AlfalfaGEDB | MS.gene95670

M. sativa cultivar XinJiangDaYe / MS.gene95670

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95670.t1	XP_024626741.1	91.5	272	22	1	1	272	1	271	5.60E-135	490.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95670.t1	Q39262	41.8	98	48	4	82	179	57	145	2.0e-08	61.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95670.t1	A0A396H587	57.1	280	89	7	20	272	1	276	5.6e-68	267.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene95670.t1	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95670.t1	MTR_1g013130	39.200	125	61	5	63	179	76	193	1.72e-12	66.2
MS.gene95670.t1	MTR_3g011990	43.678	87	32	3	67	146	72	148	1.95e-11	63.5
MS.gene95670.t1	MTR_3g012010	49.254	67	27	1	66	125	71	137	2.19e-11	63.5
MS.gene95670.t1	MTR_8g466760	46.667	75	27	3	77	148	86	150	4.00e-11	62.8
MS.gene95670.t1	MTR_7g026977	36.111	108	60	2	26	126	83	188	6.19e-11	62.4
MS.gene95670.t1	MTR_3g065020	71.795	39	9	1	80	118	82	118	9.51e-11	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene95670.t1	AT5G10970	39.837	123	48	6	63	179	84	186	1.31e-11	63.9
MS.gene95670.t1	AT5G25160	41.837	98	48	4	82	179	57	145	1.72e-11	63.2
MS.gene95670.t1	AT1G80730	68.293	41	11	1	78	118	60	98	5.12e-11	61.6

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Find 81 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCAAACGCAAAATGG+TGG	0.616518	7.4:+33826013	MS.gene95670:CDS
AACCTCTGAATCTGATGTTG+AGG	0.555993	7.4:+33826088	MS.gene95670:CDS
AACTCTACCACTTTCTGCTC+AGG	0.502340	7.4:-33826215	None:intergenic
AAGAGATGGATTCAACCCTA+TGG	0.564603	7.4:+33826351	MS.gene95670:CDS
AAGGTCAAACACTTTGGGTT+TGG	0.344659	7.4:+33826637	MS.gene95670:CDS
AATAGAGCTTGAAAACCATA+GGG	0.593787	7.4:-33826366	None:intergenic
AATGCCTTTCCTTCTTGGCT+CGG	0.453136	7.4:+33826458	MS.gene95670:CDS
AATGGAAGATAAAAGGAGAG+AGG	0.557828	7.4:+33826328	MS.gene95670:CDS
AATTTCCATTGGAAATGATG+AGG	0.604935	7.4:+33825986	MS.gene95670:CDS
ACCACTTTCTGCTCAGGTAA+AGG	0.442903	7.4:-33826209	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGAGCTTGAAAACCATA+GGG	-	chr7.4:33826369-33826388	None:intergenic	30.0%
AATTTCCATTGGAAATGATG+AGG	+	chr7.4:33825986-33826005	MS.gene95670:CDS	30.0%
ATTAGAGTCGAAATCAAAGA+AGG	+	chr7.4:33826046-33826065	MS.gene95670:CDS	30.0%
ATTTCCAATGGAAATTCTCT+CGG	-	chr7.4:33825982-33826001	None:intergenic	30.0%
TGAATTATGCCTTCTCTATT+AGG	-	chr7.4:33826731-33826750	None:intergenic	30.0%
TTAGGATCACGAGATAATAA+TGG	-	chr7.4:33826713-33826732	None:intergenic	30.0%
AATGGAAGATAAAAGGAGAG+AGG	+	chr7.4:33826328-33826347	MS.gene95670:CDS	35.0%
GAATAGAGCTTGAAAACCAT+AGG	-	chr7.4:33826370-33826389	None:intergenic	35.0%
GATTTACTAACCCTAAGACT+TGG	+	chr7.4:33826110-33826129	MS.gene95670:CDS	35.0%
TAGAAACCTCAAACGCAAAA+TGG	+	chr7.4:33826010-33826029	MS.gene95670:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	33825975	33826793	33825975	ID=MS.gene95670
chr7.4	mRNA	33825975	33826793	33825975	ID=MS.gene95670.t1;Parent=MS.gene95670
chr7.4	exon	33825975	33826793	33825975	ID=MS.gene95670.t1.exon1;Parent=MS.gene95670.t1
chr7.4	CDS	33825975	33826793	33825975	ID=cds.MS.gene95670.t1;Parent=MS.gene95670.t1

Gene Sequence

>MS.gene95670

ATGTCCGAGAGAATTTCCATTGGAAATGATGAGGATAGAAACCTCAAACGCAAAATGGTGGAGGAGCCAAAATTAGAGTCGAAATCAAAGAAGGAGTCAAAGACAATGACACCAACCTCTGAATCTGATGTTGAGGATTTACTAACCCTAAGACTTGGCACTCACACCAAGTCCACTTCCAAACCCTTGGAGAACGGTGGACATTCAAGTTCATTTCAAAACACTACTGATGAACCTTTACCTGAGCAGAAAGTGGTAGAGTTCTCTTGTAATTATTGTGACAAGAAATTCTCCACTTCTCAAGCTCTTGGAGGTCACCAAAATGCTCATAAGCGTGAACGTGTCTTAAAAAAAATGGAAGATAAAAGGAGAGAGGAAGAGATGGATTCAACCCTATGGTTTTCAAGCTCTATTCACTATCAAGGCCATTCATATTTCCGTAGTGCTAACTTGCACAACCCAATTGGCGTCCAATATGTGACCAATGCCTTTCCTTCTTGGCTCGGTTCACCTTATGGTGGCTATGGAGGGGTGTATATGCCAAATACACCCTTTGCAACCCGGTATGTGATGCAAATGCCAAATTCACCCCAAGCAACAACACAATTTGGGATGACTAATTTTTGGGGTGGAGGTCAAAATGCTGCATTTCCAATTCCACAAAGGTCAAACACTTTGGGTTTGGGACTTTTTCCTCAAAGAAATTTCATTGATCAACTTCGTTCTCATACTCTTCCATTATTATCTCGTGATCCTAATAGAGAAGGCATAATTCAGGCAAATCCCAATGTGTCCTCATCATCAACTCAATCAACGTAG

Protein sequence

>MS.gene95670.t1

MSERISIGNDEDRNLKRKMVEEPKLESKSKKESKTMTPTSESDVEDLLTLRLGTHTKSTSKPLENGGHSSSFQNTTDEPLPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDKRREEEMDSTLWFSSSIHYQGHSYFRSANLHNPIGVQYVTNAFPSWLGSPYGGYGGVYMPNTPFATRYVMQMPNSPQATTQFGMTNFWGGGQNAAFPIPQRSNTLGLGLFPQRNFIDQLRSHTLPLLSRDPNREGIIQANPNVSSSSTQST