AlfalfaGEDB | MS.gene94867

M. sativa cultivar XinJiangDaYe / MS.gene94867

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94867.t1	KEH26369.1	52.9	395	86	3	1	308	155	536	7.70E-64	254.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94867.t1	Q9FLX8	43.6	55	30	1	110	164	186	239	3.7e-06	53.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94867.t1	A0A072U999	52.9	395	86	3	1	308	155	536	5.5e-64	254.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene94867.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94867.t1	MTR_6g053200	79.899	199	27	2	110	308	351	536	1.50e-105	318
MS.gene94867.t1	MTR_6g053200	81.651	109	20	0	1	109	155	263	2.76e-26	108
MS.gene94867.t1	MTR_2g024380	49.246	199	101	0	110	308	272	470	8.12e-59	196
MS.gene94867.t1	MTR_2g024350	47.236	199	105	0	110	308	29	227	1.83e-58	187
MS.gene94867.t1	MTR_7g104980	50.246	203	100	1	106	308	14	215	4.46e-54	176
MS.gene94867.t1	MTR_8g067650	36.735	196	84	4	110	304	360	516	7.47e-28	113
MS.gene94867.t1	MTR_8g067635	38.919	185	79	4	110	293	370	521	6.78e-26	107
MS.gene94867.t1	MTR_8g069935	60.417	48	19	0	110	157	352	399	9.96e-12	65.5
MS.gene94867.t1	MTR_1g099600	48.148	54	27	1	111	164	207	259	3.69e-11	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 67 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAAATGCAATCAAAT+GGG	0.503558	6.1:+29571237	None:intergenic
AACACTTGACTGTTATTGTT+TGG	0.445737	6.1:-29571551	None:intergenic
AACATCATCACTAGTGTTCA+TGG	0.367859	6.1:+29571467	MS.gene94867:CDS
AAGACTAGATTACCCGCTGT+TGG	0.528458	6.1:+29572750	MS.gene94867:CDS
AAGCATGACTGATATGTCAG+AGG	0.660878	6.1:+29573109	MS.gene94867:CDS
AAGGGATTTCTGATTGACTA+GGG	0.549712	6.1:-29572869	None:intergenic
AAGGTGTTGGTAGTGGTCAT+GGG	0.574401	6.1:-29571368	None:intergenic
ACTTGAATATTCCTGCTCTC+TGG	0.454557	6.1:-29572843	None:intergenic
AGCAATGCCCATGATTACTC+CGG	0.626209	6.1:+29573014	MS.gene94867:CDS
AGGAAGGATTTGTGATTCAC+CGG	0.548075	6.1:-29573033	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTTGACTGTTATTGTT+TGG	-	chr6.1:29571554-29571573	None:intergenic	30.0%
ATGGACAAAAAAACATTAGC+GGG	+	chr6.1:29571899-29571918	MS.gene94867:intron	30.0%
ATTTGGTAAAATCCTAGATC+TGG	-	chr6.1:29571657-29571676	None:intergenic	30.0%
CCTTCAGAAAACAAACTTAT+TGG	+	chr6.1:29573053-29573072	MS.gene94867:CDS	30.0%
CTAATACAAACATGATACCT+TGG	+	chr6.1:29572010-29572029	MS.gene94867:intron	30.0%
GAAATAGAAAACCATCATTG+AGG	-	chr6.1:29573157-29573176	None:intergenic	30.0%
TATGTCAGAGGATTTCTTAT+TGG	+	chr6.1:29573121-29573140	MS.gene94867:CDS	30.0%
TTGAAACACAAACAAAACCT+AGG	-	chr6.1:29572095-29572114	None:intergenic	30.0%
AAAATCCTAGATCTGGTGTT+GGG	-	chr6.1:29571650-29571669	None:intergenic	35.0%
AACATCATCACTAGTGTTCA+TGG	+	chr6.1:29571467-29571486	MS.gene94867:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	29571245	29573181	29571245	ID=MS.gene94867
chr6.1	mRNA	29571245	29573181	29571245	ID=MS.gene94867.t1;Parent=MS.gene94867
chr6.1	exon	29571245	29571570	29571245	ID=MS.gene94867.t1.exon1;Parent=MS.gene94867.t1
chr6.1	CDS	29571245	29571570	29571245	ID=cds.MS.gene94867.t1;Parent=MS.gene94867.t1
chr6.1	exon	29572581	29573181	29572581	ID=MS.gene94867.t1.exon2;Parent=MS.gene94867.t1
chr6.1	CDS	29572581	29573181	29572581	ID=cds.MS.gene94867.t1;Parent=MS.gene94867.t1

Gene Sequence

>MS.gene94867

ATGCAATCAAATGGGCACGAGCTAAATAAATTTATATTCAACAAAAATCCTGTTAACCCCACGCCTACCAATAATTTCAATCCTCGTACCCTCACTACTCCTTGCACCCCAACTAGACTGACTCCCATGACCACTACCAACACCTTCGCTAACCCCACAACAACTTTTTTCACTCCGACCACTACTGGACCTATTAGCCCTAGCTCCACCACCAACTTGACTAACATCATCACTAGTGTTCATGGAACCAGTCAATATCCTACCATTTCAGATTATGCAATACTCATCAAACAACAACAAATTCAACCAAACAATAACAGTCAAGTGTTTGATCATGCATACAACTATTCATTTGTTCCACAACAACCCCCAAGAAAGCTCAATCAATCACAAATTCAATTACCCAACACCAGATCTAGGATTTTACCAAATTCAGATTCACAAAAAGCAAAACATAATTCAAGAATCGGGTAAATCATTTATTATTTTTATTTAAATTATTTTTATTATAAATCAATCTTAATGCATTTTAATGATCGAAACATTTAAATGATTTATCTTTCTTATCTTACAGAAAAATTAACAACAAGGTAACTTTGGAATGCCATGTGAGAACAAACAAGCTTTCAGAAGATTGGTGGTCGTGGACAAAATATGGACAAAAAAACATTAGCGGGTCCCCACATCCAAGGTCTTTTCACATTCAAAAATCTAACTTTTACGTATTCTTGTTTTATTTCATAATAAAAACAATAATTATGTGATCTAATACAAACATGATACCTTGGGTTTTAAATAGTGGTCTCTAGCATTACCATCCTTGCCATTGCACTAATTGTGGTCTTAACCTAGGTTTTGTTTGTGTTTCAATTTCAAAAACATAATAAATTAGTACTCTATTCTAAAAAATGCGTAACATATTTAAAAAATAAAAAATATGTTATAAAATGAGTGTCATTTTCAATATTCTATGTAATATCAAAATTAATGTATTTTTGGTTTAAGTACAAAATGGATCACTTTCTTCGTCTAATCCATGTAAAAGTTTTGATTGTTACTTTTATTCATTGCAAATATAACACCTTTTTATTTTTTCTTCTTGTTGTTTGTTTTTGTTCCCATAAAATTTATTTATCTTAAAATTAGTTCATGAATATTCATATTAATCCTTATTCCTGAACAAATATATCACTCATTTCAGGGAGGGAGTTGGGTTGTGACATTTATGTAAAACTTGACCAAATACACATATATTTTTAGTATATGATTTTAGCTATTAAAGTGATACGATTTAGAGGTGTTTGATATAGAAAACAATCTATGAATGATTTTTCAGGAGCTACTTTAAATGTAGCAGTTCTAAAGATTGTTCAGCAAAAAAACTAGTACAAAAAAGTGACACCAAAGAGGACACTTTTGTTGTGACGTTTGTTGGAGCACACAACCATGAAAAACCAGCAGGTAAATGGAACTCTATTGGTGGGACCTCCCAGAACAAGTCATCAAAGACTAGATTACCCGCTGTTGGAAATTTCAAGTCGTCACCAAACATTTCAAAGCTGGGTTCTCAAAATGTGACAATGATGCATGTCGATCATCCAGAGAGCAGGAATATTCAAGTTCTCCCTAGTCAATCAGAAATCCCTTATTCAGAAACTGAACTTATAGAGACCCATTTACCTGCTGCTAGAGAAATTGAATCATCTCCTAATGTTGAAAACTTGTTTTCATATGATGTGACGATGCTACAATCTGATGAGCCAATGAGTAGCAATGCCCATGATTACTCCGGTGAATCACAAATCCTTCCTTCAGAAAACAAACTTATTGGAAACTTTGATGACGATGAAGAAATTATGATACCAAGCATGACTGATATGTCAGAGGATTTCTTATTGGATTTTGACCACCTCAATGATGGTTTTCTATTTCCTTAG

Protein sequence

>MS.gene94867.t1

MQSNGHELNKFIFNKNPVNPTPTNNFNPRTLTTPCTPTRLTPMTTTNTFANPTTTFFTPTTTGPISPSSTTNLTNIITSVHGTSQYPTISDYAILIKQQQIQPNNNSQVSYFKCSSSKDCSAKKLVQKSDTKEDTFVVTFVGAHNHEKPAGKWNSIGGTSQNKSSKTRLPAVGNFKSSPNISKLGSQNVTMMHVDHPESRNIQVLPSQSEIPYSETELIETHLPAAREIESSPNVENLFSYDVTMLQSDEPMSSNAHDYSGESQILPSENKLIGNFDDDEEIMIPSMTDMSEDFLLDFDHLNDGFLFP