Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95330.t1 | KEH40658.1 | 93.4 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 2.20E-81 | 311.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95330.t1 | A0A072VGU3 | 93.4 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 1.6e-81 | 311.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene95330.t1 | TF | PLATZ |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95330.t1 | MTR_1g032880 | 93.413 | 167 | 9 | 1 | 1 | 167 | 1 | 165 | 1.11e-113 | 320 |
MS.gene95330.t1 | MTR_8g105930 | 41.327 | 196 | 69 | 2 | 16 | 165 | 46 | 241 | 4.10e-42 | 140 |
MS.gene95330.t1 | MTR_8g097310 | 31.788 | 151 | 73 | 4 | 27 | 159 | 13 | 151 | 8.02e-14 | 65.5 |
MS.gene95330.t1 | MTR_2g055210 | 41.379 | 87 | 45 | 2 | 27 | 113 | 147 | 227 | 6.01e-13 | 65.5 |
MS.gene95330.t1 | MTR_4g094680 | 38.202 | 89 | 52 | 2 | 26 | 112 | 66 | 153 | 4.23e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene95330.t1 | AT2G01818 | 45.055 | 91 | 47 | 2 | 25 | 113 | 58 | 147 | 3.24e-17 | 75.9 |
MS.gene95330.t1 | AT2G01818 | 43.210 | 81 | 43 | 2 | 35 | 113 | 4 | 83 | 1.51e-12 | 62.4 |
MS.gene95330.t1 | AT3G60670 | 42.045 | 88 | 46 | 2 | 26 | 113 | 51 | 133 | 1.66e-12 | 63.5 |
MS.gene95330.t1 | AT4G17900 | 30.496 | 141 | 83 | 4 | 27 | 162 | 80 | 210 | 1.71e-11 | 60.8 |
MS.gene95330.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 47 | 130 | 2.43e-11 | 60.5 |
MS.gene95330.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 50 | 133 | 2.44e-11 | 60.5 |
MS.gene95330.t1 | AT2G12646 | 39.326 | 89 | 49 | 2 | 26 | 114 | 50 | 133 | 2.44e-11 | 60.5 |
MS.gene95330.t1 | AT4G17900 | 30.714 | 140 | 82 | 4 | 27 | 161 | 66 | 195 | 2.62e-11 | 60.1 |
MS.gene95330.t1 | AT1G31040 | 35.632 | 87 | 50 | 2 | 26 | 112 | 63 | 143 | 5.01e-11 | 59.7 |
Find 21 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGACTCAGCCTCTGAATTT+TGG | 0.202823 | 1.3:-17966986 | None:intergenic |
TACCAAATGGAAAAGAAGAT+TGG | 0.357613 | 1.3:+17964750 | MS.gene95330:CDS |
TGTTGTTACCTTGCATTTGA+TGG | 0.360512 | 1.3:-17966578 | None:intergenic |
TGTCTTTGCTACTGCTAGTC+GGG | 0.379634 | 1.3:-17966476 | None:intergenic |
ACCCTTTCAACAGATTCATT+TGG | 0.404698 | 1.3:-17967026 | None:intergenic |
TAGATTTCAATTGAGGAGCT+TGG | 0.458055 | 1.3:+17966945 | MS.gene95330:intron |
ATGTCTTTGCTACTGCTAGT+CGG | 0.459833 | 1.3:-17966477 | None:intergenic |
AAACTAGAGATAGATCTCAT+AGG | 0.499860 | 1.3:-17967080 | None:intergenic |
GTGAAGCGTAGTTTACCAAA+TGG | 0.503152 | 1.3:+17964737 | MS.gene95330:CDS |
GTATTGTTAGATTTCAATTG+AGG | 0.514212 | 1.3:+17966938 | MS.gene95330:intron |
ATCTCATTCACTTCATCGAA+AGG | 0.526413 | 1.3:+17964889 | MS.gene95330:CDS |
AACCAAATGAATCTGTTGAA+AGG | 0.544922 | 1.3:+17967024 | MS.gene95330:CDS |
ACCAAATGAATCTGTTGAAA+GGG | 0.545715 | 1.3:+17967025 | MS.gene95330:CDS |
AGCAATCAAAATACTTGAGT+AGG | 0.578161 | 1.3:-17964958 | None:intergenic |
TGAATCTCAGAAAGCGTCCA+AGG | 0.581640 | 1.3:+17967048 | MS.gene95330:CDS |
ACATCTCAAAAGCAAGCTGG+TGG | 0.603751 | 1.3:+17966502 | MS.gene95330:CDS |
TCAACATCTCAAAAGCAAGC+TGG | 0.604147 | 1.3:+17966499 | MS.gene95330:CDS |
GTCTTTGCTACTGCTAGTCG+GGG | 0.609471 | 1.3:-17966475 | None:intergenic |
ATTCTGTTCCATCAAATGCA+AGG | 0.622156 | 1.3:+17966570 | MS.gene95330:CDS |
AAATGATCACCAAAATTCAG+AGG | 0.644619 | 1.3:+17966977 | MS.gene95330:CDS |
GGTGGAATTTGTGAAGAATG+TGG | 0.715683 | 1.3:+17966520 | MS.gene95330:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATAAATTAAGGTTTAT+AGG | - | chr1.3:17965723-17965742 | None:intergenic | 10.0% |
!! | TTATATTGAAATTAATTATG+TGG | - | chr1.3:17966236-17966255 | None:intergenic | 10.0% |
!! | TTCACATTAAATTAAAATAT+AGG | - | chr1.3:17966881-17966900 | None:intergenic | 10.0% |
!!! | TCAATATAAATAAATTTTAC+AGG | - | chr1.3:17966770-17966789 | None:intergenic | 10.0% |
!!! | TGGTTTTTTTTTAAATTATT+AGG | - | chr1.3:17966216-17966235 | None:intergenic | 10.0% |
!!! | TTTTAGATAAATAGTTATTT+TGG | + | chr1.3:17965770-17965789 | MS.gene95330:intron | 10.0% |
!!! | TTTTTTTTTAAATTATTAGG+AGG | - | chr1.3:17966213-17966232 | None:intergenic | 10.0% |
!! | AAAATCTATATATTCATCAA+TGG | - | chr1.3:17965346-17965365 | None:intergenic | 15.0% |
!! | CGATGATATTAAATAAATTA+AGG | - | chr1.3:17965731-17965750 | None:intergenic | 15.0% |
!!! | AATTGTGTAATTTTAAAAGT+AGG | + | chr1.3:17965633-17965652 | MS.gene95330:intron | 15.0% |
!!! | ACTGAATTAAATGTTATTTT+TGG | + | chr1.3:17965525-17965544 | MS.gene95330:intron | 15.0% |
!!! | GAATATATAGATTTTTTAAG+TGG | + | chr1.3:17965351-17965370 | MS.gene95330:intron | 15.0% |
!!! | TTCTTTTCTTCATAATTTTA+TGG | + | chr1.3:17965862-17965881 | MS.gene95330:intron | 15.0% |
!! | AAAATAAATCAACCATAATG+TGG | - | chr1.3:17965298-17965317 | None:intergenic | 20.0% |
!! | ATAAATTAAGGTTTATAGGT+TGG | - | chr1.3:17965719-17965738 | None:intergenic | 20.0% |
!! | TCTATTTATATGGGAAAATT+GGG | - | chr1.3:17965121-17965140 | None:intergenic | 20.0% |
!! | TTCTATTTATATGGGAAAAT+TGG | - | chr1.3:17965122-17965141 | None:intergenic | 20.0% |
!!! | GAATTGATTTACTCAATAAA+TGG | - | chr1.3:17965241-17965260 | None:intergenic | 20.0% |
!!! | TAATTACCACTTTTTTGTTT+TGG | - | chr1.3:17966823-17966842 | None:intergenic | 20.0% |
!!! | TATTGTCTAATTCACAATTT+TGG | + | chr1.3:17965555-17965574 | MS.gene95330:intron | 20.0% |
!!! | TTTTACAAGTTTTAGCTATT+GGG | + | chr1.3:17965476-17965495 | MS.gene95330:intron | 20.0% |
! | AATTGTTGAAATGAATTGTG+CGG | + | chr1.3:17965378-17965397 | MS.gene95330:intron | 25.0% |
! | ACAAAAAAGTGGTAATTAGT+AGG | + | chr1.3:17966825-17966844 | MS.gene95330:intron | 25.0% |
! | AGAAACACTTATAACATGTT+TGG | - | chr1.3:17965846-17965865 | None:intergenic | 25.0% |
! | ATGAAATCAATTACTATCTC+CGG | - | chr1.3:17965145-17965164 | None:intergenic | 25.0% |
! | CAAAAAAGTGGTAATTAGTA+GGG | + | chr1.3:17966826-17966845 | MS.gene95330:intron | 25.0% |
! | CCTAAAATGTGAGTTATTAT+CGG | + | chr1.3:17965794-17965813 | MS.gene95330:intron | 25.0% |
! | GAACTAAAACAAAACAATAC+GGG | - | chr1.3:17966748-17966767 | None:intergenic | 25.0% |
! | GGAACTAAAACAAAACAATA+CGG | - | chr1.3:17966749-17966768 | None:intergenic | 25.0% |
! | GTATTGTTAGATTTCAATTG+AGG | + | chr1.3:17966938-17966957 | MS.gene95330:intron | 25.0% |
! | GTTTCTTAATTGTAATCTGA+TGG | + | chr1.3:17965262-17965281 | MS.gene95330:intron | 25.0% |
!! | AAAACCATATGTTACTTCTA+AGG | - | chr1.3:17966357-17966376 | None:intergenic | 25.0% |
!! | AAACCATATGTTACTTCTAA+GGG | - | chr1.3:17966356-17966375 | None:intergenic | 25.0% |
!! | AAATCATTGATTGACAATGT+TGG | + | chr1.3:17965688-17965707 | MS.gene95330:intron | 25.0% |
!! | TCTCATTAAACTTTTCTTTG+TGG | - | chr1.3:17964817-17964836 | None:intergenic | 25.0% |
!! | TGAAACTGATTCAAAATGTA+AGG | + | chr1.3:17966787-17966806 | MS.gene95330:intron | 25.0% |
!! | TTTTCCCATATAAATAGAAC+CGG | + | chr1.3:17965123-17965142 | MS.gene95330:intron | 25.0% |
!!! | CTTTTACAAGTTTTAGCTAT+TGG | + | chr1.3:17965475-17965494 | MS.gene95330:intron | 25.0% |
!!! | TTGTATTTTGAGCATATTGT+TGG | + | chr1.3:17966059-17966078 | MS.gene95330:intron | 25.0% |
!!! | TTTTGATTGCTCATATATTC+AGG | + | chr1.3:17964970-17964989 | MS.gene95330:CDS | 25.0% |
!!! | TTTTTTTGGTACATGACTAA+TGG | - | chr1.3:17965420-17965439 | None:intergenic | 25.0% |
AAACTAGAGATAGATCTCAT+AGG | - | chr1.3:17967083-17967102 | None:intergenic | 30.0% | |
AAATGATCACCAAAATTCAG+AGG | + | chr1.3:17966977-17966996 | MS.gene95330:CDS | 30.0% | |
AACCAAATGAATCTGTTGAA+AGG | + | chr1.3:17967024-17967043 | MS.gene95330:CDS | 30.0% | |
ACCAAATGAATCTGTTGAAA+GGG | + | chr1.3:17967025-17967044 | MS.gene95330:CDS | 30.0% | |
AGCAATCAAAATACTTGAGT+AGG | - | chr1.3:17964961-17964980 | None:intergenic | 30.0% | |
ATCTCCGGTTCTATTTATAT+GGG | - | chr1.3:17965130-17965149 | None:intergenic | 30.0% | |
CTTGAACTTCACAACTTAAT+TGG | + | chr1.3:17966090-17966109 | MS.gene95330:intron | 30.0% | |
GGATAATTTATGCCACATTA+TGG | + | chr1.3:17965283-17965302 | MS.gene95330:intron | 30.0% | |
TACCAAATGGAAAAGAAGAT+TGG | + | chr1.3:17964750-17964769 | MS.gene95330:CDS | 30.0% | |
TATCATTCATACAATCATCC+AGG | - | chr1.3:17965322-17965341 | None:intergenic | 30.0% | |
TATCTCCGGTTCTATTTATA+TGG | - | chr1.3:17965131-17965150 | None:intergenic | 30.0% | |
TTCAAAATGTAAGGACTACA+AGG | + | chr1.3:17966796-17966815 | MS.gene95330:intron | 30.0% | |
! | ATTGTGGAATCAGTTTTTGT+AGG | + | chr1.3:17964855-17964874 | MS.gene95330:intron | 30.0% |
! | CAATTTGTATCCCTCTATTT+TGG | + | chr1.3:17965597-17965616 | MS.gene95330:intron | 30.0% |
! | CAGTTTTTGTAGGTATGATA+AGG | + | chr1.3:17964865-17964884 | MS.gene95330:intron | 30.0% |
! | CCGATAATAACTCACATTTT+AGG | - | chr1.3:17965797-17965816 | None:intergenic | 30.0% |
! | TTGATGCACTTTTGATAGAT+AGG | + | chr1.3:17964774-17964793 | MS.gene95330:CDS | 30.0% |
!! | ATAAGGGTTGATATTAGGTT+TGG | - | chr1.3:17966134-17966153 | None:intergenic | 30.0% |
!! | ATTGATCTAATTTGCTCTGA+TGG | + | chr1.3:17965215-17965234 | MS.gene95330:intron | 30.0% |
!! | CTATGCTTTTTGTCAATGAA+AGG | + | chr1.3:17966623-17966642 | MS.gene95330:intron | 30.0% |
!! | CTGAATTTTGGTGATCATTT+TGG | - | chr1.3:17966977-17966996 | None:intergenic | 30.0% |
!! | TCAACAAAAGTTGATGTAAC+TGG | + | chr1.3:17965059-17965078 | MS.gene95330:intron | 30.0% |
!! | TGAGAAGAATGTGTTTTGTT+TGG | + | chr1.3:17964832-17964851 | MS.gene95330:intron | 30.0% |
!!! | AATGTGTTTTGTTTGGATTG+TGG | + | chr1.3:17964839-17964858 | MS.gene95330:intron | 30.0% |
!!! | TATGGTTGATTTATTTTGCC+TGG | + | chr1.3:17965301-17965320 | MS.gene95330:intron | 30.0% |
ACCCTTTCAACAGATTCATT+TGG | - | chr1.3:17967029-17967048 | None:intergenic | 35.0% | |
AGCGATTAAAGACACATTTG+AGG | + | chr1.3:17965914-17965933 | MS.gene95330:intron | 35.0% | |
ATCTCATTCACTTCATCGAA+AGG | + | chr1.3:17964889-17964908 | MS.gene95330:CDS | 35.0% | |
ATGACTAACAAGTCGTATGT+AGG | + | chr1.3:17965943-17965962 | MS.gene95330:intron | 35.0% | |
ATTCTGTTCCATCAAATGCA+AGG | + | chr1.3:17966570-17966589 | MS.gene95330:CDS | 35.0% | |
CAACCCTTAGAAGTAACATA+TGG | + | chr1.3:17966350-17966369 | MS.gene95330:intron | 35.0% | |
CAAGGACCAAAACAAAAAAG+TGG | + | chr1.3:17966814-17966833 | MS.gene95330:intron | 35.0% | |
CACGTTGTAAGTACAAAGTT+AGG | - | chr1.3:17966402-17966421 | None:intergenic | 35.0% | |
TAGATTTCAATTGAGGAGCT+TGG | + | chr1.3:17966945-17966964 | MS.gene95330:intron | 35.0% | |
TATGAGGTACATACACACAT+TGG | - | chr1.3:17966327-17966346 | None:intergenic | 35.0% | |
TCTTACCAGACCAAAATAGA+GGG | - | chr1.3:17965610-17965629 | None:intergenic | 35.0% | |
TGTTGTTACCTTGCATTTGA+TGG | - | chr1.3:17966581-17966600 | None:intergenic | 35.0% | |
TTGATCTTTACATGTGTGAG+AGG | - | chr1.3:17966011-17966030 | None:intergenic | 35.0% | |
! | AGCCAATCTTCTTTTCCATT+TGG | - | chr1.3:17964755-17964774 | None:intergenic | 35.0% |
! | CATTGATTGACAATGTTGGA+GGG | + | chr1.3:17965692-17965711 | MS.gene95330:intron | 35.0% |
! | GCACTTTTGATAGATAGGTT+TGG | + | chr1.3:17964779-17964798 | MS.gene95330:intron | 35.0% |
! | TCATTGATTGACAATGTTGG+AGG | + | chr1.3:17965691-17965710 | MS.gene95330:intron | 35.0% |
!! | AATATATGTTGGTGTCGTGT+CGG | + | chr1.3:17966260-17966279 | MS.gene95330:intron | 35.0% |
!! | GCTTCATAAGGGTTGATATT+AGG | - | chr1.3:17966139-17966158 | None:intergenic | 35.0% |
ATCTGTGTCTGTGCTTCATA+AGG | - | chr1.3:17966151-17966170 | None:intergenic | 40.0% | |
ATGAAGCACAGACACAGATA+CGG | + | chr1.3:17966152-17966171 | MS.gene95330:intron | 40.0% | |
ATGTCTTTGCTACTGCTAGT+CGG | - | chr1.3:17966480-17966499 | None:intergenic | 40.0% | |
CAACAAGAACACTGACATGT+CGG | + | chr1.3:17966185-17966204 | MS.gene95330:intron | 40.0% | |
GGTGGAATTTGTGAAGAATG+TGG | + | chr1.3:17966520-17966539 | MS.gene95330:CDS | 40.0% | |
GTCTTACCAGACCAAAATAG+AGG | - | chr1.3:17965611-17965630 | None:intergenic | 40.0% | |
GTGAAGCGTAGTTTACCAAA+TGG | + | chr1.3:17964737-17964756 | MS.gene95330:CDS | 40.0% | |
TCAACATCTCAAAAGCAAGC+TGG | + | chr1.3:17966499-17966518 | MS.gene95330:CDS | 40.0% | |
TCTGTGTCTGTGCTTCATAA+GGG | - | chr1.3:17966150-17966169 | None:intergenic | 40.0% | |
! | ATGACTCAGCCTCTGAATTT+TGG | - | chr1.3:17966989-17967008 | None:intergenic | 40.0% |
! | CTTCTAAGGGTTGATCTATG+AGG | - | chr1.3:17966343-17966362 | None:intergenic | 40.0% |
!!! | TGTATCCCTCTATTTTGGTC+TGG | + | chr1.3:17965602-17965621 | MS.gene95330:intron | 40.0% |
ACATCTCAAAAGCAAGCTGG+TGG | + | chr1.3:17966502-17966521 | MS.gene95330:CDS | 45.0% | |
GATTAGACGTGTCCTGATGT+CGG | - | chr1.3:17966305-17966324 | None:intergenic | 45.0% | |
GTCGGACATGTGTTGTATTC+AGG | - | chr1.3:17966287-17966306 | None:intergenic | 45.0% | |
TACAACACATGTCCGACATC+AGG | + | chr1.3:17966290-17966309 | MS.gene95330:intron | 45.0% | |
TGTCTTTGCTACTGCTAGTC+GGG | - | chr1.3:17966479-17966498 | None:intergenic | 45.0% | |
TTGTTTACTACTCCCTCTGC+TGG | + | chr1.3:17965018-17965037 | MS.gene95330:intron | 45.0% | |
TTTCTCTCAGAACCAGCAGA+GGG | - | chr1.3:17965033-17965052 | None:intergenic | 45.0% | |
! | GTCAGTGTTCTTGTTGTGTC+TGG | - | chr1.3:17966181-17966200 | None:intergenic | 45.0% |
!! | GCTGGTTCTGAGAGAAAGTT+AGG | + | chr1.3:17965036-17965055 | MS.gene95330:intron | 45.0% |
!! | TGAATCTCAGAAAGCGTCCA+AGG | + | chr1.3:17967048-17967067 | MS.gene95330:CDS | 45.0% |
!!! | CTCATAGGAGTGCTTTTCCT+TGG | - | chr1.3:17967068-17967087 | None:intergenic | 45.0% |
!! | AAATACAATTAATAAAAAAT+AGG | - | chr1.3:17966047-17966066 | None:intergenic | 5.0% |
!! | AATACAATTAATAAAAAATA+GGG | - | chr1.3:17966046-17966065 | None:intergenic | 5.0% |
!! | AATATAATTATAATATATGT+TGG | + | chr1.3:17966249-17966268 | MS.gene95330:intron | 5.0% |
!! | ATGATAAAAAATAATTTATT+AGG | - | chr1.3:17966697-17966716 | None:intergenic | 5.0% |
!!! | TCTTTAATTTTTTTTTTTTT+TGG | - | chr1.3:17965434-17965453 | None:intergenic | 5.0% |
CTTTCTCTCAGAACCAGCAG+AGG | - | chr1.3:17965034-17965053 | None:intergenic | 50.0% | |
GTCTTTGCTACTGCTAGTCG+GGG | - | chr1.3:17966478-17966497 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 17964734 | 17967118 | 17964734 | ID=MS.gene95330 |
chr1.3 | mRNA | 17964734 | 17967118 | 17964734 | ID=MS.gene95330.t1;Parent=MS.gene95330 |
chr1.3 | exon | 17964734 | 17964795 | 17964734 | ID=MS.gene95330.t1.exon1;Parent=MS.gene95330.t1 |
chr1.3 | CDS | 17964734 | 17964795 | 17964734 | ID=cds.MS.gene95330.t1;Parent=MS.gene95330.t1 |
chr1.3 | exon | 17964877 | 17964991 | 17964877 | ID=MS.gene95330.t1.exon2;Parent=MS.gene95330.t1 |
chr1.3 | CDS | 17964877 | 17964991 | 17964877 | ID=cds.MS.gene95330.t1;Parent=MS.gene95330.t1 |
chr1.3 | exon | 17966436 | 17966591 | 17966436 | ID=MS.gene95330.t1.exon3;Parent=MS.gene95330.t1 |
chr1.3 | CDS | 17966436 | 17966591 | 17966436 | ID=cds.MS.gene95330.t1;Parent=MS.gene95330.t1 |
chr1.3 | exon | 17966948 | 17967118 | 17966948 | ID=MS.gene95330.t1.exon4;Parent=MS.gene95330.t1 |
chr1.3 | CDS | 17966948 | 17967118 | 17966948 | ID=cds.MS.gene95330.t1;Parent=MS.gene95330.t1 |
Gene Sequence |
Protein sequence |