AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95097

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95097.t1 MTR_4g133952 93.061 245 2 5 1 235 1 240 1.14e-164 454
MS.gene95097.t1 MTR_1g039040 81.188 101 19 0 58 158 4 104 1.52e-58 184
MS.gene95097.t1 MTR_2g026710 61.207 116 41 1 58 173 15 126 5.13e-51 164
MS.gene95097.t1 MTR_5g095740 61.739 115 44 0 41 155 4 118 2.02e-50 162
MS.gene95097.t1 MTR_7g061270 68.750 96 30 0 58 153 24 119 1.87e-49 160
MS.gene95097.t1 MTR_3g058980 70.103 97 29 0 59 155 26 122 1.90e-49 160
MS.gene95097.t1 MTR_7g100650 68.750 96 30 0 58 153 24 119 2.80e-49 159
MS.gene95097.t1 MTR_1g072790 62.069 116 42 1 40 153 7 122 9.15e-49 158
MS.gene95097.t1 MTR_4g119500 55.556 126 56 0 41 166 3 128 1.63e-48 156
MS.gene95097.t1 MTR_1g088860 60.177 113 44 1 42 154 19 130 2.44e-48 157
MS.gene95097.t1 MTR_8g091720 44.633 177 72 3 59 218 27 194 3.66e-47 155
MS.gene95097.t1 MTR_8g093920 60.606 99 39 0 59 157 39 137 1.72e-45 151
MS.gene95097.t1 MTR_0392s0020 61.616 99 38 0 58 156 16 114 3.22e-45 148
MS.gene95097.t1 MTR_4g133938 65.957 94 32 0 61 154 20 113 5.26e-44 145
MS.gene95097.t1 MTR_1g083070 51.087 92 45 0 60 151 4 95 2.49e-33 117
MS.gene95097.t1 MTR_1g029070 47.475 99 52 0 59 157 51 149 4.77e-28 105
MS.gene95097.t1 MTR_5g095900 50.000 92 46 0 57 148 13 104 9.40e-25 97.1
MS.gene95097.t1 MTR_1g028480 57.143 63 27 0 90 152 19 81 6.39e-21 84.7
MS.gene95097.t1 MTR_1g029100 40.789 76 45 0 65 140 7 82 9.08e-20 81.3
MS.gene95097.t1 MTR_2g056000 38.272 81 50 0 60 140 41 121 2.49e-17 77.4
MS.gene95097.t1 MTR_4g112380 37.975 79 49 0 60 138 11 89 1.88e-15 71.6
MS.gene95097.t1 MTR_5g095860 39.785 93 42 2 60 148 16 98 1.55e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95097.t1 AT5G47670 60.849 212 62 6 5 198 4 212 4.67e-74 224
MS.gene95097.t1 AT5G47670 60.849 212 62 6 5 198 4 212 4.67e-74 224
MS.gene95097.t1 AT5G47670 65.537 177 41 5 39 198 10 183 8.53e-69 210
MS.gene95097.t1 AT1G21970 57.923 183 56 4 24 190 12 189 6.25e-64 199
MS.gene95097.t1 AT4G14540 61.739 115 44 0 42 156 3 117 1.35e-51 165
MS.gene95097.t1 AT2G38880 60.714 112 44 0 42 153 3 114 5.23e-50 160
MS.gene95097.t1 AT2G38880 60.714 112 44 0 42 153 3 114 6.35e-50 160
MS.gene95097.t1 AT2G38880 60.714 112 44 0 42 153 3 114 6.35e-50 160
MS.gene95097.t1 AT2G38880 60.714 112 44 0 42 153 3 114 6.35e-50 160
MS.gene95097.t1 AT5G47640 68.687 99 31 0 59 157 26 124 9.74e-50 161
MS.gene95097.t1 AT2G37060 61.818 110 42 0 44 153 14 123 3.36e-49 159
MS.gene95097.t1 AT2G37060 61.818 110 42 0 44 153 14 123 3.36e-49 159
MS.gene95097.t1 AT2G37060 61.818 110 42 0 44 153 14 123 3.36e-49 159
MS.gene95097.t1 AT3G53340 54.483 145 60 3 58 198 27 169 1.82e-48 157
MS.gene95097.t1 AT3G53340 54.483 145 60 3 58 198 27 169 1.82e-48 157
MS.gene95097.t1 AT2G38880 59.259 108 44 0 42 149 3 110 7.53e-47 152
MS.gene95097.t1 AT2G38880 65.591 93 32 0 58 150 19 111 3.60e-46 149
MS.gene95097.t1 AT2G38880 58.716 109 45 0 42 150 3 111 5.72e-46 150
MS.gene95097.t1 AT2G38880 58.716 109 45 0 42 150 3 111 5.72e-46 150
MS.gene95097.t1 AT2G38880 65.591 93 32 0 58 150 19 111 2.76e-45 149
MS.gene95097.t1 AT2G38880 65.591 93 32 0 58 150 19 111 2.76e-45 149
MS.gene95097.t1 AT2G38880 65.591 93 32 0 58 150 19 111 2.76e-45 149
MS.gene95097.t1 AT2G13570 62.887 97 36 0 59 155 35 131 6.23e-45 150
MS.gene95097.t1 AT3G53340 66.667 93 31 0 58 150 27 119 8.99e-45 146
MS.gene95097.t1 AT2G47810 59.615 104 42 0 51 154 42 145 9.17e-45 147
MS.gene95097.t1 AT3G53340 67.021 94 31 0 58 151 27 120 1.15e-44 147
MS.gene95097.t1 AT3G53340 67.021 94 31 0 58 151 27 120 1.15e-44 147
MS.gene95097.t1 AT1G09030 54.167 96 44 0 60 155 3 98 1.11e-37 129
MS.gene95097.t1 AT5G23090 31.731 104 69 1 60 161 11 114 5.27e-17 75.9
MS.gene95097.t1 AT5G23090 31.731 104 69 1 60 161 11 114 5.27e-17 75.9
MS.gene95097.t1 AT5G23090 31.731 104 69 1 60 161 11 114 5.27e-17 75.9
MS.gene95097.t1 AT5G23090 32.653 98 64 1 60 155 11 108 1.20e-16 75.1
MS.gene95097.t1 AT5G08190 32.653 98 64 1 60 155 11 108 2.88e-16 73.9
MS.gene95097.t1 AT5G08190 31.373 102 68 1 60 159 11 112 3.86e-16 73.6
MS.gene95097.t1 AT5G23090 32.558 86 56 1 78 161 16 101 6.47e-12 62.0

Find 61 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTATGGAATATGGAAATTT+AGG 0.157903 8.2:-735710 MS.gene95097:CDS
CCAATACTCATTTATATTGA+TGG 0.259870 8.2:+735513 None:intergenic
GGAAAGAGGGGTATGGAATA+TGG 0.311976 8.2:-735719 MS.gene95097:CDS
CATCCAAATGGAGGGTATTA+CGG 0.347395 8.2:-735659 MS.gene95097:CDS
ATCCTTATCACATTTGCAAT+TGG 0.375002 8.2:+736010 None:intergenic
GAGTACATCAGCTTCATAAC+TGG 0.376606 8.2:-735914 MS.gene95097:CDS
CCCACCAACACCAATTCTTC+TGG 0.388520 8.2:-737923 MS.gene95097:intron
TTATTACGTACCAGAAGAAT+TGG 0.393519 8.2:+737913 None:intergenic
ATCCAAATGGAGGGTATTAC+GGG 0.394532 8.2:-735658 MS.gene95097:CDS
CACCCAGCAGCAATGGAAAC+TGG 0.404381 8.2:-737974 None:intergenic
TTCCCGTAATACCCTCCATT+TGG 0.406096 8.2:+735656 None:intergenic
CATCGTTACCGTGAGCTTGA+AGG 0.410024 8.2:-735773 MS.gene95097:CDS
AACTGCAGAAGATGTGCTTT+GGG 0.416101 8.2:-735849 MS.gene95097:CDS
GTATGGAATATGGAAATTTA+GGG 0.421974 8.2:-735709 MS.gene95097:CDS
GAAACTGGAGGAGGGTTTCA+TGG 0.423802 8.2:-737959 MS.gene95097:CDS
TAACTGCAGAAGATGTGCTT+TGG 0.426184 8.2:-735850 MS.gene95097:CDS
TGGTGTTGGTGGGGAGTTTG+CGG 0.433913 8.2:+737933 None:intergenic
TTTGTCCCACAGTTTCATAT+TGG 0.443088 8.2:-735683 MS.gene95097:CDS
TTTCATATTGGTCATCCAAA+TGG 0.444564 8.2:-735671 MS.gene95097:CDS
TGGAGGCTCATCTCATTCTC+AGG 0.455169 8.2:-735570 MS.gene95097:CDS
CTTTGGGCTATGAGTAAGCT+TGG 0.475258 8.2:-735833 MS.gene95097:CDS
TGCCAATTGCAAATGTGATA+AGG 0.483489 8.2:-736012 MS.gene95097:CDS
AACAATAGCCACTCATCAGC+TGG 0.494856 8.2:-736082 MS.gene95097:CDS
TGTACTCAGACACACACTCT+TGG 0.503017 8.2:+735930 None:intergenic
ACCAGAAGAATTGGTGTTGG+TGG 0.512322 8.2:+737922 None:intergenic
CCATCCCTCATCATATAAGT+TGG 0.513039 8.2:+735626 None:intergenic
CATTTGCAATTGGCATGAAA+CGG 0.523120 8.2:+736020 None:intergenic
CGATGAAGATACATTGTAAG+AGG 0.530199 8.2:+735791 None:intergenic
ATGGAATATGGAAATTTAGG+GGG 0.530290 8.2:-735707 MS.gene95097:CDS
AGTTGAACCATTGGGAAAGA+GGG 0.531621 8.2:-735732 MS.gene95097:CDS
CCAGAAGAATTGGTGTTGGT+GGG 0.532173 8.2:+737923 None:intergenic
GAGTTGAACCATTGGGAAAG+AGG 0.533551 8.2:-735733 MS.gene95097:CDS
TCCATACCCCTCTTTCCCAA+TGG 0.539795 8.2:+735725 None:intergenic
CTCAATGAGAGTTGAACCAT+TGG 0.541003 8.2:-735741 MS.gene95097:CDS
CAATGGTTCAACTCTCATTG+AGG 0.552356 8.2:+735742 None:intergenic
CATATTGGTCATCCAAATGG+AGG 0.553538 8.2:-735668 MS.gene95097:CDS
TGGAATATGGAAATTTAGGG+GGG 0.554385 8.2:-735706 MS.gene95097:CDS
ACCATTGGGAAAGAGGGGTA+TGG 0.565142 8.2:-735726 MS.gene95097:CDS
CTGCACCAACTTATATGATG+AGG 0.576417 8.2:-735631 MS.gene95097:CDS
GCAGCAATGGAAACTGGAGG+AGG 0.578206 8.2:-737968 None:intergenic
CTTGCAAATGCTGAAGCCAA+TGG 0.581895 8.2:-735545 MS.gene95097:CDS
GTTCTGTTCCAGCTGATGAG+TGG 0.584456 8.2:+736074 None:intergenic
ATGAATACGAGGCAGCAAGT+AGG 0.584820 8.2:-736115 MS.gene95097:CDS
TTGATGGTGATGATGACCAT+TGG 0.595421 8.2:+735529 None:intergenic
TCAATGAGAGTTGAACCATT+GGG 0.596922 8.2:-735740 MS.gene95097:CDS
TACGATCACCTTCAAGCTCA+CGG 0.607319 8.2:+735765 None:intergenic
AACGTTGTCAGAGAGAGCAA+AGG 0.618049 8.2:-735880 MS.gene95097:CDS
ATATTGGTCATCCAAATGGA+GGG 0.621689 8.2:-735667 MS.gene95097:CDS
CGTACCAGAAGAATTGGTGT+TGG 0.622904 8.2:+737919 None:intergenic
TATGGAATATGGAAATTTAG+GGG 0.625046 8.2:-735708 MS.gene95097:CDS
AAGACAATGAATGCATTGTG+AGG 0.625324 8.2:-736051 MS.gene95097:CDS
CCAACTTATATGATGAGGGA+TGG 0.628590 8.2:-735626 MS.gene95097:CDS
CAGAAGAATTGGTGTTGGTG+GGG 0.631467 8.2:+737924 None:intergenic
AGACAATGAATGCATTGTGA+GGG 0.637888 8.2:-736050 MS.gene95097:CDS
CAGCAATGGAAACTGGAGGA+GGG 0.648465 8.2:-737967 None:intergenic
TGCACCAACTTATATGATGA+GGG 0.648613 8.2:-735630 MS.gene95097:CDS
GGATGACCAATATGAAACTG+TGG 0.661508 8.2:+735677 None:intergenic
GTTGAACCATTGGGAAAGAG+GGG 0.669657 8.2:-735731 MS.gene95097:CDS
CAGTTTCTGAGATGAATACG+AGG 0.679638 8.2:-736126 MS.gene95097:CDS
CCAGCAGCAATGGAAACTGG+AGG 0.696065 8.2:-737971 None:intergenic
GATGACCAATATGAAACTGT+GGG 0.700290 8.2:+735678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTCAAACTTAAGTTAT+GGG + chr8.2:736459-736478 None:intergenic 15.0%
!! ATACATTAGTATATACTTTA+AGG - chr8.2:735733-735752 MS.gene95097:CDS 15.0%
!! TGATTACAAAGTTAATATTA+TGG - chr8.2:737283-737302 MS.gene95097:intron 15.0%
!!! TTAATTAAATATTTCTGAGA+TGG - chr8.2:737306-737325 MS.gene95097:intron 15.0%
!! AACAAACAAACCAATAAAAA+CGG + chr8.2:736677-736696 None:intergenic 20.0%
!! ATTACTATGATCATAATACA+AGG - chr8.2:736201-736220 MS.gene95097:intron 20.0%
!! CAATATTCAAACTTAAGTTA+TGG + chr8.2:736460-736479 None:intergenic 20.0%
!!! AAAAGAAAAAGGCATAAAAA+AGG - chr8.2:736647-736666 MS.gene95097:intron 20.0%
!!! AAAGAAAAAGGCATAAAAAA+GGG - chr8.2:736648-736667 MS.gene95097:intron 20.0%
!!! AACCACTTTTTGATAATTTT+TGG - chr8.2:737050-737069 MS.gene95097:intron 20.0%
!!! ATTTGTTGATATTTTGCATA+AGG - chr8.2:735905-735924 MS.gene95097:CDS 20.0%
!!! TGAATTGTGATTATGTATTT+TGG - chr8.2:736101-736120 MS.gene95097:CDS 20.0%
!!! TGTTTGAATACACATATTTT+GGG + chr8.2:736559-736578 None:intergenic 20.0%
! CATAGTGATAAGATAGTTAA+CGG + chr8.2:736950-736969 None:intergenic 25.0%
! GTATGGAATATGGAAATTTA+GGG - chr8.2:737773-737792 MS.gene95097:intron 25.0%
! GTCCAAAAATTATCAAAAAG+TGG + chr8.2:737055-737074 None:intergenic 25.0%
! TATGGAATATGGAAATTTAG+GGG - chr8.2:737774-737793 MS.gene95097:intron 25.0%
! TATTGTTACTCATCAATAAG+TGG + chr8.2:736343-736362 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG - chr8.2:737173-737192 MS.gene95097:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr8.2:737135-737154 None:intergenic 25.0%
!! GTGTTTGAATACACATATTT+TGG + chr8.2:736560-736579 None:intergenic 25.0%
!!! CAAAACAGAAGTATCTAATT+GGG + chr8.2:736300-736319 None:intergenic 25.0%
!!! TGTGATTATGTATTTTGGAA+TGG - chr8.2:736106-736125 MS.gene95097:CDS 25.0%
AAAACAATGGAGAGAGAAAA+AGG + chr8.2:737122-737141 None:intergenic 30.0%
AAGAAGACAAGCAGATAAAA+AGG + chr8.2:736260-736279 None:intergenic 30.0%
AATAAGAAGTGAGAAAACCA+AGG - chr8.2:737147-737166 MS.gene95097:intron 30.0%
ACGAATGCATGAAAAGAAAA+AGG - chr8.2:736636-736655 MS.gene95097:intron 30.0%
AGATAAAAAGGCTTAAAAGG+TGG + chr8.2:736248-736267 None:intergenic 30.0%
AGCAGATAAAAAGGCTTAAA+AGG + chr8.2:736251-736270 None:intergenic 30.0%
AGTCCAAAAATAGTACATCA+AGG + chr8.2:736485-736504 None:intergenic 30.0%
ATAGTTAACGGTGTATCAAA+TGG + chr8.2:736938-736957 None:intergenic 30.0%
ATCCTTATCACATTTGCAAT+TGG + chr8.2:737475-737494 None:intergenic 30.0%
ATGGAATATGGAAATTTAGG+GGG - chr8.2:737775-737794 MS.gene95097:intron 30.0%
CAATTTCTTAAATGACACTG+TGG + chr8.2:736530-736549 None:intergenic 30.0%
GGTATGGAATATGGAAATTT+AGG - chr8.2:737772-737791 MS.gene95097:intron 30.0%
GTCCAAAAATAGTACATCAA+GGG + chr8.2:736484-736503 None:intergenic 30.0%
GTGAGAAATCAAGATCAAAT+TGG + chr8.2:735698-735717 None:intergenic 30.0%
TGACTCAACACAATATCATA+TGG + chr8.2:735838-735857 None:intergenic 30.0%
TTACTTGCACAACAAAACAA+AGG + chr8.2:736031-736050 None:intergenic 30.0%
TTATTACGTACCAGAAGAAT+TGG + chr8.2:735572-735591 None:intergenic 30.0%
TTTCATATTGGTCATCCAAA+TGG - chr8.2:737811-737830 MS.gene95097:intron 30.0%
! CCAATTAGATACTTCTGTTT+TGG - chr8.2:736298-736317 MS.gene95097:intron 30.0%
!! AAAAGGGAAACCGTTTTTAT+TGG - chr8.2:736664-736683 MS.gene95097:intron 30.0%
!! CCAAAACAGAAGTATCTAAT+TGG + chr8.2:736301-736320 None:intergenic 30.0%
!! TTGGTTTTCTCACTTCTTAT+TGG + chr8.2:737148-737167 None:intergenic 30.0%
!!! TTCTTTTTTCTTTGCTGTGA+AGG - chr8.2:735665-735684 MS.gene95097:CDS 30.0%
AACAGAGGAATCAGAACTAA+AGG + chr8.2:736741-736760 None:intergenic 35.0%
AACCTTGGAAAAGAAGATGA+TGG - chr8.2:736065-736084 MS.gene95097:CDS 35.0%
AAGACAATGAATGCATTGTG+AGG - chr8.2:737431-737450 MS.gene95097:intron 35.0%
AGACAATGAATGCATTGTGA+GGG - chr8.2:737432-737451 MS.gene95097:intron 35.0%
ATATTGGTCATCCAAATGGA+GGG - chr8.2:737815-737834 MS.gene95097:intron 35.0%
CAGAACTAAAGGACAAAAAG+AGG + chr8.2:736730-736749 None:intergenic 35.0%
CATTTGCAATTGGCATGAAA+CGG + chr8.2:737465-737484 None:intergenic 35.0%
CCTTTAATCGCATGCAATTA+GGG - chr8.2:736704-736723 MS.gene95097:intron 35.0%
CGATGAAGATACATTGTAAG+AGG + chr8.2:737694-737713 None:intergenic 35.0%
CTAAGACTAAGACTATAGGT+AGG + chr8.2:736813-736832 None:intergenic 35.0%
GATGACCAATATGAAACTGT+GGG + chr8.2:737807-737826 None:intergenic 35.0%
TCAATGAGAGTTGAACCATT+GGG - chr8.2:737742-737761 MS.gene95097:intron 35.0%
TCCTTTAATCGCATGCAATT+AGG - chr8.2:736703-736722 MS.gene95097:intron 35.0%
TGCACCAACTTATATGATGA+GGG - chr8.2:737852-737871 MS.gene95097:intron 35.0%
TGCCAATTGCAAATGTGATA+AGG - chr8.2:737470-737489 MS.gene95097:intron 35.0%
TGGAATATGGAAATTTAGGG+GGG - chr8.2:737776-737795 MS.gene95097:intron 35.0%
TTGATTACTTGAGCAAGGTT+CGG - chr8.2:736584-736603 MS.gene95097:intron 35.0%
TTGTCTTCTTTCACTCTTTC+AGG - chr8.2:736270-736289 MS.gene95097:intron 35.0%
TTTGTCCCACAGTTTCATAT+TGG - chr8.2:737799-737818 MS.gene95097:intron 35.0%
! AAAGAAGATGATGGCGTAAA+TGG - chr8.2:736074-736093 MS.gene95097:CDS 35.0%
! AAGAAGATGATGGCGTAAAT+GGG - chr8.2:736075-736094 MS.gene95097:CDS 35.0%
! AAGAGTGTGAAAACTTGTCA+TGG + chr8.2:736427-736446 None:intergenic 35.0%
! GTCCCTTGATGTACTATTTT+TGG - chr8.2:736479-736498 MS.gene95097:intron 35.0%
! TCATCAGAGATTTTTGCATG+TGG + chr8.2:737517-737536 None:intergenic 35.0%
! TTTGTTGTGCAAGTAAAGCA+AGG - chr8.2:736035-736054 MS.gene95097:CDS 35.0%
!! ACAGAAGTATCTAATTGGGT+TGG + chr8.2:736296-736315 None:intergenic 35.0%
AACTGCAGAAGATGTGCTTT+GGG - chr8.2:737633-737652 MS.gene95097:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr8.2:737112-737131 None:intergenic 40.0%
AGTTGAACCATTGGGAAAGA+GGG - chr8.2:737750-737769 MS.gene95097:intron 40.0%
AGTTGAAGAGAGAACGAAAG+AGG + chr8.2:736894-736913 None:intergenic 40.0%
CAATGGTTCAACTCTCATTG+AGG + chr8.2:737743-737762 None:intergenic 40.0%
CACAACAAAACAAAGGTGAC+TGG + chr8.2:736024-736043 None:intergenic 40.0%
CATATTGGTCATCCAAATGG+AGG - chr8.2:737814-737833 MS.gene95097:intron 40.0%
CCAACTTATATGATGAGGGA+TGG - chr8.2:737856-737875 MS.gene95097:intron 40.0%
CCATCCCTCATCATATAAGT+TGG + chr8.2:737859-737878 None:intergenic 40.0%
CCCTAATTGCATGCGATTAA+AGG + chr8.2:736707-736726 None:intergenic 40.0%
CGCAATTGATTACTTGAGCA+AGG - chr8.2:736579-736598 MS.gene95097:intron 40.0%
CTCAATGAGAGTTGAACCAT+TGG - chr8.2:737741-737760 MS.gene95097:intron 40.0%
CTGCACCAACTTATATGATG+AGG - chr8.2:737851-737870 MS.gene95097:intron 40.0%
GACAACTTTGTTGACAACCT+TGG + chr8.2:737167-737186 None:intergenic 40.0%
GAGTACATCAGCTTCATAAC+TGG - chr8.2:737568-737587 MS.gene95097:intron 40.0%
GATCTTGATTTCTCACATGC+AGG - chr8.2:735702-735721 MS.gene95097:CDS 40.0%
GGATGACCAATATGAAACTG+TGG + chr8.2:737808-737827 None:intergenic 40.0%
GGCTTAAAAGGTGGTAATAG+TGG + chr8.2:736239-736258 None:intergenic 40.0%
TAACTGCAGAAGATGTGCTT+TGG - chr8.2:737632-737651 MS.gene95097:intron 40.0%
TGGGCTAAGACTAAGACTAT+AGG + chr8.2:736817-736836 None:intergenic 40.0%
! AGACTATAGGTAGGTGTTGT+TGG + chr8.2:736804-736823 None:intergenic 40.0%
! TCAGAGATTTTTGCATGTGG+TGG + chr8.2:737514-737533 None:intergenic 40.0%
!! ATCCAAATGGAGGGTATTAC+GGG - chr8.2:737824-737843 MS.gene95097:intron 40.0%
!! CAGTTTCTGAGATGAATACG+AGG - chr8.2:737356-737375 MS.gene95097:intron 40.0%
!! CATCCAAATGGAGGGTATTA+CGG - chr8.2:737823-737842 MS.gene95097:intron 40.0%
!! GACTATAGGTAGGTGTTGTT+GGG + chr8.2:736803-736822 None:intergenic 40.0%
!! TTGATGGTGATGATGACCAT+TGG + chr8.2:737956-737975 None:intergenic 40.0%
AACAATAGCCACTCATCAGC+TGG - chr8.2:737400-737419 MS.gene95097:intron 45.0%
AACGTTGTCAGAGAGAGCAA+AGG - chr8.2:737602-737621 MS.gene95097:intron 45.0%
AGAGGCAATGACAAGTAGGA+TGG + chr8.2:736876-736895 None:intergenic 45.0%
ATGAATACGAGGCAGCAAGT+AGG - chr8.2:737367-737386 MS.gene95097:intron 45.0%
CAAAGGTGACTGGAGTGATA+TGG + chr8.2:736014-736033 None:intergenic 45.0%
CAATGACAAGTAGGATGGGT+CGG + chr8.2:736871-736890 None:intergenic 45.0%
CCCAATTAGAGAGAGAGAGT+GGG + chr8.2:736836-736855 None:intergenic 45.0%
CCCACTCTCTCTCTCTAATT+GGG - chr8.2:736833-736852 MS.gene95097:intron 45.0%
CGAAAGAGGCAATGACAAGT+AGG + chr8.2:736880-736899 None:intergenic 45.0%
CGTACCAGAAGAATTGGTGT+TGG + chr8.2:735566-735585 None:intergenic 45.0%
CTGAGATGGATATTGCAGCA+GGG - chr8.2:737320-737339 MS.gene95097:intron 45.0%
CTTGCAAATGCTGAAGCCAA+TGG - chr8.2:737937-737956 MS.gene95097:CDS 45.0%
CTTTGGGCTATGAGTAAGCT+TGG - chr8.2:737649-737668 MS.gene95097:intron 45.0%
GAGGCAATGACAAGTAGGAT+GGG + chr8.2:736875-736894 None:intergenic 45.0%
GAGTTGAACCATTGGGAAAG+AGG - chr8.2:737749-737768 MS.gene95097:intron 45.0%
GTGCAAGTAAAGCAAGGCAA+CGG - chr8.2:736041-736060 MS.gene95097:CDS 45.0%
GTTGAACCATTGGGAAAGAG+GGG - chr8.2:737751-737770 MS.gene95097:intron 45.0%
TACGATCACCTTCAAGCTCA+CGG + chr8.2:737720-737739 None:intergenic 45.0%
TGTACTCAGACACACACTCT+TGG + chr8.2:737555-737574 None:intergenic 45.0%
TTCCCGTAATACCCTCCATT+TGG + chr8.2:737829-737848 None:intergenic 45.0%
! CGCCATCATCTTCTTTTCCA+AGG + chr8.2:736070-736089 None:intergenic 45.0%
! GGAAAGAGGGGTATGGAATA+TGG - chr8.2:737763-737782 MS.gene95097:intron 45.0%
! GTAGCTTTTCTCGAGAACAG+AGG + chr8.2:736756-736775 None:intergenic 45.0%
! TCTGAGATGGATATTGCAGC+AGG - chr8.2:737319-737338 MS.gene95097:intron 45.0%
!! ACCAGAAGAATTGGTGTTGG+TGG + chr8.2:735563-735582 None:intergenic 45.0%
!! ATAGGTAGGTGTTGTTGGGA+GGG + chr8.2:736799-736818 None:intergenic 45.0%
!! CAGAAGAATTGGTGTTGGTG+GGG + chr8.2:735561-735580 None:intergenic 45.0%
!! CCAGAAGAATTGGTGTTGGT+GGG + chr8.2:735562-735581 None:intergenic 45.0%
!! TATAGGTAGGTGTTGTTGGG+AGG + chr8.2:736800-736819 None:intergenic 45.0%
AAGCAAGGCAACGGAAACCT+TGG - chr8.2:736050-736069 MS.gene95097:CDS 50.0%
ACCATTGGGAAAGAGGGGTA+TGG - chr8.2:737756-737775 MS.gene95097:intron 50.0%
AGGTGACTGGAGTGATATGG+TGG + chr8.2:736011-736030 None:intergenic 50.0%
CATCGTTACCGTGAGCTTGA+AGG - chr8.2:737709-737728 MS.gene95097:intron 50.0%
CCCACCAACACCAATTCTTC+TGG - chr8.2:735559-735578 MS.gene95097:CDS 50.0%
GAAACTGGAGGAGGGTTTCA+TGG - chr8.2:735523-735542 MS.gene95097:CDS 50.0%
GCCCAATTAGAGAGAGAGAG+TGG + chr8.2:736837-736856 None:intergenic 50.0%
GCCCACTCTCTCTCTCTAAT+TGG - chr8.2:736832-736851 MS.gene95097:intron 50.0%
GTTCTGTTCCAGCTGATGAG+TGG + chr8.2:737411-737430 None:intergenic 50.0%
TCCATACCCCTCTTTCCCAA+TGG + chr8.2:737760-737779 None:intergenic 50.0%
TGACTGGAGTGATATGGTGG+TGG + chr8.2:736008-736027 None:intergenic 50.0%
TGGAGGCTCATCTCATTCTC+AGG - chr8.2:737912-737931 MS.gene95097:intron 50.0%
ACAAATGCTGCTGCTGCTGC+TGG - chr8.2:737892-737911 MS.gene95097:intron 55.0%
TGACAAGTAGGATGGGTCGG+TGG + chr8.2:736868-736887 None:intergenic 55.0%
!! AGTGATATGGTGGTGGAGCG+TGG + chr8.2:736001-736020 None:intergenic 55.0%
!! TGGTGTTGGTGGGGAGTTTG+CGG + chr8.2:735552-735571 None:intergenic 55.0%
AATGCTGCTGCTGCTGCTGG+AGG - chr8.2:737895-737914 MS.gene95097:intron 60.0%
AGTAGGATGGGTCGGTGGTG+AGG + chr8.2:736863-736882 None:intergenic 60.0%
GTAGGATGGGTCGGTGGTGA+GGG + chr8.2:736862-736881 None:intergenic 60.0%
TAGGATGGGTCGGTGGTGAG+GGG + chr8.2:736861-736880 None:intergenic 60.0%
AGGATGGGTCGGTGGTGAGG+GGG + chr8.2:736860-736879 None:intergenic 65.0%
! GTTGGGAGGGAGCGTGTGTC+AGG + chr8.2:736786-736805 None:intergenic 65.0%
GGATGGGTCGGTGGTGAGGG+GGG + chr8.2:736859-736878 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 735520 737984 735520 ID=MS.gene95097
chr8.2 mRNA 735520 737984 735520 ID=MS.gene95097.t1;Parent=MS.gene95097
chr8.2 exon 737924 737984 737924 ID=MS.gene95097.t1.exon1;Parent=MS.gene95097.t1
chr8.2 CDS 737924 737984 737924 ID=cds.MS.gene95097.t1;Parent=MS.gene95097.t1
chr8.2 exon 735520 736166 735520 ID=MS.gene95097.t1.exon2;Parent=MS.gene95097.t1
chr8.2 CDS 735520 736166 735520 ID=cds.MS.gene95097.t1;Parent=MS.gene95097.t1
Gene Sequence

>MS.gene95097

ATGGAAACTGGAGGAGGGTTTCATGGCTACCGCAAACTCCCCACCAACACCAATTCTTCTGGTACGTAATAAATAAACTATAAATATAAAACAAAAAATGCTCTTCGAATGTTTCTTCTCTATGTGACATTTGTTTTGTGTTTTTTTCTTTTTTCTTTGCTGTGAAGGTTAACATCCAATTTGATCTTGATTTCTCACATGCAGGATAATATTATACATTAGTATATACTTTAAGGTATATAATATATTTCAGTGTGCGTGTATAGTAGTGACAGATGCATGCATGATATTCATCTCTCTTATATACTATTCAAACCATATGATATTGTGTTGAGTCATCTTTAATTTAGTAGAATGATCAGTTTTTTAATTTTCTAATACGTCAATTTGTTGATATTTTGCATAAGGTCTGAATTCTTGTTTTCTATGTTTACACAAGATTTCTTTCTCTATATTTTTCTTTCGTCTAAGTGATCTACCACGCTCCACCACCATATCACTCCAGTCACCTTTGTTTTGTTGTGCAAGTAAAGCAAGGCAACGGAAACCTTGGAAAAGAAGATGATGGCGTAAATGGGTTGTGAATTGTGATTATGTATTTTGGAATGGAACAAGTGTCATGCATGCATGCATAAAATCATTGACTTTAGAGTTACAAGTGTCTTTCATGCATTCTTCAATATTACTATGATCATAATACAAGGATCTGTCTGTCTCCACTATTACCACCTTTTAAGCCTTTTTATCTGCTTGTCTTCTTTCACTCTTTCAGGCCAACCCAATTAGATACTTCTGTTTTGGATAGATATAACAGTACTAGCCACTTATTGATGAGTAACAATAATGTCAAACTTATTTCACAAGCAAGTTTTAAATTTGTTTTCAAGTTATATATAGCACTGCACCATGACAAGTTTTCACACTCTTCTTATGTTTCCCATAACTTAAGTTTGAATATTGTCCCTTGATGTACTATTTTTGGACTAATTAGAGTGAGTTTAACATAACCACAGTGTCATTTAAGAAATTGATCTCTCCCAAAATATGTGTATTCAAACACGCAATTGATTACTTGAGCAAGGTTCGGTTGTATCTTTGAAATGCGTATTTAGAGTGACGAATGCATGAAAAGAAAAAGGCATAAAAAAGGGAAACCGTTTTTATTGGTTTGTTTGTTTTTGTCTCCTTTAATCGCATGCAATTAGGGCCTCTTTTTGTCCTTTAGTTCTGATTCCTCTGTTCTCGAGAAAAGCTACAGAAACACCTGACACACGCTCCCTCCCAACAACACCTACCTATAGTCTTAGTCTTAGCCCACTCTCTCTCTCTAATTGGGCCCCCCTCACCACCGACCCATCCTACTTGTCATTGCCTCTTTCGTTCTCTCTTCAACTATAATCTCACGTGTACACATACCATTTGATACACCGTTAACTATCTTATCACTATGTTTCATTTCATTCATACATGTGCATTTATTTTCATTTTAATGAAGAGTAATGTTATTTAGATGAGAAATGATATTTTGACAACCACTTTTTGATAATTTTTGGACAACTTTATCTCTCATACTCACATGATGTTGTTATCCTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATAAGAAGTGAGAAAACCAAGGTTGTCAACAAAGTTGTCATTAAATGGATGTCAAAATATGATTGCTCTTTAAGATAATCATTTTTTCTACACATGTTTAATCATATTAAAAATATTTAATTTGTTTAATTCATTTGATTACAAAGTTAATATTATGGTTAATTAAATATTTCTGAGATGGATATTGCAGCAGGGACGTTGAAGCTATCAGTTTCTGAGATGAATACGAGGCAGCAAGTAGGAGAACAGAACAACAATAGCCACTCATCAGCTGGAACAGAACAAGACAATGAATGCATTGTGAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGCAAGATTCTACCACCACATGCAAAAATCTCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCTGAGTACATCAGCTTCATAACTGGAGAAGCTAATGAACGTTGTCAGAGAGAGCAAAGGAAGACAATAACTGCAGAAGATGTGCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTTACAATGTATCTTCATCGTTACCGTGAGCTTGAAGGTGATCGTACCTCAATGAGAGTTGAACCATTGGGAAAGAGGGGTATGGAATATGGAAATTTAGGGGGGTTTGTCCCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTACGGGAATGCTGCACCAACTTATATGATGAGGGATGGTAATAATAATGCAACAAATGCTGCTGCTGCTGCTGGAGGCTCATCTCATTCTCAGGCACTTGCAAATGCTGAAGCCAATGGTCATCATCACCATCAATATAAATGA
Protein sequence

>MS.gene95097.t1

METGGGFHGYRKLPTNTNSSAGTLKLSVSEMNTRQQVGEQNNNSHSSAGTEQDNECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMEYGNLGGFVPQFHIGHPNGGYYGNAAPTYMMRDGNNNATNAAAAAGGSSHSQALANAEANGHHHHQYK