AlfalfaGEDB | MS.gene94803

M. sativa cultivar XinJiangDaYe / MS.gene94803

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18 PF04434.20 PF10551.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94803.t1	RHN81411.1	73.2	761	188	5	1	756	1	750	0.00E+00	1112.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94803.t1	Q9SY66	47.6	662	336	4	16	672	10	665	2.8e-177	623.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94803.t1	A0A396JX52	73.2	761	188	5	1	756	1	750	0.0e+00	1112.8

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene94803.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94803.t1	MTR_3g450850	65.986	294	88	3	1	290	1	286	1.22e-126	382
MS.gene94803.t1	MTR_4g035820	42.164	268	138	5	45	306	68	324	1.00e-57	209
MS.gene94803.t1	MTR_4g035820	46.875	96	51	0	439	534	326	421	6.53e-20	95.1
MS.gene94803.t1	MTR_4g071400	70.968	124	33	1	594	717	1	121	2.70e-53	180
MS.gene94803.t1	MTR_3g012160	87.097	93	12	0	199	291	1	93	2.68e-48	165
MS.gene94803.t1	MTR_1g070355	34.510	255	150	8	45	296	69	309	2.77e-31	130
MS.gene94803.t1	MTR_6g051425	29.286	280	185	5	55	329	18	289	1.49e-30	123
MS.gene94803.t1	MTR_5g076070	27.542	236	160	5	57	290	56	282	2.12e-24	104
MS.gene94803.t1	MTR_5g083630	58.571	70	23	1	194	257	7	76	2.69e-19	84.3
MS.gene94803.t1	MTR_6g014355	37.013	154	80	4	133	277	14	159	1.28e-17	83.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94803.t1	AT1G10240	49.206	630	309	4	48	672	42	665	0.0	642
MS.gene94803.t1	AT1G10240	49.206	630	309	4	48	672	42	665	0.0	642
MS.gene94803.t1	AT5G28530	43.407	675	338	11	25	678	28	679	0.0	547
MS.gene94803.t1	AT5G28530	43.407	675	342	11	25	678	28	683	0.0	547
MS.gene94803.t1	AT5G28530	43.407	675	338	11	25	678	28	679	0.0	547
MS.gene94803.t1	AT5G28530	38.797	665	320	12	25	678	28	616	1.34e-148	448
MS.gene94803.t1	AT5G28530	38.797	665	324	12	25	678	28	620	1.71e-148	448
MS.gene94803.t1	AT4G38180	31.076	576	375	9	54	617	73	638	1.79e-84	285
MS.gene94803.t1	AT4G15090	28.716	693	443	16	54	721	51	717	6.45e-82	278
MS.gene94803.t1	AT4G15090	28.716	693	443	16	54	721	51	717	6.45e-82	278

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Find 107 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTTCAAGGCCAAAAGG+TGG	0.631199	1.4:+55650653	MS.gene94803:CDS
AAATACATTGTAAAATTCAT+AGG	0.433492	1.4:-55648545	None:intergenic
AAATATGCTGCCATTCATAC+AGG	0.475969	1.4:+55650149	MS.gene94803:CDS
AAATCCAAAGGTCGGCCAAA+AGG	0.496241	1.4:+55650635	MS.gene94803:CDS
AAATTCCTCCGACAGATAAA+AGG	0.354413	1.4:+55650515	MS.gene94803:CDS
AACCGTTATGATATGCCACT+TGG	0.555362	1.4:+55649231	MS.gene94803:CDS
AACTAGTACTGTTCATGAAT+GGG	0.472834	1.4:+55648483	MS.gene94803:CDS
AAGGTCGGCCAAAAGGTTCA+AGG	0.530766	1.4:+55650642	MS.gene94803:CDS
AATAGTCCTTCAAATAAGCT+AGG	0.536211	1.4:-55649772	None:intergenic
AATCATCTATAGATTCTAAA+TGG	0.332504	1.4:-55649658	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAGTACTGTTCATGAAT+GGG	+	chr1.4:55648483-55648502	MS.gene94803:CDS	30.0%
AATAGTCCTTCAAATAAGCT+AGG	-	chr1.4:55649775-55649794	None:intergenic	30.0%
ACTTTAAACAGGAGTTTCAT+AGG	+	chr1.4:55649630-55649649	MS.gene94803:CDS	30.0%
AGAAGAAATCTTCATTCAGA+TGG	+	chr1.4:55649319-55649338	MS.gene94803:CDS	30.0%
ATATCCACAAACAATCCTTA+CGG	+	chr1.4:55649478-55649497	MS.gene94803:CDS	30.0%
CCATGAGTTATTAGATGATA+AGG	+	chr1.4:55648825-55648844	MS.gene94803:CDS	30.0%
CCTTATCATCTAATAACTCA+TGG	-	chr1.4:55648828-55648847	None:intergenic	30.0%
CTTTAAACAGGAGTTTCATA+GGG	+	chr1.4:55649631-55649650	MS.gene94803:CDS	30.0%
GAAGAAATCTTCATTCAGAT+GGG	+	chr1.4:55649320-55649339	MS.gene94803:CDS	30.0%
GAATTAATGGTTGCACAATT+TGG	+	chr1.4:55649695-55649714	MS.gene94803:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	55648349	55650805	55648349	ID=MS.gene94803
chr1.4	mRNA	55648349	55650805	55648349	ID=MS.gene94803.t1;Parent=MS.gene94803
chr1.4	exon	55648349	55649350	55648349	ID=MS.gene94803.t1.exon1;Parent=MS.gene94803.t1
chr1.4	CDS	55648349	55649350	55648349	ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1
chr1.4	exon	55649452	55649895	55649452	ID=MS.gene94803.t1.exon2;Parent=MS.gene94803.t1
chr1.4	CDS	55649452	55649895	55649452	ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1
chr1.4	exon	55649981	55650805	55649981	ID=MS.gene94803.t1.exon3;Parent=MS.gene94803.t1
chr1.4	CDS	55649981	55650805	55649981	ID=cds.MS.gene94803.t1;Parent=MS.gene94803.t1

Gene Sequence

>MS.gene94803

ATGACATCTGAAGTAAGAAATAGTGCTAGTGATTGGCACTTAGAGCTTCTTAAAGATTACACCTCTACATATGAAGATGATGAATATAGAAATTCATTTAGCTTTCAAGAGCCACATCAAGAACCTCAGCCTGGAACTAGTACTGTTCATGAATGGGTTCCTTTTGAAGGACAAATTTTTAACACTGATGATGATGCCTATGAATTTTACAATGTATTTGCACGAAAAAATGGATTTTCGATTAGGCGTGATCGCATTTGCAAATCTCATAAAAATGAGTCTGAAGATAATCCATCAGGAGTTTATAAAAGAGAATTTGTTTGTCATCGAGCTGGTATTGTTAAGCAACGCAAAGTTGATGAAGTGAAAAATCAAAGGAAACGGAAATCTTCGCGATGTAGTTGTAGCGCAAAGTTGTTGGTTTCTAAAGGCTTTGAAGGAAAATGGGTGGTTAAATATTTTAATAATAACCACAACCATGAGTTATTAGATGATAAGGAGGTTCAATTTCTTCCCGCTTATCGTAACATCCCAATTGACGATCAAAATCGTATATTATTGTTATCAAAAGCAGGTTGCCCTGTGAGTCTCATAATGAGAGTGCTTGAGTTAGAGAAATCAATAGATACAGGTAACTTACCATTTCTGGAGAAGGATATTAGAAATTTTATTCAATCACACAGTGGTATTGATAAAGAAAATGATGCTTCAGATGTTCTCAAATTATGTAAAAGTCTGAAAGATATGGATAGTGCATTTGAATATGATTTCACAATAGATGAAAGTAACAAACTAGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAATCTTTTGGTGATGTGGTTGTTTTCGATACTACATATCGAATAAACCGTTATGATATGCCACTTGGAATGTGGATTGGGGTTGATAATCATGGAAATTCAATTTTCTTTGGCTGTGTTCTATTGCGAAATGAGAAGAAATCTTCATTCAGATGGGCTTTAAAGGTAAAATTATATTTACATGATAATTTTGTATCTCCTGTCTAACAAAAAAATGATTATTATGTTTATAATAACATTAAAAAAATGATTATTTTGTATTTCAGAGTTTTCTAACTTTTGTTGAAGGAAAATATCCACAAACAATCCTTACGGATCAAGATCTTGCACTTACAGAAGCCATTGCAAAGGAATTGCCAAATACAAAACATGCATTTTGCATATGGCATATTGTTGCAAAGTTGTCTAGTTGGTTTTCTTTTCCGTTGGGTTCGAGATATATTGACTTTAAACAGGAGTTTCATAGGGTGTACCATTTAGAATCTATAGATGATTTTGAACGAGAATGGGAATTAATGGTTGCACAATTTGGTCTAAGCAAGGACGATCATATTGACTTGCTCTACTCTCATCGTCAATTTTGGGGCCTAGCTTATTTGAAGGACTATTTTTTTGCTGGGATGACGACAACTGGACGTTCTGAATCAATCAACTCGTATGTAAAAAGATTCTTAGATGTGAAAACAAGTTTGACTGATTTTGTAAATCAGGTATGAACTTATTTTAGTAACTTGTTATAGGTACGTTGTATTTTGGAAATTGAAACTTACATGTAATTAATATATTTGTGAGTAGGTTGGTGTTGCTGTCAAAATTAGACATCAAGCAGGAGAAGAGGCAAGAATGCGTCATAAGTACCATAATTCTCTAATTAGGACAACTTTTCCTATTGAGGAACATGCTGCAAAAATACTCACTCCATATGCGTTTGAGTTAATCCAACATGAGATTGAATTGTCTACAAAATATGCTGCCATTCATACAGGTAACAATTATATCGTGCGACATCATACCAAAGTTGATGGTGGTCGTCTAGTAAGCTGGATAGAAGAAGAAGAATCAATTTCTTGTTCTTGTAAAGAATTTGAGTTTTCTGGAATATTGTGCAGACATGCCATTCGAGTGCTACTTGTAAAAAATTATTTTCACTTCCCATCAAAATATCTTCCTTTTCGATGGAGAAGAGAAAGTTCATTGATCCCAAAATGCAGTCATATAGTCAAATGCAATAATGGTTCTCATGTTGAGTTTCAGTCTCTAATTCGATGTTTGGAAGTTGAATCATTAAAGACAAAAGAGAGGGAACAAGTTGCTACTGCAGAGTTAGAGAAATTCCTCCGACAGATAAAAGGCATGCCTGCAAGTCAAGATAATTTGATTTATTTGGAACCCAATGTACCCGATGTTCCAAATAATGATGGTTATGATGTTGAAAATCCTGTTGTTTCAAAATCCAAAGGTCGGCCAAAAGGTTCAAGGCCAAAAGGTGGAGTTGAAGCTGCCAAGAAGCTTCGACGTTGTCACGTTCCAAATTGCGGCGGAACCAATCATGACTCGCGGAATTGTCCAAACAAAAAGAAAAATATTGAAGTATTGCCTTCTCAATCTCCTAATAAGTAA

Protein sequence

>MS.gene94803.t1

MTSEVRNSASDWHLELLKDYTSTYEDDEYRNSFSFQEPHQEPQPGTSTVHEWVPFEGQIFNTDDDAYEFYNVFARKNGFSIRRDRICKSHKNESEDNPSGVYKREFVCHRAGIVKQRKVDEVKNQRKRKSSRCSCSAKLLVSKGFEGKWVVKYFNNNHNHELLDDKEVQFLPAYRNIPIDDQNRILLLSKAGCPVSLIMRVLELEKSIDTGNLPFLEKDIRNFIQSHSGIDKENDASDVLKLCKSLKDMDSAFEYDFTIDESNKLEHIIWAFGDSIRAYESFGDVVVFDTTYRINRYDMPLGMWIGVDNHGNSIFFGCVLLRNEKKSSFRWALKSFLTFVEGKYPQTILTDQDLALTEAIAKELPNTKHAFCIWHIVAKLSSWFSFPLGSRYIDFKQEFHRVYHLESIDDFEREWELMVAQFGLSKDDHIDLLYSHRQFWGLAYLKDYFFAGMTTTGRSESINSYVKRFLDVKTSLTDFVNQVGVAVKIRHQAGEEARMRHKYHNSLIRTTFPIEEHAAKILTPYAFELIQHEIELSTKYAAIHTGNNYIVRHHTKVDGGRLVSWIEEEESISCSCKEFEFSGILCRHAIRVLLVKNYFHFPSKYLPFRWRRESSLIPKCSHIVKCNNGSHVEFQSLIRCLEVESLKTKEREQVATAELEKFLRQIKGMPASQDNLIYLEPNVPDVPNNDGYDVENPVVSKSKGRPKGSRPKGGVEAAKKLRRCHVPNCGGTNHDSRNCPNKKKNIEVLPSQSPNK