Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95002.t1 | KEH41184.1 | 83.1 | 362 | 34 | 1 | 1 | 362 | 1 | 335 | 2.30E-128 | 468.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95002.t1 | Q9SZ05 | 29.4 | 102 | 70 | 1 | 9 | 110 | 14 | 113 | 5.6e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95002.t1 | A0A072VGK8 | 83.1 | 362 | 34 | 1 | 1 | 362 | 1 | 335 | 1.7e-128 | 468.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95002.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95002.t1 | MTR_1g046340 | 78.877 | 374 | 28 | 2 | 1 | 362 | 1 | 335 | 0.0 | 533 |
| MS.gene95002.t1 | MTR_1g046200 | 57.423 | 357 | 117 | 2 | 5 | 361 | 2 | 323 | 2.78e-126 | 366 |
| MS.gene95002.t1 | MTR_1g046320 | 73.611 | 144 | 38 | 0 | 218 | 361 | 190 | 333 | 9.39e-76 | 237 |
| MS.gene95002.t1 | MTR_3g088515 | 54.440 | 259 | 87 | 5 | 2 | 255 | 13 | 245 | 2.53e-70 | 220 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95002.t1 | AT5G57720 | 22.099 | 362 | 215 | 12 | 1 | 360 | 3 | 299 | 3.51e-13 | 69.7 |
| MS.gene95002.t1 | AT5G60140 | 24.363 | 353 | 222 | 9 | 11 | 359 | 15 | 326 | 5.15e-12 | 66.6 |
| MS.gene95002.t1 | AT3G53310 | 25.485 | 361 | 190 | 9 | 1 | 360 | 1 | 283 | 8.31e-12 | 65.5 |
| MS.gene95002.t1 | AT3G18960 | 36.190 | 105 | 63 | 3 | 11 | 114 | 30 | 131 | 9.24e-11 | 61.2 |
Find 69 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCATCATCTTCAAGATT+TGG | 0.287026 | 1.1:-29315244 | None:intergenic |
| AGGAAGACTTTGAAGAAGTT+AGG | 0.307444 | 1.1:-29314262 | None:intergenic |
| TGCTAAGGGTGCACGTTGTT+AGG | 0.311521 | 1.1:+29315947 | MS.gene95002:CDS |
| AGAGAGGAGAAATACGTAAA+TGG | 0.332365 | 1.1:+29315809 | MS.gene95002:CDS |
| GCATAGAAGTATGGATTTCC+AGG | 0.335888 | 1.1:-29315289 | None:intergenic |
| CACTTCCTCTATGATCTCTT+AGG | 0.351749 | 1.1:-29314546 | None:intergenic |
| TGACAACAGACCAAACATAT+TGG | 0.391564 | 1.1:+29315321 | MS.gene95002:CDS |
| AAGAACTAAACCAATATGTT+TGG | 0.413033 | 1.1:-29315331 | None:intergenic |
| GGAGGATGAGGATGAGGAAG+AGG | 0.430566 | 1.1:+29314777 | MS.gene95002:CDS |
| TTCAAAACAAAGGCTGTTGA+AGG | 0.442905 | 1.1:+29314516 | MS.gene95002:CDS |
| TTGCGGCAATACATGATGAT+AGG | 0.447437 | 1.1:-29315764 | None:intergenic |
| GCTAAGGGTGCACGTTGTTA+GGG | 0.450128 | 1.1:+29315948 | MS.gene95002:CDS |
| TACTAATACGATGGAGGATG+AGG | 0.464106 | 1.1:+29314765 | MS.gene95002:CDS |
| CCTTGCAGTGGCAACATACA+AGG | 0.465539 | 1.1:-29315592 | None:intergenic |
| GAAAATCAATTGAAATGCTA+AGG | 0.471162 | 1.1:+29315932 | MS.gene95002:CDS |
| AATAAAGTTTGTTGCCGATA+GGG | 0.473847 | 1.1:-29314588 | None:intergenic |
| GGAAGACTTTGAAGAAGTTA+GGG | 0.478785 | 1.1:-29314261 | None:intergenic |
| TACGATGGAGGATGAGGATG+AGG | 0.480347 | 1.1:+29314771 | MS.gene95002:CDS |
| CATGTCAAAGTGCGCCCTAT+CGG | 0.483624 | 1.1:+29314574 | MS.gene95002:CDS |
| CACACATTGAGGATAGTTCA+AGG | 0.489279 | 1.1:-29314711 | None:intergenic |
| GATATTGGTTTAGGGAGCAT+TGG | 0.500691 | 1.1:+29315205 | MS.gene95002:intron |
| GAGGATGAGGAAGAGGAAGA+TGG | 0.501826 | 1.1:+29314784 | MS.gene95002:CDS |
| GAGATCATAGAGGAAGTGAT+TGG | 0.510228 | 1.1:+29314551 | MS.gene95002:CDS |
| AAAGAAGCACTCTGATAGAA+TGG | 0.512843 | 1.1:+29314288 | MS.gene95002:CDS |
| AGGAATAAAGGAGATGGAAA+GGG | 0.516562 | 1.1:+29315024 | MS.gene95002:CDS |
| AAGGAATAAAGGAGATGGAA+AGG | 0.528969 | 1.1:+29315023 | MS.gene95002:CDS |
| ATCAGCTTCACAAAAGCCGT+TGG | 0.529706 | 1.1:-29314490 | None:intergenic |
| CGATGACGTTGATGAGGAGA+AGG | 0.531028 | 1.1:+29314876 | MS.gene95002:CDS |
| GAAATACGTAAATGGAAAGA+TGG | 0.532076 | 1.1:+29315817 | MS.gene95002:CDS |
| GAAGAAGTTAGGGAACTCCT+TGG | 0.540851 | 1.1:-29314251 | None:intergenic |
| GCCGAGTATTTGTGCGAGGG+TGG | 0.540995 | 1.1:+29315839 | MS.gene95002:CDS |
| CCCACCCTCGCACAAATACT+CGG | 0.548148 | 1.1:-29315840 | None:intergenic |
| CGATGATGTTGATGAGGAGG+AGG | 0.548787 | 1.1:+29314966 | MS.gene95002:CDS |
| GCTGAAATGTATATTCAGCC+TGG | 0.549138 | 1.1:+29315271 | MS.gene95002:CDS |
| TCAGCTTCACAAAAGCCGTT+GGG | 0.551363 | 1.1:-29314489 | None:intergenic |
| TATCAGAGTGCTTCTTTGTG+AGG | 0.557625 | 1.1:-29314282 | None:intergenic |
| AAATAAAGTTTGTTGCCGAT+AGG | 0.559250 | 1.1:-29314589 | None:intergenic |
| AAAGATGAAGGTGATGGACG+AGG | 0.565087 | 1.1:+29314735 | MS.gene95002:CDS |
| CTCAATGTGTGAAAAGATGA+AGG | 0.571790 | 1.1:+29314723 | MS.gene95002:CDS |
| TATTTCGAAGAATGTCATCA+AGG | 0.573351 | 1.1:+29315538 | MS.gene95002:CDS |
| TGTGAACTTGTGTTGCATGA+AGG | 0.573986 | 1.1:+29315910 | MS.gene95002:CDS |
| CCTTGTATGTTGCCACTGCA+AGG | 0.576526 | 1.1:+29315592 | MS.gene95002:CDS |
| GGAGGAAAATACTAATACGA+TGG | 0.576880 | 1.1:+29314756 | MS.gene95002:CDS |
| AAAATCAATTGAAATGCTAA+GGG | 0.582870 | 1.1:+29315933 | MS.gene95002:CDS |
| TCACAGGATGTTCAAAGTAA+CGG | 0.587767 | 1.1:+29315733 | MS.gene95002:intron |
| CGTTGATGAGGAGAAGGATG+AGG | 0.589997 | 1.1:+29314882 | MS.gene95002:CDS |
| ATGGTAGATGAAGAAGAAGA+TGG | 0.592976 | 1.1:+29314934 | MS.gene95002:CDS |
| TGATGATTACACAATGGTAG+AGG | 0.597750 | 1.1:+29314834 | MS.gene95002:CDS |
| AGCTGATGCTTTCAAAACAA+AGG | 0.597947 | 1.1:+29314506 | MS.gene95002:CDS |
| CCGAGTATTTGTGCGAGGGT+GGG | 0.600057 | 1.1:+29315840 | MS.gene95002:CDS |
| ACAAAACATATTGAAAAGAG+AGG | 0.601836 | 1.1:+29315793 | MS.gene95002:CDS |
| TCTGCTGCAGCTTATCCCAA+CGG | 0.606121 | 1.1:+29314474 | MS.gene95002:intron |
| TGATATGCTTTGTAAAGCAA+AGG | 0.607441 | 1.1:-29315568 | None:intergenic |
| TTTCAATGTGTGTGAAAACA+AGG | 0.612200 | 1.1:-29314666 | None:intergenic |
| GGAAAATACTAATACGATGG+AGG | 0.618407 | 1.1:+29314759 | MS.gene95002:CDS |
| ATAACAATTATACCTTGCAG+TGG | 0.625581 | 1.1:-29315604 | None:intergenic |
| TAACGATGATGTTGATGAGG+AGG | 0.631678 | 1.1:+29314963 | MS.gene95002:CDS |
| TTTATCCTAAGAGATCATAG+AGG | 0.632452 | 1.1:+29314541 | MS.gene95002:CDS |
| TGATAACGATGATGTTGATG+AGG | 0.638893 | 1.1:+29314960 | MS.gene95002:CDS |
| GATGAAGGTGATGGACGAGG+AGG | 0.642889 | 1.1:+29314738 | MS.gene95002:CDS |
| AATTATGACTAACAATGCCA+AGG | 0.645414 | 1.1:+29314234 | None:intergenic |
| GTGTGAAAAGATGAAGGTGA+TGG | 0.648653 | 1.1:+29314729 | MS.gene95002:CDS |
| GATGGCCGAGTATTTGTGCG+AGG | 0.649148 | 1.1:+29315835 | MS.gene95002:CDS |
| ATGGCCGAGTATTTGTGCGA+GGG | 0.662338 | 1.1:+29315836 | MS.gene95002:CDS |
| CTTGCAGTGGCAACATACAA+GGG | 0.670891 | 1.1:-29315591 | None:intergenic |
| ACAATGGTAGAGGAAGAAGA+TGG | 0.676224 | 1.1:+29314844 | MS.gene95002:CDS |
| TGATAACGATGACGTTGATG+AGG | 0.684754 | 1.1:+29314870 | MS.gene95002:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1.1:+29314828 | MS.gene95002:CDS |
| TGATGATGATGATTACACAA+TGG | 0.769323 | 1.1:+29314915 | MS.gene95002:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATGAAAGAAAAA+AGG | + | chr1.1:29315004-29315023 | MS.gene95002:CDS | 10.0% |
| !! | TAATGTATAATAATATTTGG+AGG | - | chr1.1:29314340-29314359 | None:intergenic | 15.0% |
| !!! | GTATGTTATTTATATCATAA+TGG | + | chr1.1:29315094-29315113 | MS.gene95002:intron | 15.0% |
| !!! | TATAAATAACATACATGTTT+TGG | - | chr1.1:29315088-29315107 | None:intergenic | 15.0% |
| !! | AAAATCAATTGAAATGCTAA+GGG | + | chr1.1:29315933-29315952 | MS.gene95002:CDS | 20.0% |
| !! | ATGAAAGAAAAAAGGAATAA+AGG | + | chr1.1:29315012-29315031 | MS.gene95002:CDS | 20.0% |
| !! | ATTTACCTAATGATTGATAT+TGG | + | chr1.1:29315190-29315209 | MS.gene95002:intron | 20.0% |
| !!! | AACAAACTTTATTTTGATGA+TGG | + | chr1.1:29314598-29314617 | MS.gene95002:CDS | 20.0% |
| !!! | TAATGATTGATATTGGTTTA+GGG | + | chr1.1:29315197-29315216 | MS.gene95002:intron | 20.0% |
| ! | AAGAACTAAACCAATATGTT+TGG | - | chr1.1:29315334-29315353 | None:intergenic | 25.0% |
| ! | ACAAAACATATTGAAAAGAG+AGG | + | chr1.1:29315793-29315812 | MS.gene95002:CDS | 25.0% |
| ! | ATTTCATCATCTTCAAGATT+TGG | - | chr1.1:29315247-29315266 | None:intergenic | 25.0% |
| ! | CTAAACCAATATCAATCATT+AGG | - | chr1.1:29315198-29315217 | None:intergenic | 25.0% |
| ! | GAAAATCAATTGAAATGCTA+AGG | + | chr1.1:29315932-29315951 | MS.gene95002:CDS | 25.0% |
| !! | AGTAATTAGTCCATTTTCTT+AGG | + | chr1.1:29315439-29315458 | MS.gene95002:intron | 25.0% |
| !! | GAAGTGAAGTACAATTTTAT+TGG | + | chr1.1:29315660-29315679 | MS.gene95002:intron | 25.0% |
| !!! | AACTTTATTTTGATGATGGT+TGG | + | chr1.1:29314602-29314621 | MS.gene95002:CDS | 25.0% |
| !!! | CTAATGATTGATATTGGTTT+AGG | + | chr1.1:29315196-29315215 | MS.gene95002:intron | 25.0% |
| !!! | TATTGTTTTGCATAGAAGTA+TGG | - | chr1.1:29315301-29315320 | None:intergenic | 25.0% |
| ATAACAATTATACCTTGCAG+TGG | - | chr1.1:29315607-29315626 | None:intergenic | 30.0% | |
| GAAAAAAGGAATAAAGGAGA+TGG | + | chr1.1:29315018-29315037 | MS.gene95002:CDS | 30.0% | |
| GAAATACGTAAATGGAAAGA+TGG | + | chr1.1:29315817-29315836 | MS.gene95002:CDS | 30.0% | |
| TATTTCGAAGAATGTCATCA+AGG | + | chr1.1:29315538-29315557 | MS.gene95002:CDS | 30.0% | |
| TGATATGCTTTGTAAAGCAA+AGG | - | chr1.1:29315571-29315590 | None:intergenic | 30.0% | |
| TTTATCCTAAGAGATCATAG+AGG | + | chr1.1:29314541-29314560 | MS.gene95002:CDS | 30.0% | |
| TTTCAATGTGTGTGAAAACA+AGG | - | chr1.1:29314669-29314688 | None:intergenic | 30.0% | |
| ! | ATATGTTTTGTGCTCATTTG+CGG | - | chr1.1:29315784-29315803 | None:intergenic | 30.0% |
| ! | TATCATAATGGAGAAGAAGA+AGG | + | chr1.1:29315106-29315125 | MS.gene95002:intron | 30.0% |
| ! | TGATGATGATGATTACACAA+TGG | + | chr1.1:29314828-29314847 | MS.gene95002:CDS | 30.0% |
| !! | AAATAAAGTTTGTTGCCGAT+AGG | - | chr1.1:29314592-29314611 | None:intergenic | 30.0% |
| !! | AATAAAGTTTGTTGCCGATA+GGG | - | chr1.1:29314591-29314610 | None:intergenic | 30.0% |
| AAGGAATAAAGGAGATGGAA+AGG | + | chr1.1:29315023-29315042 | MS.gene95002:CDS | 35.0% | |
| AGAGAGGAGAAATACGTAAA+TGG | + | chr1.1:29315809-29315828 | MS.gene95002:CDS | 35.0% | |
| AGCTGATGCTTTCAAAACAA+AGG | + | chr1.1:29314506-29314525 | MS.gene95002:CDS | 35.0% | |
| AGGAATAAAGGAGATGGAAA+GGG | + | chr1.1:29315024-29315043 | MS.gene95002:CDS | 35.0% | |
| ATGGTAGATGAAGAAGAAGA+TGG | + | chr1.1:29314934-29314953 | MS.gene95002:CDS | 35.0% | |
| CTCAATGTGTGAAAAGATGA+AGG | + | chr1.1:29314723-29314742 | MS.gene95002:CDS | 35.0% | |
| GGAAAATACTAATACGATGG+AGG | + | chr1.1:29314759-29314778 | MS.gene95002:CDS | 35.0% | |
| GGAGGAAAATACTAATACGA+TGG | + | chr1.1:29314756-29314775 | MS.gene95002:CDS | 35.0% | |
| TCACAGGATGTTCAAAGTAA+CGG | + | chr1.1:29315733-29315752 | MS.gene95002:intron | 35.0% | |
| TGACAACAGACCAAACATAT+TGG | + | chr1.1:29315321-29315340 | MS.gene95002:CDS | 35.0% | |
| TGATGATTACACAATGGTAG+AGG | + | chr1.1:29314834-29314853 | MS.gene95002:CDS | 35.0% | |
| TTCAAAACAAAGGCTGTTGA+AGG | + | chr1.1:29314516-29314535 | MS.gene95002:CDS | 35.0% | |
| ! | AGGAAGACTTTGAAGAAGTT+AGG | - | chr1.1:29314265-29314284 | None:intergenic | 35.0% |
| ! | CTTCATCTTTTCACACATTG+AGG | - | chr1.1:29314725-29314744 | None:intergenic | 35.0% |
| ! | GGAAGACTTTGAAGAAGTTA+GGG | - | chr1.1:29314264-29314283 | None:intergenic | 35.0% |
| ! | TGATAACGATGATGTTGATG+AGG | + | chr1.1:29314960-29314979 | MS.gene95002:CDS | 35.0% |
| !! | AAAGAAGCACTCTGATAGAA+TGG | + | chr1.1:29314288-29314307 | MS.gene95002:CDS | 35.0% |
| AACATCCTGTGATGACAGAA+AGG | - | chr1.1:29315725-29315744 | None:intergenic | 40.0% | |
| ACAATGGTAGAGGAAGAAGA+TGG | + | chr1.1:29314844-29314863 | MS.gene95002:CDS | 40.0% | |
| CACACATTGAGGATAGTTCA+AGG | - | chr1.1:29314714-29314733 | None:intergenic | 40.0% | |
| CACTTCCTCTATGATCTCTT+AGG | - | chr1.1:29314549-29314568 | None:intergenic | 40.0% | |
| GAGATCATAGAGGAAGTGAT+TGG | + | chr1.1:29314551-29314570 | MS.gene95002:CDS | 40.0% | |
| GCTGAAATGTATATTCAGCC+TGG | + | chr1.1:29315271-29315290 | MS.gene95002:CDS | 40.0% | |
| GTGTGAAAAGATGAAGGTGA+TGG | + | chr1.1:29314729-29314748 | MS.gene95002:CDS | 40.0% | |
| TACTAATACGATGGAGGATG+AGG | + | chr1.1:29314765-29314784 | MS.gene95002:CDS | 40.0% | |
| TGTGAACTTGTGTTGCATGA+AGG | + | chr1.1:29315910-29315929 | MS.gene95002:CDS | 40.0% | |
| TTGCGGCAATACATGATGAT+AGG | - | chr1.1:29315767-29315786 | None:intergenic | 40.0% | |
| ! | GCATAGAAGTATGGATTTCC+AGG | - | chr1.1:29315292-29315311 | None:intergenic | 40.0% |
| ! | TAACGATGATGTTGATGAGG+AGG | + | chr1.1:29314963-29314982 | MS.gene95002:CDS | 40.0% |
| ! | TAGTCCATTTTCTTAGGCCT+GGG | + | chr1.1:29315445-29315464 | MS.gene95002:intron | 40.0% |
| ! | TATCAGAGTGCTTCTTTGTG+AGG | - | chr1.1:29314285-29314304 | None:intergenic | 40.0% |
| ! | TGATAACGATGACGTTGATG+AGG | + | chr1.1:29314870-29314889 | MS.gene95002:CDS | 40.0% |
| ! | TTAGTCCATTTTCTTAGGCC+TGG | + | chr1.1:29315444-29315463 | MS.gene95002:intron | 40.0% |
| !! | GATATTGGTTTAGGGAGCAT+TGG | + | chr1.1:29315205-29315224 | MS.gene95002:intron | 40.0% |
| ATCAGCTTCACAAAAGCCGT+TGG | - | chr1.1:29314493-29314512 | None:intergenic | 45.0% | |
| CTTGCAGTGGCAACATACAA+GGG | - | chr1.1:29315594-29315613 | None:intergenic | 45.0% | |
| GAAGAAGTTAGGGAACTCCT+TGG | - | chr1.1:29314254-29314273 | None:intergenic | 45.0% | |
| TCAGCTTCACAAAAGCCGTT+GGG | - | chr1.1:29314492-29314511 | None:intergenic | 45.0% | |
| TTCGTCCTTTCTGTCATCAC+AGG | + | chr1.1:29315717-29315736 | MS.gene95002:intron | 45.0% | |
| ! | AGTCCATTTTCTTAGGCCTG+GGG | + | chr1.1:29315446-29315465 | MS.gene95002:intron | 45.0% |
| !! | AAAGATGAAGGTGATGGACG+AGG | + | chr1.1:29314735-29314754 | MS.gene95002:CDS | 45.0% |
| !! | AAATAATGTATAATAATATT+TGG | - | chr1.1:29314343-29314362 | None:intergenic | 5.0% |
| ACCAATTTCATCCTCACCCC+AGG | - | chr1.1:29315465-29315484 | None:intergenic | 50.0% | |
| ATGGCCGAGTATTTGTGCGA+GGG | + | chr1.1:29315836-29315855 | MS.gene95002:CDS | 50.0% | |
| CATGTCAAAGTGCGCCCTAT+CGG | + | chr1.1:29314574-29314593 | MS.gene95002:CDS | 50.0% | |
| CCTTGCAGTGGCAACATACA+AGG | - | chr1.1:29315595-29315614 | None:intergenic | 50.0% | |
| CCTTGTATGTTGCCACTGCA+AGG | + | chr1.1:29315592-29315611 | MS.gene95002:CDS | 50.0% | |
| GAGGATGAGGAAGAGGAAGA+TGG | + | chr1.1:29314784-29314803 | MS.gene95002:CDS | 50.0% | |
| TACGATGGAGGATGAGGATG+AGG | + | chr1.1:29314771-29314790 | MS.gene95002:CDS | 50.0% | |
| TCACCCCAGGCCTAAGAAAA+TGG | - | chr1.1:29315452-29315471 | None:intergenic | 50.0% | |
| TCTGCTGCAGCTTATCCCAA+CGG | + | chr1.1:29314474-29314493 | MS.gene95002:intron | 50.0% | |
| ! | ATTTTCTTAGGCCTGGGGTG+AGG | + | chr1.1:29315451-29315470 | MS.gene95002:intron | 50.0% |
| ! | CGATGACGTTGATGAGGAGA+AGG | + | chr1.1:29314876-29314895 | MS.gene95002:CDS | 50.0% |
| ! | CGATGATGTTGATGAGGAGG+AGG | + | chr1.1:29314966-29314985 | MS.gene95002:CDS | 50.0% |
| ! | CGTTGATGAGGAGAAGGATG+AGG | + | chr1.1:29314882-29314901 | MS.gene95002:CDS | 50.0% |
| ! | GCTAAGGGTGCACGTTGTTA+GGG | + | chr1.1:29315948-29315967 | MS.gene95002:CDS | 50.0% |
| ! | TGCTAAGGGTGCACGTTGTT+AGG | + | chr1.1:29315947-29315966 | MS.gene95002:CDS | 50.0% |
| CCCACCCTCGCACAAATACT+CGG | - | chr1.1:29315843-29315862 | None:intergenic | 55.0% | |
| CCGAGTATTTGTGCGAGGGT+GGG | + | chr1.1:29315840-29315859 | MS.gene95002:CDS | 55.0% | |
| GATGGCCGAGTATTTGTGCG+AGG | + | chr1.1:29315835-29315854 | MS.gene95002:CDS | 55.0% | |
| GCCTGGGGTGAGGATGAAAT+TGG | + | chr1.1:29315461-29315480 | MS.gene95002:intron | 55.0% | |
| GGAGGATGAGGATGAGGAAG+AGG | + | chr1.1:29314777-29314796 | MS.gene95002:CDS | 55.0% | |
| !! | GATGAAGGTGATGGACGAGG+AGG | + | chr1.1:29314738-29314757 | MS.gene95002:CDS | 55.0% |
| GCCGAGTATTTGTGCGAGGG+TGG | + | chr1.1:29315839-29315858 | MS.gene95002:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 29314238 | 29315978 | 29314238 | ID=MS.gene95002 |
| chr1.1 | mRNA | 29314238 | 29315978 | 29314238 | ID=MS.gene95002.t1;Parent=MS.gene95002 |
| chr1.1 | exon | 29314238 | 29314309 | 29314238 | ID=MS.gene95002.t1.exon1;Parent=MS.gene95002.t1 |
| chr1.1 | CDS | 29314238 | 29314309 | 29314238 | ID=cds.MS.gene95002.t1;Parent=MS.gene95002.t1 |
| chr1.1 | exon | 29314484 | 29315057 | 29314484 | ID=MS.gene95002.t1.exon2;Parent=MS.gene95002.t1 |
| chr1.1 | CDS | 29314484 | 29315057 | 29314484 | ID=cds.MS.gene95002.t1;Parent=MS.gene95002.t1 |
| chr1.1 | exon | 29315218 | 29315342 | 29315218 | ID=MS.gene95002.t1.exon3;Parent=MS.gene95002.t1 |
| chr1.1 | CDS | 29315218 | 29315342 | 29315218 | ID=cds.MS.gene95002.t1;Parent=MS.gene95002.t1 |
| chr1.1 | exon | 29315536 | 29315613 | 29315536 | ID=MS.gene95002.t1.exon4;Parent=MS.gene95002.t1 |
| chr1.1 | CDS | 29315536 | 29315613 | 29315536 | ID=cds.MS.gene95002.t1;Parent=MS.gene95002.t1 |
| chr1.1 | exon | 29315739 | 29315978 | 29315739 | ID=MS.gene95002.t1.exon5;Parent=MS.gene95002.t1 |
| chr1.1 | CDS | 29315739 | 29315978 | 29315739 | ID=cds.MS.gene95002.t1;Parent=MS.gene95002.t1 |
| Gene Sequence |
| Protein sequence |
