Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95756.t1 | KEH29621.1 | 69 | 71 | 22 | 0 | 108 | 178 | 112 | 182 | 3.60E-13 | 85.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95756.t1 | O22533 | 66.7 | 42 | 13 | 1 | 30 | 71 | 78 | 118 | 5.6e-07 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95756.t1 | A0A072UJK9 | 69.0 | 71 | 22 | 0 | 108 | 178 | 112 | 182 | 2.6e-13 | 85.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95756.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95756.t1 | MTR_4g046100 | 85.915 | 71 | 10 | 0 | 108 | 178 | 112 | 182 | 2.26e-33 | 119 |
| MS.gene95756.t1 | MTR_8g045340 | 50.000 | 94 | 42 | 3 | 74 | 165 | 239 | 329 | 1.13e-16 | 76.6 |
| MS.gene95756.t1 | MTR_1g106730 | 61.111 | 54 | 8 | 1 | 11 | 64 | 65 | 105 | 1.39e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGTGCCAAATGATAAT+AGG | 0.276687 | 4.1:+54063997 | None:intergenic |
| GATCATTTGGCACTTGAAAA+TGG | 0.288965 | 4.1:-54064034 | MS.gene95756:CDS |
| CATCTTGCAAATCCTGAAAA+TGG | 0.313824 | 4.1:-54064082 | MS.gene95756:CDS |
| GTCTGCATCCTATTATCATT+TGG | 0.387158 | 4.1:-54064005 | MS.gene95756:CDS |
| ATTGGTATTGGCCATCTCAT+TGG | 0.389731 | 4.1:+54064057 | None:intergenic |
| TTCAAGTGCCAAATGATCAT+TGG | 0.398093 | 4.1:+54064039 | None:intergenic |
| GGCCAATACCAATGATCATT+TGG | 0.407299 | 4.1:-54064047 | MS.gene95756:CDS |
| TGATGAAGATTTACGGTGGC+TGG | 0.425019 | 4.1:+54065759 | None:intergenic |
| CCACCAAGTGCTTGATAAGA+TGG | 0.454419 | 4.1:+54065790 | None:intergenic |
| GTGAAGATGATGATTCGATT+TGG | 0.467194 | 4.1:+54065890 | None:intergenic |
| TGCCAAATGATCATTGGTAT+TGG | 0.477380 | 4.1:+54064045 | None:intergenic |
| TTGCGTTAATGCATTGGTAC+GGG | 0.483144 | 4.1:+54063955 | None:intergenic |
| CATGTGTCCCCTACGGTTAG+TGG | 0.483322 | 4.1:-54064118 | MS.gene95756:CDS |
| TTTGCGTTAATGCATTGGTA+CGG | 0.484633 | 4.1:+54063954 | None:intergenic |
| CACTTGTGGTTCAACTTCAC+TGG | 0.486792 | 4.1:+54065835 | None:intergenic |
| CCATCTTATCAAGCACTTGG+TGG | 0.494016 | 4.1:-54065790 | MS.gene95756:CDS |
| TTTGCAAGATGTGTGTCAAC+TGG | 0.501548 | 4.1:+54064094 | None:intergenic |
| GTCTGCTCAGGTGCCGCAGA+TGG | 0.504006 | 4.1:+54064148 | None:intergenic |
| TGTCGCAAACACTGCACTTG+TGG | 0.505114 | 4.1:+54065821 | None:intergenic |
| TGGTTCAACTTCACTGGTGA+TGG | 0.505953 | 4.1:+54065841 | None:intergenic |
| ACATGATGTTCAGTCTGCTC+AGG | 0.537680 | 4.1:+54064136 | None:intergenic |
| TGTGGTTTGCGTTAATGCAT+TGG | 0.538245 | 4.1:+54063949 | None:intergenic |
| GCAAACCACATGGTTAGAAT+CGG | 0.539371 | 4.1:-54063936 | MS.gene95756:CDS |
| TTTCCATCTTATCAAGCACT+TGG | 0.542353 | 4.1:-54065793 | MS.gene95756:CDS |
| ATTACACAATCCCCTCCTCA+TGG | 0.549361 | 4.1:+54063870 | None:intergenic |
| GAAACTCTCCTCCATGAGGA+GGG | 0.569668 | 4.1:-54063881 | MS.gene95756:CDS |
| TGAAAATGGTTCCAATGAGA+TGG | 0.570022 | 4.1:-54064068 | MS.gene95756:CDS |
| CGAAACTCTCCTCCATGAGG+AGG | 0.585716 | 4.1:-54063882 | MS.gene95756:CDS |
| GGTGTCGTAATTTCAGATGT+TGG | 0.588545 | 4.1:+54064169 | None:intergenic |
| CAACTGGACCACTAACCGTA+GGG | 0.592519 | 4.1:+54064110 | None:intergenic |
| GGTGATGGCGGCAACTGCAA+CGG | 0.596265 | 4.1:+54065856 | None:intergenic |
| AAACTCTCCTCCATGAGGAG+GGG | 0.607869 | 4.1:-54063880 | MS.gene95756:CDS |
| ATTGGTACGGGCAATCTCAT+CGG | 0.611220 | 4.1:+54063967 | None:intergenic |
| TGAACATCATGTGTCCCCTA+CGG | 0.622362 | 4.1:-54064125 | MS.gene95756:CDS |
| TCAACTGGACCACTAACCGT+AGG | 0.625130 | 4.1:+54064109 | None:intergenic |
| TTCAACTTCACTGGTGATGG+CGG | 0.633241 | 4.1:+54065844 | None:intergenic |
| TGAAATTACGACACCATCTG+CGG | 0.633569 | 4.1:-54064161 | MS.gene95756:CDS |
| ATGCATTAACGCAAACCACA+TGG | 0.638515 | 4.1:-54063946 | MS.gene95756:CDS |
| CAGAACCGATTCTAACCATG+TGG | 0.651961 | 4.1:+54063931 | None:intergenic |
| AATCGAAACTCTCCTCCATG+AGG | 0.675009 | 4.1:-54063885 | MS.gene95756:CDS |
| AACTGGACCACTAACCGTAG+GGG | 0.695471 | 4.1:+54064111 | None:intergenic |
| ACACAATCCCCTCCTCATGG+AGG | 0.723061 | 4.1:+54063873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATATGATAGAATTT+TGG | + | chr4.1:54064735-54064754 | None:intergenic | 15.0% |
| !! | AAAGTCGATATGATAAAATT+TGG | + | chr4.1:54064554-54064573 | None:intergenic | 20.0% |
| !! | AAGTCGATATGATAAAATTT+GGG | + | chr4.1:54064553-54064572 | None:intergenic | 20.0% |
| !! | ATAAAAACTAATGTTGCAAA+TGG | + | chr4.1:54064864-54064883 | None:intergenic | 20.0% |
| !! | TAGAAATTTCGTATAATTGA+GGG | - | chr4.1:54064452-54064471 | MS.gene95756:intron | 20.0% |
| !! | TTAGAAATTTCGTATAATTG+AGG | - | chr4.1:54064451-54064470 | MS.gene95756:intron | 20.0% |
| ! | AGTATCTGACAATGAAATTT+AGG | - | chr4.1:54064933-54064952 | MS.gene95756:intron | 25.0% |
| ! | TAAGCGTATAAAATATGCAA+CGG | - | chr4.1:54064766-54064785 | MS.gene95756:intron | 25.0% |
| !! | AAAGTACTTATTAAAGTCCT+TGG | + | chr4.1:54065142-54065161 | None:intergenic | 25.0% |
| !!! | AGAGATGTTGATTTTTTCAT+TGG | + | chr4.1:54063893-54063912 | None:intergenic | 25.0% |
| AAATTCAGGGACTAATTTGA+TGG | - | chr4.1:54064496-54064515 | MS.gene95756:intron | 30.0% | |
| AAGCGTATAAAATATGCAAC+GGG | - | chr4.1:54064767-54064786 | MS.gene95756:intron | 30.0% | |
| ATTTATAAAATCCACGACCA+AGG | + | chr4.1:54065029-54065048 | None:intergenic | 30.0% | |
| CTATCTAACCAATATTCTTG+TGG | + | chr4.1:54065210-54065229 | None:intergenic | 30.0% | |
| TAGACTTACCACAAGAATAT+TGG | - | chr4.1:54065199-54065218 | MS.gene95756:intron | 30.0% | |
| TCGAAACATTGGAAAACAAA+GGG | - | chr4.1:54064985-54065004 | MS.gene95756:intron | 30.0% | |
| TGATCTCATAAAATAGACGA+CGG | + | chr4.1:54065344-54065363 | None:intergenic | 30.0% | |
| TGGGACTAATTTGATTGATT+TGG | + | chr4.1:54064302-54064321 | None:intergenic | 30.0% | |
| TTGGTTAGATAGAACCTTAA+TGG | - | chr4.1:54065218-54065237 | MS.gene95756:intron | 30.0% | |
| TTTATAAAATCCACGACCAA+GGG | + | chr4.1:54065028-54065047 | None:intergenic | 30.0% | |
| ! | TCGTCTATTTTATGAGATCA+TGG | - | chr4.1:54065344-54065363 | MS.gene95756:intron | 30.0% |
| ! | TTGAAGTGCCAAATGATAAT+AGG | + | chr4.1:54065820-54065839 | None:intergenic | 30.0% |
| !! | GAGAATGGAGAAATTTTTAG+CGG | - | chr4.1:54064148-54064167 | MS.gene95756:CDS | 30.0% |
| !!! | AGAATGGAGAAATTTTTAGC+GGG | - | chr4.1:54064149-54064168 | MS.gene95756:CDS | 30.0% |
| !!! | CTCTTTAGCTTTTGAACAAT+CGG | - | chr4.1:54065611-54065630 | MS.gene95756:intron | 30.0% |
| AAGGAGGAATATGTAATGCA+GGG | - | chr4.1:54064221-54064240 | MS.gene95756:intron | 35.0% | |
| AATGGGGACTGTTAATCTTA+AGG | - | chr4.1:54065089-54065108 | MS.gene95756:intron | 35.0% | |
| AGAAGCCGCAAAAACAAATA+TGG | - | chr4.1:54065556-54065575 | MS.gene95756:intron | 35.0% | |
| ATCGACGTTTGACAAATTCA+GGG | - | chr4.1:54064423-54064442 | MS.gene95756:intron | 35.0% | |
| CATCTTGCAAATCCTGAAAA+TGG | - | chr4.1:54065732-54065751 | MS.gene95756:intron | 35.0% | |
| CGATTGTTCAAAAGCTAAAG+AGG | + | chr4.1:54065613-54065632 | None:intergenic | 35.0% | |
| GATCATTTGGCACTTGAAAA+TGG | - | chr4.1:54065780-54065799 | MS.gene95756:CDS | 35.0% | |
| GGTAATGAAGAGGAAAATGT+TGG | + | chr4.1:54064087-54064106 | None:intergenic | 35.0% | |
| GTATAATTGAGGGACTAAGT+TGG | - | chr4.1:54064462-54064481 | MS.gene95756:intron | 35.0% | |
| GTCGAAACATTGGAAAACAA+AGG | - | chr4.1:54064984-54065003 | MS.gene95756:intron | 35.0% | |
| GTCTGCATCCTATTATCATT+TGG | - | chr4.1:54065809-54065828 | MS.gene95756:CDS | 35.0% | |
| GTGAAGATGATGATTCGATT+TGG | + | chr4.1:54063927-54063946 | None:intergenic | 35.0% | |
| GTGCTTCTGATGAAGATTTA+CGG | + | chr4.1:54064065-54064084 | None:intergenic | 35.0% | |
| TACTGTCTTAGTCGAAACAT+TGG | - | chr4.1:54064974-54064993 | MS.gene95756:intron | 35.0% | |
| TATAAAATATGCAACGGGTG+CGG | - | chr4.1:54064772-54064791 | MS.gene95756:intron | 35.0% | |
| TATTAAAGTCCTTGGACCAA+CGG | + | chr4.1:54065134-54065153 | None:intergenic | 35.0% | |
| TCCAAAATCATCATCATCTC+CGG | + | chr4.1:54064123-54064142 | None:intergenic | 35.0% | |
| TGAAAATGGTTCCAATGAGA+TGG | - | chr4.1:54065746-54065765 | MS.gene95756:intron | 35.0% | |
| TGCCAAATGATCATTGGTAT+TGG | + | chr4.1:54065772-54065791 | None:intergenic | 35.0% | |
| TTAGGACTAGATTGTCTTAG+TGG | - | chr4.1:54064951-54064970 | MS.gene95756:intron | 35.0% | |
| TTATGAGATCATGGTTGAGA+GGG | - | chr4.1:54065353-54065372 | MS.gene95756:intron | 35.0% | |
| TTCAAGTGCCAAATGATCAT+TGG | + | chr4.1:54065778-54065797 | None:intergenic | 35.0% | |
| TTCTGACTGAAATGTGAAGA+AGG | - | chr4.1:54064202-54064221 | MS.gene95756:intron | 35.0% | |
| TTGCCAAATTCTTGGTCATT+CGG | - | chr4.1:54065434-54065453 | MS.gene95756:intron | 35.0% | |
| TTGTCAAACGTCGATCAAAA+AGG | + | chr4.1:54064418-54064437 | None:intergenic | 35.0% | |
| TTTATGAGATCATGGTTGAG+AGG | - | chr4.1:54065352-54065371 | MS.gene95756:intron | 35.0% | |
| TTTCCATCTTATCAAGCACT+TGG | - | chr4.1:54064021-54064040 | MS.gene95756:CDS | 35.0% | |
| ! | ATCTCATTGGAACCATTTTC+AGG | + | chr4.1:54065747-54065766 | None:intergenic | 35.0% |
| ! | TTTGCGTTAATGCATTGGTA+CGG | + | chr4.1:54065863-54065882 | None:intergenic | 35.0% |
| !! | AGATGATGATGATTTTGGAG+GGG | - | chr4.1:54064124-54064143 | MS.gene95756:CDS | 35.0% |
| !! | GAGATGATGATGATTTTGGA+GGG | - | chr4.1:54064123-54064142 | MS.gene95756:CDS | 35.0% |
| !!! | GCCTTCCATATTTGTTTTTG+CGG | + | chr4.1:54065564-54065583 | None:intergenic | 35.0% |
| AGGAGGAATATGTAATGCAG+GGG | - | chr4.1:54064222-54064241 | MS.gene95756:intron | 40.0% | |
| AGGTTCAAGGATGTGTTTGA+TGG | - | chr4.1:54064179-54064198 | MS.gene95756:CDS | 40.0% | |
| ATGCATTAACGCAAACCACA+TGG | - | chr4.1:54065868-54065887 | MS.gene95756:CDS | 40.0% | |
| ATGGAAATTGCTGCTGCAAT+TGG | - | chr4.1:54065237-54065256 | MS.gene95756:intron | 40.0% | |
| ATGTAATGCAGGGGCAAAAT+GGG | - | chr4.1:54064231-54064250 | MS.gene95756:intron | 40.0% | |
| ATGTGCATTACCCTAGCAAT+GGG | - | chr4.1:54065072-54065091 | MS.gene95756:intron | 40.0% | |
| ATTAAAGTCCTTGGACCAAC+GGG | + | chr4.1:54065133-54065152 | None:intergenic | 40.0% | |
| ATTAACAGTCCCCATTGCTA+GGG | + | chr4.1:54065085-54065104 | None:intergenic | 40.0% | |
| ATTCATACTCCACCTCAACA+GGG | + | chr4.1:54065392-54065411 | None:intergenic | 40.0% | |
| ATTGGAAAACAAAGGGTCCT+TGG | - | chr4.1:54064992-54065011 | MS.gene95756:intron | 40.0% | |
| CAAATTAGTCCCAGAACATG+TGG | - | chr4.1:54064309-54064328 | MS.gene95756:intron | 40.0% | |
| CCAAGGGAAATCAATTTCCA+AGG | + | chr4.1:54065012-54065031 | None:intergenic | 40.0% | |
| CTTCTGATGAAGATTTACGG+TGG | + | chr4.1:54064062-54064081 | None:intergenic | 40.0% | |
| GAAGGAGGAATATGTAATGC+AGG | - | chr4.1:54064220-54064239 | MS.gene95756:intron | 40.0% | |
| GATCGACGTTTGACAAATTC+AGG | - | chr4.1:54064422-54064441 | MS.gene95756:intron | 40.0% | |
| GCAAACCACATGGTTAGAAT+CGG | - | chr4.1:54065878-54065897 | MS.gene95756:CDS | 40.0% | |
| GCCGCAAAAACAAATATGGA+AGG | - | chr4.1:54065560-54065579 | MS.gene95756:intron | 40.0% | |
| GGCCAATACCAATGATCATT+TGG | - | chr4.1:54065767-54065786 | MS.gene95756:intron | 40.0% | |
| GGGACTGTTAATCTTAAGGT+GGG | - | chr4.1:54065093-54065112 | MS.gene95756:intron | 40.0% | |
| TATGTAATGCAGGGGCAAAA+TGG | - | chr4.1:54064230-54064249 | MS.gene95756:intron | 40.0% | |
| TATGTGCATTACCCTAGCAA+TGG | - | chr4.1:54065071-54065090 | MS.gene95756:intron | 40.0% | |
| TCTGGAAAAAGATCCGACTA+AGG | - | chr4.1:54065479-54065498 | MS.gene95756:intron | 40.0% | |
| TGAAATTACGACACCATCTG+CGG | - | chr4.1:54065653-54065672 | MS.gene95756:intron | 40.0% | |
| TGACCGAATGACCAAGAATT+TGG | + | chr4.1:54065440-54065459 | None:intergenic | 40.0% | |
| TGACTGAAATGTGAAGAAGG+AGG | - | chr4.1:54064205-54064224 | MS.gene95756:intron | 40.0% | |
| TGCAGCAGCAATTTCCATTA+AGG | + | chr4.1:54065235-54065254 | None:intergenic | 40.0% | |
| TGGCAATGCGTACAAAATTC+AGG | + | chr4.1:54065420-54065439 | None:intergenic | 40.0% | |
| TGTACGCATTGCCAAATTCT+TGG | - | chr4.1:54065426-54065445 | MS.gene95756:intron | 40.0% | |
| TTTGCAAGATGTGTGTCAAC+TGG | + | chr4.1:54065723-54065742 | None:intergenic | 40.0% | |
| ! | AAATTGATTTCCCTTGGTCG+TGG | - | chr4.1:54065015-54065034 | MS.gene95756:intron | 40.0% |
| ! | CCTTGGAAATTGATTTCCCT+TGG | - | chr4.1:54065009-54065028 | MS.gene95756:intron | 40.0% |
| ! | GGTGTCGTAATTTCAGATGT+TGG | + | chr4.1:54065648-54065667 | None:intergenic | 40.0% |
| ! | TGTGGTTTGCGTTAATGCAT+TGG | + | chr4.1:54065868-54065887 | None:intergenic | 40.0% |
| ! | TTGCGTTAATGCATTGGTAC+GGG | + | chr4.1:54065862-54065881 | None:intergenic | 40.0% |
| ! | TTTTTGCGGCTTCTGTTGAA+TGG | + | chr4.1:54065550-54065569 | None:intergenic | 40.0% |
| !! | ATTGGTATTGGCCATCTCAT+TGG | + | chr4.1:54065760-54065779 | None:intergenic | 40.0% |
| !! | GGAGATGATGATGATTTTGG+AGG | - | chr4.1:54064122-54064141 | MS.gene95756:CDS | 40.0% |
| !! | TTCTGACGTTGGTAATGAAG+AGG | + | chr4.1:54064097-54064116 | None:intergenic | 40.0% |
| !!! | AATTTTTAGCGGGAAGGAGA+AGG | - | chr4.1:54064159-54064178 | MS.gene95756:CDS | 40.0% |
| !!! | TGGAGAAATTTTTAGCGGGA+AGG | - | chr4.1:54064153-54064172 | MS.gene95756:CDS | 40.0% |
| !!! | TTGCGTGCACATTTTTTGCA+GGG | + | chr4.1:54064909-54064928 | None:intergenic | 40.0% |
| AACCTTTGGCTATTACGTGC+GGG | - | chr4.1:54065296-54065315 | MS.gene95756:intron | 45.0% | |
| AAGAAGGAAGCCACATGTTC+TGG | + | chr4.1:54064322-54064341 | None:intergenic | 45.0% | |
| AATCGAAACTCTCCTCCATG+AGG | - | chr4.1:54065929-54065948 | MS.gene95756:CDS | 45.0% | |
| ACAAGACAACACAGCATGCA+GGG | - | chr4.1:54064351-54064370 | MS.gene95756:intron | 45.0% | |
| ACATGATGTTCAGTCTGCTC+AGG | + | chr4.1:54065681-54065700 | None:intergenic | 45.0% | |
| AGAAGGAAGCCACATGTTCT+GGG | + | chr4.1:54064321-54064340 | None:intergenic | 45.0% | |
| ATTACCAACGTCAGAATCGC+CGG | - | chr4.1:54064101-54064120 | MS.gene95756:CDS | 45.0% | |
| ATTGGTACGGGCAATCTCAT+CGG | + | chr4.1:54065850-54065869 | None:intergenic | 45.0% | |
| CACTTGTGGTTCAACTTCAC+TGG | + | chr4.1:54063982-54064001 | None:intergenic | 45.0% | |
| CATTCATACTCCACCTCAAC+AGG | + | chr4.1:54065393-54065412 | None:intergenic | 45.0% | |
| CCACCAAGTGCTTGATAAGA+TGG | + | chr4.1:54064027-54064046 | None:intergenic | 45.0% | |
| CCATCTTATCAAGCACTTGG+TGG | - | chr4.1:54064024-54064043 | MS.gene95756:CDS | 45.0% | |
| CTGTTGAGGTGGAGTATGAA+TGG | - | chr4.1:54065391-54065410 | MS.gene95756:intron | 45.0% | |
| GAACCTTTGGCTATTACGTG+CGG | - | chr4.1:54065295-54065314 | MS.gene95756:intron | 45.0% | |
| GATTAACAGTCCCCATTGCT+AGG | + | chr4.1:54065086-54065105 | None:intergenic | 45.0% | |
| GATTTCTCGCAGTCCTTAGT+CGG | + | chr4.1:54065495-54065514 | None:intergenic | 45.0% | |
| GCGACTCATAAACGAACCTT+TGG | - | chr4.1:54065282-54065301 | MS.gene95756:intron | 45.0% | |
| GGGGACTGTTAATCTTAAGG+TGG | - | chr4.1:54065092-54065111 | MS.gene95756:intron | 45.0% | |
| GTCGCGACGTCTATAATAAG+CGG | + | chr4.1:54065267-54065286 | None:intergenic | 45.0% | |
| TACAAGACAACACAGCATGC+AGG | - | chr4.1:54064350-54064369 | MS.gene95756:intron | 45.0% | |
| TCGCGACGTCTATAATAAGC+GGG | + | chr4.1:54065266-54065285 | None:intergenic | 45.0% | |
| TGAACATCATGTGTCCCCTA+CGG | - | chr4.1:54065689-54065708 | MS.gene95756:intron | 45.0% | |
| TGATGAAGATTTACGGTGGC+TGG | + | chr4.1:54064058-54064077 | None:intergenic | 45.0% | |
| TGGTTCAACTTCACTGGTGA+TGG | + | chr4.1:54063976-54063995 | None:intergenic | 45.0% | |
| TGTGCATTACCCTAGCAATG+GGG | - | chr4.1:54065073-54065092 | MS.gene95756:intron | 45.0% | |
| ! | AAGGCACGTGATAACGTTAC+TGG | - | chr4.1:54065579-54065598 | MS.gene95756:intron | 45.0% |
| ! | CAGAACCGATTCTAACCATG+TGG | + | chr4.1:54065886-54065905 | None:intergenic | 45.0% |
| ! | CGTGATAACGTTACTGGCAT+TGG | - | chr4.1:54065585-54065604 | MS.gene95756:intron | 45.0% |
| ! | TAACAGAGCACTTTGACGGA+GGG | - | chr4.1:54064391-54064410 | MS.gene95756:intron | 45.0% |
| ! | TGGCTAACAGAGCACTTTGA+CGG | - | chr4.1:54064387-54064406 | MS.gene95756:intron | 45.0% |
| !! | GCCGGAGATGATGATGATTT+TGG | - | chr4.1:54064119-54064138 | MS.gene95756:CDS | 45.0% |
| !! | TGATTTTGGAGGGGTGAGAA+TGG | - | chr4.1:54064133-54064152 | MS.gene95756:CDS | 45.0% |
| !! | TTCAACTTCACTGGTGATGG+CGG | + | chr4.1:54063973-54063992 | None:intergenic | 45.0% |
| !!! | GTTGCGTGCACATTTTTTGC+AGG | + | chr4.1:54064910-54064929 | None:intergenic | 45.0% |
| AAACTCTCCTCCATGAGGAG+GGG | - | chr4.1:54065934-54065953 | MS.gene95756:CDS | 50.0% | |
| AACTGGACCACTAACCGTAG+GGG | + | chr4.1:54065706-54065725 | None:intergenic | 50.0% | |
| AGGGGCAAAATGGGAAAAGC+AGG | - | chr4.1:54064240-54064259 | MS.gene95756:intron | 50.0% | |
| ATCTTAAGGTGGGCCTGTTG+CGG | - | chr4.1:54065103-54065122 | MS.gene95756:intron | 50.0% | |
| ATTCGGTCACGAACTGTCGT+TGG | - | chr4.1:54065451-54065470 | MS.gene95756:intron | 50.0% | |
| CAACTGGACCACTAACCGTA+GGG | + | chr4.1:54065707-54065726 | None:intergenic | 50.0% | |
| CGCGACGTCTATAATAAGCG+GGG | + | chr4.1:54065265-54065284 | None:intergenic | 50.0% | |
| GAAACTCTCCTCCATGAGGA+GGG | - | chr4.1:54065933-54065952 | MS.gene95756:CDS | 50.0% | |
| GAGATCATGGTTGAGAGGGA+AGG | - | chr4.1:54065357-54065376 | MS.gene95756:intron | 50.0% | |
| TCAACTGGACCACTAACCGT+AGG | + | chr4.1:54065708-54065727 | None:intergenic | 50.0% | |
| TGTCGCAAACACTGCACTTG+TGG | + | chr4.1:54063996-54064015 | None:intergenic | 50.0% | |
| ! | CTAACAGAGCACTTTGACGG+AGG | - | chr4.1:54064390-54064409 | MS.gene95756:intron | 50.0% |
| ! | GAACTGTCGTTGGTTGCATC+TGG | - | chr4.1:54065461-54065480 | MS.gene95756:intron | 50.0% |
| ! | GTCCCTGAATTTTCACGCGT+CGG | + | chr4.1:54064488-54064507 | None:intergenic | 50.0% |
| ACACAATCCCCTCCTCATGG+AGG | + | chr4.1:54065944-54065963 | None:intergenic | 55.0% | |
| AGCGGGAAGGAGAAGGTTCA+AGG | - | chr4.1:54064166-54064185 | MS.gene95756:CDS | 55.0% | |
| AGGCTGTGAGTTCCCTGTTG+AGG | - | chr4.1:54065377-54065396 | MS.gene95756:intron | 55.0% | |
| ATCTCCGGCGATTCTGACGT+TGG | + | chr4.1:54064108-54064127 | None:intergenic | 55.0% | |
| CACCCGCACGTAATAGCCAA+AGG | + | chr4.1:54065301-54065320 | None:intergenic | 55.0% | |
| CATGTGTCCCCTACGGTTAG+TGG | - | chr4.1:54065696-54065715 | MS.gene95756:intron | 55.0% | |
| CGAAACTCTCCTCCATGAGG+AGG | - | chr4.1:54065932-54065951 | MS.gene95756:CDS | 55.0% | |
| CGCACAAGGTGCACGACAAA+GGG | - | chr4.1:54065514-54065533 | MS.gene95756:intron | 55.0% | |
| CTGTGAGTTCCCTGTTGAGG+TGG | - | chr4.1:54065380-54065399 | MS.gene95756:intron | 55.0% | |
| GCTGTGTTGTCTTGTACGCG+TGG | + | chr4.1:54064346-54064365 | None:intergenic | 55.0% | |
| GGACTGCGAGAAATCGCACA+AGG | - | chr4.1:54065500-54065519 | MS.gene95756:intron | 55.0% | |
| GGCCGACGCGTGAAAATTCA+GGG | - | chr4.1:54064483-54064502 | MS.gene95756:intron | 55.0% | |
| GTCTTGTACGCGTGGCAAGA+AGG | + | chr4.1:54064338-54064357 | None:intergenic | 55.0% | |
| TCCATCCATGCGCATGAGTG+AGG | + | chr4.1:54065170-54065189 | None:intergenic | 55.0% | |
| TCGCACAAGGTGCACGACAA+AGG | - | chr4.1:54065513-54065532 | MS.gene95756:intron | 55.0% | |
| TGGCCGACGCGTGAAAATTC+AGG | - | chr4.1:54064482-54064501 | MS.gene95756:intron | 55.0% | |
| TGGCTATTACGTGCGGGTGT+TGG | - | chr4.1:54065302-54065321 | MS.gene95756:intron | 55.0% | |
| !! | CTATTACGTGCGGGTGTTGG+TGG | - | chr4.1:54065305-54065324 | MS.gene95756:intron | 55.0% |
| !! | GTGCGGGTGTTGGTGGATAT+AGG | - | chr4.1:54065312-54065331 | MS.gene95756:intron | 55.0% |
| GCCTCACTCATGCGCATGGA+TGG | - | chr4.1:54065166-54065185 | MS.gene95756:intron | 60.0% | |
| TGCAGGGCGACATGTCAGCA+TGG | - | chr4.1:54064367-54064386 | MS.gene95756:intron | 60.0% | |
| !! | GGTGATGGCGGCAACTGCAA+CGG | + | chr4.1:54063961-54063980 | None:intergenic | 60.0% |
| ACCAACGGGAGAGCCGCAAC+AGG | + | chr4.1:54065119-54065138 | None:intergenic | 65.0% | |
| CAGCGCCTCACTCATGCGCA+TGG | - | chr4.1:54065162-54065181 | MS.gene95756:intron | 65.0% | |
| ! | GTCTGCTCAGGTGCCGCAGA+TGG | + | chr4.1:54065669-54065688 | None:intergenic | 65.0% |
| GCCTGTTGCGGCTCTCCCGT+TGG | - | chr4.1:54065115-54065134 | MS.gene95756:intron | 70.0% | |
| GCGGCTCTCCCGTTGGTCCA+AGG | - | chr4.1:54065122-54065141 | MS.gene95756:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 54063871 | 54065965 | 54063871 | ID=MS.gene95756 |
| chr4.1 | mRNA | 54063871 | 54065965 | 54063871 | ID=MS.gene95756.t1;Parent=MS.gene95756 |
| chr4.1 | exon | 54065773 | 54065965 | 54065773 | ID=MS.gene95756.t1.exon1;Parent=MS.gene95756.t1 |
| chr4.1 | CDS | 54065773 | 54065965 | 54065773 | ID=cds.MS.gene95756.t1;Parent=MS.gene95756.t1 |
| chr4.1 | exon | 54063871 | 54064217 | 54063871 | ID=MS.gene95756.t1.exon2;Parent=MS.gene95756.t1 |
| chr4.1 | CDS | 54063871 | 54064217 | 54063871 | ID=cds.MS.gene95756.t1;Parent=MS.gene95756.t1 |
| Gene Sequence |
| Protein sequence |
