Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94936.t1 | XP_003625416.1 | 88.9 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 2.50E-22 | 115.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94936.t1 | F4JZT3 | 52.4 | 63 | 30 | 0 | 58 | 120 | 17 | 79 | 8.9e-13 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94936.t1 | G7KYH3 | 88.9 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 1.8e-22 | 115.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene94936.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94936.t1 | MTR_7g098910 | 88.889 | 63 | 7 | 0 | 58 | 120 | 21 | 83 | 9.99e-35 | 119 |
| MS.gene94936.t1 | MTR_0022s0450 | 72.727 | 55 | 15 | 0 | 66 | 120 | 41 | 95 | 1.79e-21 | 84.3 |
| MS.gene94936.t1 | MTR_7g099500 | 57.576 | 66 | 28 | 0 | 55 | 120 | 7 | 72 | 1.94e-20 | 82.4 |
| MS.gene94936.t1 | MTR_8g063580 | 51.389 | 72 | 35 | 0 | 49 | 120 | 2 | 73 | 6.05e-18 | 76.3 |
| MS.gene94936.t1 | MTR_3g075390 | 69.811 | 53 | 15 | 1 | 117 | 168 | 225 | 277 | 1.15e-16 | 76.6 |
| MS.gene94936.t1 | MTR_4g104370 | 64.000 | 50 | 17 | 1 | 120 | 168 | 227 | 276 | 2.51e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94936.t1 | AT5G26594 | 52.381 | 63 | 30 | 0 | 58 | 120 | 17 | 79 | 1.10e-17 | 75.9 |
| MS.gene94936.t1 | AT5G50260 | 66.000 | 50 | 16 | 1 | 120 | 168 | 226 | 275 | 1.12e-13 | 68.2 |
| MS.gene94936.t1 | AT3G48340 | 70.455 | 44 | 12 | 1 | 126 | 168 | 234 | 277 | 1.02e-11 | 62.8 |
Find 38 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTTCCGTCGATCCCTTTA+AGG | 0.208502 | 3.1:+44373318 | None:intergenic |
| ACATCTATGGCTACGGAAAC+AGG | 0.259636 | 3.1:+44371774 | None:intergenic |
| GGCTGGATCCAACACCTTAA+AGG | 0.285594 | 3.1:-44373332 | MS.gene94936:CDS |
| GCAGATGGCACAAACCTATC+AGG | 0.373500 | 3.1:-44373410 | None:intergenic |
| CAGAATTCAGAAAGAGCTAA+TGG | 0.378222 | 3.1:-44373151 | MS.gene94936:CDS |
| ATCAGATCCTCCGACATCTA+TGG | 0.391207 | 3.1:+44371761 | None:intergenic |
| CTAATGGAACCTCAAAATTC+AGG | 0.391284 | 3.1:-44373135 | MS.gene94936:CDS |
| CGTCGATCCCTTTAAGGTGT+TGG | 0.413015 | 3.1:+44373324 | None:intergenic |
| TGATTACCTCATAGTAGAAC+TGG | 0.423082 | 3.1:+44371736 | None:intergenic |
| GCTGGATCCAACACCTTAAA+GGG | 0.429902 | 3.1:-44373331 | MS.gene94936:CDS |
| TGAATCTCATCCACCGCAAA+AGG | 0.440950 | 3.1:+44371564 | None:intergenic |
| AAGGAAATGCCTGTCATGAA+TGG | 0.455995 | 3.1:-44372950 | MS.gene94936:CDS |
| AATGCATCTTGATCGTTAGT+TGG | 0.482539 | 3.1:+44371816 | None:intergenic |
| GGCGATCAATTGACACAGTT+GGG | 0.486500 | 3.1:+44371850 | None:intergenic |
| ATCAAAAGATACATCCTGAT+AGG | 0.496120 | 3.1:+44373396 | None:intergenic |
| GATCCAGCCTCTTCATCAAA+AGG | 0.496221 | 3.1:+44373346 | None:intergenic |
| TGATTTCCAGTTCTACTATG+AGG | 0.502533 | 3.1:-44371742 | MS.gene94936:intron |
| TGGCGATCAATTGACACAGT+TGG | 0.502936 | 3.1:+44371849 | None:intergenic |
| AGGAAATGCCTGTCATGAAT+GGG | 0.510485 | 3.1:-44372949 | MS.gene94936:CDS |
| TAGACACCAACATTTGATGA+TGG | 0.521160 | 3.1:-44373296 | MS.gene94936:intron |
| TTGTTTGTCCAGGGATTGGG+TGG | 0.529892 | 3.1:-44371601 | MS.gene94936:intron |
| TCCTCCGACATCTATGGCTA+CGG | 0.542667 | 3.1:+44371767 | None:intergenic |
| CGAGGTCTATTGAAAAGAGC+TGG | 0.553107 | 3.1:-44373058 | MS.gene94936:CDS |
| GGGATTGGGTGGATTTAGAC+CGG | 0.553304 | 3.1:-44371590 | MS.gene94936:CDS |
| ACCTCAATCCCATTCATGAC+AGG | 0.555433 | 3.1:+44372941 | None:intergenic |
| CATCCACCGCAAAAGGTCAC+CGG | 0.580322 | 3.1:+44371571 | None:intergenic |
| GCCTGTCATGAATGGGATTG+AGG | 0.582215 | 3.1:-44372942 | MS.gene94936:intron |
| CGTTAGTTGGAACAATCTCA+TGG | 0.602898 | 3.1:+44371829 | None:intergenic |
| TATGGCTACGGAAACAGGGT+TGG | 0.603682 | 3.1:+44371779 | None:intergenic |
| CACCGACCATCATCAAATGT+TGG | 0.604150 | 3.1:+44373290 | None:intergenic |
| CATCTATGGCTACGGAAACA+GGG | 0.614019 | 3.1:+44371775 | None:intergenic |
| GAATTAACAGCACCTACTGT+AGG | 0.626771 | 3.1:-44373109 | MS.gene94936:CDS |
| CAACACCTTAAAGGGATCGA+CGG | 0.635156 | 3.1:-44373323 | MS.gene94936:CDS |
| GCTGTAGATATTCATTGCAG+TGG | 0.642650 | 3.1:-44373001 | MS.gene94936:CDS |
| GTTTCCGTAGCCATAGATGT+CGG | 0.644554 | 3.1:-44371771 | MS.gene94936:CDS |
| AGCTTATCATCACCTACAGT+AGG | 0.667855 | 3.1:+44373097 | None:intergenic |
| TCCGTAGCCATAGATGTCGG+AGG | 0.692693 | 3.1:-44371768 | MS.gene94936:CDS |
| CTTGTTCGAATGATTCATCG+AGG | 0.717669 | 3.1:-44373076 | MS.gene94936:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTGATATTATTTTCA+TGG | - | chr3.1:44372001-44372020 | MS.gene94936:intron | 15.0% |
| !!! | TAATTTTGTTCTGTATAATA+TGG | - | chr3.1:44372132-44372151 | MS.gene94936:intron | 15.0% |
| !!! | TAATTTTGTTTGATCAAAAT+TGG | + | chr3.1:44372655-44372674 | None:intergenic | 15.0% |
| !! | TGCTCAATTCTATTTATTTA+AGG | + | chr3.1:44372335-44372354 | None:intergenic | 20.0% |
| !! | TTATACAGAACAAAATTAAC+AGG | + | chr3.1:44372130-44372149 | None:intergenic | 20.0% |
| ! | AAAAGTGAAGCTGTAAAAAA+TGG | - | chr3.1:44371945-44371964 | MS.gene94936:intron | 25.0% |
| ! | ACAAACAAAAACAACAATGT+CGG | + | chr3.1:44373363-44373382 | None:intergenic | 25.0% |
| ! | GAACAAAATTAACAGGAAAA+AGG | + | chr3.1:44372123-44372142 | None:intergenic | 25.0% |
| ! | TAGACATTTATCGACAATTA+TGG | - | chr3.1:44372241-44372260 | MS.gene94936:intron | 25.0% |
| ! | TATGACAATCAAGAAAATCA+AGG | - | chr3.1:44372877-44372896 | MS.gene94936:intron | 25.0% |
| ! | TTGATTGTCATAATCTACAA+GGG | + | chr3.1:44372869-44372888 | None:intergenic | 25.0% |
| !! | TGATATTATTTTCATGGACA+AGG | - | chr3.1:44372007-44372026 | MS.gene94936:intron | 25.0% |
| ATCAAAAGATACATCCTGAT+AGG | + | chr3.1:44371583-44371602 | None:intergenic | 30.0% | |
| CTTGATTGTCATAATCTACA+AGG | + | chr3.1:44372870-44372889 | None:intergenic | 30.0% | |
| GAAAACTATGCTCCTTAAAA+AGG | - | chr3.1:44372796-44372815 | MS.gene94936:intron | 30.0% | |
| GAGTACATAAAGCAAAAAGA+TGG | - | chr3.1:44372931-44372950 | MS.gene94936:intron | 30.0% | |
| GTCGATAAATGTCTAAATCT+GGG | + | chr3.1:44372236-44372255 | None:intergenic | 30.0% | |
| TCAACAAGCATAGATTTGAA+TGG | - | chr3.1:44372207-44372226 | MS.gene94936:intron | 30.0% | |
| TCGATAAATGTCTAAATCTG+GGG | + | chr3.1:44372235-44372254 | None:intergenic | 30.0% | |
| TGTCGATAAATGTCTAAATC+TGG | + | chr3.1:44372237-44372256 | None:intergenic | 30.0% | |
| ! | AAGATTTCCTCTCCTTTTTA+AGG | + | chr3.1:44372811-44372830 | None:intergenic | 30.0% |
| ! | AAGTTTTCATAACCTGACTT+AGG | - | chr3.1:44372545-44372564 | MS.gene94936:intron | 30.0% |
| ! | ACTAGTTTATACTACCTGAA+AGG | + | chr3.1:44372616-44372635 | None:intergenic | 30.0% |
| !! | CTTGTTGATACTTTAAAGCA+GGG | + | chr3.1:44372195-44372214 | None:intergenic | 30.0% |
| !!! | ATTGTTGTTTTTGTTTGTCC+AGG | - | chr3.1:44373365-44373384 | MS.gene94936:CDS | 30.0% |
| !!! | GATTTTAGTCTTGTTATTGC+CGG | + | chr3.1:44372490-44372509 | None:intergenic | 30.0% |
| !!! | TTGTTGTTTTTGTTTGTCCA+GGG | - | chr3.1:44373366-44373385 | MS.gene94936:CDS | 30.0% |
| !!! | TTTTGATCAGTCGTTTTTCA+GGG | - | chr3.1:44371596-44371615 | MS.gene94936:intron | 30.0% |
| AAAATCAAGGATGCAATGGT+GGG | - | chr3.1:44372890-44372909 | MS.gene94936:intron | 35.0% | |
| AATGCATCTTGATCGTTAGT+TGG | + | chr3.1:44373163-44373182 | None:intergenic | 35.0% | |
| ACAAAACTCATTCATGATGC+AGG | - | chr3.1:44373096-44373115 | MS.gene94936:CDS | 35.0% | |
| AGCAATGATACAAGACTTTC+CGG | - | chr3.1:44372468-44372487 | MS.gene94936:intron | 35.0% | |
| ATCCATCATTTGCAGTGTAA+GGG | + | chr3.1:44372978-44372997 | None:intergenic | 35.0% | |
| CAAGAAAATCAAGGATGCAA+TGG | - | chr3.1:44372886-44372905 | MS.gene94936:intron | 35.0% | |
| CAGAATTCAGAAAGAGCTAA+TGG | - | chr3.1:44371825-44371844 | MS.gene94936:CDS | 35.0% | |
| CTAATGGAACCTCAAAATTC+AGG | - | chr3.1:44371841-44371860 | MS.gene94936:CDS | 35.0% | |
| TAGAATCCATAGTATCACCT+TGG | + | chr3.1:44373029-44373048 | None:intergenic | 35.0% | |
| TAGACACCAACATTTGATGA+TGG | - | chr3.1:44371680-44371699 | MS.gene94936:intron | 35.0% | |
| TCTGTATAATATGGAAGACC+TGG | - | chr3.1:44372141-44372160 | MS.gene94936:intron | 35.0% | |
| TGAAGCTGTAAAAAATGGCA+AGG | - | chr3.1:44371950-44371969 | MS.gene94936:intron | 35.0% | |
| TGATTACCTCATAGTAGAAC+TGG | + | chr3.1:44373243-44373262 | None:intergenic | 35.0% | |
| TGATTTCCAGTTCTACTATG+AGG | - | chr3.1:44373234-44373253 | MS.gene94936:intron | 35.0% | |
| ! | TAATTCGTGCCTGAATTTTG+AGG | + | chr3.1:44371853-44371872 | None:intergenic | 35.0% |
| !! | GCTTGTTGATACTTTAAAGC+AGG | + | chr3.1:44372196-44372215 | None:intergenic | 35.0% |
| !! | TGTGTTTTTGTGTTTTTCGC+CGG | - | chr3.1:44373274-44373293 | MS.gene94936:intron | 35.0% |
| !! | TTTGTTGTTACTTGCTTTGC+AGG | + | chr3.1:44372271-44372290 | None:intergenic | 35.0% |
| !! | TTTTTGTTTGTCCAGGGATT+GGG | - | chr3.1:44373372-44373391 | MS.gene94936:CDS | 35.0% |
| !!! | CTTTTGATCAGTCGTTTTTC+AGG | - | chr3.1:44371595-44371614 | MS.gene94936:intron | 35.0% |
| AAAGGATGCTACACTCACAA+AGG | + | chr3.1:44372598-44372617 | None:intergenic | 40.0% | |
| AAGGAAATGCCTGTCATGAA+TGG | - | chr3.1:44372026-44372045 | MS.gene94936:intron | 40.0% | |
| AGCTTATCATCACCTACAGT+AGG | + | chr3.1:44371882-44371901 | None:intergenic | 40.0% | |
| AGGAAATGCCTGTCATGAAT+GGG | - | chr3.1:44372027-44372046 | MS.gene94936:intron | 40.0% | |
| ATCCATAGTATCACCTTGGA+TGG | + | chr3.1:44373025-44373044 | None:intergenic | 40.0% | |
| CAAAACGTAATGTCACAGCA+AGG | + | chr3.1:44371719-44371738 | None:intergenic | 40.0% | |
| CGTTAGTTGGAACAATCTCA+TGG | + | chr3.1:44373150-44373169 | None:intergenic | 40.0% | |
| CTATGCTCCTTAAAAAGGAG+AGG | - | chr3.1:44372801-44372820 | MS.gene94936:intron | 40.0% | |
| CTTGTTCGAATGATTCATCG+AGG | - | chr3.1:44371900-44371919 | MS.gene94936:intron | 40.0% | |
| GAAAATCAAGGATGCAATGG+TGG | - | chr3.1:44372889-44372908 | MS.gene94936:intron | 40.0% | |
| GAATTAACAGCACCTACTGT+AGG | - | chr3.1:44371867-44371886 | MS.gene94936:intron | 40.0% | |
| GATCCATCATTTGCAGTGTA+AGG | + | chr3.1:44372979-44372998 | None:intergenic | 40.0% | |
| GCTGTAGATATTCATTGCAG+TGG | - | chr3.1:44371975-44371994 | MS.gene94936:intron | 40.0% | |
| TAATATGGAAGACCTGGTTC+AGG | - | chr3.1:44372147-44372166 | MS.gene94936:intron | 40.0% | |
| TACCCTTACACTGCAAATGA+TGG | - | chr3.1:44372973-44372992 | MS.gene94936:CDS | 40.0% | |
| TCCATAGTATCACCTTGGAT+GGG | + | chr3.1:44373024-44373043 | None:intergenic | 40.0% | |
| TCTAGCAAAGAGAAATCCAG+TGG | + | chr3.1:44372767-44372786 | None:intergenic | 40.0% | |
| TGTATCATTGCTGACAAGAG+CGG | + | chr3.1:44372460-44372479 | None:intergenic | 40.0% | |
| TTAATAGCTACACCTGAACC+AGG | + | chr3.1:44372162-44372181 | None:intergenic | 40.0% | |
| TTATAATCCCAATGACGCAG+TGG | + | chr3.1:44371803-44371822 | None:intergenic | 40.0% | |
| ! | GCAACTTCCTTTTGATGAAG+AGG | - | chr3.1:44371623-44371642 | MS.gene94936:intron | 40.0% |
| ! | TGTCTGAGACGTTGAATGAT+TGG | - | chr3.1:44372406-44372425 | MS.gene94936:intron | 40.0% |
| !! | ACCTTGGATGGGTTAAAATC+CGG | + | chr3.1:44373013-44373032 | None:intergenic | 40.0% |
| !! | CACCAACATTTGATGATGGT+CGG | - | chr3.1:44371684-44371703 | MS.gene94936:intron | 40.0% |
| !! | GTTTTTGTTTGTCCAGGGAT+TGG | - | chr3.1:44373371-44373390 | MS.gene94936:CDS | 40.0% |
| !! | TGATACTTTAAAGCAGGGTG+TGG | + | chr3.1:44372190-44372209 | None:intergenic | 40.0% |
| AAGTTCCGTCGATCCCTTTA+AGG | + | chr3.1:44371661-44371680 | None:intergenic | 45.0% | |
| ACATCTATGGCTACGGAAAC+AGG | + | chr3.1:44373205-44373224 | None:intergenic | 45.0% | |
| ACCCATCCAAGGTGATACTA+TGG | - | chr3.1:44373020-44373039 | MS.gene94936:CDS | 45.0% | |
| ACCTCAATCCCATTCATGAC+AGG | + | chr3.1:44372038-44372057 | None:intergenic | 45.0% | |
| ATCAGATCCTCCGACATCTA+TGG | + | chr3.1:44373218-44373237 | None:intergenic | 45.0% | |
| ATGAGATGCTAACTCTGCTG+TGG | - | chr3.1:44372354-44372373 | MS.gene94936:intron | 45.0% | |
| CAACACCTTAAAGGGATCGA+CGG | - | chr3.1:44371653-44371672 | MS.gene94936:intron | 45.0% | |
| CACCGACCATCATCAAATGT+TGG | + | chr3.1:44371689-44371708 | None:intergenic | 45.0% | |
| CATCTATGGCTACGGAAACA+GGG | + | chr3.1:44373204-44373223 | None:intergenic | 45.0% | |
| CCTTGAACACGAAAATCCAC+TGG | - | chr3.1:44372748-44372767 | MS.gene94936:intron | 45.0% | |
| CGAGGTCTATTGAAAAGAGC+TGG | - | chr3.1:44371918-44371937 | MS.gene94936:intron | 45.0% | |
| GATAACTCGATGCCTAAGTC+AGG | + | chr3.1:44372560-44372579 | None:intergenic | 45.0% | |
| GATCCAGCCTCTTCATCAAA+AGG | + | chr3.1:44371633-44371652 | None:intergenic | 45.0% | |
| GATGGATCATGTGATGCATC+CGG | - | chr3.1:44372991-44373010 | MS.gene94936:CDS | 45.0% | |
| GCTGGATCCAACACCTTAAA+GGG | - | chr3.1:44371645-44371664 | MS.gene94936:intron | 45.0% | |
| GGCGATCAATTGACACAGTT+GGG | + | chr3.1:44373129-44373148 | None:intergenic | 45.0% | |
| GGTGTGAGCATAAGAAGAGT+AGG | - | chr3.1:44372376-44372395 | MS.gene94936:intron | 45.0% | |
| GTTTCCGTAGCCATAGATGT+CGG | - | chr3.1:44373205-44373224 | MS.gene94936:intron | 45.0% | |
| TGAGATGCTAACTCTGCTGT+GGG | - | chr3.1:44372355-44372374 | MS.gene94936:intron | 45.0% | |
| TGGCGATCAATTGACACAGT+TGG | + | chr3.1:44373130-44373149 | None:intergenic | 45.0% | |
| TGTGAGTGTAGCATCCTTTC+AGG | - | chr3.1:44372599-44372618 | MS.gene94936:intron | 45.0% | |
| ! | CTTCCTTTTGATGAAGAGGC+TGG | - | chr3.1:44371627-44371646 | MS.gene94936:intron | 45.0% |
| ! | TTTAGACCGGTGACCTTTTG+CGG | - | chr3.1:44373399-44373418 | MS.gene94936:CDS | 45.0% |
| !! | CCAGTGGATTTTCGTGTTCA+AGG | + | chr3.1:44372751-44372770 | None:intergenic | 45.0% |
| !! | TCCGGATTTTAACCCATCCA+AGG | - | chr3.1:44373009-44373028 | MS.gene94936:CDS | 45.0% |
| AGTGTGATCCACTGCGTCAT+TGG | - | chr3.1:44371792-44371811 | MS.gene94936:CDS | 50.0% | |
| CCGACGAAACGAAACACAAC+CGG | + | chr3.1:44373296-44373315 | None:intergenic | 50.0% | |
| CCGGTTGTGTTTCGTTTCGT+CGG | - | chr3.1:44373293-44373312 | MS.gene94936:intron | 50.0% | |
| CTGCAAAAACAAAAGCCCGC+CGG | + | chr3.1:44373336-44373355 | None:intergenic | 50.0% | |
| GCCTGTCATGAATGGGATTG+AGG | - | chr3.1:44372034-44372053 | MS.gene94936:intron | 50.0% | |
| GGCTGGATCCAACACCTTAA+AGG | - | chr3.1:44371644-44371663 | MS.gene94936:intron | 50.0% | |
| GTCTAAATCCACCCAATCCC+TGG | + | chr3.1:44373386-44373405 | None:intergenic | 50.0% | |
| GTGTGATCCACTGCGTCATT+GGG | - | chr3.1:44371793-44371812 | MS.gene94936:CDS | 50.0% | |
| TATGGCTACGGAAACAGGGT+TGG | + | chr3.1:44373200-44373219 | None:intergenic | 50.0% | |
| TCCTCCGACATCTATGGCTA+CGG | + | chr3.1:44373212-44373231 | None:intergenic | 50.0% | |
| TTGTTTGTCCAGGGATTGGG+TGG | - | chr3.1:44373375-44373394 | MS.gene94936:CDS | 50.0% | |
| ! | GGGATTGGGTGGATTTAGAC+CGG | - | chr3.1:44373386-44373405 | MS.gene94936:CDS | 50.0% |
| !! | AGGATGCAATGGTGGGCTAA+TGG | - | chr3.1:44372897-44372916 | MS.gene94936:intron | 50.0% |
| !! | CGTCGATCCCTTTAAGGTGT+TGG | + | chr3.1:44371655-44371674 | None:intergenic | 50.0% |
| CATCCACCGCAAAAGGTCAC+CGG | + | chr3.1:44373408-44373427 | None:intergenic | 55.0% | |
| TCCGTAGCCATAGATGTCGG+AGG | - | chr3.1:44373208-44373227 | MS.gene94936:intron | 55.0% | |
| !!! | CGGCGGGCTTTTGTTTTTGC+AGG | - | chr3.1:44373334-44373353 | MS.gene94936:CDS | 55.0% |
| ! | AGACCGGTGACCTTTTGCGG+TGG | - | chr3.1:44373402-44373421 | MS.gene94936:CDS | 60.0% |
| ! | GGTTGCCGTCTGTTTGCTGC+CGG | - | chr3.1:44373314-44373333 | MS.gene94936:CDS | 60.0% |
| ! | TGCCGTCTGTTTGCTGCCGG+CGG | - | chr3.1:44373317-44373336 | MS.gene94936:CDS | 65.0% |
| GCCCGCCGGCAGCAAACAGA+CGG | + | chr3.1:44373322-44373341 | None:intergenic | 70.0% | |
| ! | GCCGTCTGTTTGCTGCCGGC+GGG | - | chr3.1:44373318-44373337 | MS.gene94936:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44371570 | 44373428 | 44371570 | ID=MS.gene94936 |
| chr3.1 | mRNA | 44371570 | 44373428 | 44371570 | ID=MS.gene94936.t1;Parent=MS.gene94936 |
| chr3.1 | exon | 44373297 | 44373428 | 44373297 | ID=MS.gene94936.t1.exon1;Parent=MS.gene94936.t1 |
| chr3.1 | CDS | 44373297 | 44373428 | 44373297 | ID=cds.MS.gene94936.t1;Parent=MS.gene94936.t1 |
| chr3.1 | exon | 44372943 | 44373170 | 44372943 | ID=MS.gene94936.t1.exon2;Parent=MS.gene94936.t1 |
| chr3.1 | CDS | 44372943 | 44373170 | 44372943 | ID=cds.MS.gene94936.t1;Parent=MS.gene94936.t1 |
| chr3.1 | exon | 44371743 | 44371880 | 44371743 | ID=MS.gene94936.t1.exon3;Parent=MS.gene94936.t1 |
| chr3.1 | CDS | 44371743 | 44371880 | 44371743 | ID=cds.MS.gene94936.t1;Parent=MS.gene94936.t1 |
| chr3.1 | exon | 44371570 | 44371611 | 44371570 | ID=MS.gene94936.t1.exon4;Parent=MS.gene94936.t1 |
| chr3.1 | CDS | 44371570 | 44371611 | 44371570 | ID=cds.MS.gene94936.t1;Parent=MS.gene94936.t1 |
| Gene Sequence |
| Protein sequence |
