Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95584.t1 | PNX89523.1 | 40.9 | 350 | 179 | 6 | 17 | 364 | 11 | 334 | 9.10E-11 | 78.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95584.t1 | A0A2K3MFE8 | 40.9 | 350 | 179 | 6 | 17 | 364 | 11 | 334 | 6.5e-11 | 78.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95584.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 123 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTGGAGGCGGATTT+TGG | 0.148513 | 4.3:-50080000 | None:intergenic |
| TTCCTCCGGCGGCATTTCTC+AGG | 0.275496 | 4.3:+50080489 | MS.gene95584:CDS |
| AGATTTGTTGCACGAGTGTT+TGG | 0.301888 | 4.3:+50080380 | MS.gene95584:CDS |
| CCTGATTGCTGCCGAGATAC+TGG | 0.331416 | 4.3:+50079754 | MS.gene95584:CDS |
| TTCGGGATGAGGAGGAGAAT+TGG | 0.336432 | 4.3:-50079936 | None:intergenic |
| ACTCGTGCAACAAATCTTCT+TGG | 0.342234 | 4.3:-50080374 | None:intergenic |
| GGTGGGAATGTGGCTAATAA+TGG | 0.350488 | 4.3:+50080184 | MS.gene95584:CDS |
| GTATAGGCTAAGGAGTTTGC+TGG | 0.351839 | 4.3:+50079595 | MS.gene95584:CDS |
| TTCAACTCCTGTGGCAGAAC+CGG | 0.369949 | 4.3:+50079889 | MS.gene95584:CDS |
| TCCCTAGCATACATAACATA+TGG | 0.379144 | 4.3:-50080590 | None:intergenic |
| TAAGACGCACTTACCTTGTC+TGG | 0.382245 | 4.3:-50078769 | None:intergenic |
| GACACAAGAGGTTCGAGGTT+TGG | 0.386987 | 4.3:+50079536 | MS.gene95584:CDS |
| TGGCAGTTGGGAAAAGTGTT+AGG | 0.395161 | 4.3:+50080546 | MS.gene95584:CDS |
| GGCATTGTGTGGTTGTTGAT+TGG | 0.403874 | 4.3:-50079969 | None:intergenic |
| TGATTGGCATCATGAACTTC+GGG | 0.411728 | 4.3:-50079953 | None:intergenic |
| TCATGGTCGCGCTTACATTC+AGG | 0.413604 | 4.3:+50078725 | None:intergenic |
| CGGAGAACCGGCTGGCAGTT+GGG | 0.421662 | 4.3:+50080534 | MS.gene95584:CDS |
| ACTCCTTAGCCTATACAAAA+AGG | 0.422371 | 4.3:-50079588 | None:intergenic |
| TGATGCTGCTGCTGTTGCCA+TGG | 0.428743 | 4.3:+50080135 | MS.gene95584:CDS |
| TCCTCCGGCGGCATTTCTCA+GGG | 0.436877 | 4.3:+50080490 | MS.gene95584:CDS |
| CGGACAGGGGCTGTTCTACA+TGG | 0.447788 | 4.3:+50079664 | MS.gene95584:CDS |
| TCGGGATGAGGAGGAGAATT+GGG | 0.451241 | 4.3:-50079935 | None:intergenic |
| GACGATGATTCCATCGATCT+TGG | 0.451452 | 4.3:+50079833 | MS.gene95584:CDS |
| GATTTGTTGCACGAGTGTTT+GGG | 0.452697 | 4.3:+50080381 | MS.gene95584:CDS |
| AGAGATTTGTTACGGAGAAC+CGG | 0.452877 | 4.3:+50080522 | MS.gene95584:CDS |
| GTGGGAATGTGGCTAATAAT+GGG | 0.456886 | 4.3:+50080185 | MS.gene95584:CDS |
| CCAGTATCTCGGCAGCAATC+AGG | 0.457630 | 4.3:-50079754 | None:intergenic |
| ATCGTCGTCGCTGTCTTCAT+CGG | 0.461921 | 4.3:-50079816 | None:intergenic |
| GAGCACTTCCACCAGCCGTT+AGG | 0.466631 | 4.3:+50079617 | MS.gene95584:CDS |
| CGAGATACTGGATCCCTTGG+AGG | 0.468114 | 4.3:+50079766 | MS.gene95584:CDS |
| ACATCAACATCCGCTGGATC+CGG | 0.472816 | 4.3:-50079908 | None:intergenic |
| TTGATTGGCATCATGAACTT+CGG | 0.473733 | 4.3:-50079954 | None:intergenic |
| ATGAACTACGACACAGAGTC+TGG | 0.481562 | 4.3:+50079507 | MS.gene95584:CDS |
| ACAGGAGTTGAAGGAGGTGC+AGG | 0.491094 | 4.3:-50079878 | None:intergenic |
| CATGGTGAAGACTAGCAATC+TGG | 0.491937 | 4.3:+50080243 | MS.gene95584:CDS |
| ACGGAGAACCGGCTGGCAGT+TGG | 0.492128 | 4.3:+50080533 | MS.gene95584:CDS |
| GCTGGATCCGGTTCTGCCAC+AGG | 0.493035 | 4.3:-50079896 | None:intergenic |
| GATGCTGCTGCTGTTGCCAT+GGG | 0.497052 | 4.3:+50080136 | MS.gene95584:CDS |
| GGACAGAGGCCATCTTCCTC+CGG | 0.503311 | 4.3:+50080475 | MS.gene95584:CDS |
| CGGCGGCATTTCTCAGGGGC+GGG | 0.503464 | 4.3:+50080495 | MS.gene95584:CDS |
| TGGGCTTTGACTTTCCGTGC+AGG | 0.505024 | 4.3:+50080441 | MS.gene95584:CDS |
| CCCTAGCATACATAACATAT+GGG | 0.511261 | 4.3:-50080589 | None:intergenic |
| GCATCATGAACTTCGGGATG+AGG | 0.512150 | 4.3:-50079947 | None:intergenic |
| GGTTCTGCCACAGGAGTTGA+AGG | 0.512252 | 4.3:-50079887 | None:intergenic |
| GCAAAATCAAAGAAATTATG+TGG | 0.521917 | 4.3:-50080013 | None:intergenic |
| TGCCGAGATACTGGATCCCT+TGG | 0.522650 | 4.3:+50079763 | MS.gene95584:CDS |
| TCATACTTCAACAACCACTT+TGG | 0.527976 | 4.3:+50079482 | MS.gene95584:CDS |
| ACCCATATGTTATGTATGCT+AGG | 0.529159 | 4.3:+50080588 | MS.gene95584:CDS |
| CGGCATTTCTCAGGGGCGGG+TGG | 0.532162 | 4.3:+50080498 | MS.gene95584:CDS |
| GTATGCTAGGGAAGCTCGGA+TGG | 0.537149 | 4.3:+50080601 | MS.gene95584:CDS |
| AAGTGGTTGTTGAAGTATGA+TGG | 0.538484 | 4.3:-50079479 | None:intergenic |
| AACATCAATGCCAAGATCGA+TGG | 0.539611 | 4.3:-50079843 | None:intergenic |
| GCGTCTAAGTTACAACGGAC+AGG | 0.542298 | 4.3:+50079649 | MS.gene95584:CDS |
| CATCCTACTTACAGATGCCA+TGG | 0.546268 | 4.3:+50080421 | MS.gene95584:CDS |
| ATTTGTTACGGAGAACCGGC+TGG | 0.553165 | 4.3:+50080526 | MS.gene95584:CDS |
| CCGGCGGCATTTCTCAGGGG+CGG | 0.554229 | 4.3:+50080494 | MS.gene95584:CDS |
| TCAAAGAAATTATGTGGAGG+CGG | 0.554584 | 4.3:-50080007 | None:intergenic |
| ATCTTCATCGTTGATATCCA+TGG | 0.554841 | 4.3:-50080041 | None:intergenic |
| CCCATATGTTATGTATGCTA+GGG | 0.556719 | 4.3:+50080589 | MS.gene95584:CDS |
| ACTCGACATGACCGAGCTAA+CGG | 0.557804 | 4.3:+50079697 | MS.gene95584:CDS |
| CTCCAAGGGATCCAGTATCT+CGG | 0.558445 | 4.3:-50079765 | None:intergenic |
| TAGAAGACACAAGAGGTTCG+AGG | 0.561323 | 4.3:+50079531 | MS.gene95584:CDS |
| TGTGGCTAATAATGGGAGAG+TGG | 0.562385 | 4.3:+50080192 | MS.gene95584:CDS |
| TCATAGGAAGTGATGGGACG+CGG | 0.562900 | 4.3:+50079564 | MS.gene95584:CDS |
| TCCTTCCACTTGATCCTGCA+CGG | 0.565208 | 4.3:-50080455 | None:intergenic |
| TGCACCTCCTTCAACTCCTG+TGG | 0.569911 | 4.3:+50079880 | MS.gene95584:CDS |
| GGTGCAACATCAACATCCGC+TGG | 0.570592 | 4.3:-50079914 | None:intergenic |
| GTATAATTCATACTCCTCCA+AGG | 0.570762 | 4.3:-50079780 | None:intergenic |
| TTATGTATGCTAGGGAAGCT+CGG | 0.572454 | 4.3:+50080597 | MS.gene95584:CDS |
| GGCATCTGTAAGTAGGATGG+TGG | 0.575659 | 4.3:-50080417 | None:intergenic |
| CGTCTAAGTTACAACGGACA+GGG | 0.576116 | 4.3:+50079650 | MS.gene95584:CDS |
| GGTGAAAACATGGGTGCAGG+TGG | 0.578164 | 4.3:+50080166 | MS.gene95584:CDS |
| ACTTTCCGTGCAGGATCAAG+TGG | 0.580280 | 4.3:+50080450 | MS.gene95584:CDS |
| GAAATGCCGCCGGAGGAAGA+TGG | 0.581201 | 4.3:-50080484 | None:intergenic |
| CATGGGTGCAGGTGGGAATG+TGG | 0.582106 | 4.3:+50080174 | MS.gene95584:CDS |
| CCTCTCACGAACCGTTAGCT+CGG | 0.586517 | 4.3:-50079708 | None:intergenic |
| CGGGTGGAAGAGATTTGTTA+CGG | 0.590170 | 4.3:+50080514 | MS.gene95584:CDS |
| CCGAGCTAACGGTTCGTGAG+AGG | 0.592918 | 4.3:+50079708 | MS.gene95584:CDS |
| GGAGTTGAAGGAGGTGCAGG+AGG | 0.594963 | 4.3:-50079875 | None:intergenic |
| GGGTAACAATGGTGAAAACA+TGG | 0.597431 | 4.3:+50080156 | MS.gene95584:CDS |
| TGTGGCAGAACCGGATCCAG+CGG | 0.598738 | 4.3:+50079898 | MS.gene95584:CDS |
| TCATGAACTTCGGGATGAGG+AGG | 0.603718 | 4.3:-50079944 | None:intergenic |
| CCCCTGAGAAATGCCGCCGG+AGG | 0.604022 | 4.3:-50080491 | None:intergenic |
| CATGGCATCTGTAAGTAGGA+TGG | 0.604155 | 4.3:-50080420 | None:intergenic |
| GTGCAACAAATCTTCTTGGT+AGG | 0.604465 | 4.3:-50080370 | None:intergenic |
| GCAGTATGAGACCTAACGGC+TGG | 0.608111 | 4.3:-50079628 | None:intergenic |
| AGCCCATGGCATCTGTAAGT+AGG | 0.608677 | 4.3:-50080424 | None:intergenic |
| GCTGGTAACAACAATGGTGA+TGG | 0.608883 | 4.3:+50080085 | MS.gene95584:CDS |
| CACAACAATCGATCCAGACA+AGG | 0.610416 | 4.3:+50078756 | MS.gene95584:CDS |
| ATCTCGGCAGCAATCAGGAA+AGG | 0.610893 | 4.3:-50079749 | None:intergenic |
| ATCCTACTTACAGATGCCAT+GGG | 0.611432 | 4.3:+50080422 | MS.gene95584:CDS |
| TGTCAGACTTGCAGAATACA+TGG | 0.612787 | 4.3:+50080225 | MS.gene95584:CDS |
| CAGAGGCCATCTTCCTCCGG+CGG | 0.613392 | 4.3:+50080478 | MS.gene95584:CDS |
| GGATATCAACGATGAAGATG+TGG | 0.616665 | 4.3:+50080045 | MS.gene95584:CDS |
| TATAATTCATACTCCTCCAA+GGG | 0.616989 | 4.3:-50079779 | None:intergenic |
| GTATGAGACCTAACGGCTGG+TGG | 0.617542 | 4.3:-50079625 | None:intergenic |
| AATGGTGAAAACATGGGTGC+AGG | 0.619307 | 4.3:+50080163 | MS.gene95584:CDS |
| CCTCCGGCGGCATTTCTCAG+GGG | 0.623483 | 4.3:+50080491 | MS.gene95584:CDS |
| CCGCCCCTGAGAAATGCCGC+CGG | 0.627703 | 4.3:-50080494 | None:intergenic |
| GCATCTGTAAGTAGGATGGT+GGG | 0.632206 | 4.3:-50080416 | None:intergenic |
| GCACGGAAAGTCAAAGCCCA+TGG | 0.634938 | 4.3:-50080438 | None:intergenic |
| TCCGTGCAGGATCAAGTGGA+AGG | 0.637315 | 4.3:+50080454 | MS.gene95584:CDS |
| TGGGCATCATCGGCATTGTG+TGG | 0.641687 | 4.3:-50079980 | None:intergenic |
| GTCGTAGTTCATCACCAAAG+TGG | 0.648562 | 4.3:-50079496 | None:intergenic |
| AGACGCAGTATGAGACCTAA+CGG | 0.653534 | 4.3:-50079632 | None:intergenic |
| TCGGCAGCAATCAGGAAAGG+AGG | 0.654636 | 4.3:-50079746 | None:intergenic |
| GCTGTTGCCATGGGTAACAA+TGG | 0.655928 | 4.3:+50080145 | MS.gene95584:CDS |
| GCAGCATCAAAGAAGTTATG+CGG | 0.656305 | 4.3:-50080121 | None:intergenic |
| GAAGGTATAGACAATGCTGC+TGG | 0.657055 | 4.3:+50080067 | MS.gene95584:CDS |
| GGACAGGGGCTGTTCTACAT+GGG | 0.657468 | 4.3:+50079665 | MS.gene95584:CDS |
| GTGAAAACATGGGTGCAGGT+GGG | 0.671071 | 4.3:+50080167 | MS.gene95584:CDS |
| GCTGTCTTCATCGGATGACG+AGG | 0.673509 | 4.3:-50079807 | None:intergenic |
| GCATCAAAGAAGTTATGCGG+AGG | 0.686757 | 4.3:-50080118 | None:intergenic |
| AGGATCAAGTGGAAGGACAG+AGG | 0.686964 | 4.3:+50080461 | MS.gene95584:CDS |
| GTCTGGTTAGAAGACACAAG+AGG | 0.687596 | 4.3:+50079524 | MS.gene95584:CDS |
| ATCAACGATGAAGATGTGGA+AGG | 0.687890 | 4.3:+50080049 | MS.gene95584:CDS |
| ATACTGCGTCTAAGTTACAA+CGG | 0.691908 | 4.3:+50079644 | MS.gene95584:CDS |
| AAATCAAAGAAATTATGTGG+AGG | 0.696121 | 4.3:-50080010 | None:intergenic |
| TCTGCCACAGGAGTTGAAGG+AGG | 0.696157 | 4.3:-50079884 | None:intergenic |
| TCTGTAAGTAGGATGGTGGG+CGG | 0.704271 | 4.3:-50080413 | None:intergenic |
| GTCTAAGTTACAACGGACAG+GGG | 0.730281 | 4.3:+50079651 | MS.gene95584:CDS |
| GGTAACAATGGTGAAAACAT+GGG | 0.742892 | 4.3:+50080157 | MS.gene95584:CDS |
| AATGCTGCTGGTAACAACAA+TGG | 0.748660 | 4.3:+50080079 | MS.gene95584:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAAAAAGAACAC+AGG | + | chr4.3:50079362-50079381 | MS.gene95584:intron | 15.0% |
| !!! | AAATGATAACAATTTAAAAC+AGG | - | chr4.3:50080340-50080359 | None:intergenic | 15.0% |
| ! | AAATCAAAGAAATTATGTGG+AGG | - | chr4.3:50080013-50080032 | None:intergenic | 25.0% |
| ! | AGTACACAAAATCTTAGATA+CGG | - | chr4.3:50079022-50079041 | None:intergenic | 25.0% |
| ! | GCAAAATCAAAGAAATTATG+TGG | - | chr4.3:50080016-50080035 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTTACATGTTTA+AGG | + | chr4.3:50078909-50078928 | MS.gene95584:intron | 25.0% |
| AAATATATTGCAGAGTGACA+AGG | - | chr4.3:50079105-50079124 | None:intergenic | 30.0% | |
| AGTACACATTATCGTAGATA+CGG | - | chr4.3:50079209-50079228 | None:intergenic | 30.0% | |
| TATAATTCATACTCCTCCAA+GGG | - | chr4.3:50079782-50079801 | None:intergenic | 30.0% | |
| TTGTTACTAAACTTTGAGTG+TGG | + | chr4.3:50078806-50078825 | MS.gene95584:intron | 30.0% | |
| AAAATCTACCGGATACGAAA+AGG | - | chr4.3:50078880-50078899 | None:intergenic | 35.0% | |
| AAATCTACCGGATACGAAAA+GGG | - | chr4.3:50078879-50078898 | None:intergenic | 35.0% | |
| AAGTGGTTGTTGAAGTATGA+TGG | - | chr4.3:50079482-50079501 | None:intergenic | 35.0% | |
| ACCCATATGTTATGTATGCT+AGG | + | chr4.3:50080588-50080607 | MS.gene95584:CDS | 35.0% | |
| ACTCCTTAGCCTATACAAAA+AGG | - | chr4.3:50079591-50079610 | None:intergenic | 35.0% | |
| ATACTGCGTCTAAGTTACAA+CGG | + | chr4.3:50079644-50079663 | MS.gene95584:CDS | 35.0% | |
| ATCTTCATCGTTGATATCCA+TGG | - | chr4.3:50080044-50080063 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+AGG | - | chr4.3:50079066-50079085 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+TGG | - | chr4.3:50079066-50079085 | None:intergenic | 35.0% | |
| CCCATATGTTATGTATGCTA+GGG | + | chr4.3:50080589-50080608 | MS.gene95584:CDS | 35.0% | |
| CCCTAGCATACATAACATAT+GGG | - | chr4.3:50080592-50080611 | None:intergenic | 35.0% | |
| GGTAACAATGGTGAAAACAT+GGG | + | chr4.3:50080157-50080176 | MS.gene95584:CDS | 35.0% | |
| GTATAATTCATACTCCTCCA+AGG | - | chr4.3:50079783-50079802 | None:intergenic | 35.0% | |
| TCAAAGAAATTATGTGGAGG+CGG | - | chr4.3:50080010-50080029 | None:intergenic | 35.0% | |
| TCATACTTCAACAACCACTT+TGG | + | chr4.3:50079482-50079501 | MS.gene95584:CDS | 35.0% | |
| TCCCTAGCATACATAACATA+TGG | - | chr4.3:50080593-50080612 | None:intergenic | 35.0% | |
| TTACAGAGTGACAACAAACT+GGG | - | chr4.3:50079252-50079271 | None:intergenic | 35.0% | |
| TTCTTGTGTGTGCATAATAG+TGG | - | chr4.3:50078998-50079017 | None:intergenic | 35.0% | |
| TTGATTGGCATCATGAACTT+CGG | - | chr4.3:50079957-50079976 | None:intergenic | 35.0% | |
| TTTACAGAGTGACATCAAAC+TGG | - | chr4.3:50079291-50079310 | None:intergenic | 35.0% | |
| ! | GAAGTTGTCACTTGTAATGT+AGG | + | chr4.3:50079442-50079461 | MS.gene95584:intron | 35.0% |
| ! | GTGTTTTCATAGGAAGTGAT+GGG | + | chr4.3:50079558-50079577 | MS.gene95584:CDS | 35.0% |
| AACATCAATGCCAAGATCGA+TGG | - | chr4.3:50079846-50079865 | None:intergenic | 40.0% | |
| AACCAACAAGAAGGCAAACA+TGG | - | chr4.3:50078942-50078961 | None:intergenic | 40.0% | |
| AATGCTGCTGGTAACAACAA+TGG | + | chr4.3:50080079-50080098 | MS.gene95584:CDS | 40.0% | |
| ACTCGTGCAACAAATCTTCT+TGG | - | chr4.3:50080377-50080396 | None:intergenic | 40.0% | |
| ATCAACGATGAAGATGTGGA+AGG | + | chr4.3:50080049-50080068 | MS.gene95584:CDS | 40.0% | |
| ATCCTACTTACAGATGCCAT+GGG | + | chr4.3:50080422-50080441 | MS.gene95584:CDS | 40.0% | |
| ATGTTTGCCTTCTTGTTGGT+TGG | + | chr4.3:50078941-50078960 | MS.gene95584:intron | 40.0% | |
| GACTATGTTTGCCTTCTTGT+TGG | + | chr4.3:50078937-50078956 | MS.gene95584:intron | 40.0% | |
| GCAGCATCAAAGAAGTTATG+CGG | - | chr4.3:50080124-50080143 | None:intergenic | 40.0% | |
| GGATATCAACGATGAAGATG+TGG | + | chr4.3:50080045-50080064 | MS.gene95584:CDS | 40.0% | |
| GGGTAACAATGGTGAAAACA+TGG | + | chr4.3:50080156-50080175 | MS.gene95584:CDS | 40.0% | |
| GTCACTTGTAATGTAGGATG+AGG | + | chr4.3:50079448-50079467 | MS.gene95584:intron | 40.0% | |
| GTGCAACAAATCTTCTTGGT+AGG | - | chr4.3:50080373-50080392 | None:intergenic | 40.0% | |
| GTGGGAATGTGGCTAATAAT+GGG | + | chr4.3:50080185-50080204 | MS.gene95584:CDS | 40.0% | |
| TCATCATCCAACCAACAAGA+AGG | - | chr4.3:50078951-50078970 | None:intergenic | 40.0% | |
| TGAAGCCATGCAAAATCTAC+CGG | - | chr4.3:50078891-50078910 | None:intergenic | 40.0% | |
| TGATTGGCATCATGAACTTC+GGG | - | chr4.3:50079956-50079975 | None:intergenic | 40.0% | |
| TGTCAGACTTGCAGAATACA+TGG | + | chr4.3:50080225-50080244 | MS.gene95584:CDS | 40.0% | |
| TTATGTATGCTAGGGAAGCT+CGG | + | chr4.3:50080597-50080616 | MS.gene95584:CDS | 40.0% | |
| ! | GGACCTTTTTGTATAGGCTA+AGG | + | chr4.3:50079585-50079604 | MS.gene95584:CDS | 40.0% |
| ! | GGTGTTTTCATAGGAAGTGA+TGG | + | chr4.3:50079557-50079576 | MS.gene95584:CDS | 40.0% |
| ! | GTTTTCACCATTGTTACCCA+TGG | - | chr4.3:50080155-50080174 | None:intergenic | 40.0% |
| !! | AATTATGTGGAGGCGGATTT+TGG | - | chr4.3:50080003-50080022 | None:intergenic | 40.0% |
| !! | AGAGATTTGTTACGGAGAAC+CGG | + | chr4.3:50080522-50080541 | MS.gene95584:CDS | 40.0% |
| !! | AGATTTGTTGCACGAGTGTT+TGG | + | chr4.3:50080380-50080399 | MS.gene95584:CDS | 40.0% |
| !! | ATTATGTGGAGGCGGATTTT+GGG | - | chr4.3:50080002-50080021 | None:intergenic | 40.0% |
| !! | GATTTGTTGCACGAGTGTTT+GGG | + | chr4.3:50080381-50080400 | MS.gene95584:CDS | 40.0% |
| !!! | TCGAGGTTTGGTGTTTTCAT+AGG | + | chr4.3:50079548-50079567 | MS.gene95584:CDS | 40.0% |
| AATGGTGAAAACATGGGTGC+AGG | + | chr4.3:50080163-50080182 | MS.gene95584:CDS | 45.0% | |
| AGACGCAGTATGAGACCTAA+CGG | - | chr4.3:50079635-50079654 | None:intergenic | 45.0% | |
| ATGAACTACGACACAGAGTC+TGG | + | chr4.3:50079507-50079526 | MS.gene95584:CDS | 45.0% | |
| CACAACAATCGATCCAGACA+AGG | + | chr4.3:50078756-50078775 | MS.gene95584:CDS | 45.0% | |
| CATCCTACTTACAGATGCCA+TGG | + | chr4.3:50080421-50080440 | MS.gene95584:CDS | 45.0% | |
| CATGGCATCTGTAAGTAGGA+TGG | - | chr4.3:50080423-50080442 | None:intergenic | 45.0% | |
| CATGGTGAAGACTAGCAATC+TGG | + | chr4.3:50080243-50080262 | MS.gene95584:CDS | 45.0% | |
| CGTCTAAGTTACAACGGACA+GGG | + | chr4.3:50079650-50079669 | MS.gene95584:CDS | 45.0% | |
| GACCATGTTTGCCTTCTTGT+TGG | + | chr4.3:50079126-50079145 | MS.gene95584:intron | 45.0% | |
| GACGATGATTCCATCGATCT+TGG | + | chr4.3:50079833-50079852 | MS.gene95584:CDS | 45.0% | |
| GCATCAAAGAAGTTATGCGG+AGG | - | chr4.3:50080121-50080140 | None:intergenic | 45.0% | |
| GCATCTGTAAGTAGGATGGT+GGG | - | chr4.3:50080419-50080438 | None:intergenic | 45.0% | |
| GCTGGTAACAACAATGGTGA+TGG | + | chr4.3:50080085-50080104 | MS.gene95584:CDS | 45.0% | |
| GGCATTGTGTGGTTGTTGAT+TGG | - | chr4.3:50079972-50079991 | None:intergenic | 45.0% | |
| GGTGGGAATGTGGCTAATAA+TGG | + | chr4.3:50080184-50080203 | MS.gene95584:CDS | 45.0% | |
| GTATAGGCTAAGGAGTTTGC+TGG | + | chr4.3:50079595-50079614 | MS.gene95584:CDS | 45.0% | |
| GTCGTAGTTCATCACCAAAG+TGG | - | chr4.3:50079499-50079518 | None:intergenic | 45.0% | |
| GTCTAAGTTACAACGGACAG+GGG | + | chr4.3:50079651-50079670 | MS.gene95584:CDS | 45.0% | |
| GTCTGGTTAGAAGACACAAG+AGG | + | chr4.3:50079524-50079543 | MS.gene95584:CDS | 45.0% | |
| GTGAAGACTAGCAATCTGGT+AGG | + | chr4.3:50080247-50080266 | MS.gene95584:intron | 45.0% | |
| TAAGACGCACTTACCTTGTC+TGG | - | chr4.3:50078772-50078791 | None:intergenic | 45.0% | |
| TAGAAGACACAAGAGGTTCG+AGG | + | chr4.3:50079531-50079550 | MS.gene95584:CDS | 45.0% | |
| ! | CGTATCCGGTAGATTTTGCA+TGG | + | chr4.3:50078883-50078902 | MS.gene95584:intron | 45.0% |
| ! | GAAGGTATAGACAATGCTGC+TGG | + | chr4.3:50080067-50080086 | MS.gene95584:CDS | 45.0% |
| ! | TGTGGCTAATAATGGGAGAG+TGG | + | chr4.3:50080192-50080211 | MS.gene95584:CDS | 45.0% |
| !! | CGGGTGGAAGAGATTTGTTA+CGG | + | chr4.3:50080514-50080533 | MS.gene95584:CDS | 45.0% |
| !! | CTTTGATTTTGCTGCTGCCA+TGG | + | chr4.3:50080024-50080043 | MS.gene95584:CDS | 45.0% |
| !! | TGGCAGTTGGGAAAAGTGTT+AGG | + | chr4.3:50080546-50080565 | MS.gene95584:CDS | 45.0% |
| ACATCAACATCCGCTGGATC+CGG | - | chr4.3:50079911-50079930 | None:intergenic | 50.0% | |
| ACTCGACATGACCGAGCTAA+CGG | + | chr4.3:50079697-50079716 | MS.gene95584:CDS | 50.0% | |
| ACTTTCCGTGCAGGATCAAG+TGG | + | chr4.3:50080450-50080469 | MS.gene95584:CDS | 50.0% | |
| AGCCCATGGCATCTGTAAGT+AGG | - | chr4.3:50080427-50080446 | None:intergenic | 50.0% | |
| AGGATCAAGTGGAAGGACAG+AGG | + | chr4.3:50080461-50080480 | MS.gene95584:CDS | 50.0% | |
| ATCGTCGTCGCTGTCTTCAT+CGG | - | chr4.3:50079819-50079838 | None:intergenic | 50.0% | |
| ATCTCGGCAGCAATCAGGAA+AGG | - | chr4.3:50079752-50079771 | None:intergenic | 50.0% | |
| CTCCAAGGGATCCAGTATCT+CGG | - | chr4.3:50079768-50079787 | None:intergenic | 50.0% | |
| GACACAAGAGGTTCGAGGTT+TGG | + | chr4.3:50079536-50079555 | MS.gene95584:CDS | 50.0% | |
| GCATCATGAACTTCGGGATG+AGG | - | chr4.3:50079950-50079969 | None:intergenic | 50.0% | |
| GCGTCTAAGTTACAACGGAC+AGG | + | chr4.3:50079649-50079668 | MS.gene95584:CDS | 50.0% | |
| GCTGTTGCCATGGGTAACAA+TGG | + | chr4.3:50080145-50080164 | MS.gene95584:CDS | 50.0% | |
| GGCATCTGTAAGTAGGATGG+TGG | - | chr4.3:50080420-50080439 | None:intergenic | 50.0% | |
| GTGAAAACATGGGTGCAGGT+GGG | + | chr4.3:50080167-50080186 | MS.gene95584:CDS | 50.0% | |
| TCATGAACTTCGGGATGAGG+AGG | - | chr4.3:50079947-50079966 | None:intergenic | 50.0% | |
| TCCTTCCACTTGATCCTGCA+CGG | - | chr4.3:50080458-50080477 | None:intergenic | 50.0% | |
| TCGGGATGAGGAGGAGAATT+GGG | - | chr4.3:50079938-50079957 | None:intergenic | 50.0% | |
| TTCAACTCCTGTGGCAGAAC+CGG | + | chr4.3:50079889-50079908 | MS.gene95584:CDS | 50.0% | |
| TTCGGGATGAGGAGGAGAAT+TGG | - | chr4.3:50079939-50079958 | None:intergenic | 50.0% | |
| ! | ATTTGTTACGGAGAACCGGC+TGG | + | chr4.3:50080526-50080545 | MS.gene95584:CDS | 50.0% |
| ! | CCTGTCTCCCTTTTCGTATC+CGG | + | chr4.3:50078869-50078888 | MS.gene95584:intron | 50.0% |
| ! | GGACGCGGACCTTTTTGTAT+AGG | + | chr4.3:50079579-50079598 | MS.gene95584:CDS | 50.0% |
| ! | TCATAGGAAGTGATGGGACG+CGG | + | chr4.3:50079564-50079583 | MS.gene95584:CDS | 50.0% |
| !! | AGGCGGATTTTGGGCATCAT+CGG | - | chr4.3:50079993-50080012 | None:intergenic | 50.0% |
| !! | TCTGTAAGTAGGATGGTGGG+CGG | - | chr4.3:50080416-50080435 | None:intergenic | 50.0% |
| CCAGTATCTCGGCAGCAATC+AGG | - | chr4.3:50079757-50079776 | None:intergenic | 55.0% | |
| CCGGATACGAAAAGGGAGAC+AGG | - | chr4.3:50078872-50078891 | None:intergenic | 55.0% | |
| CCTCTCACGAACCGTTAGCT+CGG | - | chr4.3:50079711-50079730 | None:intergenic | 55.0% | |
| CCTGATTGCTGCCGAGATAC+TGG | + | chr4.3:50079754-50079773 | MS.gene95584:CDS | 55.0% | |
| CGAGATACTGGATCCCTTGG+AGG | + | chr4.3:50079766-50079785 | MS.gene95584:CDS | 55.0% | |
| GATGCTGCTGCTGTTGCCAT+GGG | + | chr4.3:50080136-50080155 | MS.gene95584:CDS | 55.0% | |
| GCACGGAAAGTCAAAGCCCA+TGG | - | chr4.3:50080441-50080460 | None:intergenic | 55.0% | |
| GCAGTATGAGACCTAACGGC+TGG | - | chr4.3:50079631-50079650 | None:intergenic | 55.0% | |
| GCTGTCTTCATCGGATGACG+AGG | - | chr4.3:50079810-50079829 | None:intergenic | 55.0% | |
| GGACAGGGGCTGTTCTACAT+GGG | + | chr4.3:50079665-50079684 | MS.gene95584:CDS | 55.0% | |
| GGTGAAAACATGGGTGCAGG+TGG | + | chr4.3:50080166-50080185 | MS.gene95584:CDS | 55.0% | |
| GGTGCAACATCAACATCCGC+TGG | - | chr4.3:50079917-50079936 | None:intergenic | 55.0% | |
| GGTTCTGCCACAGGAGTTGA+AGG | - | chr4.3:50079890-50079909 | None:intergenic | 55.0% | |
| GTATGAGACCTAACGGCTGG+TGG | - | chr4.3:50079628-50079647 | None:intergenic | 55.0% | |
| GTATGCTAGGGAAGCTCGGA+TGG | + | chr4.3:50080601-50080620 | MS.gene95584:CDS | 55.0% | |
| TCCGTGCAGGATCAAGTGGA+AGG | + | chr4.3:50080454-50080473 | MS.gene95584:CDS | 55.0% | |
| TCGGCAGCAATCAGGAAAGG+AGG | - | chr4.3:50079749-50079768 | None:intergenic | 55.0% | |
| TCTGCCACAGGAGTTGAAGG+AGG | - | chr4.3:50079887-50079906 | None:intergenic | 55.0% | |
| TGATGCTGCTGCTGTTGCCA+TGG | + | chr4.3:50080135-50080154 | MS.gene95584:CDS | 55.0% | |
| TGCACCTCCTTCAACTCCTG+TGG | + | chr4.3:50079880-50079899 | MS.gene95584:CDS | 55.0% | |
| TGCCGAGATACTGGATCCCT+TGG | + | chr4.3:50079763-50079782 | MS.gene95584:CDS | 55.0% | |
| TGGGCATCATCGGCATTGTG+TGG | - | chr4.3:50079983-50080002 | None:intergenic | 55.0% | |
| ! | ACAGGAGTTGAAGGAGGTGC+AGG | - | chr4.3:50079881-50079900 | None:intergenic | 55.0% |
| ! | CACTTTTCCCAACTGCCAGC+CGG | - | chr4.3:50080544-50080563 | None:intergenic | 55.0% |
| ! | TGGGCTTTGACTTTCCGTGC+AGG | + | chr4.3:50080441-50080460 | MS.gene95584:CDS | 55.0% |
| CATGGGTGCAGGTGGGAATG+TGG | + | chr4.3:50080174-50080193 | MS.gene95584:CDS | 60.0% | |
| CCGAGCTAACGGTTCGTGAG+AGG | + | chr4.3:50079708-50079727 | MS.gene95584:CDS | 60.0% | |
| CGGACAGGGGCTGTTCTACA+TGG | + | chr4.3:50079664-50079683 | MS.gene95584:CDS | 60.0% | |
| GAAATGCCGCCGGAGGAAGA+TGG | - | chr4.3:50080487-50080506 | None:intergenic | 60.0% | |
| GAGCACTTCCACCAGCCGTT+AGG | + | chr4.3:50079617-50079636 | MS.gene95584:CDS | 60.0% | |
| GGACAGAGGCCATCTTCCTC+CGG | + | chr4.3:50080475-50080494 | MS.gene95584:CDS | 60.0% | |
| TCCTCCGGCGGCATTTCTCA+GGG | + | chr4.3:50080490-50080509 | MS.gene95584:CDS | 60.0% | |
| TGTGGCAGAACCGGATCCAG+CGG | + | chr4.3:50079898-50079917 | MS.gene95584:CDS | 60.0% | |
| TTCCTCCGGCGGCATTTCTC+AGG | + | chr4.3:50080489-50080508 | MS.gene95584:CDS | 60.0% | |
| ! | GGAGTTGAAGGAGGTGCAGG+AGG | - | chr4.3:50079878-50079897 | None:intergenic | 60.0% |
| ACGGAGAACCGGCTGGCAGT+TGG | + | chr4.3:50080533-50080552 | MS.gene95584:CDS | 65.0% | |
| CAGAGGCCATCTTCCTCCGG+CGG | + | chr4.3:50080478-50080497 | MS.gene95584:CDS | 65.0% | |
| CCTCCGGCGGCATTTCTCAG+GGG | + | chr4.3:50080491-50080510 | MS.gene95584:CDS | 65.0% | |
| CGGAGAACCGGCTGGCAGTT+GGG | + | chr4.3:50080534-50080553 | MS.gene95584:CDS | 65.0% | |
| GCTGGATCCGGTTCTGCCAC+AGG | - | chr4.3:50079899-50079918 | None:intergenic | 65.0% | |
| CCCCTGAGAAATGCCGCCGG+AGG | - | chr4.3:50080494-50080513 | None:intergenic | 70.0% | |
| CCGCCCCTGAGAAATGCCGC+CGG | - | chr4.3:50080497-50080516 | None:intergenic | 70.0% | |
| CCGGCGGCATTTCTCAGGGG+CGG | + | chr4.3:50080494-50080513 | MS.gene95584:CDS | 70.0% | |
| CGGCATTTCTCAGGGGCGGG+TGG | + | chr4.3:50080498-50080517 | MS.gene95584:CDS | 70.0% | |
| CGGCGGCATTTCTCAGGGGC+GGG | + | chr4.3:50080495-50080514 | MS.gene95584:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 50078727 | 50080631 | 50078727 | ID=MS.gene95584 |
| chr4.3 | mRNA | 50078727 | 50080631 | 50078727 | ID=MS.gene95584.t1;Parent=MS.gene95584 |
| chr4.3 | exon | 50078727 | 50078777 | 50078727 | ID=MS.gene95584.t1.exon1;Parent=MS.gene95584.t1 |
| chr4.3 | CDS | 50078727 | 50078777 | 50078727 | ID=cds.MS.gene95584.t1;Parent=MS.gene95584.t1 |
| chr4.3 | exon | 50079464 | 50080264 | 50079464 | ID=MS.gene95584.t1.exon2;Parent=MS.gene95584.t1 |
| chr4.3 | CDS | 50079464 | 50080264 | 50079464 | ID=cds.MS.gene95584.t1;Parent=MS.gene95584.t1 |
| chr4.3 | exon | 50080368 | 50080631 | 50080368 | ID=MS.gene95584.t1.exon3;Parent=MS.gene95584.t1 |
| chr4.3 | CDS | 50080368 | 50080631 | 50080368 | ID=cds.MS.gene95584.t1;Parent=MS.gene95584.t1 |
| Gene Sequence |
| Protein sequence |
