Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95658.t1 | XP_003623338.1 | 90.9 | 591 | 47 | 4 | 1 | 590 | 1 | 585 | 1.20E-278 | 968.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95658.t1 | Q5NE24 | 26.0 | 311 | 203 | 10 | 287 | 588 | 207 | 499 | 2.8e-15 | 85.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95658.t1 | G7KSD5 | 90.9 | 591 | 47 | 4 | 1 | 590 | 1 | 585 | 8.4e-279 | 968.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95658.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95658.t1 | MTR_7g069740 | 90.355 | 591 | 50 | 4 | 1 | 590 | 1 | 585 | 0.0 | 1085 |
| MS.gene95658.t1 | MTR_3g072710 | 26.688 | 311 | 201 | 11 | 287 | 588 | 207 | 499 | 2.14e-17 | 85.9 |
| MS.gene95658.t1 | MTR_7g027190 | 25.799 | 438 | 234 | 22 | 203 | 589 | 276 | 673 | 1.18e-14 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95658.t1 | AT1G07520 | 24.000 | 400 | 254 | 17 | 219 | 588 | 313 | 692 | 1.72e-11 | 67.8 |
| MS.gene95658.t1 | AT1G07520 | 24.000 | 400 | 254 | 17 | 219 | 588 | 314 | 693 | 1.78e-11 | 67.8 |
Find 100 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATAATTGATTATTGTTT+TGG | 0.189427 | 7.4:-34007613 | MS.gene95658:CDS |
| TGAAATTGACATCAATTAAA+TGG | 0.189748 | 7.4:-34007534 | MS.gene95658:CDS |
| ACCAATTTGTGGACTCAAAA+TGG | 0.208342 | 7.4:+34008206 | None:intergenic |
| TTTCTTCATCAATTGGAAAT+TGG | 0.210829 | 7.4:+34008271 | None:intergenic |
| AACTCCCTTCACTTTCTTCT+TGG | 0.260798 | 7.4:+34008163 | None:intergenic |
| CAATTTCAAACCACATGATT+TGG | 0.267276 | 7.4:+34007447 | None:intergenic |
| TACTTTGCCACAAGAAAATA+TGG | 0.275648 | 7.4:-34007962 | MS.gene95658:CDS |
| AGCAAGGGAATTATTACTTT+TGG | 0.295898 | 7.4:-34007235 | MS.gene95658:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7.4:-34007051 | MS.gene95658:CDS |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7.4:+34008293 | None:intergenic |
| TCCAAGGTTTCTTCATCAAT+TGG | 0.335882 | 7.4:+34008264 | None:intergenic |
| GATGACCGGTCTTCCTCATA+TGG | 0.343694 | 7.4:-34007332 | MS.gene95658:CDS |
| TCTATGTGTTCATAGATTAA+AGG | 0.348224 | 7.4:+34008546 | None:intergenic |
| ATACTCATAAAGTTCCCTTT+TGG | 0.349243 | 7.4:+34007471 | None:intergenic |
| CTTGGAACTTCCATCTCTAA+TGG | 0.352756 | 7.4:-34008247 | MS.gene95658:CDS |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.385451 | 7.4:+34007752 | None:intergenic |
| CCTCGGAGACAGTTGTAAAA+TGG | 0.387068 | 7.4:-34008091 | MS.gene95658:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7.4:-34007926 | MS.gene95658:CDS |
| ATGAAAATTCTGCATCTGTT+TGG | 0.402276 | 7.4:-34007507 | MS.gene95658:CDS |
| GAAGGTAGAGGAAAAGGAAT+TGG | 0.405087 | 7.4:-34007425 | MS.gene95658:CDS |
| GAAATTGAAGGTAGAGGAAA+AGG | 0.406350 | 7.4:-34007431 | MS.gene95658:CDS |
| TCTTGAATATTACCAATTTG+TGG | 0.407532 | 7.4:+34008195 | None:intergenic |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7.4:-34007039 | MS.gene95658:CDS |
| AAAGGTGAGATTAGCTTAGA+AGG | 0.414505 | 7.4:-34006986 | MS.gene95658:CDS |
| GAACATAGTCATCATCAATA+TGG | 0.421357 | 7.4:+34008409 | None:intergenic |
| TGAGACACTTGCATATTACT+TGG | 0.425483 | 7.4:-34007803 | MS.gene95658:CDS |
| TCATATCATGCTAGAATTGA+AGG | 0.431395 | 7.4:-34006902 | MS.gene95658:CDS |
| TTTATCAAGGGAATTTGGTT+GGG | 0.433000 | 7.4:-34007705 | MS.gene95658:CDS |
| GGTGCATTACAAGGCTTTGT+TGG | 0.436581 | 7.4:-34007146 | MS.gene95658:CDS |
| TCCAATTGATGAAGAAACCT+TGG | 0.445970 | 7.4:-34008265 | MS.gene95658:CDS |
| GAAACAGTCTCCAATAGAAA+AGG | 0.449571 | 7.4:+34007574 | None:intergenic |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7.4:+34008284 | None:intergenic |
| AGTGATGGCTATCATCATAA+AGG | 0.457503 | 7.4:-34007004 | MS.gene95658:CDS |
| GATCAAAATAATGAACGAAA+AGG | 0.458900 | 7.4:-34007386 | MS.gene95658:CDS |
| GAGGATTTGATCAAGAACTA+TGG | 0.460555 | 7.4:-34007259 | MS.gene95658:CDS |
| TTGGCTTTCAATTTGATGAC+CGG | 0.461685 | 7.4:-34007346 | MS.gene95658:CDS |
| TGCATCTGTTTGGAATTTCG+AGG | 0.475745 | 7.4:-34007497 | MS.gene95658:CDS |
| TGCATGTGAAATATTGTTTG+TGG | 0.478742 | 7.4:-34007077 | MS.gene95658:CDS |
| AGGGAATTTGGTGCATTACA+AGG | 0.487309 | 7.4:-34007155 | MS.gene95658:CDS |
| CTTCTAACCATTCCCATATG+AGG | 0.492028 | 7.4:+34007319 | None:intergenic |
| ATGACCGGTCTTCCTCATAT+GGG | 0.495090 | 7.4:-34007331 | MS.gene95658:CDS |
| ATCAAAATAATGAACGAAAA+GGG | 0.498103 | 7.4:-34007385 | MS.gene95658:CDS |
| TCTGATTTCATGGAAAGTGT+TGG | 0.499305 | 7.4:+34008009 | None:intergenic |
| GAGAGTACTGTTCTCTGAAG+TGG | 0.503362 | 7.4:+34008326 | None:intergenic |
| GGAATTTCGAGGATACCAAA+AGG | 0.507394 | 7.4:-34007486 | MS.gene95658:CDS |
| TCATCCATGATGATGCCATA+TGG | 0.508726 | 7.4:+34008432 | None:intergenic |
| TCATCCATGATGATGCCATA+TGG | 0.509020 | 7.4:+34008387 | None:intergenic |
| CATTAGAGATGGAAGTTCCA+AGG | 0.509956 | 7.4:+34008248 | None:intergenic |
| AAATGAGAATCAACTTGTGT+TGG | 0.511243 | 7.4:-34006876 | MS.gene95658:CDS |
| ATCATGTGGTTTGAAATTGA+AGG | 0.512511 | 7.4:-34007443 | MS.gene95658:CDS |
| CATCAAGTTGTTGAGCCGTA+TGG | 0.513713 | 7.4:-34008489 | MS.gene95658:CDS |
| GATGATGACTATGTTCCATA+TGG | 0.514828 | 7.4:-34008402 | MS.gene95658:CDS |
| GCTCAAGTAGTGACAAATCA+TGG | 0.515932 | 7.4:-34007781 | MS.gene95658:CDS |
| CATGGTGAAGCCTTGGAGAA+AGG | 0.516575 | 7.4:-34007898 | MS.gene95658:CDS |
| AAAATTCTCCCTGTGGTGCA+TGG | 0.518660 | 7.4:-34008035 | MS.gene95658:CDS |
| GTCTCAAGAGAGTCACCAAT+AGG | 0.521912 | 7.4:+34007820 | None:intergenic |
| GGAAGCACATGGTGAAGCCT+TGG | 0.523810 | 7.4:-34007905 | MS.gene95658:CDS |
| TGGTTTGAAATTGAAGGTAG+AGG | 0.525487 | 7.4:-34007437 | MS.gene95658:CDS |
| GATTCTAATTCCATTAGAGA+TGG | 0.530035 | 7.4:+34008237 | None:intergenic |
| GTTGATGACTATGATCCATA+TGG | 0.530988 | 7.4:-34008447 | MS.gene95658:CDS |
| GAATTTCGAGGATACCAAAA+GGG | 0.531446 | 7.4:-34007485 | MS.gene95658:CDS |
| GGTGAGATTAGCTTAGAAGG+TGG | 0.534203 | 7.4:-34006983 | MS.gene95658:CDS |
| AACAGATTCTTCACTCTCCA+TGG | 0.536819 | 7.4:-34008569 | MS.gene95658:CDS |
| TGTTGGACTCCATGCACCAC+AGG | 0.537815 | 7.4:+34008026 | None:intergenic |
| AGAATCAACTTGTGTTGGAA+TGG | 0.540696 | 7.4:-34006871 | MS.gene95658:CDS |
| GAAGTCAGAGAAATGTTGAA+AGG | 0.546931 | 7.4:-34006935 | MS.gene95658:CDS |
| CGGTCTTCCTCATATGGGAA+TGG | 0.548383 | 7.4:-34007326 | MS.gene95658:CDS |
| CCTTCACAAAATTCTCCCTG+TGG | 0.548533 | 7.4:-34008042 | MS.gene95658:CDS |
| ATCAAGAACTATGGTAGCAA+GGG | 0.551686 | 7.4:-34007250 | MS.gene95658:CDS |
| GATTTGAACTATACCCTTCG+AGG | 0.553155 | 7.4:+34008115 | None:intergenic |
| TGTTCATAGATTAAAGGCCA+TGG | 0.555928 | 7.4:+34008552 | None:intergenic |
| GAAATGATCATAAGTGGCAC+TGG | 0.557550 | 7.4:+34008065 | None:intergenic |
| TGAAGGGAAATGATCATAAG+TGG | 0.559314 | 7.4:+34008059 | None:intergenic |
| CAACTTGTGTTGGAATGGAA+AGG | 0.560463 | 7.4:-34006866 | MS.gene95658:CDS |
| TGATCCATATGGCATCATCA+TGG | 0.565829 | 7.4:-34008436 | MS.gene95658:CDS |
| TGTTCCATATGGCATCATCA+TGG | 0.566239 | 7.4:-34008391 | MS.gene95658:CDS |
| GATCAAGAACTATGGTAGCA+AGG | 0.567301 | 7.4:-34007251 | MS.gene95658:CDS |
| CTATACCCTTCGAGGTCATG+TGG | 0.569181 | 7.4:+34008123 | None:intergenic |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7.4:-34007038 | MS.gene95658:CDS |
| ATAGTTCTTGATCAAATCCT+CGG | 0.572634 | 7.4:+34007261 | None:intergenic |
| CATTCCCATATGAGGAAGAC+CGG | 0.576719 | 7.4:+34007327 | None:intergenic |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7.4:+34007929 | None:intergenic |
| TATGAGTATGCCAAATCATG+TGG | 0.582299 | 7.4:-34007457 | MS.gene95658:CDS |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7.4:+34007052 | None:intergenic |
| TCAACCATGGTGAAGCCATA+CGG | 0.587731 | 7.4:+34008474 | None:intergenic |
| GAATACCAAGAAGAAAGTGA+AGG | 0.607663 | 7.4:-34008168 | MS.gene95658:CDS |
| TGGGAAGAGATGAAAAGTGA+TGG | 0.608114 | 7.4:-34007019 | MS.gene95658:CDS |
| AATACCAAGAAGAAAGTGAA+GGG | 0.608570 | 7.4:-34008167 | MS.gene95658:CDS |
| AATCATGGAGATTACCTCAA+AGG | 0.616214 | 7.4:-34007766 | MS.gene95658:CDS |
| CCATGTGCTTCCATCAAGTG+TGG | 0.618160 | 7.4:+34007916 | None:intergenic |
| ATGATCATAAGTGGCACTGG+CGG | 0.631598 | 7.4:+34008068 | None:intergenic |
| GTCATCAACATGGTCAACCA+TGG | 0.639550 | 7.4:+34008461 | None:intergenic |
| GGGTATAGTTCAAATCCCCT+CGG | 0.648026 | 7.4:-34008108 | MS.gene95658:CDS |
| CCACACTTGATGGAAGCACA+TGG | 0.654957 | 7.4:-34007916 | MS.gene95658:CDS |
| AAGAGAGTCACCAATAGGAG+TGG | 0.663623 | 7.4:+34007825 | None:intergenic |
| GTTGGACTCCATGCACCACA+GGG | 0.676745 | 7.4:+34008027 | None:intergenic |
| AAAATAATGAACGAAAAGGG+CGG | 0.679821 | 7.4:-34007382 | MS.gene95658:CDS |
| TGGAGATTACCTCAAAGGCG+AGG | 0.686092 | 7.4:-34007761 | MS.gene95658:CDS |
| ATGGATCATAGTCATCAACA+TGG | 0.710348 | 7.4:+34008451 | None:intergenic |
| TGAGCCGTATGGCTTCACCA+TGG | 0.745613 | 7.4:-34008478 | MS.gene95658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAAATAATGAACGAAAA+GGG | - | chr7.4:34008023-34008042 | MS.gene95658:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7.4:34007874-34007893 | MS.gene95658:CDS | 20.0% |
| !!! | AATTTCATGTCATTTTTTGA+AGG | - | chr7.4:34008233-34008252 | MS.gene95658:CDS | 20.0% |
| !!! | ATTGATTATTGTTTTGGAAA+TGG | - | chr7.4:34007801-34007820 | MS.gene95658:CDS | 20.0% |
| !!! | ATTTCATGTCATTTTTTGAA+GGG | - | chr7.4:34008234-34008253 | MS.gene95658:CDS | 20.0% |
| !!! | CACATAATTGATTATTGTTT+TGG | - | chr7.4:34007795-34007814 | MS.gene95658:CDS | 20.0% |
| ! | GATCAAAATAATGAACGAAA+AGG | - | chr7.4:34008022-34008041 | MS.gene95658:CDS | 25.0% |
| ! | TCTATGTGTTCATAGATTAA+AGG | + | chr7.4:34006865-34006884 | None:intergenic | 25.0% |
| ! | TCTTGAATATTACCAATTTG+TGG | + | chr7.4:34007216-34007235 | None:intergenic | 25.0% |
| ! | TGATGAAAAATCTGATTTCA+TGG | + | chr7.4:34007412-34007431 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7.4:34007140-34007159 | None:intergenic | 25.0% |
| !! | AACTGTTGAGATTTTCTATT+TGG | - | chr7.4:34008570-34008589 | MS.gene95658:CDS | 25.0% |
| !! | ACATGCTTATGAATTTTTGA+AGG | - | chr7.4:34008121-34008140 | MS.gene95658:CDS | 25.0% |
| !! | TCAATTACCATATTTTCTTG+TGG | + | chr7.4:34007456-34007475 | None:intergenic | 25.0% |
| !!! | ATTGAGCAAAAATGTTTTGA+TGG | - | chr7.4:34008451-34008470 | MS.gene95658:CDS | 25.0% |
| !!! | CTTTTCAGGTATTTTATCAA+GGG | - | chr7.4:34007691-34007710 | MS.gene95658:CDS | 25.0% |
| AAAATAATGAACGAAAAGGG+CGG | - | chr7.4:34008026-34008045 | MS.gene95658:CDS | 30.0% | |
| AAATGAGAATCAACTTGTGT+TGG | - | chr7.4:34008532-34008551 | MS.gene95658:CDS | 30.0% | |
| AATACCAAGAAGAAAGTGAA+GGG | - | chr7.4:34007241-34007260 | MS.gene95658:CDS | 30.0% | |
| ATAGTTCTTGATCAAATCCT+CGG | + | chr7.4:34008150-34008169 | None:intergenic | 30.0% | |
| ATGAAAATTCTGCATCTGTT+TGG | - | chr7.4:34007901-34007920 | MS.gene95658:CDS | 30.0% | |
| CAATCAAGAGAAGATATACA+AGG | + | chr7.4:34008359-34008378 | None:intergenic | 30.0% | |
| CAATTTCAAACCACATGATT+TGG | + | chr7.4:34007964-34007983 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7.4:34008357-34008376 | MS.gene95658:CDS | 30.0% | |
| GAACATAGTCATCATCAATA+TGG | + | chr7.4:34007002-34007021 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7.4:34007118-34007137 | None:intergenic | 30.0% | |
| GATTCTAATTCCATTAGAGA+TGG | + | chr7.4:34007174-34007193 | None:intergenic | 30.0% | |
| TACTTTGCCACAAGAAAATA+TGG | - | chr7.4:34007446-34007465 | MS.gene95658:CDS | 30.0% | |
| TCATATCATGCTAGAATTGA+AGG | - | chr7.4:34008506-34008525 | MS.gene95658:CDS | 30.0% | |
| TGCATGTGAAATATTGTTTG+TGG | - | chr7.4:34008331-34008350 | MS.gene95658:CDS | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7.4:34007127-34007146 | None:intergenic | 30.0% | |
| TTTATCAAGGGAATTTGGTT+GGG | - | chr7.4:34007703-34007722 | MS.gene95658:CDS | 30.0% | |
| ! | AGCAAGGGAATTATTACTTT+TGG | - | chr7.4:34008173-34008192 | MS.gene95658:CDS | 30.0% |
| ! | ATACTCATAAAGTTCCCTTT+TGG | + | chr7.4:34007940-34007959 | None:intergenic | 30.0% |
| ! | ATCATGTGGTTTGAAATTGA+AGG | - | chr7.4:34007965-34007984 | MS.gene95658:CDS | 30.0% |
| ! | ATGATGATGATGATGATCAA+AGG | + | chr7.4:34006896-34006915 | None:intergenic | 30.0% |
| ! | CATGTGGAAAATTTTGTGAA+GGG | + | chr7.4:34007272-34007291 | None:intergenic | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7.4:34007698-34007717 | MS.gene95658:CDS | 30.0% |
| ! | TCATGTGGAAAATTTTGTGA+AGG | + | chr7.4:34007273-34007292 | None:intergenic | 30.0% |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7.4:34008370-34008389 | MS.gene95658:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7.4:34007702-34007721 | MS.gene95658:CDS | 30.0% |
| !! | GGAATTATTACTTTTGGTGA+TGG | - | chr7.4:34008179-34008198 | MS.gene95658:CDS | 30.0% |
| !!! | GCTTTTCAGGTATTTTATCA+AGG | - | chr7.4:34007690-34007709 | MS.gene95658:CDS | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7.4:34008241-34008260 | MS.gene95658:CDS | 30.0% |
| AATCATGGAGATTACCTCAA+AGG | - | chr7.4:34007642-34007661 | MS.gene95658:CDS | 35.0% | |
| ACCAATTTGTGGACTCAAAA+TGG | + | chr7.4:34007205-34007224 | None:intergenic | 35.0% | |
| AGAATCAACTTGTGTTGGAA+TGG | - | chr7.4:34008537-34008556 | MS.gene95658:CDS | 35.0% | |
| AGTGATGGCTATCATCATAA+AGG | - | chr7.4:34008404-34008423 | MS.gene95658:CDS | 35.0% | |
| ATCAAGAACTATGGTAGCAA+GGG | - | chr7.4:34008158-34008177 | MS.gene95658:CDS | 35.0% | |
| ATGGATCATAGTCATCAACA+TGG | + | chr7.4:34006960-34006979 | None:intergenic | 35.0% | |
| GAAACAGTCTCCAATAGAAA+AGG | + | chr7.4:34007837-34007856 | None:intergenic | 35.0% | |
| GAAATTGAAGGTAGAGGAAA+AGG | - | chr7.4:34007977-34007996 | MS.gene95658:CDS | 35.0% | |
| GAAGTCAGAGAAATGTTGAA+AGG | - | chr7.4:34008473-34008492 | MS.gene95658:CDS | 35.0% | |
| GAATACCAAGAAGAAAGTGA+AGG | - | chr7.4:34007240-34007259 | MS.gene95658:CDS | 35.0% | |
| GAATTTCGAGGATACCAAAA+GGG | - | chr7.4:34007923-34007942 | MS.gene95658:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7.4:34008149-34008168 | MS.gene95658:CDS | 35.0% | |
| GATGATGACTATGTTCCATA+TGG | - | chr7.4:34007006-34007025 | MS.gene95658:CDS | 35.0% | |
| TATGAGTATGCCAAATCATG+TGG | - | chr7.4:34007951-34007970 | MS.gene95658:CDS | 35.0% | |
| TCCAAGGTTTCTTCATCAAT+TGG | + | chr7.4:34007147-34007166 | None:intergenic | 35.0% | |
| TCCAATTGATGAAGAAACCT+TGG | - | chr7.4:34007143-34007162 | MS.gene95658:CDS | 35.0% | |
| TGAAGGGAAATGATCATAAG+TGG | + | chr7.4:34007352-34007371 | None:intergenic | 35.0% | |
| TGAGACACTTGCATATTACT+TGG | - | chr7.4:34007605-34007624 | MS.gene95658:CDS | 35.0% | |
| TGTTCATAGATTAAAGGCCA+TGG | + | chr7.4:34006859-34006878 | None:intergenic | 35.0% | |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7.4:34008369-34008388 | MS.gene95658:CDS | 35.0% |
| ! | TCTGATTTCATGGAAAGTGT+TGG | + | chr7.4:34007402-34007421 | None:intergenic | 35.0% |
| ! | TGGTTTGAAATTGAAGGTAG+AGG | - | chr7.4:34007971-34007990 | MS.gene95658:CDS | 35.0% |
| ! | TGTTCAATGGCCTTTTCTAT+TGG | - | chr7.4:34007824-34007843 | MS.gene95658:CDS | 35.0% |
| ! | TTGGCTTTCAATTTGATGAC+CGG | - | chr7.4:34008062-34008081 | MS.gene95658:CDS | 35.0% |
| !! | AAAGGTGAGATTAGCTTAGA+AGG | - | chr7.4:34008422-34008441 | MS.gene95658:CDS | 35.0% |
| !! | GTTGATGACTATGATCCATA+TGG | - | chr7.4:34006961-34006980 | MS.gene95658:CDS | 35.0% |
| !! | TCCATTTTGAGTCCACAAAT+TGG | - | chr7.4:34007201-34007220 | MS.gene95658:CDS | 35.0% |
| !!! | GTTTTGGAAATGGTGTTCAA+TGG | - | chr7.4:34007811-34007830 | MS.gene95658:CDS | 35.0% |
| AACAGATTCTTCACTCTCCA+TGG | - | chr7.4:34006839-34006858 | MS.gene95658:CDS | 40.0% | |
| AACTCCCTTCACTTTCTTCT+TGG | + | chr7.4:34007248-34007267 | None:intergenic | 40.0% | |
| CAAAAAGTCACCACTCCTAT+TGG | - | chr7.4:34007573-34007592 | MS.gene95658:CDS | 40.0% | |
| CAACTTGTGTTGGAATGGAA+AGG | - | chr7.4:34008542-34008561 | MS.gene95658:CDS | 40.0% | |
| CATTAGAGATGGAAGTTCCA+AGG | + | chr7.4:34007163-34007182 | None:intergenic | 40.0% | |
| CTTCTAACCATTCCCATATG+AGG | + | chr7.4:34008092-34008111 | None:intergenic | 40.0% | |
| CTTGGAACTTCCATCTCTAA+TGG | - | chr7.4:34007161-34007180 | MS.gene95658:CDS | 40.0% | |
| GAAATGATCATAAGTGGCAC+TGG | + | chr7.4:34007346-34007365 | None:intergenic | 40.0% | |
| GAAGGTAGAGGAAAAGGAAT+TGG | - | chr7.4:34007983-34008002 | MS.gene95658:CDS | 40.0% | |
| GATCAAGAACTATGGTAGCA+AGG | - | chr7.4:34008157-34008176 | MS.gene95658:CDS | 40.0% | |
| GATTTGAACTATACCCTTCG+AGG | + | chr7.4:34007296-34007315 | None:intergenic | 40.0% | |
| GCTCAAGTAGTGACAAATCA+TGG | - | chr7.4:34007627-34007646 | MS.gene95658:CDS | 40.0% | |
| GGAATTTCGAGGATACCAAA+AGG | - | chr7.4:34007922-34007941 | MS.gene95658:CDS | 40.0% | |
| TGATCCATATGGCATCATCA+TGG | - | chr7.4:34006972-34006991 | MS.gene95658:CDS | 40.0% | |
| TGGGAAGAGATGAAAAGTGA+TGG | - | chr7.4:34008389-34008408 | MS.gene95658:CDS | 40.0% | |
| TGTTCCATATGGCATCATCA+TGG | - | chr7.4:34007017-34007036 | MS.gene95658:CDS | 40.0% | |
| ! | AATTTTCCACATGACCTCGA+AGG | - | chr7.4:34007279-34007298 | MS.gene95658:CDS | 40.0% |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7.4:34007318-34007337 | None:intergenic | 40.0% |
| ! | ATTTTCCACATGACCTCGAA+GGG | - | chr7.4:34007280-34007299 | MS.gene95658:CDS | 40.0% |
| ! | CAATAGGAGTGGTGACTTTT+TGG | + | chr7.4:34007575-34007594 | None:intergenic | 40.0% |
| ! | CACAGGGAGAATTTTGTGAA+GGG | + | chr7.4:34007368-34007387 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7.4:34007319-34007338 | None:intergenic | 40.0% |
| ! | CGAGGCATACAAGATTTTTC+AGG | - | chr7.4:34007665-34007684 | MS.gene95658:CDS | 40.0% |
| ! | TCATCCATGATGATGCCATA+TGG | + | chr7.4:34006979-34006998 | None:intergenic | 40.0% |
| ! | TGCATCTGTTTGGAATTTCG+AGG | - | chr7.4:34007911-34007930 | MS.gene95658:CDS | 40.0% |
| !! | AGGGAATTTGGTGCATTACA+AGG | - | chr7.4:34008253-34008272 | MS.gene95658:CDS | 40.0% |
| !! | TGAATTTTTGAAGGTAGCCG+AGG | - | chr7.4:34008130-34008149 | MS.gene95658:CDS | 40.0% |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7.4:34007523-34007542 | None:intergenic | 40.0% |
| !!! | GATTTTTCAGGCTGCTTTTC+AGG | - | chr7.4:34007677-34007696 | MS.gene95658:CDS | 40.0% |
| AAAATTCTCCCTGTGGTGCA+TGG | - | chr7.4:34007373-34007392 | MS.gene95658:CDS | 45.0% | |
| AAGAGAGTCACCAATAGGAG+TGG | + | chr7.4:34007586-34007605 | None:intergenic | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7.4:34007482-34007501 | MS.gene95658:CDS | 45.0% | |
| ATGACCGGTCTTCCTCATAT+GGG | - | chr7.4:34008077-34008096 | MS.gene95658:CDS | 45.0% | |
| CATTCCCATATGAGGAAGAC+CGG | + | chr7.4:34008084-34008103 | None:intergenic | 45.0% | |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7.4:34007317-34007336 | MS.gene95658:CDS | 45.0% | |
| CCTTCACAAAATTCTCCCTG+TGG | - | chr7.4:34007366-34007385 | MS.gene95658:CDS | 45.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7.4:34007300-34007319 | MS.gene95658:CDS | 45.0% | |
| GTCATCAACATGGTCAACCA+TGG | + | chr7.4:34006950-34006969 | None:intergenic | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+AGG | + | chr7.4:34007591-34007610 | None:intergenic | 45.0% | |
| TCAACCATGGTGAAGCCATA+CGG | + | chr7.4:34006937-34006956 | None:intergenic | 45.0% | |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7.4:34007482-34007501 | None:intergenic | 45.0% | |
| ! | ATGATCATAAGTGGCACTGG+CGG | + | chr7.4:34007343-34007362 | None:intergenic | 45.0% |
| ! | CATCAAGTTGTTGAGCCGTA+TGG | - | chr7.4:34006919-34006938 | MS.gene95658:CDS | 45.0% |
| ! | CCACAGGGAGAATTTTGTGA+AGG | + | chr7.4:34007369-34007388 | None:intergenic | 45.0% |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7.4:34007320-34007339 | None:intergenic | 45.0% |
| ! | GGTGCATTACAAGGCTTTGT+TGG | - | chr7.4:34008262-34008281 | MS.gene95658:CDS | 45.0% |
| !! | GAGAGTACTGTTCTCTGAAG+TGG | + | chr7.4:34007085-34007104 | None:intergenic | 45.0% |
| !! | GGTGAGATTAGCTTAGAAGG+TGG | - | chr7.4:34008425-34008444 | MS.gene95658:CDS | 45.0% |
| !!! | GGGCGGAAAGAAAGTGTTTT+TGG | - | chr7.4:34008043-34008062 | MS.gene95658:CDS | 45.0% |
| CATGGTGAAGCCTTGGAGAA+AGG | - | chr7.4:34007510-34007529 | MS.gene95658:CDS | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7.4:34007495-34007514 | None:intergenic | 50.0% | |
| CGGTCTTCCTCATATGGGAA+TGG | - | chr7.4:34008082-34008101 | MS.gene95658:CDS | 50.0% | |
| CTATACCCTTCGAGGTCATG+TGG | + | chr7.4:34007288-34007307 | None:intergenic | 50.0% | |
| GATGACCGGTCTTCCTCATA+TGG | - | chr7.4:34008076-34008095 | MS.gene95658:CDS | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7.4:34007659-34007678 | None:intergenic | 50.0% | |
| TGGAGATTACCTCAAAGGCG+AGG | - | chr7.4:34007647-34007666 | MS.gene95658:CDS | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7.4:34007492-34007511 | MS.gene95658:CDS | 50.0% |
| GTTGGACTCCATGCACCACA+GGG | + | chr7.4:34007384-34007403 | None:intergenic | 55.0% | |
| TGAGCCGTATGGCTTCACCA+TGG | - | chr7.4:34006930-34006949 | MS.gene95658:CDS | 55.0% | |
| TGTTGGACTCCATGCACCAC+AGG | + | chr7.4:34007385-34007404 | None:intergenic | 55.0% | |
| ! | GGAAGCACATGGTGAAGCCT+TGG | - | chr7.4:34007503-34007522 | MS.gene95658:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 34006829 | 34008601 | 34006829 | ID=MS.gene95658 |
| chr7.4 | mRNA | 34006829 | 34008601 | 34006829 | ID=MS.gene95658.t1;Parent=MS.gene95658 |
| chr7.4 | exon | 34006829 | 34008601 | 34006829 | ID=MS.gene95658.t1.exon1;Parent=MS.gene95658.t1 |
| chr7.4 | CDS | 34006829 | 34008601 | 34006829 | ID=cds.MS.gene95658.t1;Parent=MS.gene95658.t1 |
| Gene Sequence |
| Protein sequence |
