AlfalfaGEDB | MS.gene95257

M. sativa cultivar XinJiangDaYe / MS.gene95257

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95257.t1	GAU37470.1	67	91	15	3	53	131	27	114	2.60E-21	111.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95257.t1	Q8LG10	54.3	81	31	3	54	131	40	117	5.0e-13	75.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95257.t1	A0A2Z6NLR0	67.0	91	15	3	53	131	27	114	1.9e-21	111.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene95257.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95257.t1	MTR_4g121110	82.796	93	2	3	52	131	27	118	1.70e-44	142
MS.gene95257.t1	MTR_7g112330	45.977	87	33	4	54	131	21	102	1.67e-14	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95257.t1	AT5G49300	62.667	75	20	4	54	124	35	105	1.13e-19	79.3
MS.gene95257.t1	AT3G06740	54.321	81	31	3	54	131	40	117	2.54e-19	78.6
MS.gene95257.t1	AT4G16141	90.625	32	2	1	54	85	36	66	7.21e-14	65.5
MS.gene95257.t1	AT3G16870	58.929	56	14	2	54	101	41	95	6.40e-13	62.8
MS.gene95257.t1	AT4G36620	54.902	51	22	1	55	105	75	124	2.29e-11	58.9

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Find 37 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCTCTATGGCGTGG+TGG	0.672135	8.4:+60545703	MS.gene95257:CDS
AACGAAGAAGGAACAAGAAA+GGG	0.398579	8.4:+60545871	MS.gene95257:CDS
AAGAAAACATGTGCTGATTG+CGG	0.615546	8.4:+60545673	MS.gene95257:CDS
AAGAAATTGATAGAGTTAAA+TGG	0.194175	8.4:-60543238	None:intergenic
AAGAGTAACAGTGGCGGTGG+CGG	0.533652	8.4:+60545898	MS.gene95257:CDS
AAGCAGAGATTATTGAATTT+AGG	0.186034	8.4:+60545952	MS.gene95257:CDS
AATGCTTGCGGGATAAGCAA+AGG	0.651532	8.4:+60545844	MS.gene95257:CDS
ACCACGCCATAGAGGGGTTT+TGG	0.316833	8.4:-60545701	None:intergenic
ACGAAGAAGGAACAAGAAAG+GGG	0.621165	8.4:+60545872	MS.gene95257:CDS
AGAAATTGATAGAGTTAAAT+GGG	0.358975	8.4:-60543237	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGAGAGAAAATCTTACA+AGG	+	chr8.4:60544602-60544621	MS.gene95257:intron	30.0%
AACACACAATAAAGACATGA+GGG	+	chr8.4:60545429-60545448	MS.gene95257:intron	30.0%
AAGGTATGAAACGTATATGT+TGG	-	chr8.4:60544644-60544663	None:intergenic	30.0%
AGATGATGAAAGATGTCTAT+TGG	+	chr8.4:60545283-60545302	MS.gene95257:intron	30.0%
AGTCACTAAAACGATGAATT+TGG	-	chr8.4:60544058-60544077	None:intergenic	30.0%
ATACATTCATCCTAACGTAA+AGG	+	chr8.4:60544335-60544354	MS.gene95257:intron	30.0%
ATGAAATGATCACAGTGATA+AGG	+	chr8.4:60545472-60545491	MS.gene95257:intron	30.0%
CACAACTTTCCCTAATAATT+AGG	-	chr8.4:60543331-60543350	None:intergenic	30.0%
CGAAACCAAAAAGTAACTTA+AGG	+	chr8.4:60544487-60544506	MS.gene95257:intron	30.0%
CTAATTATTAGGGAAAGTTG+TGG	+	chr8.4:60543329-60543348	MS.gene95257:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	60543221	60545999	60543221	ID=MS.gene95257
chr8.4	mRNA	60543221	60545999	60543221	ID=MS.gene95257.t1;Parent=MS.gene95257
chr8.4	exon	60543221	60543263	60543221	ID=MS.gene95257.t1.exon1;Parent=MS.gene95257.t1
chr8.4	CDS	60543221	60543263	60543221	ID=cds.MS.gene95257.t1;Parent=MS.gene95257.t1
chr8.4	exon	60543340	60543391	60543340	ID=MS.gene95257.t1.exon2;Parent=MS.gene95257.t1
chr8.4	CDS	60543340	60543391	60543340	ID=cds.MS.gene95257.t1;Parent=MS.gene95257.t1
chr8.4	exon	60545609	60545744	60545609	ID=MS.gene95257.t1.exon3;Parent=MS.gene95257.t1
chr8.4	CDS	60545609	60545744	60545609	ID=cds.MS.gene95257.t1;Parent=MS.gene95257.t1
chr8.4	exon	60545835	60545999	60545835	ID=MS.gene95257.t1.exon4;Parent=MS.gene95257.t1
chr8.4	CDS	60545835	60545999	60545835	ID=cds.MS.gene95257.t1;Parent=MS.gene95257.t1

Gene Sequence

>MS.gene95257

ATGTCACGCACCCAAACCCATTTAACTCTATCAATTTCTTTGTGTTAATTATAATGTTGTTTCTGGATTTAGATCCTCTTTAAGTTGATAATTTTTAATTAGATATTCCTAATTATTAGGGAAAGTTGTGGTAGACCTTGACTTGAGGAGGGATGAAGAGAAATCACTCAAGTCTAAACGAAATTCTTGCCTTTCCACTCATTCACAAGAATATTAATAGAACTCTCTTTTTTTTTTATCTTTAGTAATTTTCTAAATAGTAAGATAATATTTTTTTAGGTGTTTTTCGTTTATACTTCTCCTTGTTTCCCATATTTATACTTTCATTTATACTTTTGGTTAGTTCTTTGCCTTTCATATTGTTTTGAAGTATTTTCCCTATTCATAAAATAGTTTTCCAAACTAGATTGTCCTTAGCGAATTGTGTAATATTCTCGTTTGGTTTAATCTTGATTATTTATCATAGGTTTTACCTATTAGTTTAATAAAATCCGAAACATGTCAAATTATTAAGAGGTTTGGTACAATTTAGATTATTGAAACCAAAATATATTTTTTATGGTCCAAGTTATTAGGAGTATTTTTAAAGAGTGTCTTGTAGTACTCGTCAACAAGACCTAAAGAAAAATTCTCATTAATTATTAAAGTGGTATTATTAATATTTTTACAATTGTTCCTAAGAAAATTTTAACTCGAAAAAAAAAAACTGATCATTTGGTAATTTTTGTCGTATGTCTCTCCCAATGGAACCATGACAAATGGATCAAACCATATCATATTTTTTCTGGTCAAGTACAAACCATATCATATCATATTATTCTCTCAAAAAGGAATCCAAATTCATCGTTTTAGTGACTCATGTGAACTCGTGTTTTCCATTCAGGGACAACTTTACAACTAGGCTTAATTACTCTTTTGGTACCTTAACTTATTTTTTGGTTTCGTTTTGGTCCCTTAAGTTATTAACGTTACAATTTGGTCCCTTAACTTACTTTTTGGTTTTGTTTTGGTCCCTTAACTATTAAAAGTTTCGTTTTGGTCCCTTAACTTATTTTTTTGTTTCGTTTTGGTCCCTTAACTTATTTTTTGGTTTCGTTTTGGTCCCTTAACTCTAATACATTCATCCTAACGTAAAGGACCAAAGTGGTTGACGGAGGAAGAGTTAAGGGACCAAAACGAAATCAAAAAATAAGTTAAGGACCAAAACGAAACCAAAAAATAAGTTAAGGGACCAAAACGAAACTTTTAATAGTTAAGGGACCAAAACGAAACCAAAAAGTAACTTAAGGGACCAAATTGTAACATTAATAACTTATGGGACCAAAATGTAACCAACAAATAACTTAAGGGACCAAATCATTAATTAAGCCTAAAATCTAATAAACGAGAGAAAATCTTACAAGGCAATCTATTCTCAAAACCAACATATACGTTTCATACCTTTTTTTTAAAACTTAAATTAGCCATCAAAATTAATACCATGAAAAATCAAACCTGAACCCCTGAGAGCAGGGGCGGTTGGCTTCATAGCCATGGGGTAGCATTGGCTACCCCAAAAGAAGAATTTTTTTTGAATAACTGGTATAGGTTTATATGTAGCTACCCCATCAATATTTTATTTGGTTACTTCAAACAATTTTGTTGGTTTAAAGGATGATGATATTGCACAAATATTGATAATATATTTAGTTTAGTGTCAATTATGATTAATTTACGTTCTTACAACTCCATAAAGCTCAACTTTTATAAATAACTATTGTTTAACTTTTATTTTTTTCGTTGTCGTTTCATTAAATATAAGTAAAAATTATTGTAAATTTATTTTACTTATTGATTAAGTTTAATATATTAGTTGTTAAAATATATTTTATTTCTTCTTTATATTTGGCCCCCTCTAAAAAATTGTGCGAGCTTCACCGCTGCCTGAGAGGAGCATATTACAAAGTTTCATATCAATTTATAACTTGATGTTTTTTATTATACGTGTGATTTACTGATTTTTAGAAGTTTTTATAATCTATAATAAATATCACCGGAGAAAGTATCTAAGAATACATGAACGAGATGATGAAAGATGTCTATTGGTTTAATCAAACATTCTTCTAAACTTGAATCAAATTATAAAAATGCAACAACATTAAATCTCTTAAATTAGAGATTTGTGATCCTACTCAACTTGATAAATTGCACCAAAAAGGAAATTTAACTAACACACAATAAAGACATGAGGGAGAAATGATTTAATAATGAAATGAAATGATCACAGTGATAAGGTAAGTATTATTGTTGATCACTTAATTAACCTAATCACACACTTCACTTCAACCATTCATGATTTAATAGTTCAAATCACTAATCAATCTTGTTTTGTTCATTTTTCATTTTCAGGTATCAGAAGGTGAAGATTCAAACCCTAACGCCGCCGTTTCATCAGATAACAACAATCCAACCAAAGAAAACATGTGCTGATTGCGGAACTTCCAAAACCCCTCTATGGCGTGGTGGTCCTCCTGCAGGACCAAAGGTAATTTAATTAATCACTAATCAATCGATTTGATGATTGATCACACTAATTTTATTCTTGATCTGATCTAATATGTGATTAATTATGCAGTCACTGTGCAATGCTTGCGGGATAAGCAAAGGAAACAACGAAGAAGGAACAAGAAAGGGGAAAAAGAGTAACAGTGGCGGTGGCGGTGGAAGCAAAGTTGGTGATAATTTGAACATGAAGCAGAGATTATTGAATTTAGGGAAAGAAGTGTTTATGAATCAATGA

Protein sequence

>MS.gene95257.t1

MSRTQTHLTLSISLWKVVVDLDLRRDEEKSLKYQKVKIQTLTPPFHQITTIQPKKTCADCGTSKTPLWRGGPPAGPKSLCNACGISKGNNEEGTRKGKKSNSGGGGGSKVGDNLNMKQRLLNLGKEVFMNQ