 403 13 54 658 49 619 4.00e-55 204
MS.gene94803.t1 AT2G27110 25.896 614 403 13 54 658 49 619 4.00e-55 204
MS.gene94803.t1 AT2G27110 28.637 433 291 9 235 658 51 474 1.02e-50 189
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 3.60e-49 186
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 3.60e-49 186
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 4.32e-49 186
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 4.32e-49 186
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 4.32e-49 186
MS.gene94803.t1 AT2G32250 24.518 571 361 11 57 615 41 553 4.64e-49 185
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 23 558 4.92e-49 185
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 23 558 5.51e-49 185
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 23 558 5.51e-49 185
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 23 558 5.61e-49 185
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 23 558 5.61e-49 185
MS.gene94803.t1 AT1G52520 25.514 584 381 16 53 613 84 636 6.08e-49 184
MS.gene94803.t1 AT4G19990 26.451 586 354 14 56 614 37 572 6.26e-49 185
MS.gene94803.t1 AT2G32250 24.472 568 359 11 60 615 3 512 8.38e-49 184
MS.gene94803.t1 AT2G32250 24.472 568 359 11 60 615 3 512 9.66e-49 184
MS.gene94803.t1 AT4G38170 27.027 481 318 10 267 726 45 513 5.39e-46 173
MS.gene94803.t1 AT1G80010 24.876 603 372 18 54 613 95 659 8.95e-46 175
MS.gene94803.t1 AT4G19990 26.248 541 337 12 86 614 11 501 9.43e-45 172
MS.gene94803.t1 AT3G59470 37.273 110 61 3 54 163 70 171 1.54e-13 71.6
MS.gene94803.t1 AT3G59470 37.273 110 61 3 54 163 70 171 1.54e-13 71.6
MS.gene94803.t1 AT3G59470 37.273 110 61 3 54 163 82 183 2.00e-13 71.6

Find 107 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGATAATTTGATTTATT+TGG 0.093166 1.4:+55650550 MS.gene94803:CDS
TCTACTCTCATCGTCAATTT+TGG 0.121901 1.4:+55649747 MS.gene94803:CDS
TACAGGTAACTTACCATTTC+TGG 0.139830 1.4:+55648975 MS.gene94803:CDS
TTGACTATATGACTGCATTT+TGG 0.141368 1.4:-55650386 None:intergenic
ACATCATAACCATCATTATT+TGG 0.153794 1.4:-55650593 None:intergenic
CTAAAGGCTTTGAAGGAAAA+TGG 0.187093 1.4:+55648773 MS.gene94803:CDS
TTCATTCAGATGGGCTTTAA+AGG 0.197395 1.4:+55649329 MS.gene94803:CDS
ACAAACTAGAGCATATTATT+TGG 0.199763 1.4:+55649136 MS.gene94803:CDS
ACAATCAGAACTTACTTATT+AGG 0.237831 1.4:-55650794 None:intergenic
TGAACGAGAATGGGAATTAA+TGG 0.241089 1.4:+55649682 MS.gene94803:CDS
ATCAAATTATCTTGACTTGC+AGG 0.274591 1.4:-55650542 None:intergenic
GAGCATATTATTTGGGCATT+TGG 0.276151 1.4:+55649144 MS.gene94803:CDS
ATTCGAGCATATGAATCTTT+TGG 0.301566 1.4:+55649174 MS.gene94803:CDS
TTGTCCTAATTAGAGAATTA+TGG 0.303893 1.4:-55650043 None:intergenic
AGTACCATAATTCTCTAATT+AGG 0.305229 1.4:+55650039 MS.gene94803:CDS
TGATTGGTTCCGCCGCAATT+TGG 0.306685 1.4:-55650713 None:intergenic
GTGACAACGTCGAAGCTTCT+TGG 0.321956 1.4:-55650687 None:intergenic
AATCATCTATAGATTCTAAA+TGG 0.332504 1.4:-55649658 None:intergenic
GAATTAATGGTTGCACAATT+TGG 0.333830 1.4:+55649695 MS.gene94803:CDS
TTTGCAGCATGTTCCTCAAT+AGG 0.334456 1.4:-55650071 None:intergenic
GCAGCTTCAACTCCACCTTT+TGG 0.341287 1.4:-55650665 None:intergenic
AAATTCCTCCGACAGATAAA+AGG 0.354413 1.4:+55650515 MS.gene94803:CDS
CATATAGTCAAATGCAATAA+TGG 0.354919 1.4:+55650398 MS.gene94803:CDS
ACTTTAAACAGGAGTTTCAT+AGG 0.356852 1.4:+55649630 MS.gene94803:CDS
CTAATATCCTTCTCCAGAAA+TGG 0.365717 1.4:-55648988 None:intergenic
TGCCACTTGGAATGTGGATT+GGG 0.366378 1.4:+55649244 MS.gene94803:CDS
CAAACTAGAGCATATTATTT+GGG 0.370107 1.4:+55649137 MS.gene94803:CDS
TCAGTCTCTAATTCGATGTT+TGG 0.382120 1.4:+55650436 MS.gene94803:CDS
TTGGTTTCTAAAGGCTTTGA+AGG 0.384106 1.4:+55648766 MS.gene94803:CDS
GAGATATATTGACTTTAAAC+AGG 0.399521 1.4:+55649619 MS.gene94803:CDS
TTTGCTGGGATGACGACAAC+TGG 0.403764 1.4:+55649797 MS.gene94803:CDS
ATGTAAAAGTCTGAAAGATA+TGG 0.416400 1.4:+55649074 MS.gene94803:CDS
TAAAGGCTTTGAAGGAAAAT+GGG 0.419353 1.4:+55648774 MS.gene94803:CDS
TCATGAACAGTACTAGTTCC+AGG 0.424449 1.4:-55648478 None:intergenic
AAATACATTGTAAAATTCAT+AGG 0.433492 1.4:-55648545 None:intergenic
TTTGGAACATCGGGTACATT+GGG 0.437206 1.4:-55650575 None:intergenic
TTGGGGCCTAGCTTATTTGA+AGG 0.438270 1.4:+55649766 MS.gene94803:CDS
GCAAAGTTGTTGGTTTCTAA+AGG 0.440350 1.4:+55648757 MS.gene94803:CDS
GAACTAGTACTGTTCATGAA+TGG 0.450674 1.4:+55648482 MS.gene94803:CDS
CCATGAGTTATTAGATGATA+AGG 0.455510 1.4:+55648825 MS.gene94803:CDS
TGGATTAACTCAAACGCATA+TGG 0.457746 1.4:-55650104 None:intergenic
CCATCATTATTTGGAACATC+GGG 0.457944 1.4:-55650584 None:intergenic
ACAATTCCGCGAGTCATGAT+TGG 0.463296 1.4:-55650729 None:intergenic
TTGTTGCAAAGTTGTCTAGT+TGG 0.463573 1.4:+55649576 MS.gene94803:CDS
TAGACGACCACCATCAACTT+TGG 0.465253 1.4:-55650198 None:intergenic
TAGTTGTAGCGCAAAGTTGT+TGG 0.465803 1.4:+55648747 MS.gene94803:CDS
CTTTCTCTTCTCCATCGAAA+AGG 0.467284 1.4:-55650353 None:intergenic
AGAAGAAATCTTCATTCAGA+TGG 0.469575 1.4:+55649319 MS.gene94803:CDS
AACTAGTACTGTTCATGAAT+GGG 0.472834 1.4:+55648483 MS.gene94803:CDS
AAATATGCTGCCATTCATAC+AGG 0.475969 1.4:+55650149 MS.gene94803:CDS
TTAGAGAAATCAATAGATAC+AGG 0.477570 1.4:+55648958 MS.gene94803:CDS
CGACATCATACCAAAGTTGA+TGG 0.478069 1.4:+55650188 MS.gene94803:CDS
ATTTGGAACATCGGGTACAT+TGG 0.482649 1.4:-55650576 None:intergenic
TAAGAAATAGTGCTAGTGAT+TGG 0.489143 1.4:+55648362 MS.gene94803:CDS
ATAATTGTTACCTGTATGAA+TGG 0.491038 1.4:-55650159 None:intergenic
AAATCCAAAGGTCGGCCAAA+AGG 0.496241 1.4:+55650635 MS.gene94803:CDS
CCAAAAGGTTCAAGGCCAAA+AGG 0.499841 1.4:+55650650 MS.gene94803:CDS
GAGTCTGAAGATAATCCATC+AGG 0.500480 1.4:+55648625 MS.gene94803:CDS
ATATTATTGTTATCAAAAGC+AGG 0.503849 1.4:+55648901 MS.gene94803:CDS
ATGCCACTTGGAATGTGGAT+TGG 0.511770 1.4:+55649243 MS.gene94803:CDS
ACCATCATTATTTGGAACAT+CGG 0.512682 1.4:-55650585 None:intergenic
TGATCCGTAAGGATTGTTTG+TGG 0.512910 1.4:-55649482 None:intergenic
GAATTTGTTTGTCATCGAGC+TGG 0.517742 1.4:+55648661 MS.gene94803:CDS
CCAGGCTGAGGTTCTTGATG+TGG 0.518896 1.4:-55648460 None:intergenic
TGGATTGGGGTTGATAATCA+TGG 0.518964 1.4:+55649258 MS.gene94803:CDS
CCCGATGTTCCAAATAATGA+TGG 0.520874 1.4:+55650584 MS.gene94803:CDS
ATTTGGCAATTCCTTTGCAA+TGG 0.524413 1.4:-55649525 None:intergenic
CATCTAATAACTCATGGTTG+TGG 0.528510 1.4:-55648819 None:intergenic
TAGACAATTCAATCTCATGT+TGG 0.528559 1.4:-55650124 None:intergenic
CTTTAAACAGGAGTTTCATA+GGG 0.528837 1.4:+55649631 MS.gene94803:CDS
AAGGTCGGCCAAAAGGTTCA+AGG 0.530766 1.4:+55650642 MS.gene94803:CDS
ACTCTCATTATGAGACTCAC+AGG 0.531933 1.4:-55648928 None:intergenic
TAACTTACCATTTCTGGAGA+AGG 0.534997 1.4:+55648981 MS.gene94803:CDS
TTCCAAGTGGCATATCATAA+CGG 0.535191 1.4:-55649233 None:intergenic
AATAGTCCTTCAAATAAGCT+AGG 0.536211 1.4:-55649772 None:intergenic
ATGGTGGTCGTCTAGTAAGC+TGG 0.537867 1.4:+55650207 MS.gene94803:CDS
CCACATCAAGAACCTCAGCC+TGG 0.539330 1.4:+55648460 MS.gene94803:CDS
CCTTATCATCTAATAACTCA+TGG 0.545462 1.4:-55648825 None:intergenic
ATATCCACAAACAATCCTTA+CGG 0.547845 1.4:+55649478 MS.gene94803:CDS
AACCGTTATGATATGCCACT+TGG 0.555362 1.4:+55649231 MS.gene94803:CDS
CGTTGTCACGTTCCAAATTG+CGG 0.556435 1.4:+55650701 MS.gene94803:CDS
GAAGAAATCTTCATTCAGAT+GGG 0.559436 1.4:+55649320 MS.gene94803:CDS
ATTGGGATGTTACGATAAGC+GGG 0.561005 1.4:-55648862 None:intergenic
TAGACATCAAGCAGGAGAAG+AGG 0.565504 1.4:+55650001 MS.gene94803:CDS
GTCAAAATTAGACATCAAGC+AGG 0.568777 1.4:+55649993 MS.gene94803:CDS
TGCACAATTTGGTCTAAGCA+AGG 0.581324 1.4:+55649706 MS.gene94803:CDS
TTCATCATCTTCATATGTAG+AGG 0.581729 1.4:-55648410 None:intergenic
TTGTTTCAAAATCCAAAGGT+CGG 0.583293 1.4:+55650627 MS.gene94803:CDS
CCTGTTGTTTCAAAATCCAA+AGG 0.583885 1.4:+55650623 MS.gene94803:CDS
AATTGGGATGTTACGATAAG+CGG 0.587373 1.4:-55648863 None:intergenic
ATCATTAAAGACAAAAGAGA+GGG 0.596933 1.4:+55650466 MS.gene94803:CDS
GTGCAAGATCTTGATCCGTA+AGG 0.602894 1.4:-55649493 None:intergenic
ATGATATGCCACTTGGAATG+TGG 0.611489 1.4:+55649238 MS.gene94803:CDS
ACAGTACTAGTTCCAGGCTG+AGG 0.619979 1.4:-55648472 None:intergenic
TGAGTTATTAGATGATAAGG+AGG 0.622448 1.4:+55648828 MS.gene94803:CDS
AGGCTTTGAAGGAAAATGGG+TGG 0.631084 1.4:+55648777 MS.gene94803:CDS
AAAGGTTCAAGGCCAAAAGG+TGG 0.631199 1.4:+55650653 MS.gene94803:CDS
AATCATTAAAGACAAAAGAG+AGG 0.632966 1.4:+55650465 MS.gene94803:CDS
TCAATATATCTCGAACCCAA+CGG 0.634921 1.4:-55649608 None:intergenic
TACTTATTAGGAGATTGAGA+AGG 0.635742 1.4:-55650782 None:intergenic
GCCACTTGGAATGTGGATTG+GGG 0.646236 1.4:+55649245 MS.gene94803:CDS
ACCCCAATCCACATTCCAAG+TGG 0.654914 1.4:-55649246 None:intergenic
ACTTACAGAAGCCATTGCAA+AGG 0.657210 1.4:+55649514 MS.gene94803:CDS
GCGGAACCAATCATGACTCG+CGG 0.676119 1.4:+55650723 MS.gene94803:CDS
CTCTCATTATGAGACTCACA+GGG 0.677592 1.4:-55648927 None:intergenic
CATCATACCAAAGTTGATGG+TGG 0.683172 1.4:+55650191 MS.gene94803:CDS
TGTCACGTTCCAAATTGCGG+CGG 0.703136 1.4:+55650704 MS.gene94803:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACATTGTAAAATTCAT+AGG - chr1.4:55648548-55648567 None:intergenic 15.0%
!! TAATTAATATATTTGTGAGT+AGG + chr1.4:55649959-55649978 MS.gene94803:intron 15.0%
!!! TCAAGATAATTTGATTTATT+TGG + chr1.4:55650550-55650569 MS.gene94803:CDS 15.0%
!!! TCAATATTTTTCTTTTTGTT+TGG - chr1.4:55650755-55650774 None:intergenic 15.0%
!!! TTATTTTAGTAACTTGTTAT+AGG + chr1.4:55649904-55649923 MS.gene94803:intron 15.0%
!! AATCATCTATAGATTCTAAA+TGG - chr1.4:55649661-55649680 None:intergenic 20.0%
!! ATATTATTGTTATCAAAAGC+AGG + chr1.4:55648901-55648920 MS.gene94803:CDS 20.0%
!! TTAAAAATTTGTCCTTCAAA+AGG - chr1.4:55648511-55648530 None:intergenic 20.0%
!!! TAATCATTTTTTTGTTAGAC+AGG - chr1.4:55649387-55649406 None:intergenic 20.0%
! AAGTGAAAAATCAAAGGAAA+CGG + chr1.4:55648710-55648729 MS.gene94803:CDS 25.0%
! AATCATTAAAGACAAAAGAG+AGG + chr1.4:55650465-55650484 MS.gene94803:CDS 25.0%
! AATGTATTTGCACGAAAAAA+TGG + chr1.4:55648559-55648578 MS.gene94803:CDS 25.0%
! ACAAACTAGAGCATATTATT+TGG + chr1.4:55649136-55649155 MS.gene94803:CDS 25.0%
! ACATCATAACCATCATTATT+TGG - chr1.4:55650596-55650615 None:intergenic 25.0%
! AGTACCATAATTCTCTAATT+AGG + chr1.4:55650039-55650058 MS.gene94803:CDS 25.0%
! ATAATTGTTACCTGTATGAA+TGG - chr1.4:55650162-55650181 None:intergenic 25.0%
! ATCATTAAAGACAAAAGAGA+GGG + chr1.4:55650466-55650485 MS.gene94803:CDS 25.0%
! ATGTAAAAGTCTGAAAGATA+TGG + chr1.4:55649074-55649093 MS.gene94803:CDS 25.0%
! CAAACTAGAGCATATTATTT+GGG + chr1.4:55649137-55649156 MS.gene94803:CDS 25.0%
! CATATAGTCAAATGCAATAA+TGG + chr1.4:55650398-55650417 MS.gene94803:CDS 25.0%
! TAATATATTTGTGAGTAGGT+TGG + chr1.4:55649963-55649982 MS.gene94803:intron 25.0%
! TTAGAGAAATCAATAGATAC+AGG + chr1.4:55648958-55648977 MS.gene94803:CDS 25.0%
! TTGATGAAGTGAAAAATCAA+AGG + chr1.4:55648704-55648723 MS.gene94803:CDS 25.0%
! TTGTCCTAATTAGAGAATTA+TGG - chr1.4:55650046-55650065 None:intergenic 25.0%
!! AATTTTATTCAATCACACAG+TGG + chr1.4:55649012-55649031 MS.gene94803:CDS 25.0%
!! AGTTTTCTAACTTTTGTTGA+AGG + chr1.4:55649452-55649471 MS.gene94803:CDS 25.0%
!! CAAAATGCATGTTTTGTATT+TGG - chr1.4:55649545-55649564 None:intergenic 25.0%
!! CATGGAAATTCAATTTTCTT+TGG + chr1.4:55649276-55649295 MS.gene94803:CDS 25.0%
!!! GAAAAAATGGATTTTCGATT+AGG + chr1.4:55648572-55648591 MS.gene94803:CDS 25.0%
!!! GAAAAGGAAGATATTTTGAT+GGG - chr1.4:55650340-55650359 None:intergenic 25.0%
!!! GAGATATATTGACTTTAAAC+AGG + chr1.4:55649619-55649638 MS.gene94803:CDS 25.0%
!!! TGTAAAGAATTTGAGTTTTC+TGG + chr1.4:55650260-55650279 MS.gene94803:CDS 25.0%
!!! TTTGACTGATTTTGTAAATC+AGG + chr1.4:55649874-55649893 MS.gene94803:CDS 25.0%
AACTAGTACTGTTCATGAAT+GGG + chr1.4:55648483-55648502 MS.gene94803:CDS 30.0%
AATAGTCCTTCAAATAAGCT+AGG - chr1.4:55649775-55649794 None:intergenic 30.0%
ACTTTAAACAGGAGTTTCAT+AGG + chr1.4:55649630-55649649 MS.gene94803:CDS 30.0%
AGAAGAAATCTTCATTCAGA+TGG + chr1.4:55649319-55649338 MS.gene94803:CDS 30.0%
ATATCCACAAACAATCCTTA+CGG + chr1.4:55649478-55649497 MS.gene94803:CDS 30.0%
CCATGAGTTATTAGATGATA+AGG + chr1.4:55648825-55648844 MS.gene94803:CDS 30.0%
CCTTATCATCTAATAACTCA+TGG - chr1.4:55648828-55648847 None:intergenic 30.0%
CTTTAAACAGGAGTTTCATA+GGG + chr1.4:55649631-55649650 MS.gene94803:CDS 30.0%
GAAGAAATCTTCATTCAGAT+GGG + chr1.4:55649320-55649339 MS.gene94803:CDS 30.0%
GAATTAATGGTTGCACAATT+TGG + chr1.4:55649695-55649714 MS.gene94803:CDS 30.0%
TAAGAAATAGTGCTAGTGAT+TGG + chr1.4:55648362-55648381 MS.gene94803:CDS 30.0%
TACTTATTAGGAGATTGAGA+AGG - chr1.4:55650785-55650804 None:intergenic 30.0%
TAGACAATTCAATCTCATGT+TGG - chr1.4:55650127-55650146 None:intergenic 30.0%
TGAGTTATTAGATGATAAGG+AGG + chr1.4:55648828-55648847 MS.gene94803:CDS 30.0%
TTCATCATCTTCATATGTAG+AGG - chr1.4:55648413-55648432 None:intergenic 30.0%
TTGTTTCAAAATCCAAAGGT+CGG + chr1.4:55650627-55650646 MS.gene94803:CDS 30.0%
! ACCATCATTATTTGGAACAT+CGG - chr1.4:55650588-55650607 None:intergenic 30.0%
! AGATGATTTTGAACGAGAAT+GGG + chr1.4:55649673-55649692 MS.gene94803:CDS 30.0%
! ATTCGAGCATATGAATCTTT+TGG + chr1.4:55649174-55649193 MS.gene94803:CDS 30.0%
! CAAAACATGCATTTTGCATA+TGG + chr1.4:55649549-55649568 MS.gene94803:CDS 30.0%
! CAAAATATCTTCCTTTTCGA+TGG + chr1.4:55650342-55650361 MS.gene94803:CDS 30.0%
! GTTATAGGTACGTTGTATTT+TGG + chr1.4:55649919-55649938 MS.gene94803:intron 30.0%
! TAGATGATTTTGAACGAGAA+TGG + chr1.4:55649672-55649691 MS.gene94803:CDS 30.0%
! TCTCTTTTATAAACTCCTGA+TGG - chr1.4:55648643-55648662 None:intergenic 30.0%
! TGACTATATGACTGCATTTT+GGG - chr1.4:55650388-55650407 None:intergenic 30.0%
! TTGACTATATGACTGCATTT+TGG - chr1.4:55650389-55650408 None:intergenic 30.0%
!! ATACGATTTTGATCGTCAAT+TGG - chr1.4:55648883-55648902 None:intergenic 30.0%
!! ATCAAATTATCTTGACTTGC+AGG - chr1.4:55650545-55650564 None:intergenic 30.0%
!! CGAAAAGGAAGATATTTTGA+TGG - chr1.4:55650341-55650360 None:intergenic 30.0%
!! TAAAGGCTTTGAAGGAAAAT+GGG + chr1.4:55648774-55648793 MS.gene94803:CDS 30.0%
!! TACGATTTTGATCGTCAATT+GGG - chr1.4:55648882-55648901 None:intergenic 30.0%
!!! ATATGAATCTTTTGGTGATG+TGG + chr1.4:55649182-55649201 MS.gene94803:CDS 30.0%
!!! TGAAGGACTATTTTTTTGCT+GGG + chr1.4:55649783-55649802 MS.gene94803:CDS 30.0%
!!! TTGAAGGACTATTTTTTTGC+TGG + chr1.4:55649782-55649801 MS.gene94803:CDS 30.0%
AAATATGCTGCCATTCATAC+AGG + chr1.4:55650149-55650168 MS.gene94803:CDS 35.0%
AAATTCCTCCGACAGATAAA+AGG + chr1.4:55650515-55650534 MS.gene94803:CDS 35.0%
AATTGGGATGTTACGATAAG+CGG - chr1.4:55648866-55648885 None:intergenic 35.0%
ATTTGGCAATTCCTTTGCAA+TGG - chr1.4:55649528-55649547 None:intergenic 35.0%
CATCTAATAACTCATGGTTG+TGG - chr1.4:55648822-55648841 None:intergenic 35.0%
CTAATATCCTTCTCCAGAAA+TGG - chr1.4:55648991-55649010 None:intergenic 35.0%
GAACTAGTACTGTTCATGAA+TGG + chr1.4:55648482-55648501 MS.gene94803:CDS 35.0%
GAGCATATTATTTGGGCATT+TGG + chr1.4:55649144-55649163 MS.gene94803:CDS 35.0%
GTCAAAATTAGACATCAAGC+AGG + chr1.4:55649993-55650012 MS.gene94803:CDS 35.0%
TACAGGTAACTTACCATTTC+TGG + chr1.4:55648975-55648994 MS.gene94803:CDS 35.0%
TCAATATATCTCGAACCCAA+CGG - chr1.4:55649611-55649630 None:intergenic 35.0%
TCAGTCTCTAATTCGATGTT+TGG + chr1.4:55650436-55650455 MS.gene94803:CDS 35.0%
TGAACGAGAATGGGAATTAA+TGG + chr1.4:55649682-55649701 MS.gene94803:CDS 35.0%
TGGATTAACTCAAACGCATA+TGG - chr1.4:55650107-55650126 None:intergenic 35.0%
TTCCAAGTGGCATATCATAA+CGG - chr1.4:55649236-55649255 None:intergenic 35.0%
TTGTTGCAAAGTTGTCTAGT+TGG + chr1.4:55649576-55649595 MS.gene94803:CDS 35.0%
! CCATCATTATTTGGAACATC+GGG - chr1.4:55650587-55650606 None:intergenic 35.0%
! CTACTCTCATCGTCAATTTT+GGG + chr1.4:55649748-55649767 MS.gene94803:CDS 35.0%
! TAACTTACCATTTCTGGAGA+AGG + chr1.4:55648981-55649000 MS.gene94803:CDS 35.0%
! TACTCTCATCGTCAATTTTG+GGG + chr1.4:55649749-55649768 MS.gene94803:CDS 35.0%
! TAGGACAACTTTTCCTATTG+AGG + chr1.4:55650058-55650077 MS.gene94803:CDS 35.0%
! TCTACTCTCATCGTCAATTT+TGG + chr1.4:55649747-55649766 MS.gene94803:CDS 35.0%
! TTCATTCAGATGGGCTTTAA+AGG + chr1.4:55649329-55649348 MS.gene94803:CDS 35.0%
! TTGGTTTCTAAAGGCTTTGA+AGG + chr1.4:55648766-55648785 MS.gene94803:CDS 35.0%
! TTTTACAAGTAGCACTCGAA+TGG - chr1.4:55650303-55650322 None:intergenic 35.0%
!! CCTGTTGTTTCAAAATCCAA+AGG + chr1.4:55650623-55650642 MS.gene94803:CDS 35.0%
!! CTAAAGGCTTTGAAGGAAAA+TGG + chr1.4:55648773-55648792 MS.gene94803:CDS 35.0%
!! GCAAAGTTGTTGGTTTCTAA+AGG + chr1.4:55648757-55648776 MS.gene94803:CDS 35.0%
!!! AGTTGGTTTTCTTTTCCGTT+GGG + chr1.4:55649593-55649612 MS.gene94803:CDS 35.0%
!!! CCTTTGGATTTTGAAACAAC+AGG - chr1.4:55650626-55650645 None:intergenic 35.0%
!!! TAGTTGGTTTTCTTTTCCGT+TGG + chr1.4:55649592-55649611 MS.gene94803:CDS 35.0%
AACCGTTATGATATGCCACT+TGG + chr1.4:55649231-55649250 MS.gene94803:CDS 40.0%
ACTCTCATTATGAGACTCAC+AGG - chr1.4:55648931-55648950 None:intergenic 40.0%
ACTTACAGAAGCCATTGCAA+AGG + chr1.4:55649514-55649533 MS.gene94803:CDS 40.0%
ATTGGGATGTTACGATAAGC+GGG - chr1.4:55648865-55648884 None:intergenic 40.0%
CCCGATGTTCCAAATAATGA+TGG + chr1.4:55650584-55650603 MS.gene94803:CDS 40.0%
CGACATCATACCAAAGTTGA+TGG + chr1.4:55650188-55650207 MS.gene94803:CDS 40.0%
CTCTCATTATGAGACTCACA+GGG - chr1.4:55648930-55648949 None:intergenic 40.0%
CTTTCTCTTCTCCATCGAAA+AGG - chr1.4:55650356-55650375 None:intergenic 40.0%
GAGTCTGAAGATAATCCATC+AGG + chr1.4:55648625-55648644 MS.gene94803:CDS 40.0%
TAGTTGTAGCGCAAAGTTGT+TGG + chr1.4:55648747-55648766 MS.gene94803:CDS 40.0%
TCATGAACAGTACTAGTTCC+AGG - chr1.4:55648481-55648500 None:intergenic 40.0%
TGATCCGTAAGGATTGTTTG+TGG - chr1.4:55649485-55649504 None:intergenic 40.0%
TGCACAATTTGGTCTAAGCA+AGG + chr1.4:55649706-55649725 MS.gene94803:CDS 40.0%
TTTGCAGCATGTTCCTCAAT+AGG - chr1.4:55650074-55650093 None:intergenic 40.0%
! ATGATATGCCACTTGGAATG+TGG + chr1.4:55649238-55649257 MS.gene94803:CDS 40.0%
! ATTTGGAACATCGGGTACAT+TGG - chr1.4:55650579-55650598 None:intergenic 40.0%
! GAATTTGTTTGTCATCGAGC+TGG + chr1.4:55648661-55648680 MS.gene94803:CDS 40.0%
! TTTGGAACATCGGGTACATT+GGG - chr1.4:55650578-55650597 None:intergenic 40.0%
!! CATCATACCAAAGTTGATGG+TGG + chr1.4:55650191-55650210 MS.gene94803:CDS 40.0%
!! CATGAATGGGTTCCTTTTGA+AGG + chr1.4:55648496-55648515 MS.gene94803:CDS 40.0%
!! TGGATTGGGGTTGATAATCA+TGG + chr1.4:55649258-55649277 MS.gene94803:CDS 40.0%
AAAGGTTCAAGGCCAAAAGG+TGG + chr1.4:55650653-55650672 MS.gene94803:CDS 45.0%
AAATCCAAAGGTCGGCCAAA+AGG + chr1.4:55650635-55650654 MS.gene94803:CDS 45.0%
ACAATTCCGCGAGTCATGAT+TGG - chr1.4:55650732-55650751 None:intergenic 45.0%
CCAAAAGGTTCAAGGCCAAA+AGG + chr1.4:55650650-55650669 MS.gene94803:CDS 45.0%
CGTTGTCACGTTCCAAATTG+CGG + chr1.4:55650701-55650720 MS.gene94803:CDS 45.0%
GTGCAAGATCTTGATCCGTA+AGG - chr1.4:55649496-55649515 None:intergenic 45.0%
TAGACATCAAGCAGGAGAAG+AGG + chr1.4:55650001-55650020 MS.gene94803:CDS 45.0%
TAGACGACCACCATCAACTT+TGG - chr1.4:55650201-55650220 None:intergenic 45.0%
TTGGGGCCTAGCTTATTTGA+AGG + chr1.4:55649766-55649785 MS.gene94803:CDS 45.0%
! ATGCCACTTGGAATGTGGAT+TGG + chr1.4:55649243-55649262 MS.gene94803:CDS 45.0%
! CAGGCATGCCTTTTATCTGT+CGG - chr1.4:55650526-55650545 None:intergenic 45.0%
! TGCCACTTGGAATGTGGATT+GGG + chr1.4:55649244-55649263 MS.gene94803:CDS 45.0%
!! AGGCTTTGAAGGAAAATGGG+TGG + chr1.4:55648777-55648796 MS.gene94803:CDS 45.0%
!!! CCTTTTGGCCTTGAACCTTT+TGG - chr1.4:55650653-55650672 None:intergenic 45.0%
AAGGTCGGCCAAAAGGTTCA+AGG + chr1.4:55650642-55650661 MS.gene94803:CDS 50.0%
ACAGTACTAGTTCCAGGCTG+AGG - chr1.4:55648475-55648494 None:intergenic 50.0%
ACCCCAATCCACATTCCAAG+TGG - chr1.4:55649249-55649268 None:intergenic 50.0%
ATGGTGGTCGTCTAGTAAGC+TGG + chr1.4:55650207-55650226 MS.gene94803:CDS 50.0%
GTGACAACGTCGAAGCTTCT+TGG - chr1.4:55650690-55650709 None:intergenic 50.0%
TGTCACGTTCCAAATTGCGG+CGG + chr1.4:55650704-55650723 MS.gene94803:CDS 50.0%
TTTGCTGGGATGACGACAAC+TGG + chr1.4:55649797-55649816 MS.gene94803:CDS 50.0%
! GCAGCTTCAACTCCACCTTT+TGG - chr1.4:55650668-55650687 None:intergenic 50.0%
! GCATGCCTTTTATCTGTCGG+AGG - chr1.4:55650523-55650542 None:intergenic 50.0%
! GCCACTTGGAATGTGGATTG+GGG + chr1.4:55649245-55649264 MS.gene94803:CDS 50.0%
! TGAACCTTTTGGCCGACCTT+TGG - chr1.4:55650642-55650661 None:intergenic 50.0%
! TGATTGGTTCCGCCGCAATT+TGG - chr1.4:55650716-55650735 None:intergenic 50.0%
CCACATCAAGAACCTCAGCC+TGG + chr1.4:55648460-55648479 MS.gene94803:CDS 55.0%
CCAGGCTGAGGTTCTTGATG+TGG - chr1.4:55648463-55648482 None:intergenic 55.0%
GCGGAACCAATCATGACTCG+CGG + chr1.4:55650723-55650742 MS.gene94803:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 55648349 55650805 55648349 ID=MS.gene94803
chr1.4 mRNA 55648349 55650805 55648349 ID=MS.gene94803.t1;Parent=MS.gene94803
chr1.4 exon 55648349 55649350 55648349 ID=MS.gene94803.t1.exon1;Parent=MS.gene94803.t1
chr1.4 CDS 55648349 55649350 55648349 ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1
chr1.4 exon 55649452 55649895 55649452 ID=MS.gene94803.t1.exon2;Parent=MS.gene94803.t1
chr1.4 CDS 55649452 55649895 55649452 ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1
chr1.4 exon 55649981 55650805 55649981 ID=MS.gene94803.t1.exon3;Parent=MS.gene94803.t1
chr1.4 CDS 55649981 55650805 55649981 ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1
Gene Sequence

>MS.gene94803

ATGACATCTGAAGTAAGAAATAGTGCTAGTGATTGGCACTTAGAGCTTCTTAAAGATTACACCTCTACATATGAAGATGATGAATATAGAAATTCATTTAGCTTTCAAGAGCCACATCAAGAACCTCAGCCTGGAACTAGTACTGTTCATGAATGGGTTCCTTTTGAAGGACAAATTTTTAACACTGATGATGATGCCTATGAATTTTACAATGTATTTGCACGAAAAAATGGATTTTCGATTAGGCGTGATCGCATTTGCAAATCTCATAAAAATGAGTCTGAAGATAATCCATCAGGAGTTTATAAAAGAGAATTTGTTTGTCATCGAGCTGGTATTGTTAAGCAACGCAAAGTTGATGAAGTGAAAAATCAAAGGAAACGGAAATCTTCGCGATGTAGTTGTAGCGCAAAGTTGTTGGTTTCTAAAGGCTTTGAAGGAAAATGGGTGGTTAAATATTTTAATAATAACCACAACCATGAGTTATTAGATGATAAGGAGGTTCAATTTCTTCCCGCTTATCGTAACATCCCAATTGACGATCAAAATCGTATATTATTGTTATCAAAAGCAGGTTGCCCTGTGAGTCTCATAATGAGAGTGCTTGAGTTAGAGAAATCAATAGATACAGGTAACTTACCATTTCTGGAGAAGGATATTAGAAATTTTATTCAATCACACAGTGGTATTGATAAAGAAAATGATGCTTCAGATGTTCTCAAATTATGTAAAAGTCTGAAAGATATGGATAGTGCATTTGAATATGATTTCACAATAGATGAAAGTAACAAACTAGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAATCTTTTGGTGATGTGGTTGTTTTCGATACTACATATCGAATAAACCGTTATGATATGCCACTTGGAATGTGGATTGGGGTTGATAATCATGGAAATTCAATTTTCTTTGGCTGTGTTCTATTGCGAAATGAGAAGAAATCTTCATTCAGATGGGCTTTAAAGGTAAAATTATATTTACATGATAATTTTGTATCTCCTGTCTAACAAAAAAATGATTATTATGTTTATAATAACATTAAAAAAATGATTATTTTGTATTTCAGAGTTTTCTAACTTTTGTTGAAGGAAAATATCCACAAACAATCCTTACGGATCAAGATCTTGCACTTACAGAAGCCATTGCAAAGGAATTGCCAAATACAAAACATGCATTTTGCATATGGCATATTGTTGCAAAGTTGTCTAGTTGGTTTTCTTTTCCGTTGGGTTCGAGATATATTGACTTTAAACAGGAGTTTCATAGGGTGTACCATTTAGAATCTATAGATGATTTTGAACGAGAATGGGAATTAATGGTTGCACAATTTGGTCTAAGCAAGGACGATCATATTGACTTGCTCTACTCTCATCGTCAATTTTGGGGCCTAGCTTATTTGAAGGACTATTTTTTTGCTGGGATGACGACAACTGGACGTTCTGAATCAATCAACTCGTATGTAAAAAGATTCTTAGATGTGAAAACAAGTTTGACTGATTTTGTAAATCAGGTATGAACTTATTTTAGTAACTTGTTATAGGTACGTTGTATTTTGGAAATTGAAACTTACATGTAATTAATATATTTGTGAGTAGGTTGGTGTTGCTGTCAAAATTAGACATCAAGCAGGAGAAGAGGCAAGAATGCGTCATAAGTACCATAATTCTCTAATTAGGACAACTTTTCCTATTGAGGAACATGCTGCAAAAATACTCACTCCATATGCGTTTGAGTTAATCCAACATGAGATTGAATTGTCTACAAAATATGCTGCCATTCATACAGGTAACAATTATATCGTGCGACATCATACCAAAGTTGATGGTGGTCGTCTAGTAAGCTGGATAGAAGAAGAAGAATCAATTTCTTGTTCTTGTAAAGAATTTGAGTTTTCTGGAATATTGTGCAGACATGCCATTCGAGTGCTACTTGTAAAAAATTATTTTCACTTCCCATCAAAATATCTTCCTTTTCGATGGAGAAGAGAAAGTTCATTGATCCCAAAATGCAGTCATATAGTCAAATGCAATAATGGTTCTCATGTTGAGTTTCAGTCTCTAATTCGATGTTTGGAAGTTGAATCATTAAAGACAAAAGAGAGGGAACAAGTTGCTACTGCAGAGTTAGAGAAATTCCTCCGACAGATAAAAGGCATGCCTGCAAGTCAAGATAATTTGATTTATTTGGAACCCAATGTACCCGATGTTCCAAATAATGATGGTTATGATGTTGAAAATCCTGTTGTTTCAAAATCCAAAGGTCGGCCAAAAGGTTCAAGGCCAAAAGGTGGAGTTGAAGCTGCCAAGAAGCTTCGACGTTGTCACGTTCCAAATTGCGGCGGAACCAATCATGACTCGCGGAATTGTCCAAACAAAAAGAAAAATATTGAAGTATTGCCTTCTCAATCTCCTAATAAGTAA
Protein sequence

>MS.gene94803.t1

MTSEVRNSASDWHLELLKDYTSTYEDDEYRNSFSFQEPHQEPQPGTSTVHEWVPFEGQIFNTDDDAYEFYNVFARKNGFSIRRDRICKSHKNESEDNPSGVYKREFVCHRAGIVKQRKVDEVKNQRKRKSSRCSCSAKLLVSKGFEGKWVVKYFNNNHNHELLDDKEVQFLPAYRNIPIDDQNRILLLSKAGCPVSLIMRVLELEKSIDTGNLPFLEKDIRNFIQSHSGIDKENDASDVLKLCKSLKDMDSAFEYDFTIDESNKLEHIIWAFGDSIRAYESFGDVVVFDTTYRINRYDMPLGMWIGVDNHGNSIFFGCVLLRNEKKSSFRWALKSFLTFVEGKYPQTILTDQDLALTEAIAKELPNTKHAFCIWHIVAKLSSWFSFPLGSRYIDFKQEFHRVYHLESIDDFEREWELMVAQFGLSKDDHIDLLYSHRQFWGLAYLKDYFFAGMTTTGRSESINSYVKRFLDVKTSLTDFVNQVGVAVKIRHQAGEEARMRHKYHNSLIRTTFPIEEHAAKILTPYAFELIQHEIELSTKYAAIHTGNNYIVRHHTKVDGGRLVSWIEEEESISCSCKEFEFSGILCRHAIRVLLVKNYFHFPSKYLPFRWRRESSLIPKCSHIVKCNNGSHVEFQSLIRCLEVESLKTKEREQVATAELEKFLRQIKGMPASQDNLIYLEPNVPDVPNNDGYDVENPVVSKSKGRPKGSRPKGGVEAAKKLRRCHVPNCGGTNHDSRNCPNKKKNIEVLPSQSPNK