AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94982.t1 MTR_1g046680 98.770 244 3 0 1 244 1 244 0.0 498
MS.gene94982.t1 MTR_5g007600 71.489 235 52 3 1 235 1 220 7.94e-105 306
MS.gene94982.t1 MTR_5g007600 76.147 109 26 0 136 244 223 331 1.09e-56 184
MS.gene94982.t1 MTR_8g013950 47.340 188 84 7 63 241 114 295 3.84e-39 139
MS.gene94982.t1 MTR_8g076340 72.000 75 21 0 170 244 216 290 5.15e-36 129
MS.gene94982.t1 MTR_3g109760 44.554 202 69 8 63 241 95 276 2.14e-35 128
MS.gene94982.t1 MTR_2g094600 46.584 161 54 4 99 236 129 280 2.14e-35 128
MS.gene94982.t1 MTR_1g006650 43.810 210 71 7 63 241 110 303 5.96e-35 127
MS.gene94982.t1 MTR_3g117380 36.260 262 122 9 6 241 56 298 1.44e-34 126
MS.gene94982.t1 MTR_4g071590 50.000 140 44 5 124 239 141 278 2.77e-33 122
MS.gene94982.t1 MTR_4g471590 50.000 140 44 5 124 239 141 278 2.77e-33 122
MS.gene94982.t1 MTR_5g021340 71.233 73 21 0 172 244 300 372 3.24e-33 124
MS.gene94982.t1 MTR_6g032830 76.471 68 16 0 171 238 191 258 6.94e-33 120
MS.gene94982.t1 MTR_1g094930 70.130 77 21 1 160 236 137 211 7.39e-33 119
MS.gene94982.t1 MTR_7g085410 74.648 71 18 0 166 236 182 252 8.44e-33 120
MS.gene94982.t1 MTR_1g094930 70.130 77 21 1 160 236 232 306 2.79e-32 120
MS.gene94982.t1 MTR_4g058910 74.627 67 17 0 172 238 314 380 1.25e-31 120
MS.gene94982.t1 MTR_1g116010 71.642 67 19 0 170 236 162 228 1.76e-31 116
MS.gene94982.t1 MTR_7g446110 55.224 67 28 1 172 238 187 251 4.92e-19 83.6
MS.gene94982.t1 MTR_7g445980 54.286 70 29 2 170 238 31 98 6.04e-18 76.6
MS.gene94982.t1 MTR_7g445950 47.126 87 44 2 149 233 95 181 1.22e-17 78.2
MS.gene94982.t1 MTR_7g446070 46.739 92 45 3 149 238 107 196 2.45e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94982.t1 AT3G24050 80.000 75 15 0 170 244 192 266 2.39e-40 140
MS.gene94982.t1 AT4G32890 39.636 275 98 11 7 241 20 266 6.27e-38 135
MS.gene94982.t1 AT4G36240 38.340 253 104 6 6 239 12 231 6.77e-36 127
MS.gene94982.t1 AT4G34680 46.479 142 63 3 111 242 112 250 4.77e-35 126
MS.gene94982.t1 AT4G34680 46.479 142 63 3 111 242 112 250 4.77e-35 126
MS.gene94982.t1 AT5G66320 79.412 68 14 0 172 239 249 316 8.54e-35 127
MS.gene94982.t1 AT5G66320 79.412 68 14 0 172 239 249 316 8.54e-35 127
MS.gene94982.t1 AT5G25830 77.143 70 16 0 172 241 219 288 1.19e-33 124
MS.gene94982.t1 AT3G51080 72.603 73 20 0 172 244 221 293 2.66e-33 122
MS.gene94982.t1 AT3G60530 75.362 69 17 0 171 239 157 225 2.79e-33 120
MS.gene94982.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene94982.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene94982.t1 AT1G08010 72.464 69 19 0 170 238 218 286 2.74e-32 120
MS.gene94982.t1 AT2G45050 75.000 68 17 0 172 239 179 246 3.73e-32 118
MS.gene94982.t1 AT1G08000 64.634 82 29 0 157 238 203 284 6.80e-32 119
MS.gene94982.t1 AT1G08000 64.634 82 29 0 157 238 203 284 6.80e-32 119
MS.gene94982.t1 AT3G54810 75.000 68 17 0 172 239 229 296 6.38e-31 117
MS.gene94982.t1 AT3G54810 75.000 68 17 0 172 239 229 296 6.38e-31 117
MS.gene94982.t1 AT3G45170 60.294 68 27 0 172 239 115 182 2.32e-27 104
MS.gene94982.t1 AT2G28340 66.667 63 21 0 174 236 193 255 9.56e-26 102

Find 86 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTTCTCTTTGGAAGTTT+TGG 0.158917 1.1:+29559776 None:intergenic
CTTGTGCTGTTCTCGAGCTT+TGG 0.240759 1.1:+29559957 None:intergenic
TTGTGCTGTTCTCGAGCTTT+GGG 0.269770 1.1:+29559958 None:intergenic
GGTTTGTTTCACTTTCTCTT+TGG 0.274207 1.1:+29559767 None:intergenic
AGTGAAGGAAAGGCTTTCTT+AGG 0.280723 1.1:+29560660 None:intergenic
GTCCAACAAAGATGCATTTC+CGG 0.285678 1.1:-29560045 MS.gene94982:CDS
GACATTTCCTCCCAATGGTT+GGG 0.293078 1.1:+29559745 None:intergenic
CTATTTGCAGGACGGTATTC+AGG 0.302785 1.1:+29559618 None:intergenic
CGAAAAGTTGGGCTATTTGC+AGG 0.311001 1.1:+29559606 None:intergenic
CATGCATTACAAAGTGTCTT+TGG 0.315428 1.1:+29559672 None:intergenic
CAAAGTGTCTTTGGACCATT+TGG 0.337970 1.1:+29559681 None:intergenic
GAAGGTGGATCACTGCATTC+TGG 0.356189 1.1:+29560633 None:intergenic
GTTGTTTCCACGGGAATTGT+AGG 0.366200 1.1:+29559805 None:intergenic
TGGTTCTGTGGACGACCTCT+TGG 0.388206 1.1:-29560724 MS.gene94982:CDS
ACTTAAGAGGGTAATGCTAT+TGG 0.397395 1.1:+29559911 None:intergenic
GATGAGGAAGCAGAAGGGAA+TGG 0.399465 1.1:-29559544 MS.gene94982:CDS
TTTGTAATGCATGTGGGGTT+AGG 0.415099 1.1:-29559662 MS.gene94982:CDS
ACTTACAGAAAGTGAATTGA+TGG 0.418526 1.1:+29560584 None:intergenic
CCACGGGAATTGTAGGTTTG+AGG 0.425374 1.1:+29559812 None:intergenic
AAGCAGAAGGGAATGGGAAC+GGG 0.428545 1.1:-29559537 MS.gene94982:CDS
TGTGATTGTAGCCACTTAAG+AGG 0.429240 1.1:+29559898 None:intergenic
AGCCGGAAATGCATCTTTGT+TGG 0.438765 1.1:+29560043 None:intergenic
TGCATGTCACTGCGAAAAGT+TGG 0.440834 1.1:+29559594 None:intergenic
ACATTTCCTCCCAATGGTTG+GGG 0.449081 1.1:+29559746 None:intergenic
ATTTGATGCTTCAAAAGATC+CGG 0.450692 1.1:+29559987 None:intergenic
TGAGTTGTCCTGTATTCAAC+CGG 0.452850 1.1:-29560006 MS.gene94982:CDS
CAAAAGATCCGGTTGAATAC+AGG 0.453486 1.1:+29559998 None:intergenic
GACTTGCTCCGTGCACGGAC+AGG 0.458205 1.1:+29559867 None:intergenic
AATAGCATTACCCTCTTAAG+TGG 0.460066 1.1:-29559909 MS.gene94982:CDS
TTCGCTCAATCCATTGGCCC+TGG 0.469600 1.1:-29560613 MS.gene94982:CDS
CCAGGAGGAGGTTGCAGAAG+AGG 0.477241 1.1:-29560081 MS.gene94982:intron
GTGGAGATGAGGAAGCAGAA+GGG 0.478182 1.1:-29559549 MS.gene94982:CDS
TTGCAGAAGAGGAGCTTGAA+TGG 0.482772 1.1:-29560070 MS.gene94982:CDS
ATGAGGAAGCAGAAGGGAAT+GGG 0.486460 1.1:-29559543 MS.gene94982:CDS
GTGAAACAAACCCCAACCAT+TGG 0.493226 1.1:-29559756 MS.gene94982:CDS
TTGGTACTCGGTTGTTTCCA+CGG 0.494137 1.1:+29559795 None:intergenic
GCATGTCACTGCGAAAAGTT+GGG 0.502991 1.1:+29559595 None:intergenic
TGGTACTCGGTTGTTTCCAC+GGG 0.505676 1.1:+29559796 None:intergenic
CAATGGCGTGCAGGTCCAAA+TGG 0.508669 1.1:-29559696 MS.gene94982:CDS
TTGGATTTCTCATCTGACAT+AGG 0.514457 1.1:-29560705 MS.gene94982:CDS
AGTGGAGATGAGGAAGCAGA+AGG 0.514467 1.1:-29559550 MS.gene94982:CDS
TTCTGGTTTGAGTGAAGGAA+AGG 0.515866 1.1:+29560650 None:intergenic
TGACATTTCCTCCCAATGGT+TGG 0.516568 1.1:+29559744 None:intergenic
TGTGGGGTTAGGTATAAGTC+TGG 0.520333 1.1:-29559651 MS.gene94982:CDS
TCCACCTTCGCTCAATCCAT+TGG 0.521499 1.1:-29560619 MS.gene94982:CDS
GATGGAGGCCCTTGGTTCTG+TGG 0.522422 1.1:-29560736 MS.gene94982:CDS
TGAAACAAACCCCAACCATT+GGG 0.524385 1.1:-29559755 MS.gene94982:CDS
GTGAATTGATGGGATCATCC+AGG 0.528433 1.1:+29560595 None:intergenic
ATGGGATCATCCAGGGCCAA+TGG 0.530010 1.1:+29560603 None:intergenic
CTGCATTCTGGTTTGAGTGA+AGG 0.532294 1.1:+29560645 None:intergenic
TCATCTCCACTACTTTCCTG+TGG 0.533667 1.1:+29559562 None:intergenic
TCTCGTAGCAAGCCTCGCCT+TGG 0.534627 1.1:-29559846 MS.gene94982:CDS
GATACTCCACAATGGCGTGC+AGG 0.539263 1.1:-29559705 MS.gene94982:CDS
TCAACAAACGTTTCAACAGC+CGG 0.539345 1.1:+29560026 None:intergenic
TTGAGGCATCAGCAAGGCCA+AGG 0.541565 1.1:+29559829 None:intergenic
GAAGCAGAAGGGAATGGGAA+CGG 0.544276 1.1:-29559538 MS.gene94982:CDS
GCCAATGGATTGAGCGAAGG+TGG 0.546210 1.1:+29560618 None:intergenic
CATCTCCACTACTTTCCTGT+GGG 0.557649 1.1:+29559563 None:intergenic
TGAAGTTCCCTGTCCGTGCA+CGG 0.571256 1.1:-29559875 MS.gene94982:CDS
TTTGGACCTGCACGCCATTG+TGG 0.572595 1.1:+29559699 None:intergenic
ACTTGCTCCGTGCACGGACA+GGG 0.574860 1.1:+29559868 None:intergenic
TACGAGACTTGCTCCGTGCA+CGG 0.578328 1.1:+29559862 None:intergenic
ATGATGACATTTCCTCCCAA+TGG 0.580868 1.1:+29559740 None:intergenic
ACAGGAAAGTAGTGGAGATG+AGG 0.582547 1.1:-29559560 MS.gene94982:CDS
TGTGCTGTTCTCGAGCTTTG+GGG 0.589584 1.1:+29559959 None:intergenic
TGAATTGATGGGATCATCCA+GGG 0.600445 1.1:+29560596 None:intergenic
GCATCAGCAAGGCCAAGGCG+AGG 0.601336 1.1:+29559834 None:intergenic
GACACTTTGTAATGCATGTG+GGG 0.601729 1.1:-29559667 MS.gene94982:CDS
AAGACACTTTGTAATGCATG+TGG 0.602236 1.1:-29559669 MS.gene94982:CDS
TAATTCCCACAGGAAAGTAG+TGG 0.604924 1.1:-29559568 MS.gene94982:CDS
GAGGTCGTCCACAGAACCAA+GGG 0.608143 1.1:+29560728 None:intergenic
AGACACTTTGTAATGCATGT+GGG 0.608576 1.1:-29559668 MS.gene94982:CDS
CTTACAGAAAGTGAATTGAT+GGG 0.611737 1.1:+29560585 None:intergenic
GTGATTGTAGCCACTTAAGA+GGG 0.622729 1.1:+29559899 None:intergenic
ACATGCATTCTAATTCCCAC+AGG 0.630282 1.1:-29559578 MS.gene94982:CDS
AACAAACCCCAACCATTGGG+AGG 0.635541 1.1:-29559752 MS.gene94982:CDS
AGGGCCAATGGATTGAGCGA+AGG 0.639769 1.1:+29560615 None:intergenic
AGAGGTCGTCCACAGAACCA+AGG 0.642044 1.1:+29560727 None:intergenic
GGGAGGAAATGTCATCATTG+TGG 0.646984 1.1:-29559735 MS.gene94982:CDS
CCTCAAACCTACAATTCCCG+TGG 0.649034 1.1:-29559812 MS.gene94982:CDS
GACGGTATTCAGGTACAAGT+CGG 0.649278 1.1:+29559628 None:intergenic
AAGTTGGGCTATTTGCAGGA+CGG 0.658089 1.1:+29559610 None:intergenic
TTTCTCATCTGACATAGGCG+AGG 0.680937 1.1:-29560700 MS.gene94982:CDS
GTAGGTTTGAGGCATCAGCA+AGG 0.716777 1.1:+29559823 None:intergenic
TGTCAGATGAGAAATCCAAG+AGG 0.747403 1.1:+29560709 None:intergenic
GAGTTGATGATACTCCACAA+TGG 0.801331 1.1:-29559713 MS.gene94982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AACTCATAAGTATGGAAAAA+AGG + chr1.1:29560133-29560152 None:intergenic 25.0%
! AAGGAAAACAAGTAAAAATC+TGG + chr1.1:29559883-29559902 None:intergenic 25.0%
!!! ATCAAGCAAGTATTTTGAAA+AGG + chr1.1:29559725-29559744 None:intergenic 25.0%
!!! CAAGTATTTTGAAAAGGTTA+AGG + chr1.1:29559719-29559738 None:intergenic 25.0%
ACTTACAGAAAGTGAATTGA+TGG + chr1.1:29559687-29559706 None:intergenic 30.0%
ATTTGATGCTTCAAAAGATC+CGG + chr1.1:29560284-29560303 None:intergenic 30.0%
CACTAGCTAATATTCTACTT+TGG + chr1.1:29559857-29559876 None:intergenic 30.0%
CATGAAAACTTTGATGCAAA+CGG + chr1.1:29559974-29559993 None:intergenic 30.0%
CTTACAGAAAGTGAATTGAT+GGG + chr1.1:29559686-29559705 None:intergenic 30.0%
CTTCACATAACTCATAAGTA+TGG + chr1.1:29560141-29560160 None:intergenic 30.0%
TCCTTTAAGCATCAATGTAT+TGG - chr1.1:29559898-29559917 MS.gene94982:CDS 30.0%
TTCACTTTCTGTAAGTTTGA+CGG - chr1.1:29559691-29559710 MS.gene94982:CDS 30.0%
!!! TATCTAGTTTTGACTTGTTG+AGG - chr1.1:29559749-29559768 MS.gene94982:CDS 30.0%
AAGACACTTTGTAATGCATG+TGG - chr1.1:29560599-29560618 MS.gene94982:CDS 35.0%
AATAGCATTACCCTCTTAAG+TGG - chr1.1:29560359-29560378 MS.gene94982:intron 35.0%
ACTTAAGAGGGTAATGCTAT+TGG + chr1.1:29560360-29560379 None:intergenic 35.0%
AGACACTTTGTAATGCATGT+GGG - chr1.1:29560600-29560619 MS.gene94982:CDS 35.0%
GCCAATACATTGATGCTTAA+AGG + chr1.1:29559902-29559921 None:intergenic 35.0%
TACTTGTGATCACTGTTTCA+TGG - chr1.1:29559994-29560013 MS.gene94982:CDS 35.0%
TCCTGGAACATGAAAATAAG+CGG + chr1.1:29560173-29560192 None:intergenic 35.0%
TTGGATTTCTCATCTGACAT+AGG - chr1.1:29559563-29559582 MS.gene94982:CDS 35.0%
! AGCATCAATGTATTGGCATT+TGG - chr1.1:29559905-29559924 MS.gene94982:CDS 35.0%
! CATGCATTACAAAGTGTCTT+TGG + chr1.1:29560599-29560618 None:intergenic 35.0%
! GGTTTGTTTCACTTTCTCTT+TGG + chr1.1:29560504-29560523 None:intergenic 35.0%
!! CACTTTCTCTTTGGAAGTTT+TGG + chr1.1:29560495-29560514 None:intergenic 35.0%
!! TCTTTGGAAGTTTTGGTACT+CGG + chr1.1:29560488-29560507 None:intergenic 35.0%
ACATGCATTCTAATTCCCAC+AGG - chr1.1:29560690-29560709 MS.gene94982:CDS 40.0%
AGTGAAGGAAAGGCTTTCTT+AGG + chr1.1:29559611-29559630 None:intergenic 40.0%
ATGATGACATTTCCTCCCAA+TGG + chr1.1:29560531-29560550 None:intergenic 40.0%
CAAAAGATCCGGTTGAATAC+AGG + chr1.1:29560273-29560292 None:intergenic 40.0%
GACACTTTGTAATGCATGTG+GGG - chr1.1:29560601-29560620 MS.gene94982:CDS 40.0%
GGAATTCCTCAAGTAAACTC+AGG + chr1.1:29560112-29560131 None:intergenic 40.0%
GTCCAACAAAGATGCATTTC+CGG - chr1.1:29560223-29560242 MS.gene94982:intron 40.0%
GTGATTGTAGCCACTTAAGA+GGG + chr1.1:29560372-29560391 None:intergenic 40.0%
TAATTCCCACAGGAAAGTAG+TGG - chr1.1:29560700-29560719 MS.gene94982:CDS 40.0%
TCAACAAACGTTTCAACAGC+CGG + chr1.1:29560245-29560264 None:intergenic 40.0%
TGAAACAAACCCCAACCATT+GGG - chr1.1:29560513-29560532 MS.gene94982:intron 40.0%
TGAATGCCTGAGTTTACTTG+AGG - chr1.1:29560103-29560122 MS.gene94982:intron 40.0%
TGAATTGATGGGATCATCCA+GGG + chr1.1:29559675-29559694 None:intergenic 40.0%
TGAGTTGTCCTGTATTCAAC+CGG - chr1.1:29560262-29560281 MS.gene94982:intron 40.0%
TGTCAGATGAGAAATCCAAG+AGG + chr1.1:29559562-29559581 None:intergenic 40.0%
TGTGATTGTAGCCACTTAAG+AGG + chr1.1:29560373-29560392 None:intergenic 40.0%
TTTGTAATGCATGTGGGGTT+AGG - chr1.1:29560606-29560625 MS.gene94982:CDS 40.0%
! CAAAGTGTCTTTGGACCATT+TGG + chr1.1:29560590-29560609 None:intergenic 40.0%
! TATTTTCATGTTCCAGGAGG+AGG - chr1.1:29560175-29560194 MS.gene94982:intron 40.0%
!! GAGTTGATGATACTCCACAA+TGG - chr1.1:29560555-29560574 MS.gene94982:intron 40.0%
!! GCTTATTTTCATGTTCCAGG+AGG - chr1.1:29560172-29560191 MS.gene94982:intron 40.0%
!! TTCTGGTTTGAGTGAAGGAA+AGG + chr1.1:29559621-29559640 None:intergenic 40.0%
AAGTTGGGCTATTTGCAGGA+CGG + chr1.1:29560661-29560680 None:intergenic 45.0%
ACATTTCCTCCCAATGGTTG+GGG + chr1.1:29560525-29560544 None:intergenic 45.0%
AGCCGGAAATGCATCTTTGT+TGG + chr1.1:29560228-29560247 None:intergenic 45.0%
ATGAGGAAGCAGAAGGGAAT+GGG - chr1.1:29560725-29560744 MS.gene94982:CDS 45.0%
CATCTCCACTACTTTCCTGT+GGG + chr1.1:29560708-29560727 None:intergenic 45.0%
CGAAAAGTTGGGCTATTTGC+AGG + chr1.1:29560665-29560684 None:intergenic 45.0%
CTATTTGCAGGACGGTATTC+AGG + chr1.1:29560653-29560672 None:intergenic 45.0%
GACATTTCCTCCCAATGGTT+GGG + chr1.1:29560526-29560545 None:intergenic 45.0%
GACGGTATTCAGGTACAAGT+CGG + chr1.1:29560643-29560662 None:intergenic 45.0%
GCATGTCACTGCGAAAAGTT+GGG + chr1.1:29560676-29560695 None:intergenic 45.0%
GGGAGGAAATGTCATCATTG+TGG - chr1.1:29560533-29560552 MS.gene94982:intron 45.0%
GTGAAACAAACCCCAACCAT+TGG - chr1.1:29560512-29560531 MS.gene94982:intron 45.0%
GTGAATTGATGGGATCATCC+AGG + chr1.1:29559676-29559695 None:intergenic 45.0%
GTTTCATGGTTTCCATGTCG+TGG - chr1.1:29560008-29560027 MS.gene94982:CDS 45.0%
TCATCTCCACTACTTTCCTG+TGG + chr1.1:29560709-29560728 None:intergenic 45.0%
TGACATTTCCTCCCAATGGT+TGG + chr1.1:29560527-29560546 None:intergenic 45.0%
TGCATGTCACTGCGAAAAGT+TGG + chr1.1:29560677-29560696 None:intergenic 45.0%
TGTGGGGTTAGGTATAAGTC+TGG - chr1.1:29560617-29560636 MS.gene94982:CDS 45.0%
TTGCAGAAGAGGAGCTTGAA+TGG - chr1.1:29560198-29560217 MS.gene94982:intron 45.0%
TTTCTCATCTGACATAGGCG+AGG - chr1.1:29559568-29559587 MS.gene94982:CDS 45.0%
! ACAGGAAAGTAGTGGAGATG+AGG - chr1.1:29560708-29560727 MS.gene94982:CDS 45.0%
! GTTGTTTCCACGGGAATTGT+AGG + chr1.1:29560466-29560485 None:intergenic 45.0%
! TTGGTACTCGGTTGTTTCCA+CGG + chr1.1:29560476-29560495 None:intergenic 45.0%
! TTGTGCTGTTCTCGAGCTTT+GGG + chr1.1:29560313-29560332 None:intergenic 45.0%
!! CTGCATTCTGGTTTGAGTGA+AGG + chr1.1:29559626-29559645 None:intergenic 45.0%
!! GCCGCTTATTTTCATGTTCC+AGG - chr1.1:29560169-29560188 MS.gene94982:intron 45.0%
AACAAACCCCAACCATTGGG+AGG - chr1.1:29560516-29560535 MS.gene94982:intron 50.0%
AAGCAGAAGGGAATGGGAAC+GGG - chr1.1:29560731-29560750 MS.gene94982:CDS 50.0%
ACCGCAGGCACTAACAATCT+CGG + chr1.1:29559935-29559954 None:intergenic 50.0%
AGTGGAGATGAGGAAGCAGA+AGG - chr1.1:29560718-29560737 MS.gene94982:CDS 50.0%
CCACGGGAATTGTAGGTTTG+AGG + chr1.1:29560459-29560478 None:intergenic 50.0%
CCTCAAACCTACAATTCCCG+TGG - chr1.1:29560456-29560475 MS.gene94982:intron 50.0%
GAAGCAGAAGGGAATGGGAA+CGG - chr1.1:29560730-29560749 MS.gene94982:CDS 50.0%
GAAGGTGGATCACTGCATTC+TGG + chr1.1:29559638-29559657 None:intergenic 50.0%
GATGAGGAAGCAGAAGGGAA+TGG - chr1.1:29560724-29560743 MS.gene94982:CDS 50.0%
GTGGAGATGAGGAAGCAGAA+GGG - chr1.1:29560719-29560738 MS.gene94982:CDS 50.0%
TCCACCTTCGCTCAATCCAT+TGG - chr1.1:29559649-29559668 MS.gene94982:CDS 50.0%
TCCGAGATTGTTAGTGCCTG+CGG - chr1.1:29559931-29559950 MS.gene94982:CDS 50.0%
! CTTGTGCTGTTCTCGAGCTT+TGG + chr1.1:29560314-29560333 None:intergenic 50.0%
! GTAGGTTTGAGGCATCAGCA+AGG + chr1.1:29560448-29560467 None:intergenic 50.0%
! TGGTACTCGGTTGTTTCCAC+GGG + chr1.1:29560475-29560494 None:intergenic 50.0%
! TGTGCTGTTCTCGAGCTTTG+GGG + chr1.1:29560312-29560331 None:intergenic 50.0%
AGAGATGCAGCTCCACGACA+TGG + chr1.1:29560023-29560042 None:intergenic 55.0%
AGAGGTCGTCCACAGAACCA+AGG + chr1.1:29559544-29559563 None:intergenic 55.0%
ATGGGATCATCCAGGGCCAA+TGG + chr1.1:29559668-29559687 None:intergenic 55.0%
CAATGGCGTGCAGGTCCAAA+TGG - chr1.1:29560572-29560591 MS.gene94982:intron 55.0%
GAGGTCGTCCACAGAACCAA+GGG + chr1.1:29559543-29559562 None:intergenic 55.0%
GATACTCCACAATGGCGTGC+AGG - chr1.1:29560563-29560582 MS.gene94982:intron 55.0%
TGAAGTTCCCTGTCCGTGCA+CGG - chr1.1:29560393-29560412 MS.gene94982:intron 55.0%
TTCGCTCAATCCATTGGCCC+TGG - chr1.1:29559655-29559674 MS.gene94982:CDS 55.0%
TTTGGACCTGCACGCCATTG+TGG + chr1.1:29560572-29560591 None:intergenic 55.0%
! GAATCTGTCGTTTGCACCGC+AGG + chr1.1:29559950-29559969 None:intergenic 55.0%
! TACGAGACTTGCTCCGTGCA+CGG + chr1.1:29560409-29560428 None:intergenic 55.0%
! TGGTTCTGTGGACGACCTCT+TGG - chr1.1:29559544-29559563 MS.gene94982:CDS 55.0%
! TTGAGGCATCAGCAAGGCCA+AGG + chr1.1:29560442-29560461 None:intergenic 55.0%
!! AGGGCCAATGGATTGAGCGA+AGG + chr1.1:29559656-29559675 None:intergenic 55.0%
!! GCCAATGGATTGAGCGAAGG+TGG + chr1.1:29559653-29559672 None:intergenic 55.0%
ACTTGCTCCGTGCACGGACA+GGG + chr1.1:29560403-29560422 None:intergenic 60.0%
CCAGGAGGAGGTTGCAGAAG+AGG - chr1.1:29560187-29560206 MS.gene94982:intron 60.0%
CCTCTTCTGCAACCTCCTCC+TGG + chr1.1:29560190-29560209 None:intergenic 60.0%
TCTCGTAGCAAGCCTCGCCT+TGG - chr1.1:29560422-29560441 MS.gene94982:intron 60.0%
GCATCAGCAAGGCCAAGGCG+AGG + chr1.1:29560437-29560456 None:intergenic 65.0%
! GACTTGCTCCGTGCACGGAC+AGG + chr1.1:29560404-29560423 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 29559533 29560757 29559533 ID=MS.gene94982
chr1.1 mRNA 29559533 29560757 29559533 ID=MS.gene94982.t1;Parent=MS.gene94982
chr1.1 exon 29560590 29560757 29560590 ID=MS.gene94982.t1.exon1;Parent=MS.gene94982.t1
chr1.1 CDS 29560590 29560757 29560590 ID=cds.MS.gene94982.t1;Parent=MS.gene94982.t1
chr1.1 exon 29559533 29560099 29559533 ID=MS.gene94982.t1.exon2;Parent=MS.gene94982.t1
chr1.1 CDS 29559533 29560099 29559533 ID=cds.MS.gene94982.t1;Parent=MS.gene94982.t1
Gene Sequence

>MS.gene94982

ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGCGAGGATGATGATGATGACAAACCTAAGAAAGCCTTTCCTTCACTCAAACCAGAATGCAGTGATCCACCTTCGCTCAATCCATTGGCCCTGGATGATCCCATCAATTCACTTTCTGTAAGTTTGACGGTTCCTTAACCTTTTCAAAATACTTGCTTGATTTTTTATCTAGTTTTGACTTGTTGAGGTGTGAGCATGAAAGCGAAAGCATGTGTGAATTATGATTTGTTTTGAATCAATTAGAATTTTGATATATTATATTGTTCTTGTCCAAAGTAGAATATTAGCTAGTGTTTCCAGATTTTTACTTGTTTTCCTTTAAGCATCAATGTATTGGCATTTGGAATTCCGAGATTGTTAGTGCCTGCGGTGCAAACGACAGATTCTCCGTTTGCATCAAAGTTTTCATGTACTTGTGATCACTGTTTCATGGTTTCCATGTCGTGGAGCTGCATCTCTCAGCGTGAATACTAATTTCTTGATCGAATGTTTGTTGTGTCGTTGACTTGTTGCATCAGTTGAATGCCTGAGTTTACTTGAGGAATTCCTTTTTTCCATACTTATGAGTTATGTGAAGTTTAATGTGCCGCTTATTTTCATGTTCCAGGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACGTTTGTTGAGTTGTCCTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAAAGCTCGAGAACAGCACAAGCAGCAGCAACAGCAATAACAGTTCCAATAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTACAATTCCCGTGGAAACAACCGAGTACCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACCATTGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACATGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAACGGGTTGA
Protein sequence

>MS.gene94982.t1

MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLKPECSDPPSLNPLALDDPINSLSEEVAEEELEWLSNKDAFPAVETFVELSCIQPDLLKHQMTSPKLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSTKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDMHSNSHRKVVEMRKQKGMGTG