Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95017.t1 | XP_013455733.1 | 56.2 | 251 | 89 | 5 | 1 | 248 | 1 | 233 | 9.90E-62 | 246.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95017.t1 | Q4PSU4 | 35.0 | 197 | 112 | 5 | 1 | 187 | 55 | 245 | 9.2e-16 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95017.t1 | A0A072UJ33 | 56.2 | 251 | 89 | 5 | 1 | 248 | 1 | 233 | 7.1e-62 | 246.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95017.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95017.t1 | MTR_4g051538 | 57.258 | 248 | 91 | 5 | 1 | 248 | 1 | 233 | 3.86e-84 | 251 |
| MS.gene95017.t1 | MTR_3g104630 | 54.730 | 148 | 60 | 5 | 94 | 238 | 3 | 146 | 8.88e-40 | 135 |
| MS.gene95017.t1 | MTR_3g052920 | 37.126 | 167 | 88 | 5 | 1 | 150 | 1 | 167 | 1.21e-22 | 93.2 |
| MS.gene95017.t1 | MTR_2g030740 | 37.725 | 167 | 87 | 4 | 1 | 150 | 1 | 167 | 1.81e-22 | 92.8 |
| MS.gene95017.t1 | MTR_1g105910 | 33.036 | 224 | 118 | 7 | 1 | 192 | 1 | 224 | 1.81e-22 | 92.8 |
| MS.gene95017.t1 | MTR_1g012570 | 37.931 | 174 | 86 | 8 | 1 | 156 | 1 | 170 | 2.92e-22 | 92.0 |
| MS.gene95017.t1 | MTR_1g077360 | 30.808 | 198 | 111 | 5 | 1 | 187 | 1 | 183 | 3.71e-22 | 91.7 |
| MS.gene95017.t1 | MTR_8g043650 | 37.086 | 151 | 80 | 3 | 1 | 136 | 1 | 151 | 5.45e-22 | 91.3 |
| MS.gene95017.t1 | MTR_1g106070 | 37.267 | 161 | 84 | 5 | 1 | 144 | 1 | 161 | 2.31e-21 | 88.2 |
| MS.gene95017.t1 | MTR_1g108510 | 33.133 | 166 | 98 | 3 | 1 | 156 | 1 | 163 | 2.89e-21 | 89.4 |
| MS.gene95017.t1 | MTR_5g053390 | 31.163 | 215 | 114 | 8 | 1 | 201 | 1 | 195 | 5.48e-21 | 88.6 |
| MS.gene95017.t1 | MTR_3g030770 | 33.133 | 166 | 98 | 3 | 1 | 156 | 1 | 163 | 6.63e-21 | 88.2 |
| MS.gene95017.t1 | MTR_2g085280 | 28.151 | 238 | 137 | 8 | 1 | 206 | 1 | 236 | 8.21e-21 | 88.2 |
| MS.gene95017.t1 | MTR_3g080940 | 32.727 | 165 | 98 | 3 | 1 | 155 | 1 | 162 | 2.99e-20 | 85.9 |
| MS.gene95017.t1 | MTR_2g085250 | 31.250 | 160 | 99 | 3 | 1 | 151 | 1 | 158 | 3.78e-20 | 86.3 |
| MS.gene95017.t1 | MTR_1g105920 | 36.424 | 151 | 81 | 3 | 1 | 136 | 1 | 151 | 5.71e-20 | 85.9 |
| MS.gene95017.t1 | MTR_1g075600 | 29.545 | 176 | 108 | 4 | 1 | 163 | 1 | 173 | 1.35e-19 | 85.1 |
| MS.gene95017.t1 | MTR_8g086290 | 31.579 | 171 | 84 | 4 | 4 | 156 | 7 | 162 | 4.69e-19 | 82.0 |
| MS.gene95017.t1 | MTR_5g045560 | 34.307 | 137 | 80 | 3 | 1 | 127 | 1 | 137 | 4.74e-19 | 83.6 |
| MS.gene95017.t1 | MTR_3g052870 | 52.778 | 72 | 34 | 0 | 1 | 72 | 1 | 72 | 6.80e-19 | 82.8 |
| MS.gene95017.t1 | MTR_1g108580 | 32.919 | 161 | 91 | 5 | 1 | 144 | 1 | 161 | 7.02e-19 | 82.8 |
| MS.gene95017.t1 | MTR_5g055100 | 27.731 | 238 | 134 | 8 | 1 | 204 | 1 | 234 | 1.35e-18 | 82.4 |
| MS.gene95017.t1 | MTR_2g105290 | 30.247 | 162 | 98 | 4 | 4 | 156 | 7 | 162 | 6.34e-18 | 79.0 |
| MS.gene95017.t1 | MTR_2g093190 | 32.298 | 161 | 92 | 4 | 1 | 144 | 1 | 161 | 1.70e-17 | 79.0 |
| MS.gene95017.t1 | MTR_0121s0100 | 44.156 | 77 | 43 | 0 | 1 | 77 | 1 | 77 | 9.61e-17 | 74.7 |
| MS.gene95017.t1 | MTR_3g030780 | 38.889 | 108 | 63 | 2 | 1 | 105 | 1 | 108 | 6.23e-16 | 72.4 |
| MS.gene95017.t1 | MTR_4g094638 | 50.725 | 69 | 34 | 0 | 9 | 77 | 2 | 70 | 6.93e-16 | 73.6 |
| MS.gene95017.t1 | MTR_1g105905 | 30.270 | 185 | 110 | 6 | 18 | 185 | 1 | 183 | 2.10e-15 | 73.2 |
| MS.gene95017.t1 | MTR_0121s0080 | 30.723 | 166 | 98 | 4 | 1 | 149 | 1 | 166 | 8.30e-15 | 72.0 |
| MS.gene95017.t1 | MTR_8g046350 | 35.345 | 116 | 56 | 3 | 9 | 115 | 2 | 107 | 2.08e-14 | 69.3 |
| MS.gene95017.t1 | MTR_4g094632 | 33.333 | 144 | 84 | 4 | 9 | 151 | 2 | 134 | 3.46e-14 | 68.6 |
| MS.gene95017.t1 | MTR_1g047550 | 36.522 | 115 | 61 | 2 | 9 | 115 | 2 | 112 | 4.30e-14 | 68.9 |
| MS.gene95017.t1 | MTR_8g022970 | 31.288 | 163 | 96 | 3 | 8 | 159 | 17 | 174 | 5.60e-14 | 68.6 |
| MS.gene95017.t1 | MTR_8g079502 | 36.607 | 112 | 67 | 2 | 9 | 116 | 2 | 113 | 6.00e-14 | 68.6 |
| MS.gene95017.t1 | MTR_3g067875 | 50.909 | 55 | 27 | 0 | 18 | 72 | 1 | 55 | 6.59e-14 | 65.5 |
| MS.gene95017.t1 | MTR_8g051580 | 32.143 | 140 | 71 | 4 | 9 | 126 | 2 | 139 | 3.26e-13 | 66.2 |
| MS.gene95017.t1 | MTR_1g054265 | 40.000 | 70 | 42 | 0 | 9 | 78 | 2 | 71 | 3.16e-12 | 63.5 |
| MS.gene95017.t1 | MTR_4g131030 | 34.314 | 102 | 58 | 2 | 9 | 101 | 2 | 103 | 3.38e-12 | 64.3 |
| MS.gene95017.t1 | MTR_1g029670 | 50.000 | 64 | 32 | 0 | 9 | 72 | 2 | 65 | 8.60e-12 | 62.4 |
| MS.gene95017.t1 | MTR_1g063160 | 35.714 | 98 | 62 | 1 | 9 | 105 | 2 | 99 | 8.80e-12 | 62.4 |
| MS.gene95017.t1 | MTR_4g102530 | 49.254 | 67 | 31 | 1 | 10 | 76 | 3 | 66 | 3.40e-11 | 61.2 |
| MS.gene95017.t1 | MTR_7g028448 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 3.49e-11 | 60.5 |
| MS.gene95017.t1 | MTR_4g036915 | 29.921 | 127 | 83 | 4 | 26 | 148 | 29 | 153 | 3.49e-11 | 60.5 |
| MS.gene95017.t1 | MTR_4g127140 | 27.811 | 169 | 103 | 5 | 4 | 156 | 7 | 172 | 6.71e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95017.t1 | AT4G36590 | 35.329 | 167 | 91 | 3 | 5 | 156 | 3 | 167 | 5.67e-23 | 94.4 |
| MS.gene95017.t1 | AT1G29962 | 34.659 | 176 | 97 | 4 | 1 | 161 | 1 | 173 | 1.87e-21 | 88.6 |
| MS.gene95017.t1 | AT2G24840 | 32.642 | 193 | 110 | 5 | 7 | 187 | 61 | 245 | 4.25e-21 | 89.7 |
| MS.gene95017.t1 | AT1G28460 | 34.682 | 173 | 98 | 4 | 1 | 161 | 1 | 170 | 1.45e-19 | 83.6 |
| MS.gene95017.t1 | AT1G01530 | 38.983 | 118 | 66 | 2 | 5 | 117 | 3 | 119 | 4.34e-19 | 84.0 |
| MS.gene95017.t1 | AT5G60440 | 30.660 | 212 | 119 | 6 | 5 | 205 | 3 | 197 | 1.19e-18 | 83.6 |
| MS.gene95017.t1 | AT2G34440 | 31.609 | 174 | 102 | 7 | 9 | 174 | 2 | 166 | 4.82e-17 | 76.6 |
| MS.gene95017.t1 | AT1G28450 | 32.184 | 174 | 100 | 4 | 1 | 159 | 1 | 171 | 1.81e-16 | 75.5 |
| MS.gene95017.t1 | AT1G65360 | 32.759 | 116 | 74 | 1 | 5 | 116 | 3 | 118 | 5.58e-16 | 75.1 |
| MS.gene95017.t1 | AT3G04100 | 41.573 | 89 | 49 | 1 | 2 | 90 | 7 | 92 | 8.92e-16 | 73.9 |
| MS.gene95017.t1 | AT3G66656 | 47.692 | 65 | 34 | 0 | 9 | 73 | 2 | 66 | 6.57e-14 | 68.2 |
| MS.gene95017.t1 | AT1G47760 | 39.759 | 83 | 47 | 1 | 9 | 91 | 2 | 81 | 1.04e-12 | 65.1 |
| MS.gene95017.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 6.47e-11 | 60.1 |
| MS.gene95017.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 6.47e-11 | 60.1 |
| MS.gene95017.t1 | AT5G10140 | 48.214 | 56 | 29 | 0 | 9 | 64 | 2 | 57 | 8.95e-11 | 59.3 |
| MS.gene95017.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 9.26e-11 | 60.5 |
| MS.gene95017.t1 | AT4G11880 | 49.254 | 67 | 32 | 1 | 10 | 76 | 3 | 67 | 9.26e-11 | 60.5 |
| MS.gene95017.t1 | AT1G72350 | 47.541 | 61 | 32 | 0 | 9 | 69 | 43 | 103 | 9.41e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCATATCATTCATCTTT+AGG | 0.191781 | 4.4:-40071859 | None:intergenic |
| ACAAATCCTCCTTATGTCTT+TGG | 0.244037 | 4.4:+40071441 | MS.gene95017:CDS |
| AACAACAACGGTTATGAAAT+TGG | 0.263911 | 4.4:+40071468 | MS.gene95017:CDS |
| CAAATCCTCCTTATGTCTTT+GGG | 0.278590 | 4.4:+40071442 | MS.gene95017:CDS |
| ACGGGAAAGTTTGAAGGCTT+TGG | 0.328236 | 4.4:+40071114 | MS.gene95017:CDS |
| GATGTTATTGCTTCTCTTGA+AGG | 0.349102 | 4.4:+40071763 | MS.gene95017:CDS |
| GAAGGTTCTCCATAACAATA+TGG | 0.353627 | 4.4:-40070956 | None:intergenic |
| CTTTGGAAAGTTATGGCTAT+TGG | 0.358280 | 4.4:+40071131 | MS.gene95017:CDS |
| AAAATTGGACACATCTTTAG+TGG | 0.370003 | 4.4:+40071201 | MS.gene95017:CDS |
| CCGCTTGCACGGTCAAGGTT+TGG | 0.377489 | 4.4:-40071805 | None:intergenic |
| TCTGAATTATCAACACTTTG+TGG | 0.392582 | 4.4:+40070893 | MS.gene95017:CDS |
| TTGAAGGCTTTGGAAAGTTA+TGG | 0.393387 | 4.4:+40071124 | MS.gene95017:CDS |
| CTTGACCGTGCAAGCGGAAG+TGG | 0.404505 | 4.4:+40071811 | MS.gene95017:CDS |
| CTTGCTATGGATTGAGAAGA+AGG | 0.408194 | 4.4:-40070974 | None:intergenic |
| GCATGTTGCGGAAGCACAAC+GGG | 0.408411 | 4.4:+40071096 | MS.gene95017:CDS |
| GCAGGAAAACCATATTGTTA+TGG | 0.420932 | 4.4:+40070947 | MS.gene95017:CDS |
| CGTGCAAGCGGAAGTGGAAA+TGG | 0.424404 | 4.4:+40071817 | MS.gene95017:CDS |
| CTGAATTATCAACACTTTGT+GGG | 0.424852 | 4.4:+40070894 | MS.gene95017:CDS |
| TTTAATTCTTCTTCTACTGA+AGG | 0.426435 | 4.4:-40071019 | None:intergenic |
| CTACCTCTTGATGTCCTCTT+CGG | 0.429458 | 4.4:-40070782 | None:intergenic |
| CTTCAAAATTGTTCTTGCTA+TGG | 0.431100 | 4.4:-40070987 | None:intergenic |
| CACTTCCGCTTGCACGGTCA+AGG | 0.445314 | 4.4:-40071810 | None:intergenic |
| ATACTTATTATTTCTCCAGC+AGG | 0.450183 | 4.4:+40070929 | MS.gene95017:CDS |
| CATTTCCACTTCCGCTTGCA+CGG | 0.466536 | 4.4:-40071816 | None:intergenic |
| AGACATAAGGAGGATTTGTC+TGG | 0.473975 | 4.4:-40071437 | None:intergenic |
| TTGTTGACCCCAAAGACATA+AGG | 0.475552 | 4.4:-40071450 | None:intergenic |
| TTAATTCTTCTTCTACTGAA+GGG | 0.481788 | 4.4:-40071018 | None:intergenic |
| AGCACAACGGGAAAGTTTGA+AGG | 0.506480 | 4.4:+40071108 | MS.gene95017:CDS |
| ATTTATGATCCAAAAGGAAA+AGG | 0.506756 | 4.4:+40071736 | MS.gene95017:CDS |
| TCCCACATTTATGATCCAAA+AGG | 0.522242 | 4.4:+40071730 | MS.gene95017:CDS |
| TCTTGCATAGATGAACTGAA+TGG | 0.533604 | 4.4:+40071411 | MS.gene95017:CDS |
| ATAAGTAGTGTCTTAAGCAA+TGG | 0.548667 | 4.4:+40071241 | MS.gene95017:CDS |
| TGAATTATCAACACTTTGTG+GGG | 0.569118 | 4.4:+40070895 | MS.gene95017:CDS |
| CCAAACCTTGACCGTGCAAG+CGG | 0.587745 | 4.4:+40071805 | MS.gene95017:CDS |
| GTCTTTGGGGTCAACAACAA+CGG | 0.600048 | 4.4:+40071456 | MS.gene95017:CDS |
| GGAGGAGAGATTAATCCTCA+TGG | 0.604055 | 4.4:+40071262 | MS.gene95017:CDS |
| TTGACCCCAAAGACATAAGG+AGG | 0.605994 | 4.4:-40071447 | None:intergenic |
| AAATCCTCCTTATGTCTTTG+GGG | 0.608431 | 4.4:+40071443 | MS.gene95017:CDS |
| AGTAGTGTCTTAAGCAATGG+AGG | 0.611596 | 4.4:+40071244 | MS.gene95017:CDS |
| ACAAAGTGTTGATAATTCAG+AGG | 0.616841 | 4.4:-40070891 | None:intergenic |
| AGCATGTTGCGGAAGCACAA+CGG | 0.628936 | 4.4:+40071095 | MS.gene95017:CDS |
| TTTGGATGAAAAGCATGTTG+CGG | 0.629913 | 4.4:+40071084 | MS.gene95017:CDS |
| TGGTTAAGATGGCTCCGAAG+AGG | 0.660173 | 4.4:+40070768 | None:intergenic |
| GCTCCGAAGAGGACATCAAG+AGG | 0.673948 | 4.4:+40070779 | MS.gene95017:CDS |
| GAAGGTAGAAATAAAACACA+AGG | 0.705496 | 4.4:+40071781 | MS.gene95017:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTTATGAAAAAG+TGG | + | chr4.4:40071365-40071384 | MS.gene95017:intron | 15.0% |
| !! | GAAATTATACAATATGTGTT+AGG | - | chr4.4:40071690-40071709 | None:intergenic | 20.0% |
| !! | TTATGACCAGTTAAAAAAAT+TGG | + | chr4.4:40071186-40071205 | MS.gene95017:CDS | 20.0% |
| !!! | AATGTCTTCATATCTTTTTT+TGG | - | chr4.4:40071642-40071661 | None:intergenic | 20.0% |
| !!! | ATGTCTTCATATCTTTTTTT+GGG | - | chr4.4:40071641-40071660 | None:intergenic | 20.0% |
| ! | ACTCTTGTGTTATATGAATT+TGG | - | chr4.4:40071514-40071533 | None:intergenic | 25.0% |
| ! | AGTATAGATATTTGATGTGT+TGG | - | chr4.4:40071556-40071575 | None:intergenic | 25.0% |
| ! | ATTTATGATCCAAAAGGAAA+AGG | + | chr4.4:40071736-40071755 | MS.gene95017:CDS | 25.0% |
| ! | GCATTAAAAATGGTTAAAGT+TGG | - | chr4.4:40071580-40071599 | None:intergenic | 25.0% |
| ! | TCTCATAAGTGCATTAAAAA+TGG | - | chr4.4:40071590-40071609 | None:intergenic | 25.0% |
| ! | TTAATTCTTCTTCTACTGAA+GGG | - | chr4.4:40071021-40071040 | None:intergenic | 25.0% |
| ! | TTTAATTCTTCTTCTACTGA+AGG | - | chr4.4:40071022-40071041 | None:intergenic | 25.0% |
| !!! | ATGTGTCCAATTTTTTTAAC+TGG | - | chr4.4:40071195-40071214 | None:intergenic | 25.0% |
| AAAATTGGACACATCTTTAG+TGG | + | chr4.4:40071201-40071220 | MS.gene95017:CDS | 30.0% | |
| AACAACAACGGTTATGAAAT+TGG | + | chr4.4:40071468-40071487 | MS.gene95017:CDS | 30.0% | |
| ATAAGTAGTGTCTTAAGCAA+TGG | + | chr4.4:40071241-40071260 | MS.gene95017:CDS | 30.0% | |
| CTGAATTATCAACACTTTGT+GGG | + | chr4.4:40070894-40070913 | MS.gene95017:CDS | 30.0% | |
| CTTCAAAATTGTTCTTGCTA+TGG | - | chr4.4:40070990-40071009 | None:intergenic | 30.0% | |
| GAAGGTAGAAATAAAACACA+AGG | + | chr4.4:40071781-40071800 | MS.gene95017:CDS | 30.0% | |
| TCTGAATTATCAACACTTTG+TGG | + | chr4.4:40070893-40070912 | MS.gene95017:CDS | 30.0% | |
| TGAATTATCAACACTTTGTG+GGG | + | chr4.4:40070895-40070914 | MS.gene95017:CDS | 30.0% | |
| TGTACATCTTCTAATCAACT+TGG | + | chr4.4:40071289-40071308 | MS.gene95017:intron | 30.0% | |
| ! | ATACTTATTATTTCTCCAGC+AGG | + | chr4.4:40070929-40070948 | MS.gene95017:CDS | 30.0% |
| ! | CACAAAAAATGATGAGCTTT+TGG | + | chr4.4:40071066-40071085 | MS.gene95017:CDS | 30.0% |
| ! | TCCTTTTGGATCATAAATGT+GGG | - | chr4.4:40071734-40071753 | None:intergenic | 30.0% |
| ! | TTCCTTTTGGATCATAAATG+TGG | - | chr4.4:40071735-40071754 | None:intergenic | 30.0% |
| !! | ACAAAGTGTTGATAATTCAG+AGG | - | chr4.4:40070894-40070913 | None:intergenic | 30.0% |
| AAATCCTCCTTATGTCTTTG+GGG | + | chr4.4:40071443-40071462 | MS.gene95017:CDS | 35.0% | |
| ACAAATCCTCCTTATGTCTT+TGG | + | chr4.4:40071441-40071460 | MS.gene95017:CDS | 35.0% | |
| CAAATCCTCCTTATGTCTTT+GGG | + | chr4.4:40071442-40071461 | MS.gene95017:CDS | 35.0% | |
| GAAGGTTCTCCATAACAATA+TGG | - | chr4.4:40070959-40070978 | None:intergenic | 35.0% | |
| GATGTTATTGCTTCTCTTGA+AGG | + | chr4.4:40071763-40071782 | MS.gene95017:CDS | 35.0% | |
| GCAGGAAAACCATATTGTTA+TGG | + | chr4.4:40070947-40070966 | MS.gene95017:CDS | 35.0% | |
| TCCCACATTTATGATCCAAA+AGG | + | chr4.4:40071730-40071749 | MS.gene95017:CDS | 35.0% | |
| TCTTGCATAGATGAACTGAA+TGG | + | chr4.4:40071411-40071430 | MS.gene95017:CDS | 35.0% | |
| TTTCTTGTCATTGAAGCTCA+TGG | + | chr4.4:40071706-40071725 | MS.gene95017:intron | 35.0% | |
| ! | ACATCATTGCCTTTTCCTTT+TGG | - | chr4.4:40071748-40071767 | None:intergenic | 35.0% |
| ! | CTTTGGAAAGTTATGGCTAT+TGG | + | chr4.4:40071131-40071150 | MS.gene95017:CDS | 35.0% |
| ! | GCATTTTCAAAGAGAAAGTC+TGG | + | chr4.4:40070854-40070873 | MS.gene95017:CDS | 35.0% |
| ! | TAACAATATGGTTTTCCTGC+TGG | - | chr4.4:40070947-40070966 | None:intergenic | 35.0% |
| ! | TTTGGATGAAAAGCATGTTG+CGG | + | chr4.4:40071084-40071103 | MS.gene95017:CDS | 35.0% |
| !! | TTGAAGGCTTTGGAAAGTTA+TGG | + | chr4.4:40071124-40071143 | MS.gene95017:CDS | 35.0% |
| AGACATAAGGAGGATTTGTC+TGG | - | chr4.4:40071440-40071459 | None:intergenic | 40.0% | |
| AGTAGTGTCTTAAGCAATGG+AGG | + | chr4.4:40071244-40071263 | MS.gene95017:CDS | 40.0% | |
| TTGTTGACCCCAAAGACATA+AGG | - | chr4.4:40071453-40071472 | None:intergenic | 40.0% | |
| ! | CTTGCTATGGATTGAGAAGA+AGG | - | chr4.4:40070977-40070996 | None:intergenic | 40.0% |
| ACGGGAAAGTTTGAAGGCTT+TGG | + | chr4.4:40071114-40071133 | MS.gene95017:CDS | 45.0% | |
| AGCACAACGGGAAAGTTTGA+AGG | + | chr4.4:40071108-40071127 | MS.gene95017:CDS | 45.0% | |
| CTACCTCTTGATGTCCTCTT+CGG | - | chr4.4:40070785-40070804 | None:intergenic | 45.0% | |
| GAAGATGTACACGTACCATG+AGG | - | chr4.4:40071280-40071299 | None:intergenic | 45.0% | |
| GGAGGAGAGATTAATCCTCA+TGG | + | chr4.4:40071262-40071281 | MS.gene95017:CDS | 45.0% | |
| TTGACCCCAAAGACATAAGG+AGG | - | chr4.4:40071450-40071469 | None:intergenic | 45.0% | |
| !! | GTCTTTGGGGTCAACAACAA+CGG | + | chr4.4:40071456-40071475 | MS.gene95017:CDS | 45.0% |
| CATTTCCACTTCCGCTTGCA+CGG | - | chr4.4:40071819-40071838 | None:intergenic | 50.0% | |
| ! | AGCATGTTGCGGAAGCACAA+CGG | + | chr4.4:40071095-40071114 | MS.gene95017:CDS | 50.0% |
| CCAAACCTTGACCGTGCAAG+CGG | + | chr4.4:40071805-40071824 | MS.gene95017:CDS | 55.0% | |
| CGTGCAAGCGGAAGTGGAAA+TGG | + | chr4.4:40071817-40071836 | MS.gene95017:CDS | 55.0% | |
| GCTCCGAAGAGGACATCAAG+AGG | + | chr4.4:40070779-40070798 | MS.gene95017:CDS | 55.0% | |
| ! | GCATGTTGCGGAAGCACAAC+GGG | + | chr4.4:40071096-40071115 | MS.gene95017:CDS | 55.0% |
| CACTTCCGCTTGCACGGTCA+AGG | - | chr4.4:40071813-40071832 | None:intergenic | 60.0% | |
| CCGCTTGCACGGTCAAGGTT+TGG | - | chr4.4:40071808-40071827 | None:intergenic | 60.0% | |
| CTTGACCGTGCAAGCGGAAG+TGG | + | chr4.4:40071811-40071830 | MS.gene95017:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 40070776 | 40071873 | 40070776 | ID=MS.gene95017 |
| chr4.4 | mRNA | 40070776 | 40071873 | 40070776 | ID=MS.gene95017.t1;Parent=MS.gene95017 |
| chr4.4 | exon | 40070776 | 40071283 | 40070776 | ID=MS.gene95017.t1.exon1;Parent=MS.gene95017.t1 |
| chr4.4 | CDS | 40070776 | 40071283 | 40070776 | ID=cds.MS.gene95017.t1;Parent=MS.gene95017.t1 |
| chr4.4 | exon | 40071406 | 40071495 | 40071406 | ID=MS.gene95017.t1.exon2;Parent=MS.gene95017.t1 |
| chr4.4 | CDS | 40071406 | 40071495 | 40071406 | ID=cds.MS.gene95017.t1;Parent=MS.gene95017.t1 |
| chr4.4 | exon | 40071722 | 40071873 | 40071722 | ID=MS.gene95017.t1.exon3;Parent=MS.gene95017.t1 |
| chr4.4 | CDS | 40071722 | 40071873 | 40071722 | ID=cds.MS.gene95017.t1;Parent=MS.gene95017.t1 |
| Gene Sequence |
| Protein sequence |
