AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94865

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94865.t1 MTR_6g053200 83.286 353 46 2 1 353 197 536 0.0 558
MS.gene94865.t1 MTR_2g024380 40.000 365 156 3 22 353 136 470 4.88e-76 242
MS.gene94865.t1 MTR_2g024350 47.137 227 120 0 127 353 1 227 4.99e-69 216
MS.gene94865.t1 MTR_8g067650 37.576 330 152 7 38 352 229 519 4.49e-62 207
MS.gene94865.t1 MTR_8g067635 37.067 375 151 7 15 338 181 521 4.87e-61 204
MS.gene94865.t1 MTR_8g069935 49.490 196 84 1 38 218 220 415 3.41e-53 182
MS.gene94865.t1 MTR_7g104980 50.754 199 97 1 155 353 18 215 3.83e-53 175
MS.gene94865.t1 MTR_1g099600 48.980 98 48 2 112 209 164 259 1.71e-25 104
MS.gene94865.t1 MTR_7g105000 39.264 163 77 5 24 171 201 356 1.04e-22 97.8
MS.gene94865.t1 MTR_8g028565 45.361 97 51 1 111 207 134 228 1.57e-21 94.4
MS.gene94865.t1 MTR_7g079040 41.818 110 56 1 106 207 118 227 3.91e-21 93.2
MS.gene94865.t1 MTR_7g109600 45.977 87 47 0 127 213 46 132 4.95e-21 91.7
MS.gene94865.t1 MTR_8g098945 42.308 104 52 2 135 233 130 230 7.86e-18 82.8
MS.gene94865.t1 MTR_2g032030 46.753 77 40 1 135 211 268 343 9.07e-18 84.3
MS.gene94865.t1 MTR_2g032030 46.753 77 40 1 135 211 268 343 2.27e-17 83.6
MS.gene94865.t1 MTR_7g062220 44.872 78 42 1 114 191 104 180 1.80e-16 79.3
MS.gene94865.t1 MTR_5g016610 41.414 99 55 1 110 205 172 270 3.46e-16 78.2
MS.gene94865.t1 MTR_4g082580 40.860 93 50 2 132 220 276 367 6.78e-16 78.6
MS.gene94865.t1 MTR_2g016770 48.485 66 34 0 129 194 22 87 1.08e-15 75.5
MS.gene94865.t1 MTR_2g016770 48.485 66 34 0 129 194 30 95 1.26e-15 75.5
MS.gene94865.t1 MTR_1g070455 45.122 82 42 1 115 193 271 352 1.55e-15 77.4
MS.gene94865.t1 MTR_2g083870 50.794 63 31 0 135 197 81 143 1.97e-15 75.9
MS.gene94865.t1 MTR_4g127040 43.529 85 45 1 110 191 218 302 2.26e-15 76.3
MS.gene94865.t1 MTR_8g087000 47.619 63 33 0 135 197 78 140 2.37e-15 75.1
MS.gene94865.t1 MTR_4g094908 47.887 71 37 0 135 205 267 337 2.45e-15 76.6
MS.gene94865.t1 MTR_8g087000 47.619 63 33 0 135 197 77 139 2.70e-15 75.1
MS.gene94865.t1 MTR_5g042920 41.026 78 45 1 132 209 318 394 3.61e-14 73.6
MS.gene94865.t1 MTR_7g011820 43.939 66 36 1 132 197 408 472 3.74e-14 73.9
MS.gene94865.t1 MTR_7g011820 43.077 65 35 2 130 194 224 286 9.42e-11 63.5
MS.gene94865.t1 MTR_8g099350 38.043 92 51 2 104 189 98 189 4.36e-14 72.8
MS.gene94865.t1 MTR_1g009613 34.694 98 58 2 114 205 237 334 5.04e-14 72.4
MS.gene94865.t1 MTR_0117s0040 39.506 81 49 0 128 208 68 148 7.17e-14 70.9
MS.gene94865.t1 MTR_3g108960 37.778 90 55 1 103 191 282 371 1.07e-13 72.0
MS.gene94865.t1 MTR_3g106060 39.048 105 60 2 109 212 112 213 4.04e-13 69.3
MS.gene94865.t1 MTR_2g045360 37.778 90 51 1 135 219 212 301 6.80e-13 69.7
MS.gene94865.t1 MTR_7g100510 42.105 76 41 2 135 210 362 434 1.93e-12 68.6
MS.gene94865.t1 MTR_7g080020 39.744 78 40 2 134 205 493 569 2.34e-12 68.6
MS.gene94865.t1 MTR_7g080020 46.377 69 35 2 126 194 272 338 3.18e-12 68.2
MS.gene94865.t1 MTR_1g077780 40.580 69 40 1 132 200 60 127 2.91e-12 64.3
MS.gene94865.t1 MTR_4g130900 30.702 114 73 3 85 197 313 421 3.46e-12 67.8
MS.gene94865.t1 MTR_4g094588 45.902 61 32 1 134 194 178 237 3.81e-12 67.0
MS.gene94865.t1 MTR_4g007060 43.939 66 37 0 129 194 123 188 5.81e-12 65.9
MS.gene94865.t1 MTR_3g009470 50.000 62 29 2 133 194 279 338 6.06e-12 67.4
MS.gene94865.t1 MTR_3g009470 38.806 67 40 1 134 200 495 560 1.67e-11 65.9
MS.gene94865.t1 MTR_4g007060 43.939 66 37 0 129 194 157 222 7.40e-12 65.9
MS.gene94865.t1 MTR_5g091390 46.774 62 32 1 134 195 157 217 7.94e-12 65.9
MS.gene94865.t1 MTR_7g080000 42.188 64 36 1 134 197 432 494 8.30e-12 67.0
MS.gene94865.t1 MTR_3g009470 50.000 62 29 2 133 194 279 338 9.01e-12 66.6
MS.gene94865.t1 MTR_7g071120 48.529 68 33 2 127 194 159 224 9.49e-12 66.2
MS.gene94865.t1 MTR_2g105060 43.750 64 36 0 132 195 92 155 1.03e-11 64.7
MS.gene94865.t1 MTR_3g095040 39.130 69 39 3 131 198 115 181 1.12e-11 63.9
MS.gene94865.t1 MTR_3g056100 38.806 67 40 1 134 200 415 480 1.40e-11 65.9
MS.gene94865.t1 MTR_3g056100 38.806 67 40 1 134 200 402 467 1.44e-11 65.9
MS.gene94865.t1 MTR_5g094430 38.806 67 40 1 134 200 364 429 1.51e-11 65.9
MS.gene94865.t1 MTR_3g056100 38.806 67 40 1 134 200 258 323 1.55e-11 65.5
MS.gene94865.t1 MTR_3g056100 38.806 67 40 1 134 200 271 336 1.60e-11 65.5
MS.gene94865.t1 MTR_5g094430 38.806 67 40 1 134 200 230 295 2.15e-11 65.1
MS.gene94865.t1 MTR_2g023930 33.010 103 65 3 93 194 266 365 2.17e-11 65.5
MS.gene94865.t1 MTR_5g094430 38.806 67 40 1 134 200 252 317 2.21e-11 65.1
MS.gene94865.t1 MTR_2g105060 43.750 64 36 0 132 195 167 230 2.42e-11 64.3
MS.gene94865.t1 MTR_1g013790 33.058 121 73 2 100 215 65 182 4.99e-11 62.8
MS.gene94865.t1 MTR_1g086790 44.262 61 33 1 134 194 158 217 5.59e-11 63.2
MS.gene94865.t1 MTR_3g053330 36.145 83 50 2 112 194 232 311 5.96e-11 63.9
MS.gene94865.t1 MTR_5g097490 33.628 113 61 3 98 197 203 314 6.53e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94865.t1 AT5G52830 48.980 98 48 2 112 209 144 239 1.05e-23 100
MS.gene94865.t1 AT4G01250 35.099 151 92 2 78 224 74 222 5.20e-22 95.1
MS.gene94865.t1 AT4G23550 43.182 88 49 1 126 213 132 218 2.35e-18 84.7
MS.gene94865.t1 AT5G45050 40.594 101 59 1 94 194 1002 1101 1.45e-17 84.7
MS.gene94865.t1 AT5G45050 40.594 101 59 1 94 194 1141 1240 1.75e-17 84.7
MS.gene94865.t1 AT5G45050 40.594 101 59 1 94 194 1113 1212 1.94e-17 84.3
MS.gene94865.t1 AT5G28650 41.304 92 51 1 105 193 230 321 2.12e-17 82.4
MS.gene94865.t1 AT1G30650 34.667 150 94 1 88 237 175 320 2.16e-17 83.2
MS.gene94865.t1 AT3G04670 41.304 92 51 1 105 193 230 321 2.97e-17 82.0
MS.gene94865.t1 AT2G34830 55.000 60 27 0 135 194 216 275 6.34e-17 82.0
MS.gene94865.t1 AT2G34830 55.000 60 27 0 135 194 225 284 7.16e-17 81.6
MS.gene94865.t1 AT2G23320 43.529 85 45 1 110 191 213 297 1.10e-16 80.1
MS.gene94865.t1 AT4G24240 40.860 93 52 1 102 191 246 338 1.80e-15 77.0
MS.gene94865.t1 AT3G58710 46.970 66 35 0 135 200 71 136 6.58e-15 74.3
MS.gene94865.t1 AT3G58710 46.970 66 35 0 135 200 72 137 7.34e-15 74.3
MS.gene94865.t1 AT4G31550 38.000 100 59 1 103 199 211 310 9.85e-15 74.7
MS.gene94865.t1 AT4G31550 38.710 93 54 1 110 199 219 311 1.29e-14 74.3
MS.gene94865.t1 AT1G29280 48.333 60 31 0 135 194 75 134 2.27e-14 72.8
MS.gene94865.t1 AT2G24570 39.080 87 50 1 110 193 216 302 3.03e-14 73.2
MS.gene94865.t1 AT2G03340 41.558 77 44 1 132 208 413 488 3.83e-14 73.9
MS.gene94865.t1 AT1G80840 32.317 164 95 4 129 289 141 291 7.63e-14 71.6
MS.gene94865.t1 AT2G30590 39.080 87 50 1 110 193 286 372 1.38e-13 71.6
MS.gene94865.t1 AT5G43290 41.096 73 42 1 119 191 99 170 4.26e-13 69.3
MS.gene94865.t1 AT3G01080 36.559 93 48 2 112 194 312 403 4.59e-13 70.5
MS.gene94865.t1 AT3G01080 36.559 93 48 2 112 194 274 365 6.05e-13 70.1
MS.gene94865.t1 AT2G04880 44.444 63 34 1 135 197 308 369 1.78e-12 68.6
MS.gene94865.t1 AT4G26640 41.026 78 43 3 132 208 169 244 1.87e-12 68.6
MS.gene94865.t1 AT2G04880 44.444 63 34 1 135 197 284 345 1.93e-12 68.6
MS.gene94865.t1 AT4G26640 42.105 76 41 3 132 206 33 106 1.95e-12 68.2
MS.gene94865.t1 AT4G26640 42.105 76 41 3 132 206 33 106 1.95e-12 68.2
MS.gene94865.t1 AT4G26640 42.105 76 41 3 132 206 33 106 1.95e-12 68.2
MS.gene94865.t1 AT4G26640 42.105 76 41 3 132 206 33 106 1.95e-12 68.2
MS.gene94865.t1 AT4G26640 41.026 78 43 3 132 208 137 212 2.03e-12 68.6
MS.gene94865.t1 AT4G26640 41.026 78 43 3 132 208 209 284 2.09e-12 68.6
MS.gene94865.t1 AT5G07100 46.970 66 34 1 129 194 19 83 2.11e-12 66.2
MS.gene94865.t1 AT5G07100 46.970 66 34 1 129 194 19 83 2.11e-12 66.2
MS.gene94865.t1 AT5G07100 46.970 66 34 1 129 194 19 83 2.11e-12 66.2
MS.gene94865.t1 AT5G07100 46.970 66 34 1 129 194 19 83 2.11e-12 66.2
MS.gene94865.t1 AT5G45260 34.737 95 51 3 106 197 1187 1273 2.24e-12 68.9
MS.gene94865.t1 AT5G07100 46.970 66 34 1 129 194 112 176 2.47e-12 67.4
MS.gene94865.t1 AT1G13960 42.857 63 35 1 132 194 254 315 4.00e-12 67.0
MS.gene94865.t1 AT1G13960 42.857 63 35 1 132 194 407 468 4.34e-12 67.4
MS.gene94865.t1 AT2G47260 36.290 124 63 4 107 230 148 255 6.41e-12 66.2
MS.gene94865.t1 AT4G18170 35.577 104 61 2 96 194 129 231 1.24e-11 65.5
MS.gene94865.t1 AT2G25000 45.902 61 33 0 134 194 103 163 1.81e-11 63.5
MS.gene94865.t1 AT2G25000 45.902 61 33 0 134 194 103 163 1.81e-11 63.5
MS.gene94865.t1 AT1G29860 43.548 62 34 1 134 195 136 196 1.87e-11 64.3
MS.gene94865.t1 AT2G25000 45.902 61 33 0 134 194 125 185 1.89e-11 63.9
MS.gene94865.t1 AT2G21900 45.161 62 33 1 134 195 109 169 1.98e-11 63.2
MS.gene94865.t1 AT4G31800 40.476 84 48 1 134 217 111 192 3.06e-11 63.2
MS.gene94865.t1 AT5G56270 39.062 64 38 1 134 197 487 549 3.07e-11 65.1
MS.gene94865.t1 AT2G37260 37.037 81 46 2 115 191 326 405 3.30e-11 64.7
MS.gene94865.t1 AT2G37260 37.037 81 46 2 115 191 244 323 3.79e-11 63.9
MS.gene94865.t1 AT2G37260 37.037 81 46 2 115 191 246 325 3.83e-11 63.9
MS.gene94865.t1 AT4G30935 38.095 63 38 1 135 197 332 393 4.26e-11 64.3
MS.gene94865.t1 AT2G25000 45.902 61 33 0 134 194 146 206 4.46e-11 63.2
MS.gene94865.t1 AT2G46400 38.710 93 50 2 104 189 69 161 6.76e-11 62.8
MS.gene94865.t1 AT4G31800 40.476 84 48 1 134 217 176 257 7.51e-11 62.8
MS.gene94865.t1 AT1G68150 35.366 82 50 1 115 196 219 297 9.89e-11 62.8
MS.gene94865.t1 AT1G55600 45.000 60 32 1 135 194 308 366 9.98e-11 63.2

Find 75 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGAATATTCCTGCTTTC+TGG 0.128706 6.1:-29543741 None:intergenic
CCTTCAGGAAACAAACTTAT+TGG 0.167476 6.1:+29543951 MS.gene94865:CDS
TTTCTCTAGCAGCGGGTAAA+TGG 0.192922 6.1:-29543815 None:intergenic
TACCCGCTGTTGGAAATTTC+AGG 0.250971 6.1:+29543658 MS.gene94865:CDS
TGTGATTGATTGAGCTTTCT+TGG 0.276762 6.1:-29542226 None:intergenic
TGGTGGTCGTGGACAAAATA+TGG 0.290490 6.1:+29542490 MS.gene94865:CDS
TAGTCTTTGATGACTTGTTC+TGG 0.291346 6.1:-29543632 None:intergenic
TATGTCAGAGGATTTCTTAT+TGG 0.311118 6.1:+29544019 MS.gene94865:CDS
GTGGTGGTGCAGGGGCTAAT+AGG 0.332725 6.1:-29542046 None:intergenic
AACATTATCACTAGTGTTCA+TGG 0.339452 6.1:+29542079 MS.gene94865:CDS
GTGATTGATTGAGCTTTCTT+GGG 0.361329 6.1:-29542225 None:intergenic
CAAATAAGCTTTCAGAAGAT+TGG 0.368905 6.1:+29542470 MS.gene94865:CDS
AGTCTTTGATGACTTGTTCT+GGG 0.370924 6.1:-29543631 None:intergenic
AGTCAAGTTGGTGGTGGTGC+AGG 0.372354 6.1:-29542056 None:intergenic
AACACTTGATTGTCATTGTT+TGG 0.388067 6.1:-29542163 None:intergenic
GAATCACAAATCCTGCCTTC+AGG 0.403451 6.1:+29543936 MS.gene94865:CDS
AATTAACAACAAGGTAACTT+TGG 0.407679 6.1:+29542432 MS.gene94865:CDS
GAACCCAGCTTTGAAATGTT+TGG 0.416902 6.1:-29543687 None:intergenic
GTGATTCACCGGAGTAAACC+TGG 0.417652 6.1:-29543920 None:intergenic
GATTACCCAACACCAGATCT+AGG 0.420153 6.1:+29542254 MS.gene94865:CDS
CAAAACATAATTCAAGAATC+AGG 0.420705 6.1:+29542305 MS.gene94865:CDS
TTCTCTAGCAGCGGGTAAAT+GGG 0.428823 6.1:-29543814 None:intergenic
GTCAAGTTGGTGGTGGTGCA+GGG 0.440160 6.1:-29542055 None:intergenic
CACAACAAAAGTGTCCTCTT+TGG 0.441667 6.1:-29543544 None:intergenic
GCAGGTAAATGGAACTCTAT+TGG 0.442204 6.1:+29543600 MS.gene94865:CDS
CTAAGTTCAGTTTCTGAATG+AGG 0.443490 6.1:-29543786 None:intergenic
GTCACCAAACATTTCAAAGC+TGG 0.445873 6.1:+29543683 MS.gene94865:CDS
AGTGATAATGTTAGTCAAGT+TGG 0.462717 6.1:-29542068 None:intergenic
ATTAGGTAAAATCCTAGATC+TGG 0.473232 6.1:-29542266 None:intergenic
TAAGTTTGTTTCCTGAAGGC+AGG 0.474115 6.1:-29543947 None:intergenic
TCTGACATATCAGTCATGTT+TGG 0.477660 6.1:-29544005 None:intergenic
ACCTGGGCATTGCTACTCAT+TGG 0.480044 6.1:-29543903 None:intergenic
ATAGAGTTCCATTTACCTGC+TGG 0.487185 6.1:-29543597 None:intergenic
TGAGGGATTTCTGATTGACT+AGG 0.496461 6.1:-29543768 None:intergenic
GTTAGCGAAGGCGTTGGTAG+TGG 0.498129 6.1:-29541987 None:intergenic
CTAATAGGTGCAGTGGTGGT+CGG 0.503498 6.1:-29542031 None:intergenic
TAAGTTCAGTTTCTGAATGA+GGG 0.506377 6.1:-29543785 None:intergenic
GATTCAATTTCTCTAGCAGC+GGG 0.517766 6.1:-29543822 None:intergenic
TCACCAAACATTTCAAAGCT+GGG 0.518423 6.1:+29543684 MS.gene94865:CDS
AAAATCCTAGATCTGGTGTT+GGG 0.524682 6.1:-29542259 None:intergenic
AAGACTAGATTACCCGCTGT+TGG 0.528458 6.1:+29543648 MS.gene94865:CDS
GAGTAATGCATAATCTGAAA+TGG 0.529216 6.1:-29542119 None:intergenic
GAAGGCGTTGGTAGTGGTCA+TGG 0.541151 6.1:-29541981 None:intergenic
CCAATAAGTTTGTTTCCTGA+AGG 0.543295 6.1:-29543951 None:intergenic
GAGGGATTTCTGATTGACTA+GGG 0.547273 6.1:-29543767 None:intergenic
AGGCAGGATTTGTGATTCAC+CGG 0.548075 6.1:-29543931 None:intergenic
ATAAGCTTTCAGAAGATTGG+TGG 0.556521 6.1:+29542473 MS.gene94865:CDS
TCAAGTTGGTGGTGGTGCAG+GGG 0.561949 6.1:-29542054 None:intergenic
TGATTGATTGAGCTTTCTTG+GGG 0.561989 6.1:-29542224 None:intergenic
TAAAATCCTAGATCTGGTGT+TGG 0.562048 6.1:-29542260 None:intergenic
GCCAATGAGTAGCAATGCCC+AGG 0.566515 6.1:+29543902 MS.gene94865:CDS
TTTCAGAAGATTGGTGGTCG+TGG 0.572428 6.1:+29542479 MS.gene94865:CDS
AGCAATGCCCAGGTTTACTC+CGG 0.575866 6.1:+29543912 MS.gene94865:CDS
GCAGGGGCTAATAGGTGCAG+TGG 0.576808 6.1:-29542038 None:intergenic
ATGTGAAAAGACCTTGGATG+TGG 0.577521 6.1:-29542535 None:intergenic
TGAAATGGTAGGATATTGAC+TGG 0.578765 6.1:-29542104 None:intergenic
ATGTCGATCATCCAGAAAGC+AGG 0.580169 6.1:+29543730 MS.gene94865:CDS
ATAGAAAACCATCATTGAAG+TGG 0.585500 6.1:-29544049 None:intergenic
AATGCATAATCTGAAATGGT+AGG 0.587445 6.1:-29542115 None:intergenic
TGTGGGGTTAGCGAAGGCGT+TGG 0.595580 6.1:-29541993 None:intergenic
AAAGCTTATTTGTTCTCACA+TGG 0.598586 6.1:-29542459 None:intergenic
GACCTGAAATTTCCAACAGC+GGG 0.604025 6.1:-29543660 None:intergenic
AGTTGTTGTGGGGTTAGCGA+AGG 0.605077 6.1:-29541999 None:intergenic
TGATTCAATTTCTCTAGCAG+CGG 0.608307 6.1:-29543823 None:intergenic
CTTTGATGACTTGTTCTGGG+AGG 0.611922 6.1:-29543628 None:intergenic
TGATTCACCGGAGTAAACCT+GGG 0.612077 6.1:-29543919 None:intergenic
GGGGCTAATAGGTGCAGTGG+TGG 0.614826 6.1:-29542035 None:intergenic
TTAGCGGGTCCCCACATCCA+AGG 0.623038 6.1:+29542524 MS.gene94865:CDS
TGTGAAAAGACCTTGGATGT+GGG 0.630725 6.1:-29542534 None:intergenic
GATAATGTTAGTCAAGTTGG+TGG 0.636625 6.1:-29542065 None:intergenic
GTGAAAAGACCTTGGATGTG+GGG 0.637723 6.1:-29542533 None:intergenic
AATGTTAGTCAAGTTGGTGG+TGG 0.642962 6.1:-29542062 None:intergenic
AAACATGACTGATATGTCAG+AGG 0.673297 6.1:+29544007 MS.gene94865:CDS
GATTGATTGAGCTTTCTTGG+GGG 0.688353 6.1:-29542223 None:intergenic
CGACCTGAAATTTCCAACAG+CGG 0.704425 6.1:-29543661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATAAATAAATTTTAT+GGG - chr6.1:29542970-29542989 None:intergenic 0.0%
!!! TTAAATATTTTAATATAAAA+AGG + chr6.1:29543039-29543058 MS.gene94865:intron 0.0%
!!! TTTAAAATAAATAAATTTTA+TGG - chr6.1:29542971-29542990 None:intergenic 0.0%
!! ACTAAAAATATATGTTTATT+GGG - chr6.1:29543384-29543403 None:intergenic 10.0%
!! TACTAAAAATATATGTTTAT+TGG - chr6.1:29543385-29543404 None:intergenic 10.0%
!!! TATCAAAATTATTGTATTTT+TGG + chr6.1:29542826-29542845 MS.gene94865:intron 10.0%
!! AAAAGAAAGATGTATTTATA+TGG + chr6.1:29543159-29543178 MS.gene94865:intron 15.0%
!! AAATTTATTCATAGGATAAT+TGG - chr6.1:29543066-29543085 None:intergenic 15.0%
!!! ATATGTAAAAGTTAGATTTT+TGG - chr6.1:29542561-29542580 None:intergenic 15.0%
!!! ATTTTAGTCAATCATAAATA+AGG - chr6.1:29543020-29543039 None:intergenic 15.0%
!!! CTAATGTTTAAATATGTTTT+TGG - chr6.1:29543186-29543205 None:intergenic 15.0%
!! AAATTAACCTTATCAAGTAT+TGG - chr6.1:29543244-29543263 None:intergenic 20.0%
!! AACAAGTAGAAAAAACAAAA+AGG - chr6.1:29542934-29542953 None:intergenic 20.0%
!! GTATAAGATATTAGCTATTA+AGG + chr6.1:29543402-29543421 MS.gene94865:intron 20.0%
!! TCACTTTGTATTTATGATAA+GGG + chr6.1:29543210-29543229 MS.gene94865:intron 20.0%
!! TTACAGAAAAATTAACAACA+AGG + chr6.1:29542423-29542442 MS.gene94865:intron 20.0%
!! TTCACTTTGTATTTATGATA+AGG + chr6.1:29543209-29543228 MS.gene94865:intron 20.0%
!!! TAACAATCAAAACTTTTACA+TGG - chr6.1:29542887-29542906 None:intergenic 20.0%
!!! TTTTTGGTTTAAGTACAAAA+TGG + chr6.1:29542842-29542861 MS.gene94865:intron 20.0%
! AATTAACAACAAGGTAACTT+TGG + chr6.1:29542432-29542451 MS.gene94865:CDS 25.0%
! ACAAATATATCACTCATTTC+AGG + chr6.1:29543322-29543341 MS.gene94865:intron 25.0%
! CAAAACATAATTCAAGAATC+AGG + chr6.1:29542305-29542324 MS.gene94865:CDS 25.0%
! TAATACAAACATGATACCTA+GGG + chr6.1:29542617-29542636 MS.gene94865:intron 25.0%
! TATGGACAAAAAAACATTAG+CGG + chr6.1:29542508-29542527 MS.gene94865:CDS 25.0%
! TCTCTGCAAAATTTATTCAT+AGG - chr6.1:29543074-29543093 None:intergenic 25.0%
! TTAATACAAACATGATACCT+AGG + chr6.1:29542616-29542635 MS.gene94865:intron 25.0%
!! CAATCAATGAATGATTTTTC+AGG + chr6.1:29543457-29543476 MS.gene94865:intron 25.0%
!! GAAAACAAGTTTTCAACATT+AGG - chr6.1:29543852-29543871 None:intergenic 25.0%
!!! TTTCTACTTGTTGTTTGTTT+TGG + chr6.1:29542942-29542961 MS.gene94865:intron 25.0%
AAAGCTTATTTGTTCTCACA+TGG - chr6.1:29542462-29542481 None:intergenic 30.0%
AACACTTGATTGTCATTGTT+TGG - chr6.1:29542166-29542185 None:intergenic 30.0%
AACATTATCACTAGTGTTCA+TGG + chr6.1:29542079-29542098 MS.gene94865:CDS 30.0%
ATAGAAAACCATCATTGAAG+TGG - chr6.1:29544052-29544071 None:intergenic 30.0%
ATGGACAAAAAAACATTAGC+GGG + chr6.1:29542509-29542528 MS.gene94865:CDS 30.0%
ATTAAGGTGATACGATTTAG+AGG + chr6.1:29543418-29543437 MS.gene94865:intron 30.0%
ATTAGGTAAAATCCTAGATC+TGG - chr6.1:29542269-29542288 None:intergenic 30.0%
CAAATAAGCTTTCAGAAGAT+TGG + chr6.1:29542470-29542489 MS.gene94865:CDS 30.0%
GAGTAATGCATAATCTGAAA+TGG - chr6.1:29542122-29542141 None:intergenic 30.0%
TAAGTTCAGTTTCTGAATGA+GGG - chr6.1:29543788-29543807 None:intergenic 30.0%
TATGTCAGAGGATTTCTTAT+TGG + chr6.1:29544019-29544038 MS.gene94865:CDS 30.0%
! AATGCATAATCTGAAATGGT+AGG - chr6.1:29542118-29542137 None:intergenic 30.0%
! AGTGATAATGTTAGTCAAGT+TGG - chr6.1:29542071-29542090 None:intergenic 30.0%
! GCTTTTTGTGAATCTGAATT+AGG - chr6.1:29542286-29542305 None:intergenic 30.0%
!!! ATACCTAGGGTTTTAAATAG+TGG + chr6.1:29542630-29542649 MS.gene94865:intron 30.0%
!!! CATCTTTGTTTTCTATCTGT+TGG - chr6.1:29543097-29543116 None:intergenic 30.0%
AAAATCCTAGATCTGGTGTT+GGG - chr6.1:29542262-29542281 None:intergenic 35.0%
AAACACGCCAATACTTGATA+AGG + chr6.1:29543234-29543253 MS.gene94865:intron 35.0%
AAACATGACTGATATGTCAG+AGG + chr6.1:29544007-29544026 MS.gene94865:CDS 35.0%
ACAAAAAAGTGACACCAAAG+AGG + chr6.1:29543530-29543549 MS.gene94865:CDS 35.0%
ACTTGAATATTCCTGCTTTC+TGG - chr6.1:29543744-29543763 None:intergenic 35.0%
ATAAGCTTTCAGAAGATTGG+TGG + chr6.1:29542473-29542492 MS.gene94865:CDS 35.0%
ATGAAAAACCAGCAGGTAAA+TGG + chr6.1:29543589-29543608 MS.gene94865:CDS 35.0%
CCTTCAGGAAACAAACTTAT+TGG + chr6.1:29543951-29543970 MS.gene94865:CDS 35.0%
CTAAGTTCAGTTTCTGAATG+AGG - chr6.1:29543789-29543808 None:intergenic 35.0%
GAGTGAAAAAAGTTGTTGTG+GGG - chr6.1:29542012-29542031 None:intergenic 35.0%
GGAGTGAAAAAAGTTGTTGT+GGG - chr6.1:29542013-29542032 None:intergenic 35.0%
GTGATTGATTGAGCTTTCTT+GGG - chr6.1:29542228-29542247 None:intergenic 35.0%
TAAAATCCTAGATCTGGTGT+TGG - chr6.1:29542263-29542282 None:intergenic 35.0%
TCACCAAACATTTCAAAGCT+GGG + chr6.1:29543684-29543703 MS.gene94865:CDS 35.0%
TCTGACATATCAGTCATGTT+TGG - chr6.1:29544008-29544027 None:intergenic 35.0%
TGAAATGGTAGGATATTGAC+TGG - chr6.1:29542107-29542126 None:intergenic 35.0%
TGATTCAATTTCTCTAGCAG+CGG - chr6.1:29543826-29543845 None:intergenic 35.0%
TGATTGATTGAGCTTTCTTG+GGG - chr6.1:29542227-29542246 None:intergenic 35.0%
TGTGATTGATTGAGCTTTCT+TGG - chr6.1:29542229-29542248 None:intergenic 35.0%
! AGACCACTATTTAAAACCCT+AGG - chr6.1:29542636-29542655 None:intergenic 35.0%
! CCAATAAGTTTGTTTCCTGA+AGG - chr6.1:29543954-29543973 None:intergenic 35.0%
! CTGAATTGTGGTCTTAATCT+AGG + chr6.1:29542682-29542701 MS.gene94865:intron 35.0%
! TTTTGGATGTGAAAAGACCT+TGG - chr6.1:29542544-29542563 None:intergenic 35.0%
!! ACTTTTGTTGTGACGTTTGT+TGG + chr6.1:29543555-29543574 MS.gene94865:CDS 35.0%
!! AGTCTTTGATGACTTGTTCT+GGG - chr6.1:29543634-29543653 None:intergenic 35.0%
!! GATAATGTTAGTCAAGTTGG+TGG - chr6.1:29542068-29542087 None:intergenic 35.0%
!! GATTTTGACCACTTCAATGA+TGG + chr6.1:29544041-29544060 MS.gene94865:CDS 35.0%
!! TAGTCTTTGATGACTTGTTC+TGG - chr6.1:29543635-29543654 None:intergenic 35.0%
ATAGAGTTCCATTTACCTGC+TGG - chr6.1:29543600-29543619 None:intergenic 40.0%
ATGTGAAAAGACCTTGGATG+TGG - chr6.1:29542538-29542557 None:intergenic 40.0%
ATTCAGTGCAATGTCAAGGA+TGG - chr6.1:29542668-29542687 None:intergenic 40.0%
CACAATCATGAAAAACCAGC+AGG + chr6.1:29543582-29543601 MS.gene94865:CDS 40.0%
CACAATTCAGTGCAATGTCA+AGG - chr6.1:29542672-29542691 None:intergenic 40.0%
CGGAGTGAAAAAAGTTGTTG+TGG - chr6.1:29542014-29542033 None:intergenic 40.0%
CTTGACATTGCACTGAATTG+TGG + chr6.1:29542670-29542689 MS.gene94865:intron 40.0%
GAGGGATTTCTGATTGACTA+GGG - chr6.1:29543770-29543789 None:intergenic 40.0%
GATTCAATTTCTCTAGCAGC+GGG - chr6.1:29543825-29543844 None:intergenic 40.0%
GATTGATTGAGCTTTCTTGG+GGG - chr6.1:29542226-29542245 None:intergenic 40.0%
GCAGGTAAATGGAACTCTAT+TGG + chr6.1:29543600-29543619 MS.gene94865:CDS 40.0%
GTCACCAAACATTTCAAAGC+TGG + chr6.1:29543683-29543702 MS.gene94865:CDS 40.0%
TGAGGGATTTCTGATTGACT+AGG - chr6.1:29543771-29543790 None:intergenic 40.0%
TGTGAAAAGACCTTGGATGT+GGG - chr6.1:29542537-29542556 None:intergenic 40.0%
! ACTCATTTCAGGTAGAGAGT+TGG + chr6.1:29543333-29543352 MS.gene94865:intron 40.0%
! CTCATTTCAGGTAGAGAGTT+GGG + chr6.1:29543334-29543353 MS.gene94865:intron 40.0%
! TAAGTTTGTTTCCTGAAGGC+AGG - chr6.1:29543950-29543969 None:intergenic 40.0%
!! AATGTTAGTCAAGTTGGTGG+TGG - chr6.1:29542065-29542084 None:intergenic 40.0%
!! CACAACAAAAGTGTCCTCTT+TGG - chr6.1:29543547-29543566 None:intergenic 40.0%
!! GAACCCAGCTTTGAAATGTT+TGG - chr6.1:29543690-29543709 None:intergenic 40.0%
AAGACTAGATTACCCGCTGT+TGG + chr6.1:29543648-29543667 MS.gene94865:CDS 45.0%
AGGCAGGATTTGTGATTCAC+CGG - chr6.1:29543934-29543953 None:intergenic 45.0%
ATGTCGATCATCCAGAAAGC+AGG + chr6.1:29543730-29543749 MS.gene94865:CDS 45.0%
CGACCTGAAATTTCCAACAG+CGG - chr6.1:29543664-29543683 None:intergenic 45.0%
GAATCACAAATCCTGCCTTC+AGG + chr6.1:29543936-29543955 MS.gene94865:CDS 45.0%
GACCTGAAATTTCCAACAGC+GGG - chr6.1:29543663-29543682 None:intergenic 45.0%
GATTACCCAACACCAGATCT+AGG + chr6.1:29542254-29542273 MS.gene94865:CDS 45.0%
GTGAAAAGACCTTGGATGTG+GGG - chr6.1:29542536-29542555 None:intergenic 45.0%
TACCCGCTGTTGGAAATTTC+AGG + chr6.1:29543658-29543677 MS.gene94865:CDS 45.0%
TGATTCACCGGAGTAAACCT+GGG - chr6.1:29543922-29543941 None:intergenic 45.0%
TGGTGGTCGTGGACAAAATA+TGG + chr6.1:29542490-29542509 MS.gene94865:CDS 45.0%
TTCTCTAGCAGCGGGTAAAT+GGG - chr6.1:29543817-29543836 None:intergenic 45.0%
TTTCTCTAGCAGCGGGTAAA+TGG - chr6.1:29543818-29543837 None:intergenic 45.0%
! TTTCAGAAGATTGGTGGTCG+TGG + chr6.1:29542479-29542498 MS.gene94865:CDS 45.0%
!! CTTTGATGACTTGTTCTGGG+AGG - chr6.1:29543631-29543650 None:intergenic 45.0%
AGCAATGCCCAGGTTTACTC+CGG + chr6.1:29543912-29543931 MS.gene94865:CDS 50.0%
AGCTTTCTTGGGGGTTGTTG+TGG - chr6.1:29542217-29542236 None:intergenic 50.0%
CTAATAGGTGCAGTGGTGGT+CGG - chr6.1:29542034-29542053 None:intergenic 50.0%
GTGATTCACCGGAGTAAACC+TGG - chr6.1:29543923-29543942 None:intergenic 50.0%
! ACCTGGGCATTGCTACTCAT+TGG - chr6.1:29543906-29543925 None:intergenic 50.0%
! AGTTGTTGTGGGGTTAGCGA+AGG - chr6.1:29542002-29542021 None:intergenic 50.0%
GCCAATGAGTAGCAATGCCC+AGG + chr6.1:29543902-29543921 MS.gene94865:CDS 55.0%
!! AGTCAAGTTGGTGGTGGTGC+AGG - chr6.1:29542059-29542078 None:intergenic 55.0%
!! GTCAAGTTGGTGGTGGTGCA+GGG - chr6.1:29542058-29542077 None:intergenic 55.0%
!! GTTAGCGAAGGCGTTGGTAG+TGG - chr6.1:29541990-29542009 None:intergenic 55.0%
!! TCAAGTTGGTGGTGGTGCAG+GGG - chr6.1:29542057-29542076 None:intergenic 55.0%
GCAGGGGCTAATAGGTGCAG+TGG - chr6.1:29542041-29542060 None:intergenic 60.0%
GGGGCTAATAGGTGCAGTGG+TGG - chr6.1:29542038-29542057 None:intergenic 60.0%
! GTGGTGGTGCAGGGGCTAAT+AGG - chr6.1:29542049-29542068 None:intergenic 60.0%
! TGTGGGGTTAGCGAAGGCGT+TGG - chr6.1:29541996-29542015 None:intergenic 60.0%
! TTAGCGGGTCCCCACATCCA+AGG + chr6.1:29542524-29542543 MS.gene94865:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 29541983 29544079 29541983 ID=MS.gene94865
chr6.1 mRNA 29541983 29544079 29541983 ID=MS.gene94865.t1;Parent=MS.gene94865
chr6.1 exon 29541983 29542326 29541983 ID=MS.gene94865.t1.exon1;Parent=MS.gene94865.t1
chr6.1 CDS 29541983 29542326 29541983 ID=cds.MS.gene94865.t1;Parent=MS.gene94865.t1
chr6.1 exon 29542429 29542545 29542429 ID=MS.gene94865.t1.exon2;Parent=MS.gene94865.t1
chr6.1 CDS 29542429 29542545 29542429 ID=cds.MS.gene94865.t1;Parent=MS.gene94865.t1
chr6.1 exon 29543479 29544079 29543479 ID=MS.gene94865.t1.exon3;Parent=MS.gene94865.t1
chr6.1 CDS 29543479 29544079 29543479 ID=cds.MS.gene94865.t1;Parent=MS.gene94865.t1
Gene Sequence

>MS.gene94865

ATGACCACTACCAACGCCTTCGCTAACCCCACAACAACTTTTTTCACTCCGACCACCACTGCACCTATTAGCCCCTGCACCACCACCAACTTGACTAACATTATCACTAGTGTTCATGGAACCAGTCAATATCCTACCATTTCAGATTATGCATTACTCATCAAACAACAACAAATTCAACCAAACAATGACAATCAAGTGTTTGATCATGCATACAACTATTCATTTGTTCCACAACAACCCCCAAGAAAGCTCAATCAATCACAAATTCGATTACCCAACACCAGATCTAGGATTTTACCTAATTCAGATTCACAAAAAGCAAAACATAATTCAAGAATCAGGTAAATCATTTATTTTTTTATTTAAATATTTTTATTATAAATCAATCTTAATGAATTTTAATATTCAAAACATTTAAATGATTTATCTTTCTTATCTTACAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAATAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGTCTTTTCACATCCAAAAATCTAACTTTTACATATTCTTGTTTTATTTCATAATACAATAATTATGTGATTTAATACAAACATGATACCTAGGGTTTTAAATAGTGGTCTCTAGCATTACCATCCTTGACATTGCACTGAATTGTGGTCTTAATCTAGGTTTTGTTTGTGTTTCAATTTCAAAAACAGAATAAATTAGTACTCTATTCTCAAAAATGCGCAACATATTTACAAATTAAAAAATGTTACAAAATGAATGTCATTTTAATTATTCTATGTAATATCAAAATTATTGTATTTTTGGTTTAAGTACAAAATGGATCACTTTCTTCGTTTAATCCATGTAAAAGTTTTGATTGTTACTTTTATTCATTGCAAGTATAACACCTTTTTGTTTTTTCTACTTGTTGTTTGTTTTGGCTCCCATAAAATTTATTTATTTTAAAATTAGTTCTTGAATGTTCGTATTAATCCTTATTTATGATTGACTAAAATTAAATATTTTAATATAAAAAGGACCAATTATCCTATGAATAAATTTTGCAGAGACCAACAGATAGAAAACAAAGATGAAAAGCGAAACACAGTATATTTTCAAAGACTAAAAACTAAAAAAAAGAAAGATGTATTTATATGGACCAAAAACATATTTAAACATTAGTTTTTCACTTTGTATTTATGATAAGGGTAAACACGCCAATACTTGATAAGGTTAATTTAGTAAAATTACTATTTTGTTTTTTCATTGTTTGAATTTTGTTAATATGTATAAAATGAACAAATATATCACTCATTTCAGGTAGAGAGTTGGGTTGTAACATTTATGTAAAACTTAGCCCAATAAACATATATTTTTAGTATAAGATATTAGCTATTAAGGTGATACGATTTAGAGGTGTTTGATATAGAAAACAATCAATGAATGATTTTTCAGGAGCTACTTTAAATGTAGCAGTTCTAAAGATTGTTCAGCAAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAATCATGAAAAACCAGCAGGTAAATGGAACTCTATTGGTCTGACCTCCCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAGGTCGTCACCAAACATTTCAAAGCTGGGTTCTCAAAATGTGACGATGATGCATGTCGATCATCCAGAAAGCAGGAATATTCAAGTTCTCCCTAGTCAATCAGAAATCCCTCATTCAGAAACTGAACTTAGAGAGACCCATTTACCCGCTGCTAGAGAAATTGAATCATCTCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTACAGTTTGATGAGCCAATGAGTAGCAATGCCCAGGTTTACTCCGGTGAATCACAAATCCTGCCTTCAGGAAACAAACTTATTGGAAACTCTGATGACGATGAAGAAATTATGTTACCAAACATGACTGATATGTCAGAGGATTTCTTATTGGATTTTGACCACTTCAATGATGGTTTTCTATTTCCTTAG
Protein sequence

>MS.gene94865.t1

MTTTNAFANPTTTFFTPTTTAPISPCTTTNLTNIITSVHGTSQYPTISDYALLIKQQQIQPNNDNQVFDHAYNYSFVPQQPPRKLNQSQIRLPNTRSRILPNSDSQKAKHNSRIRKINNKVTLECHVRTNKLSEDWWSWTKYGQKNISGSPHPRSYFKCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKWNSIGLTSQNKSSKTRLPAVGNFRSSPNISKLGSQNVTMMHVDHPESRNIQVLPSQSEIPHSETELRETHLPAAREIESSPNVENLFSYDVTMLQFDEPMSSNAQVYSGESQILPSGNKLIGNSDDDEEIMLPNMTDMSEDFLLDFDHFNDGFLFP