Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95660.t1 | XP_003623338.1 | 65.8 | 550 | 40 | 3 | 1 | 405 | 39 | 585 | 5.40E-166 | 594 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95660.t1 | G7KSD5 | 65.8 | 550 | 40 | 3 | 1 | 405 | 39 | 585 | 3.9e-166 | 594.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95660.t1 | TF | GRAS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95660.t1 | MTR_7g069740 | 89.686 | 223 | 23 | 0 | 183 | 405 | 363 | 585 | 2.34e-141 | 415 |
| MS.gene95660.t1 | MTR_7g069740 | 51.613 | 248 | 56 | 6 | 1 | 184 | 39 | 286 | 1.91e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACATCAATATTACCAATT+TGG | 0.120002 | 7.4:+33989126 | None:intergenic |
| ACCAATTTGGGGACTCAAAA+TGG | 0.187480 | 7.4:+33989139 | None:intergenic |
| AACATCAATATTACCAATTT+GGG | 0.196501 | 7.4:+33989127 | None:intergenic |
| TTTCTTCATCAATTGGAAAT+TGG | 0.204009 | 7.4:+33989204 | None:intergenic |
| GGTGCATTATAAAGCCTTAT+TGG | 0.222002 | 7.4:-33986872 | MS.gene95660:CDS |
| TACTTTGCCGCAAGAAAATA+TGG | 0.245053 | 7.4:-33987687 | MS.gene95660:CDS |
| CCCTTGATAAAATACCTTAA+AGG | 0.250375 | 7.4:+33987442 | None:intergenic |
| AAATGAGAATCAACTTGTTT+TGG | 0.251878 | 7.4:-33986605 | MS.gene95660:CDS |
| ATCAAGGGAATTGTTACTTT+TGG | 0.291438 | 7.4:-33986961 | MS.gene95660:CDS |
| TTTAGAACTTCCATCTCTAA+TGG | 0.304996 | 7.4:-33989180 | MS.gene95660:CDS |
| CTTGTATATCTTCTCTTGAT+TGG | 0.318337 | 7.4:-33986777 | MS.gene95660:CDS |
| ATACTCATATAGTTCCCTTT+TGG | 0.329361 | 7.4:+33987197 | None:intergenic |
| GATATGATCATTGGTGAATA+TGG | 0.332452 | 7.4:+33989226 | None:intergenic |
| TCTAAAGTTTCTTCATCAAT+TGG | 0.336948 | 7.4:+33989197 | None:intergenic |
| AGACTCAATTGATTCCAATA+AGG | 0.348741 | 7.4:+33986858 | None:intergenic |
| AATGATAGGTCTTCCACATA+TGG | 0.349065 | 7.4:-33987058 | MS.gene95660:CDS |
| TCTTGTATGCCTCGCCTTTG+AGG | 0.376080 | 7.4:+33987477 | None:intergenic |
| TTGGCTTTCAATTTAATGAT+AGG | 0.377944 | 7.4:-33987072 | MS.gene95660:CDS |
| AAAGATGAGATTAGGATAGA+AGG | 0.384020 | 7.4:-33986715 | MS.gene95660:CDS |
| AGTGAGTCTTCCACACTTGA+TGG | 0.390562 | 7.4:-33987651 | MS.gene95660:CDS |
| CTCTTGATTGGTTACAAACA+TGG | 0.411194 | 7.4:-33986765 | MS.gene95660:CDS |
| ACTCATGTGGTTTGAAATTG+AGG | 0.416697 | 7.4:-33987170 | MS.gene95660:CDS |
| GAAATTGAGGGTAGAGGAAA+AGG | 0.420118 | 7.4:-33987157 | MS.gene95660:CDS |
| GAACATAGTCATCATCAATA+TGG | 0.421357 | 7.4:+33989342 | None:intergenic |
| GTTATGTTAAAGATGAGATT+AGG | 0.424905 | 7.4:-33986723 | MS.gene95660:CDS |
| TGAGACACTTGCATATTACT+TGG | 0.425483 | 7.4:-33987528 | MS.gene95660:CDS |
| TGGAAATTGGATATGATCAT+TGG | 0.449728 | 7.4:+33989217 | None:intergenic |
| GAGGATTTGATCAAGAACTA+TGG | 0.452539 | 7.4:-33986985 | MS.gene95660:CDS |
| GATCAAGAACTATGGTATCA+AGG | 0.453234 | 7.4:-33986977 | MS.gene95660:CDS |
| GAGGGTAGAGGAAAAGGAGT+TGG | 0.469574 | 7.4:-33987151 | MS.gene95660:CDS |
| TCATATCAAGCAAGAATTGA+AGG | 0.470729 | 7.4:-33986631 | MS.gene95660:CDS |
| TGCATGTGAAGTGTTGTTTG+TGG | 0.478913 | 7.4:-33986803 | MS.gene95660:CDS |
| ATGATAGGTCTTCCACATAT+GGG | 0.481369 | 7.4:-33987057 | MS.gene95660:CDS |
| GGAAGCACATGGAGAAGCCT+TGG | 0.482996 | 7.4:-33987630 | MS.gene95660:CDS |
| TCATCCATGATGAGGCCATA+TGG | 0.486136 | 7.4:+33989365 | None:intergenic |
| GCTCAAGAAGTGACAAATCA+TGG | 0.494647 | 7.4:-33987506 | MS.gene95660:CDS |
| GATGAGATTAGGATAGAAGG+TGG | 0.506082 | 7.4:-33986712 | MS.gene95660:CDS |
| CTTCTAACCATTCCCATATG+TGG | 0.507260 | 7.4:+33987045 | None:intergenic |
| TCATCAATGATGATGCCATA+TGG | 0.509020 | 7.4:+33989320 | None:intergenic |
| GATGATGACTATGTTCCATA+TGG | 0.514828 | 7.4:-33989335 | MS.gene95660:CDS |
| CATGGAGAAGCCTTGGAGAA+AGG | 0.518604 | 7.4:-33987623 | MS.gene95660:CDS |
| GTCTCAAGAGAGTCACCAAT+AGG | 0.521912 | 7.4:+33987545 | None:intergenic |
| TGGTTTGAAATTGAGGGTAG+AGG | 0.527276 | 7.4:-33987163 | MS.gene95660:CDS |
| CTCATGTGGTTTGAAATTGA+GGG | 0.529548 | 7.4:-33987169 | MS.gene95660:CDS |
| GTTGATGACTATGATCCATA+TGG | 0.532242 | 7.4:-33989380 | MS.gene95660:CDS |
| ATCAAGAACTATGGTATCAA+GGG | 0.539287 | 7.4:-33986976 | MS.gene95660:CDS |
| GAATCTAATTCCATTAGAGA+TGG | 0.557271 | 7.4:+33989170 | None:intergenic |
| TGATCCATATGGCCTCATCA+TGG | 0.565643 | 7.4:-33989369 | MS.gene95660:CDS |
| TCTTGATTGGTTACAAACAT+GGG | 0.569487 | 7.4:-33986764 | MS.gene95660:CDS |
| TCAAGTGTGGAAGACTCACT+TGG | 0.579458 | 7.4:+33987654 | None:intergenic |
| CAATCAAGAGAAGATATACA+AGG | 0.583066 | 7.4:+33986778 | None:intergenic |
| GAAGTCAGAGAAATGTTGAG+AGG | 0.583320 | 7.4:-33986664 | MS.gene95660:CDS |
| AGGTCTTCCACATATGGGAA+TGG | 0.588806 | 7.4:-33987052 | MS.gene95660:CDS |
| CCATGTGCTTCCATCAAGTG+TGG | 0.608241 | 7.4:+33987641 | None:intergenic |
| AATCATGGAGATTACCTCAA+AGG | 0.616214 | 7.4:-33987491 | MS.gene95660:CDS |
| ACATCAATATTACCAATTTG+GGG | 0.626436 | 7.4:+33989128 | None:intergenic |
| CAATATGGTCATCCATGATG+AGG | 0.627867 | 7.4:+33989357 | None:intergenic |
| TATGAGTATGCTAACTCATG+TGG | 0.632716 | 7.4:-33987183 | MS.gene95660:CDS |
| AAAATAATGAACGAAACCTG+TGG | 0.638753 | 7.4:-33987108 | MS.gene95660:CDS |
| GTCATCAACATGGTCAACCA+TGG | 0.639550 | 7.4:+33989394 | None:intergenic |
| CCACACTTGATGGAAGCACA+TGG | 0.643787 | 7.4:-33987641 | MS.gene95660:CDS |
| AAGAGAGTCACCAATAGGAG+TGG | 0.663623 | 7.4:+33987550 | None:intergenic |
| TGGAGATTACCTCAAAGGCG+AGG | 0.686092 | 7.4:-33987486 | MS.gene95660:CDS |
| ATGGATCATAGTCATCAACA+TGG | 0.710348 | 7.4:+33989384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAAATTATTTTAATTTA+AGG | + | chr7.4:33987302-33987321 | None:intergenic | 0.0% |
| !!! | TAATACCATATTAATTTGAA+TGG | + | chr7.4:33987115-33987134 | None:intergenic | 15.0% |
| !!! | TATTTTAATTTAAGGAGAAA+TGG | + | chr7.4:33987294-33987313 | None:intergenic | 15.0% |
| !! | AACATCAATATTACCAATTT+GGG | + | chr7.4:33986826-33986845 | None:intergenic | 20.0% |
| !! | AACTACTAAGTGTTTATATA+TGG | + | chr7.4:33987936-33987955 | None:intergenic | 20.0% |
| !! | AAGAATCATATATTATCGAA+GGG | - | chr7.4:33987404-33987423 | MS.gene95660:intron | 20.0% |
| !! | ACTACTAAGTGTTTATATAT+GGG | + | chr7.4:33987935-33987954 | None:intergenic | 20.0% |
| !! | ATATATAAACACTTAGTAGT+TGG | - | chr7.4:33987935-33987954 | MS.gene95660:intron | 20.0% |
| !! | ATGGTTTCAATATTAAATAG+TGG | + | chr7.4:33987096-33987115 | None:intergenic | 20.0% |
| !! | ATTGATTATTGTTTAGGAAA+TGG | - | chr7.4:33988618-33988637 | MS.gene95660:intron | 20.0% |
| !! | CACATAATTGATTATTGTTT+AGG | - | chr7.4:33988612-33988631 | MS.gene95660:intron | 20.0% |
| !! | GAAATTCAAATTTAACAGTT+TGG | + | chr7.4:33986861-33986880 | None:intergenic | 20.0% |
| !! | GAATTAAAGAATGATCTTAA+CGG | + | chr7.4:33987326-33987345 | None:intergenic | 20.0% |
| !! | GTATTATTACCATTCTATTA+TGG | - | chr7.4:33987129-33987148 | MS.gene95660:CDS | 20.0% |
| !! | TATATAAACACTTAGTAGTT+GGG | - | chr7.4:33987936-33987955 | MS.gene95660:intron | 20.0% |
| !! | TGAAACCATTCAAATTAATA+TGG | - | chr7.4:33987107-33987126 | MS.gene95660:CDS | 20.0% |
| !! | TGAAATTGACATCAATTAAA+TGG | - | chr7.4:33988690-33988709 | MS.gene95660:intron | 20.0% |
| !! | TTCGATAATATATGATTCTT+CGG | + | chr7.4:33987404-33987423 | None:intergenic | 20.0% |
| !!! | AACTGTTAAGATTTTCTATT+TGG | - | chr7.4:33989383-33989402 | MS.gene95660:CDS | 20.0% |
| !!! | TAATACCATATTAATTTGAG+TGG | + | chr7.4:33987163-33987182 | None:intergenic | 20.0% |
| ! | ACATCAATATTACCAATTTG+GGG | + | chr7.4:33986825-33986844 | None:intergenic | 25.0% |
| ! | ATATAAACACTTAGTAGTTG+GGG | - | chr7.4:33987937-33987956 | MS.gene95660:intron | 25.0% |
| ! | ATGAAAATTCTGAATGTGTT+TGG | - | chr7.4:33988717-33988736 | MS.gene95660:intron | 25.0% |
| ! | CAACATCAATATTACCAATT+TGG | + | chr7.4:33986827-33986846 | None:intergenic | 25.0% |
| ! | GAAGAATCATATATTATCGA+AGG | - | chr7.4:33987403-33987422 | MS.gene95660:intron | 25.0% |
| ! | GTTAAATCTAGTGAGAAAAT+TGG | + | chr7.4:33988030-33988049 | None:intergenic | 25.0% |
| ! | GTTATGTTAAAGATGAGATT+AGG | - | chr7.4:33989227-33989246 | MS.gene95660:CDS | 25.0% |
| ! | TATTCTTGTTCATGAATTGT+TGG | + | chr7.4:33988060-33988079 | None:intergenic | 25.0% |
| ! | TTTATGACAAACTTCTAACA+TGG | + | chr7.4:33988589-33988608 | None:intergenic | 25.0% |
| ! | TTTCTTCATCAATTGGAAAT+TGG | + | chr7.4:33986749-33986768 | None:intergenic | 25.0% |
| !! | AAAGAATTTCATTGAGTTGT+CGG | + | chr7.4:33987555-33987574 | None:intergenic | 25.0% |
| !! | AAATGCTTATGAGTTTTTGA+AGG | - | chr7.4:33988937-33988956 | MS.gene95660:intron | 25.0% |
| !! | CAACTCAATGAAATTCTTTT+CGG | - | chr7.4:33987556-33987575 | MS.gene95660:CDS | 25.0% |
| !! | TATGTGGAAAATTTTGTGAA+GGG | + | chr7.4:33988089-33988108 | None:intergenic | 25.0% |
| !! | TCAATTTCCATATTTTCTTG+CGG | + | chr7.4:33988273-33988292 | None:intergenic | 25.0% |
| !! | TCTAAAGTTTCTTCATCAAT+TGG | + | chr7.4:33986756-33986775 | None:intergenic | 25.0% |
| !! | TTATGTGGAAAATTTTGTGA+AGG | + | chr7.4:33988090-33988109 | None:intergenic | 25.0% |
| !! | TTGGCTTTCAATTTAATGAT+AGG | - | chr7.4:33988878-33988897 | MS.gene95660:intron | 25.0% |
| !! | TTTAATTTAAGGAGAAATGG+TGG | + | chr7.4:33987291-33987310 | None:intergenic | 25.0% |
| !!! | AAATGAGAATCAACTTGTTT+TGG | - | chr7.4:33989345-33989364 | MS.gene95660:CDS | 25.0% |
| !!! | ACTTTCAAGTCATTTTTTGA+AGG | - | chr7.4:33989049-33989068 | MS.gene95660:intron | 25.0% |
| !!! | ATTGAGCAAAAATGTTTTGA+TGG | - | chr7.4:33989264-33989283 | MS.gene95660:CDS | 25.0% |
| !!! | CCTTTAAGGTATTTTATCAA+GGG | - | chr7.4:33988508-33988527 | MS.gene95660:intron | 25.0% |
| !!! | CTTTCAAGTCATTTTTTGAA+GGG | - | chr7.4:33989050-33989069 | MS.gene95660:intron | 25.0% |
| !!! | GGTAATATTGATGTTGTTTT+TGG | - | chr7.4:33986831-33986850 | MS.gene95660:CDS | 25.0% |
| AAAATAATGAACGAAACCTG+TGG | - | chr7.4:33988842-33988861 | MS.gene95660:intron | 30.0% | |
| AAAGATGAGATTAGGATAGA+AGG | - | chr7.4:33989235-33989254 | MS.gene95660:CDS | 30.0% | |
| ACTTCTCCAAAACATCAATA+TGG | - | chr7.4:33987238-33987257 | MS.gene95660:intron | 30.0% | |
| AGATCATTCTTTAATTCCGA+CGG | - | chr7.4:33987329-33987348 | MS.gene95660:intron | 30.0% | |
| ATCAAGAACTATGGTATCAA+GGG | - | chr7.4:33988974-33988993 | MS.gene95660:intron | 30.0% | |
| CAATCAAGAGAAGATATACA+AGG | + | chr7.4:33989175-33989194 | None:intergenic | 30.0% | |
| CCCTTGATAAAATACCTTAA+AGG | + | chr7.4:33988511-33988530 | None:intergenic | 30.0% | |
| CTTGTATATCTTCTCTTGAT+TGG | - | chr7.4:33989173-33989192 | MS.gene95660:CDS | 30.0% | |
| GAACATAGTCATCATCAATA+TGG | + | chr7.4:33986611-33986630 | None:intergenic | 30.0% | |
| GAATCTAATTCCATTAGAGA+TGG | + | chr7.4:33986783-33986802 | None:intergenic | 30.0% | |
| GATATGATCATTGGTGAATA+TGG | + | chr7.4:33986727-33986746 | None:intergenic | 30.0% | |
| GGACATTAGTATTACGAAAA+GGG | - | chr7.4:33987351-33987370 | MS.gene95660:intron | 30.0% | |
| TAAAGGGAAATGATCATAAG+TGG | + | chr7.4:33988169-33988188 | None:intergenic | 30.0% | |
| TAACAAAAAACGAGTGACTT+GGG | - | chr7.4:33987625-33987644 | MS.gene95660:CDS | 30.0% | |
| TCATATCAAGCAAGAATTGA+AGG | - | chr7.4:33989319-33989338 | MS.gene95660:CDS | 30.0% | |
| TGAGACCACTCAAATTAATA+TGG | - | chr7.4:33987155-33987174 | MS.gene95660:CDS | 30.0% | |
| TGGAAATTGGATATGATCAT+TGG | + | chr7.4:33986736-33986755 | None:intergenic | 30.0% | |
| TGGATATATTCGAAAGTTTC+TGG | - | chr7.4:33987694-33987713 | MS.gene95660:CDS | 30.0% | |
| TTACAAACTCTCCCTATAAA+AGG | + | chr7.4:33987608-33987627 | None:intergenic | 30.0% | |
| ! | AAGAATTTCATTGAGTTGTC+GGG | + | chr7.4:33987554-33987573 | None:intergenic | 30.0% |
| ! | AGACTCAATTGATTCCAATA+AGG | + | chr7.4:33989095-33989114 | None:intergenic | 30.0% |
| ! | ATACTCATATAGTTCCCTTT+TGG | + | chr7.4:33988756-33988775 | None:intergenic | 30.0% |
| ! | CATAGGGAGAATTTTGTAAA+GGG | + | chr7.4:33988185-33988204 | None:intergenic | 30.0% |
| ! | GGTATTTTATCAAGGGAATT+TGG | - | chr7.4:33988515-33988534 | MS.gene95660:intron | 30.0% |
| ! | TCATAGGGAGAATTTTGTAA+AGG | + | chr7.4:33988186-33988205 | None:intergenic | 30.0% |
| ! | TCTGATTTCATTGAAAGTGT+TGG | + | chr7.4:33988219-33988238 | None:intergenic | 30.0% |
| ! | TCTTGATTGGTTACAAACAT+GGG | - | chr7.4:33989186-33989205 | MS.gene95660:CDS | 30.0% |
| ! | TTTAGAACTTCCATCTCTAA+TGG | - | chr7.4:33986770-33986789 | MS.gene95660:CDS | 30.0% |
| ! | TTTTATCAAGGGAATTTGGT+TGG | - | chr7.4:33988519-33988538 | MS.gene95660:intron | 30.0% |
| !! | GAATTTTGAGAATGCCAAAA+GGG | - | chr7.4:33988739-33988758 | MS.gene95660:intron | 30.0% |
| !!! | AACGCGTTTTGTTTCTTAAT+TGG | - | chr7.4:33987674-33987693 | MS.gene95660:CDS | 30.0% |
| !!! | AGAATCAACTTGTTTTGGAA+TGG | - | chr7.4:33989350-33989369 | MS.gene95660:CDS | 30.0% |
| !!! | ATCAAGGGAATTGTTACTTT+TGG | - | chr7.4:33988989-33989008 | MS.gene95660:intron | 30.0% |
| !!! | ATGTTTTGGAGAAGTTAGAA+TGG | + | chr7.4:33987233-33987252 | None:intergenic | 30.0% |
| !!! | GCCTTTAAGGTATTTTATCA+AGG | - | chr7.4:33988507-33988526 | MS.gene95660:intron | 30.0% |
| !!! | GTCATTTTTTGAAGGGAATT+TGG | - | chr7.4:33989057-33989076 | MS.gene95660:intron | 30.0% |
| AAAATTCTCCCTATGATGCA+TGG | - | chr7.4:33988190-33988209 | MS.gene95660:intron | 35.0% | |
| AAACAAAACGCGTTTGCTTA+AGG | + | chr7.4:33987668-33987687 | None:intergenic | 35.0% | |
| AACAAAAAACGAGTGACTTG+GGG | - | chr7.4:33987626-33987645 | MS.gene95660:CDS | 35.0% | |
| AAGAACACTCTTAATACCGA+AGG | - | chr7.4:33987460-33987479 | MS.gene95660:CDS | 35.0% | |
| AATCATGGAGATTACCTCAA+AGG | - | chr7.4:33988459-33988478 | MS.gene95660:intron | 35.0% | |
| AATGATAGGTCTTCCACATA+TGG | - | chr7.4:33988892-33988911 | MS.gene95660:intron | 35.0% | |
| ACTATGAAAGAACTAGTGTG+TGG | + | chr7.4:33987997-33988016 | None:intergenic | 35.0% | |
| ACTCAACCTAGTAACAACTT+CGG | + | chr7.4:33986900-33986919 | None:intergenic | 35.0% | |
| AGAACACTCTTAATACCGAA+GGG | - | chr7.4:33987461-33987480 | MS.gene95660:CDS | 35.0% | |
| ATGATAGGTCTTCCACATAT+GGG | - | chr7.4:33988893-33988912 | MS.gene95660:intron | 35.0% | |
| ATGGATCATAGTCATCAACA+TGG | + | chr7.4:33986569-33986588 | None:intergenic | 35.0% | |
| CAAAAACTCTTTCTTTCCAC+AGG | + | chr7.4:33988861-33988880 | None:intergenic | 35.0% | |
| CTATGAAAGAACTAGTGTGT+GGG | + | chr7.4:33987996-33988015 | None:intergenic | 35.0% | |
| CTTCGGTAGATGATAGAATT+TGG | + | chr7.4:33986883-33986902 | None:intergenic | 35.0% | |
| GAAACAGTCTCCAATAGAAA+AGG | + | chr7.4:33988654-33988673 | None:intergenic | 35.0% | |
| GACTATGAACTTAAGACCAA+GGG | - | chr7.4:33987426-33987445 | MS.gene95660:intron | 35.0% | |
| GAGAATTACACCCTCAAATA+TGG | - | chr7.4:33987062-33987081 | MS.gene95660:CDS | 35.0% | |
| GAGGATTTGATCAAGAACTA+TGG | - | chr7.4:33988965-33988984 | MS.gene95660:intron | 35.0% | |
| GATCAAGAACTATGGTATCA+AGG | - | chr7.4:33988973-33988992 | MS.gene95660:intron | 35.0% | |
| GATCATTCTTTAATTCCGAC+GGG | - | chr7.4:33987330-33987349 | MS.gene95660:intron | 35.0% | |
| GATGATGACTATGTTCCATA+TGG | - | chr7.4:33986615-33986634 | MS.gene95660:CDS | 35.0% | |
| GGGACATTAGTATTACGAAA+AGG | - | chr7.4:33987350-33987369 | MS.gene95660:intron | 35.0% | |
| GGTCTTAGTACCATATTTGA+GGG | + | chr7.4:33987075-33987094 | None:intergenic | 35.0% | |
| GTAACAAAAAACGAGTGACT+TGG | - | chr7.4:33987624-33987643 | MS.gene95660:CDS | 35.0% | |
| GTCTTAAAAATGTCCCACAT+TGG | + | chr7.4:33987970-33987989 | None:intergenic | 35.0% | |
| GTTTAGGAAATGGTGTTCAA+TGG | - | chr7.4:33988628-33988647 | MS.gene95660:intron | 35.0% | |
| TAAAAATGTCCCACATTGGA+GGG | + | chr7.4:33987966-33987985 | None:intergenic | 35.0% | |
| TACTTTGCCGCAAGAAAATA+TGG | - | chr7.4:33988263-33988282 | MS.gene95660:intron | 35.0% | |
| TATGAGTATGCTAACTCATG+TGG | - | chr7.4:33988767-33988786 | MS.gene95660:intron | 35.0% | |
| TGAGACACTTGCATATTACT+TGG | - | chr7.4:33988422-33988441 | MS.gene95660:intron | 35.0% | |
| TGGGAAGAGATGAAAAAAGA+TGG | - | chr7.4:33989205-33989224 | MS.gene95660:CDS | 35.0% | |
| TTAAAAATGTCCCACATTGG+AGG | + | chr7.4:33987967-33987986 | None:intergenic | 35.0% | |
| TTAATCGAACAGTTGTAGCT+GGG | + | chr7.4:33987017-33987036 | None:intergenic | 35.0% | |
| ! | AATTTTCCACATAACCTCGA+AGG | - | chr7.4:33988096-33988115 | MS.gene95660:intron | 35.0% |
| ! | ACTCATGTGGTTTGAAATTG+AGG | - | chr7.4:33988780-33988799 | MS.gene95660:intron | 35.0% |
| ! | ATTTTCCACATAACCTCGAA+GGG | - | chr7.4:33988097-33988116 | MS.gene95660:intron | 35.0% |
| ! | CTCATGTGGTTTGAAATTGA+GGG | - | chr7.4:33988781-33988800 | MS.gene95660:intron | 35.0% |
| ! | CTCTTGATTGGTTACAAACA+TGG | - | chr7.4:33989185-33989204 | MS.gene95660:CDS | 35.0% |
| ! | CTGTGGAAAGAAAGAGTTTT+TGG | - | chr7.4:33988859-33988878 | MS.gene95660:intron | 35.0% |
| ! | GGTGCATTATAAAGCCTTAT+TGG | - | chr7.4:33989078-33989097 | MS.gene95660:intron | 35.0% |
| ! | GTAGTGCCATATTGATGTTT+TGG | + | chr7.4:33987247-33987266 | None:intergenic | 35.0% |
| ! | TCATCAATGATGATGCCATA+TGG | + | chr7.4:33986633-33986652 | None:intergenic | 35.0% |
| ! | TGGTCTTAGTACCATATTTG+AGG | + | chr7.4:33987076-33987095 | None:intergenic | 35.0% |
| ! | TGTTCAATGGCCTTTTCTAT+TGG | - | chr7.4:33988641-33988660 | MS.gene95660:intron | 35.0% |
| ! | TTTCGGTGTGAAGAATGAAT+GGG | - | chr7.4:33987573-33987592 | MS.gene95660:CDS | 35.0% |
| !! | GGAATTTTGAGAATGCCAAA+AGG | - | chr7.4:33988738-33988757 | MS.gene95660:intron | 35.0% |
| !! | GTTGATGACTATGATCCATA+TGG | - | chr7.4:33986570-33986589 | MS.gene95660:CDS | 35.0% |
| !! | TTTTCGGTGTGAAGAATGAA+TGG | - | chr7.4:33987572-33987591 | MS.gene95660:CDS | 35.0% |
| !! | TTTTGGAGAAGTTAGAATGG+TGG | + | chr7.4:33987230-33987249 | None:intergenic | 35.0% |
| !!! | CAACTTGTTTTGGAATGGAA+AGG | - | chr7.4:33989355-33989374 | MS.gene95660:CDS | 35.0% |
| !!! | GGAATTGTTACTTTTGGTGA+TGG | - | chr7.4:33988995-33989014 | MS.gene95660:intron | 35.0% |
| AACTTAAGACCAAGGGACTA+TGG | - | chr7.4:33987433-33987452 | MS.gene95660:intron | 40.0% | |
| ACCAATTTGGGGACTCAAAA+TGG | + | chr7.4:33986814-33986833 | None:intergenic | 40.0% | |
| AGTCTACCTTGCACAACTTT+GGG | + | chr7.4:33986963-33986982 | None:intergenic | 40.0% | |
| CAAAAAGTCACCACTCCTAT+TGG | - | chr7.4:33988390-33988409 | MS.gene95660:intron | 40.0% | |
| CAATATGGTCATCCATGATG+AGG | + | chr7.4:33986596-33986615 | None:intergenic | 40.0% | |
| CATCTACCGAAGTTGTTACT+AGG | - | chr7.4:33986891-33986910 | MS.gene95660:CDS | 40.0% | |
| CTTCTAACCATTCCCATATG+TGG | + | chr7.4:33988908-33988927 | None:intergenic | 40.0% | |
| GAAATGATCATAAGTGGCAC+TGG | + | chr7.4:33988163-33988182 | None:intergenic | 40.0% | |
| GAAATTGAGGGTAGAGGAAA+AGG | - | chr7.4:33988793-33988812 | MS.gene95660:intron | 40.0% | |
| GAAGTCAGAGAAATGTTGAG+AGG | - | chr7.4:33989286-33989305 | MS.gene95660:CDS | 40.0% | |
| GATGAGATTAGGATAGAAGG+TGG | - | chr7.4:33989238-33989257 | MS.gene95660:CDS | 40.0% | |
| GATTTGAACTATACCCTTCG+AGG | + | chr7.4:33988113-33988132 | None:intergenic | 40.0% | |
| GCACTACAACCACTCAAATA+TGG | - | chr7.4:33987260-33987279 | MS.gene95660:intron | 40.0% | |
| GCTCAAGAAGTGACAAATCA+TGG | - | chr7.4:33988444-33988463 | MS.gene95660:intron | 40.0% | |
| GGACTATGAACTTAAGACCA+AGG | - | chr7.4:33987425-33987444 | MS.gene95660:intron | 40.0% | |
| GTCTCAGCACCATAATAGAA+TGG | + | chr7.4:33987141-33987160 | None:intergenic | 40.0% | |
| GTGGTAACACCATATTTGAG+TGG | + | chr7.4:33987211-33987230 | None:intergenic | 40.0% | |
| GTGGTATCACCATATTTGAG+TGG | + | chr7.4:33987272-33987291 | None:intergenic | 40.0% | |
| GTTAATCGAACAGTTGTAGC+TGG | + | chr7.4:33987018-33987037 | None:intergenic | 40.0% | |
| TAGTCTACCTTGCACAACTT+TGG | + | chr7.4:33986964-33986983 | None:intergenic | 40.0% | |
| TCGTAATACTAATGTCCCGT+CGG | + | chr7.4:33987348-33987367 | None:intergenic | 40.0% | |
| TTAATACCGAAGGGACAGAA+AGG | - | chr7.4:33987470-33987489 | MS.gene95660:CDS | 40.0% | |
| TTCTTAAGACCATAGTCCCT+TGG | + | chr7.4:33987445-33987464 | None:intergenic | 40.0% | |
| ! | ATTTTACAACTGTCTCCGAG+GGG | + | chr7.4:33988135-33988154 | None:intergenic | 40.0% |
| ! | CAATAGGAGTGGTGACTTTT+TGG | + | chr7.4:33988392-33988411 | None:intergenic | 40.0% |
| ! | CATTTTACAACTGTCTCCGA+GGG | + | chr7.4:33988136-33988155 | None:intergenic | 40.0% |
| ! | CGAGGCATACAAGAATTTTC+AGG | - | chr7.4:33988482-33988501 | MS.gene95660:intron | 40.0% |
| ! | TGGTTTGAAATTGAGGGTAG+AGG | - | chr7.4:33988787-33988806 | MS.gene95660:intron | 40.0% |
| ! | TTCGGTGTGAAGAATGAATG+GGG | - | chr7.4:33987574-33987593 | MS.gene95660:CDS | 40.0% |
| !! | AAGTTTCTGGATACGCGTTT+TGG | - | chr7.4:33987707-33987726 | MS.gene95660:CDS | 40.0% |
| !! | GAATTTTCAGGCTGCCTTTA+AGG | - | chr7.4:33988494-33988513 | MS.gene95660:intron | 40.0% |
| !! | TCCATTTTGAGTCCCCAAAT+TGG | - | chr7.4:33986810-33986829 | MS.gene95660:CDS | 40.0% |
| !! | TGAGTTTTTGAAGGTAGCAG+AGG | - | chr7.4:33988946-33988965 | MS.gene95660:intron | 40.0% |
| !! | TGCATGTGAAGTGTTGTTTG+TGG | - | chr7.4:33989147-33989166 | MS.gene95660:CDS | 40.0% |
| !! | TGCTTTTTGTCCTTTCTCCA+AGG | + | chr7.4:33988340-33988359 | None:intergenic | 40.0% |
| AAGAGAGTCACCAATAGGAG+TGG | + | chr7.4:33988403-33988422 | None:intergenic | 45.0% | |
| AGAAACTCGCTATCGCAAGT+CGG | - | chr7.4:33987505-33987524 | MS.gene95660:CDS | 45.0% | |
| AGGTCTTCCACATATGGGAA+TGG | - | chr7.4:33988898-33988917 | MS.gene95660:intron | 45.0% | |
| AGTGAGTCTTCCACACTTGA+TGG | - | chr7.4:33988299-33988318 | MS.gene95660:intron | 45.0% | |
| CCTCGGAGACAGTTGTAAAA+TGG | - | chr7.4:33988134-33988153 | MS.gene95660:intron | 45.0% | |
| CTATACCCTTCGAGGTTATG+TGG | + | chr7.4:33988105-33988124 | None:intergenic | 45.0% | |
| GGGTATAGTTCAAATCCCCT+CGG | - | chr7.4:33988117-33988136 | MS.gene95660:intron | 45.0% | |
| GTCTCAAGAGAGTCACCAAT+AGG | + | chr7.4:33988408-33988427 | None:intergenic | 45.0% | |
| GTGCTGAGACCACTCAAATA+TGG | - | chr7.4:33987199-33987218 | MS.gene95660:CDS | 45.0% | |
| GTTGGACTCCATGCATCATA+GGG | + | chr7.4:33988201-33988220 | None:intergenic | 45.0% | |
| TCAAGTGTGGAAGACTCACT+TGG | + | chr7.4:33988299-33988318 | None:intergenic | 45.0% | |
| TCATCCATGATGAGGCCATA+TGG | + | chr7.4:33986588-33986607 | None:intergenic | 45.0% | |
| TCTACTCCTTTCTGTCCCTT+CGG | + | chr7.4:33987479-33987498 | None:intergenic | 45.0% | |
| TGATCCATATGGCCTCATCA+TGG | - | chr7.4:33986581-33986600 | MS.gene95660:CDS | 45.0% | |
| TGTTGGACTCCATGCATCAT+AGG | + | chr7.4:33988202-33988221 | None:intergenic | 45.0% | |
| TTTGTTACGCGTAGCGCTTA+CGG | - | chr7.4:33987755-33987774 | MS.gene95660:intron | 45.0% | |
| ! | ATGATCATAAGTGGCACTGG+CGG | + | chr7.4:33988160-33988179 | None:intergenic | 45.0% |
| ! | CCATTTTACAACTGTCTCCG+AGG | + | chr7.4:33988137-33988156 | None:intergenic | 45.0% |
| !! | GCTCTCTTTAAGACGTTTCG+TGG | - | chr7.4:33986932-33986951 | MS.gene95660:CDS | 45.0% |
| !! | TCTGGATACGCGTTTTGGAT+CGG | - | chr7.4:33987712-33987731 | MS.gene95660:CDS | 45.0% |
| !!! | TAGCTGGGCTTGTTTTATCC+TGG | + | chr7.4:33987002-33987021 | None:intergenic | 45.0% |
| ACGTCTTAAAGAGAGCGACC+TGG | + | chr7.4:33986928-33986947 | None:intergenic | 50.0% | |
| ATGGGCAAAGTGACCTCCAA+GGG | + | chr7.4:33987917-33987936 | None:intergenic | 50.0% | |
| CATGGAGAAGCCTTGGAGAA+AGG | - | chr7.4:33988327-33988346 | MS.gene95660:intron | 50.0% | |
| CCATGTGCTTCCATCAAGTG+TGG | + | chr7.4:33988312-33988331 | None:intergenic | 50.0% | |
| GAGGGTAGAGGAAAAGGAGT+TGG | - | chr7.4:33988799-33988818 | MS.gene95660:intron | 50.0% | |
| GCACTACCCAAAGTTGTGCA+AGG | - | chr7.4:33986954-33986973 | MS.gene95660:CDS | 50.0% | |
| TATGGGCAAAGTGACCTCCA+AGG | + | chr7.4:33987918-33987937 | None:intergenic | 50.0% | |
| TCTTGTATGCCTCGCCTTTG+AGG | + | chr7.4:33988476-33988495 | None:intergenic | 50.0% | |
| TGGAGATTACCTCAAAGGCG+AGG | - | chr7.4:33988464-33988483 | MS.gene95660:intron | 50.0% | |
| ! | CCACACTTGATGGAAGCACA+TGG | - | chr7.4:33988309-33988328 | MS.gene95660:intron | 50.0% |
| ! | GGGCGAGCTCTCCTTTTATA+GGG | - | chr7.4:33987594-33987613 | MS.gene95660:CDS | 50.0% |
| ! | TACTAGGTTGAGTCACGACC+AGG | - | chr7.4:33986907-33986926 | MS.gene95660:CDS | 50.0% |
| !! | ATACGCGTTTTGGATCGGGT+CGG | - | chr7.4:33987717-33987736 | MS.gene95660:intron | 50.0% |
| !! | CTGGATACGCGTTTTGGATC+GGG | - | chr7.4:33987713-33987732 | MS.gene95660:CDS | 50.0% |
| !!! | CTGGGCTTGTTTTATCCTGG+AGG | + | chr7.4:33986999-33987018 | None:intergenic | 50.0% |
| !!! | GGCTTGTTTTATCCTGGAGG+CGG | + | chr7.4:33986996-33987015 | None:intergenic | 50.0% |
| AACTCGCTATCGCAAGTCGG+AGG | - | chr7.4:33987508-33987527 | MS.gene95660:CDS | 55.0% | |
| ACTCGCTATCGCAAGTCGGA+GGG | - | chr7.4:33987509-33987528 | MS.gene95660:CDS | 55.0% | |
| TTGGGGTGACCCTCCAATGT+GGG | - | chr7.4:33987954-33987973 | MS.gene95660:intron | 55.0% | |
| ! | GGAAGCACATGGAGAAGCCT+TGG | - | chr7.4:33988320-33988339 | MS.gene95660:intron | 55.0% |
| ! | GGGGCGAGCTCTCCTTTTAT+AGG | - | chr7.4:33987593-33987612 | MS.gene95660:CDS | 55.0% |
| GTTGGGGTGACCCTCCAATG+TGG | - | chr7.4:33987953-33987972 | MS.gene95660:intron | 60.0% | |
| ! | ACCTCCAAGGGTGTGCCCTT+GGG | + | chr7.4:33987905-33987924 | None:intergenic | 60.0% |
| ! | GTTTTATCCTGGAGGCGGCG+TGG | + | chr7.4:33986991-33987010 | None:intergenic | 60.0% |
| CTATCAACCACGCCGCCTCC+AGG | - | chr7.4:33986981-33987000 | MS.gene95660:CDS | 65.0% | |
| ! | GACCTCCAAGGGTGTGCCCT+TGG | + | chr7.4:33987906-33987925 | None:intergenic | 65.0% |
| ! | GCCCAAGGGCACACCCTTGG+AGG | - | chr7.4:33987901-33987920 | MS.gene95660:intron | 70.0% |
| GACCCAAGCCCCACCCGACC+CGG | - | chr7.4:33987857-33987876 | MS.gene95660:intron | 75.0% | |
| GTCGGACGGACGGCGCCCAA+GGG | - | chr7.4:33987887-33987906 | MS.gene95660:intron | 75.0% | |
| GTCGGGTGGGGCTTGGGTCG+TGG | + | chr7.4:33987856-33987875 | None:intergenic | 75.0% | |
| ! | GGCGCCCAAGGGCACACCCT+TGG | - | chr7.4:33987898-33987917 | MS.gene95660:intron | 75.0% |
| ! | ACCCGACCCGGCCGGTCGGT+CGG | - | chr7.4:33987869-33987888 | MS.gene95660:intron | 80.0% |
| ! | ACCGACCGGCCGGGTCGGGT+GGG | + | chr7.4:33987869-33987888 | None:intergenic | 80.0% |
| ! | CAAGCCCCACCCGACCCGGC+CGG | - | chr7.4:33987861-33987880 | MS.gene95660:intron | 80.0% |
| ! | CGGCCGGTCGGTCGGACGGA+CGG | - | chr7.4:33987877-33987896 | MS.gene95660:intron | 80.0% |
| ! | CGTCCGTCCGACCGACCGGC+CGG | + | chr7.4:33987879-33987898 | None:intergenic | 80.0% |
| ! | GACCCGGCCGGTCGGTCGGA+CGG | - | chr7.4:33987873-33987892 | MS.gene95660:intron | 80.0% |
| ! | GCGCCGTCCGTCCGACCGAC+CGG | + | chr7.4:33987883-33987902 | None:intergenic | 80.0% |
| ! | GGCCGGGTCGGGTGGGGCTT+GGG | + | chr7.4:33987862-33987881 | None:intergenic | 80.0% |
| ! | GGTCGGACGGACGGCGCCCA+AGG | - | chr7.4:33987886-33987905 | MS.gene95660:intron | 80.0% |
| ! | GTCCGACCGACCGGCCGGGT+CGG | + | chr7.4:33987874-33987893 | None:intergenic | 80.0% |
| ! | GTCCGTCCGACCGACCGGCC+GGG | + | chr7.4:33987878-33987897 | None:intergenic | 80.0% |
| ! | TCCGACCGACCGGCCGGGTC+GGG | + | chr7.4:33987873-33987892 | None:intergenic | 80.0% |
| ! | CCCCACCCGACCCGGCCGGT+CGG | - | chr7.4:33987865-33987884 | MS.gene95660:intron | 85.0% |
| ! | CCGACCGGCCGGGTCGGGTG+GGG | + | chr7.4:33987868-33987887 | None:intergenic | 85.0% |
| ! | CGGCCGGGTCGGGTGGGGCT+TGG | + | chr7.4:33987863-33987882 | None:intergenic | 85.0% |
| ! | GACCGACCGGCCGGGTCGGG+TGG | + | chr7.4:33987870-33987889 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 33986558 | 33989414 | 33986558 | ID=MS.gene95660 |
| chr7.4 | mRNA | 33986558 | 33989414 | 33986558 | ID=MS.gene95660.t1;Parent=MS.gene95660 |
| chr7.4 | exon | 33989141 | 33989414 | 33989141 | ID=MS.gene95660.t1.exon1;Parent=MS.gene95660.t1 |
| chr7.4 | CDS | 33989141 | 33989414 | 33989141 | ID=cds.MS.gene95660.t1;Parent=MS.gene95660.t1 |
| chr7.4 | exon | 33987457 | 33987734 | 33987457 | ID=MS.gene95660.t1.exon2;Parent=MS.gene95660.t1 |
| chr7.4 | CDS | 33987457 | 33987734 | 33987457 | ID=cds.MS.gene95660.t1;Parent=MS.gene95660.t1 |
| chr7.4 | exon | 33986558 | 33987223 | 33986558 | ID=MS.gene95660.t1.exon3;Parent=MS.gene95660.t1 |
| chr7.4 | CDS | 33986558 | 33987223 | 33986558 | ID=cds.MS.gene95660.t1;Parent=MS.gene95660.t1 |
| Gene Sequence |
| Protein sequence |
