Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95759.t1 | XP_013442871.1 | 83.8 | 247 | 25 | 4 | 1 | 240 | 1 | 239 | 1.80E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95759.t1 | Q8GZA8 | 67.4 | 233 | 65 | 3 | 13 | 240 | 11 | 237 | 7.8e-89 | 328.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95759.t1 | A0A072TI70 | 83.8 | 247 | 25 | 4 | 1 | 240 | 1 | 239 | 1.3e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene95759.t1 | TF | ULT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95759.t1 | MTR_0072s0040 | 88.664 | 247 | 13 | 4 | 1 | 240 | 1 | 239 | 3.32e-154 | 428 |
| MS.gene95759.t1 | MTR_2g090080 | 70.464 | 237 | 69 | 1 | 4 | 240 | 1 | 236 | 3.04e-119 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95759.t1 | AT4G28190 | 62.548 | 259 | 65 | 3 | 13 | 240 | 11 | 268 | 1.96e-110 | 318 |
| MS.gene95759.t1 | AT4G28190 | 67.382 | 233 | 65 | 3 | 13 | 240 | 11 | 237 | 1.62e-109 | 315 |
| MS.gene95759.t1 | AT2G20825 | 64.000 | 225 | 74 | 2 | 16 | 240 | 10 | 227 | 2.01e-102 | 296 |
Find 51 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGACCAACCCGGCCATTT+TGG | 0.182520 | 4.1:-53835529 | None:intergenic |
| AACATCTGGGTTATAATTAA+TGG | 0.244792 | 4.1:+53835425 | MS.gene95759:CDS |
| GCACTTCATGTGTGTGCTTT+GGG | 0.312256 | 4.1:+53837494 | MS.gene95759:CDS |
| TGCACTTCATGTGTGTGCTT+TGG | 0.329850 | 4.1:+53837493 | MS.gene95759:CDS |
| AATGGGTTGGAGAAGGGAAA+TGG | 0.345803 | 4.1:+53833432 | MS.gene95759:CDS |
| CTGCTGTGTCAGATGCAAAT+TGG | 0.357390 | 4.1:+53835639 | MS.gene95759:CDS |
| ATGAGTTTGTTCGCTGTACT+AGG | 0.392965 | 4.1:+53835555 | MS.gene95759:CDS |
| AATAAAACGTACTTCTCATA+TGG | 0.401847 | 4.1:-53835677 | None:intergenic |
| GGCTCTCAGAGATCCCAAAA+TGG | 0.420579 | 4.1:+53835515 | MS.gene95759:CDS |
| ATGGGTTGGAGAAGGGAAAT+GGG | 0.422445 | 4.1:+53833433 | MS.gene95759:CDS |
| GGTTATAATTAATGGTGATA+AGG | 0.431324 | 4.1:+53835433 | MS.gene95759:CDS |
| GAAGAGAGACAGCAAGGAAA+TGG | 0.432232 | 4.1:+53835396 | MS.gene95759:CDS |
| GGAAATGGAAGAATAACATC+TGG | 0.435191 | 4.1:+53835411 | MS.gene95759:CDS |
| CAAGTGGCGAAAGCTGCTAA+TGG | 0.441867 | 4.1:+53835494 | MS.gene95759:CDS |
| TTTATGGAGAAAATGGAGAA+TGG | 0.445958 | 4.1:+53833414 | None:intergenic |
| TTATGGAGAAAATGGAGAAT+GGG | 0.453953 | 4.1:+53833415 | None:intergenic |
| AAGAGCTGAGAGAAATGAGT+GGG | 0.458242 | 4.1:+53833475 | MS.gene95759:CDS |
| TAATGGTGATAAGGTTCCAT+TGG | 0.460779 | 4.1:+53835442 | MS.gene95759:CDS |
| ATGGAGAATGGGTTGGAGAA+GGG | 0.474047 | 4.1:+53833426 | MS.gene95759:CDS |
| CTCAGAGATCCCAAAATGGC+CGG | 0.484048 | 4.1:+53835519 | MS.gene95759:CDS |
| AATGGTGATAAGGTTCCATT+GGG | 0.489767 | 4.1:+53835443 | MS.gene95759:CDS |
| AATGGAGAATGGGTTGGAGA+AGG | 0.494806 | 4.1:+53833425 | MS.gene95759:CDS |
| ACAGTATCTGTTGATGCAAA+AGG | 0.500477 | 4.1:+53834660 | MS.gene95759:CDS |
| TGGTAAAGTCAGTACAAGTC+TGG | 0.500731 | 4.1:-53837549 | None:intergenic |
| AACCTTTGCATGTTGGTGAT+CGG | 0.518571 | 4.1:-53837471 | None:intergenic |
| GGAGAAAATGGAGAATGGGT+TGG | 0.523981 | 4.1:+53833419 | MS.gene95759:CDS |
| ATTTCGTCTGAGATCTAAAG+AGG | 0.537276 | 4.1:+53835595 | MS.gene95759:CDS |
| AGATCCCAAAATGGCCGGGT+TGG | 0.546651 | 4.1:+53835524 | MS.gene95759:CDS |
| ATCTGTTGATGCAAAAGGAC+CGG | 0.547162 | 4.1:+53834665 | MS.gene95759:CDS |
| GAGTGTTTCTCAAATGCAGC+AGG | 0.552189 | 4.1:-53835371 | None:intergenic |
| CACATTGCAGGATGGTGTCA+AGG | 0.566118 | 4.1:+53834753 | MS.gene95759:intron |
| TCAGAGATCCCAAAATGGCC+GGG | 0.567774 | 4.1:+53835520 | MS.gene95759:CDS |
| CATCTGACACAGCAGCATCA+TGG | 0.577346 | 4.1:-53835631 | None:intergenic |
| GGCCGATCACCAACATGCAA+AGG | 0.580638 | 4.1:+53837469 | MS.gene95759:CDS |
| CGAAGAGTTTACAGAGGATG+CGG | 0.588649 | 4.1:+53837448 | MS.gene95759:CDS |
| GCTGCATTTGAGAAACACTC+TGG | 0.595645 | 4.1:+53835374 | MS.gene95759:CDS |
| GGGTGTACTAGTCATAGATA+TGG | 0.599115 | 4.1:+53833534 | MS.gene95759:CDS |
| ACTCATCGCGGTGACCAACC+CGG | 0.606791 | 4.1:-53835538 | None:intergenic |
| GAAATGGAAGAATAACATCT+GGG | 0.610791 | 4.1:+53835412 | MS.gene95759:CDS |
| CAGCAGCATCATGGTGAATG+CGG | 0.613158 | 4.1:-53835622 | None:intergenic |
| AGAGCTGAGAGAAATGAGTG+GGG | 0.614369 | 4.1:+53833476 | MS.gene95759:CDS |
| CATAGATATGGTGATGCTGT+TGG | 0.619627 | 4.1:+53833546 | MS.gene95759:CDS |
| GCTCAAATACTACAATCAAG+TGG | 0.629351 | 4.1:+53835478 | MS.gene95759:CDS |
| GAAGAGCTGAGAGAAATGAG+TGG | 0.646981 | 4.1:+53833474 | MS.gene95759:CDS |
| GAAGTGCAACCTTTGCATGT+TGG | 0.653812 | 4.1:-53837478 | None:intergenic |
| GGAAGTCGAAGAGTTTACAG+AGG | 0.661639 | 4.1:+53837442 | MS.gene95759:CDS |
| ACTCTGGAAGAGAGACAGCA+AGG | 0.669740 | 4.1:+53835390 | MS.gene95759:CDS |
| GAATATGTTGAAGTCACGTG+TGG | 0.677819 | 4.1:+53833513 | MS.gene95759:CDS |
| TGTGATGATGAAGAAGAGCG+AGG | 0.697305 | 4.1:+53837421 | MS.gene95759:CDS |
| AATATGTTGAAGTCACGTGT+GGG | 0.722833 | 4.1:+53833514 | MS.gene95759:CDS |
| TACAGCGAACAAACTCATCG+CGG | 0.760016 | 4.1:-53835550 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAAATCATAAATTAT+TGG | - | chr4.1:53835129-53835148 | None:intergenic | 10.0% |
| !!! | AATAATTTATGATTTTGTTT+TGG | + | chr4.1:53835128-53835147 | MS.gene95759:intron | 10.0% |
| !!! | CTTCTTTTATTTATATTTTT+AGG | - | chr4.1:53834958-53834977 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTACCTAATTTA+TGG | + | chr4.1:53836983-53837002 | MS.gene95759:intron | 10.0% |
| !!! | TTTTTCAAATTAAATTATGA+AGG | - | chr4.1:53834876-53834895 | None:intergenic | 10.0% |
| !! | AAATGTAGAAGATTTATAAT+TGG | + | chr4.1:53834046-53834065 | MS.gene95759:intron | 15.0% |
| !! | TAAATAATTAGTCATATAGA+CGG | - | chr4.1:53835046-53835065 | None:intergenic | 15.0% |
| !!! | TTAGTAATATTAAGTTTTTC+AGG | + | chr4.1:53837392-53837411 | MS.gene95759:intron | 15.0% |
| !!! | TTTTATAATAAACCATAAGT+TGG | - | chr4.1:53837093-53837112 | None:intergenic | 15.0% |
| !!! | TTTTATTGGTAATTTGTTAT+TGG | + | chr4.1:53836518-53836537 | MS.gene95759:intron | 15.0% |
| !! | AACATCATATGCAAAAATTA+AGG | - | chr4.1:53835329-53835348 | None:intergenic | 20.0% |
| !! | AATTTGAAAAATCAACAACT+TGG | + | chr4.1:53834885-53834904 | MS.gene95759:intron | 20.0% |
| !! | ATAAGACCAAATTTATGAAT+TGG | - | chr4.1:53836155-53836174 | None:intergenic | 20.0% |
| !! | ATATAAGTATTTATGCATGT+CGG | - | chr4.1:53833752-53833771 | None:intergenic | 20.0% |
| !! | ATTTGAAAAATCAACAACTT+GGG | + | chr4.1:53834886-53834905 | MS.gene95759:intron | 20.0% |
| !! | CAAATTAAATTATGAAGGTA+TGG | - | chr4.1:53834871-53834890 | None:intergenic | 20.0% |
| !! | CACAAAAAAAATAAAAGACT+CGG | + | chr4.1:53837198-53837217 | MS.gene95759:intron | 20.0% |
| !! | GTATAGTAATTAATATCCTA+AGG | + | chr4.1:53834237-53834256 | MS.gene95759:intron | 20.0% |
| !! | GTCTATATGACTAATTATTT+AGG | + | chr4.1:53835045-53835064 | MS.gene95759:intron | 20.0% |
| !! | TGTATGTGTTAATATTTCAT+AGG | + | chr4.1:53833844-53833863 | MS.gene95759:intron | 20.0% |
| !! | TTATAGATTAACAATACCTT+AGG | - | chr4.1:53834256-53834275 | None:intergenic | 20.0% |
| !! | TTGTGAGATTAAATTCAATA+TGG | + | chr4.1:53834081-53834100 | MS.gene95759:intron | 20.0% |
| !!! | AATCTTTTGCATAAAATTTC+AGG | + | chr4.1:53836484-53836503 | MS.gene95759:intron | 20.0% |
| !!! | AGGGATGAAATATATTTTAT+TGG | + | chr4.1:53836504-53836523 | MS.gene95759:intron | 20.0% |
| !!! | ATAATTGATAGTCTTAATCT+AGG | + | chr4.1:53836271-53836290 | MS.gene95759:intron | 20.0% |
| !!! | ATCTTTTGCATAAAATTTCA+GGG | + | chr4.1:53836485-53836504 | MS.gene95759:intron | 20.0% |
| !!! | CATATCATATTACTGTTTTA+CGG | + | chr4.1:53836366-53836385 | MS.gene95759:intron | 20.0% |
| !!! | CATTTTTGTGGTAATAATTA+AGG | - | chr4.1:53837353-53837372 | None:intergenic | 20.0% |
| !!! | TGTAAAATATGTCATTTTTG+TGG | - | chr4.1:53837365-53837384 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAAAAAATCGTGT+AGG | + | chr4.1:53836205-53836224 | MS.gene95759:intron | 20.0% |
| ! | AAAATAAAAGACTCGGAATT+TGG | + | chr4.1:53837205-53837224 | MS.gene95759:intron | 25.0% |
| ! | AAATAAAAGACTCGGAATTT+GGG | + | chr4.1:53837206-53837225 | MS.gene95759:intron | 25.0% |
| ! | AACATCTGGGTTATAATTAA+TGG | + | chr4.1:53835425-53835444 | MS.gene95759:CDS | 25.0% |
| ! | AAGTAAATAAAGATGCCATT+TGG | - | chr4.1:53835814-53835833 | None:intergenic | 25.0% |
| ! | AATAAAACGTACTTCTCATA+TGG | - | chr4.1:53835680-53835699 | None:intergenic | 25.0% |
| ! | AATTAAGTGGAATGAATATG+AGG | - | chr4.1:53834364-53834383 | None:intergenic | 25.0% |
| ! | AGAACTAATAGCCATAAATT+AGG | - | chr4.1:53836997-53837016 | None:intergenic | 25.0% |
| ! | AGCAGTTATTTATCATAGTT+CGG | - | chr4.1:53836463-53836482 | None:intergenic | 25.0% |
| ! | CAAAGGATATAAGCATTAAT+TGG | - | chr4.1:53836763-53836782 | None:intergenic | 25.0% |
| ! | CAATTAATGCTTATATCCTT+TGG | + | chr4.1:53836761-53836780 | MS.gene95759:intron | 25.0% |
| ! | CTGAAAATGAGTTTATAAGT+GGG | - | chr4.1:53836066-53836085 | None:intergenic | 25.0% |
| ! | GAAATTATGTATCATTGATG+TGG | + | chr4.1:53836393-53836412 | MS.gene95759:intron | 25.0% |
| ! | GGTTATAATTAATGGTGATA+AGG | + | chr4.1:53835433-53835452 | MS.gene95759:CDS | 25.0% |
| ! | GTTAAGCCAATTCATAAATT+TGG | + | chr4.1:53836146-53836165 | MS.gene95759:intron | 25.0% |
| ! | TAAATGTCATGTTTATATGG+CGG | + | chr4.1:53834542-53834561 | MS.gene95759:intron | 25.0% |
| ! | TAAGCATTAATTGGTGTATT+AGG | - | chr4.1:53836754-53836773 | None:intergenic | 25.0% |
| ! | TAATAAAACAACACACATAG+TGG | - | chr4.1:53834607-53834626 | None:intergenic | 25.0% |
| ! | TCGTAAATGTCATGTTTATA+TGG | + | chr4.1:53834539-53834558 | MS.gene95759:intron | 25.0% |
| ! | TCTGAAAATGAGTTTATAAG+TGG | - | chr4.1:53836067-53836086 | None:intergenic | 25.0% |
| ! | TGAGAATTTGTGATTTAAAC+TGG | + | chr4.1:53834704-53834723 | MS.gene95759:intron | 25.0% |
| ! | TGATATATATGAGTAGAACT+TGG | + | chr4.1:53834636-53834655 | MS.gene95759:intron | 25.0% |
| ! | TGCATTCACAAATAATTTGA+AGG | - | chr4.1:53833599-53833618 | None:intergenic | 25.0% |
| ! | TTCTTAAAGTTACTAAGTCT+TGG | + | chr4.1:53836555-53836574 | MS.gene95759:intron | 25.0% |
| !! | AAAGAACATACATAACTTGT+AGG | - | chr4.1:53834279-53834298 | None:intergenic | 25.0% |
| !! | ATGTATGTTCTTTTCTTTGA+TGG | + | chr4.1:53834286-53834305 | MS.gene95759:intron | 25.0% |
| !! | ATTTATGAATTGGCTTAACT+TGG | - | chr4.1:53836145-53836164 | None:intergenic | 25.0% |
| !! | TTTTCATTTTCAAATCGTGT+AGG | + | chr4.1:53836176-53836195 | MS.gene95759:intron | 25.0% |
| !!! | CGAGTCTTTTATTTTTTTTG+TGG | - | chr4.1:53837200-53837219 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTTTGTGGTGTC+CGG | - | chr4.1:53837193-53837212 | None:intergenic | 25.0% |
| !!! | TTTTTTATCAGCTTTGTGTT+TGG | + | chr4.1:53833918-53833937 | MS.gene95759:intron | 25.0% |
| AAAATGAGTTTATAAGTGGG+AGG | - | chr4.1:53836063-53836082 | None:intergenic | 30.0% | |
| AAAATGTTCTTGAGCAAGAT+TGG | - | chr4.1:53836661-53836680 | None:intergenic | 30.0% | |
| AACATAATGTAACCGTAGTA+AGG | + | chr4.1:53834162-53834181 | MS.gene95759:intron | 30.0% | |
| AGCAGTTGAACAGAAAATAA+AGG | - | chr4.1:53837058-53837077 | None:intergenic | 30.0% | |
| CATAGTGACTGAAAATTAAG+TGG | - | chr4.1:53834377-53834396 | None:intergenic | 30.0% | |
| GAAATGGAAGAATAACATCT+GGG | + | chr4.1:53835412-53835431 | MS.gene95759:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | chr4.1:53837152-53837171 | MS.gene95759:intron | 30.0% | |
| GTACGGTTTATGTTCTATAT+TGG | + | chr4.1:53836583-53836602 | MS.gene95759:intron | 30.0% | |
| TAGTACAAGTGCAATTATGT+AGG | - | chr4.1:53837270-53837289 | None:intergenic | 30.0% | |
| TCATTCATATATCCAGTGTT+AGG | + | chr4.1:53835163-53835182 | MS.gene95759:intron | 30.0% | |
| TTAACAATGGAAATAGTGCA+CGG | + | chr4.1:53836112-53836131 | MS.gene95759:intron | 30.0% | |
| TTGTGTACACTTCTGATTAA+AGG | + | chr4.1:53833714-53833733 | MS.gene95759:intron | 30.0% | |
| ! | AAATCCATTCAAGTGCTTTT+AGG | - | chr4.1:53836730-53836749 | None:intergenic | 30.0% |
| ! | GCAAGTTATGCTTTTAATGT+TGG | + | chr4.1:53835735-53835754 | MS.gene95759:intron | 30.0% |
| ! | TGACTTTGAAGAAATATCCT+AGG | - | chr4.1:53834189-53834208 | None:intergenic | 30.0% |
| ! | TTAAATTATGAAGGTATGGC+AGG | - | chr4.1:53834867-53834886 | None:intergenic | 30.0% |
| !! | ATTTCTAGAACTTAAGCTGT+TGG | + | chr4.1:53836836-53836855 | MS.gene95759:intron | 30.0% |
| !! | CTTAAGTTCTAGAAATAAGC+TGG | - | chr4.1:53836832-53836851 | None:intergenic | 30.0% |
| !! | GGCTATTAGTTCTATAGATA+TGG | + | chr4.1:53837004-53837023 | MS.gene95759:intron | 30.0% |
| !! | TAACTGTTCTGCTTTTACAT+TGG | + | chr4.1:53836915-53836934 | MS.gene95759:intron | 30.0% |
| !! | TCATAGGTTGATAGTGTATA+TGG | + | chr4.1:53833860-53833879 | MS.gene95759:intron | 30.0% |
| !!! | ATGTTTATATGGCGGATTTT+TGG | + | chr4.1:53834550-53834569 | MS.gene95759:intron | 30.0% |
| !!! | TTATTTTTTTTGTGGTGTCC+GGG | - | chr4.1:53837192-53837211 | None:intergenic | 30.0% |
| AAATTCTCATTTGTCAGCAG+AGG | - | chr4.1:53834693-53834712 | None:intergenic | 35.0% | |
| AACATGACATTTACGACGTA+TGG | - | chr4.1:53834535-53834554 | None:intergenic | 35.0% | |
| AATATCCTAGGACCTTACTA+CGG | - | chr4.1:53834177-53834196 | None:intergenic | 35.0% | |
| AATATGTTGAAGTCACGTGT+GGG | + | chr4.1:53833514-53833533 | MS.gene95759:CDS | 35.0% | |
| AATGGTGATAAGGTTCCATT+GGG | + | chr4.1:53835443-53835462 | MS.gene95759:CDS | 35.0% | |
| ACAGTATCTGTTGATGCAAA+AGG | + | chr4.1:53834660-53834679 | MS.gene95759:CDS | 35.0% | |
| ACCATACATTATCCAATGTG+AGG | + | chr4.1:53836086-53836105 | MS.gene95759:intron | 35.0% | |
| ACTAAGTCTTGGTTAGAGTA+CGG | + | chr4.1:53836566-53836585 | MS.gene95759:intron | 35.0% | |
| ACTTATTAAGCTCCTAACAC+TGG | - | chr4.1:53835178-53835197 | None:intergenic | 35.0% | |
| ATGAAAGTGAAGCTAACAAG+TGG | - | chr4.1:53835079-53835098 | None:intergenic | 35.0% | |
| ATTATTTGTGAATGCACTCC+TGG | + | chr4.1:53833603-53833622 | MS.gene95759:intron | 35.0% | |
| ATTTGTCTCAATGAACTCCT+TGG | + | chr4.1:53833979-53833998 | MS.gene95759:intron | 35.0% | |
| CATTAGCATGATCAGAAAGA+GGG | - | chr4.1:53834010-53834029 | None:intergenic | 35.0% | |
| GATATATGCTTCAAGTCCAA+AGG | - | chr4.1:53836780-53836799 | None:intergenic | 35.0% | |
| GCAATTATGTAGGTTATGTC+AGG | - | chr4.1:53837260-53837279 | None:intergenic | 35.0% | |
| GCTCAAATACTACAATCAAG+TGG | + | chr4.1:53835478-53835497 | MS.gene95759:CDS | 35.0% | |
| GGAAATGGAAGAATAACATC+TGG | + | chr4.1:53835411-53835430 | MS.gene95759:CDS | 35.0% | |
| GGAAGATATCTAATTCCTTG+AGG | - | chr4.1:53837239-53837258 | None:intergenic | 35.0% | |
| GGACGATATAATAGATGTTG+CGG | - | chr4.1:53834502-53834521 | None:intergenic | 35.0% | |
| GGGAAGAGATCATATGATTA+AGG | + | chr4.1:53834906-53834925 | MS.gene95759:intron | 35.0% | |
| TAATGGTGATAAGGTTCCAT+TGG | + | chr4.1:53835442-53835461 | MS.gene95759:CDS | 35.0% | |
| TAGCACTCTGCAAATTAGTA+AGG | - | chr4.1:53836246-53836265 | None:intergenic | 35.0% | |
| TCATGTGCTTTATGTATCCA+CGG | + | chr4.1:53835220-53835239 | MS.gene95759:intron | 35.0% | |
| TCATTAGCATGATCAGAAAG+AGG | - | chr4.1:53834011-53834030 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | + | chr4.1:53837157-53837176 | MS.gene95759:intron | 35.0% | |
| TTTAAACTGGCAGTGTACTT+CGG | + | chr4.1:53834717-53834736 | MS.gene95759:intron | 35.0% | |
| TTTCTGTTCAACTGCTGAAT+GGG | + | chr4.1:53837062-53837081 | MS.gene95759:intron | 35.0% | |
| ! | AACGAGAGTACAATATGGAA+TGG | - | chr4.1:53836802-53836821 | None:intergenic | 35.0% |
| ! | AGACTTAGGGTTTTTCTTAG+TGG | + | chr4.1:53833570-53833589 | MS.gene95759:intron | 35.0% |
| ! | ATTTCGTCTGAGATCTAAAG+AGG | + | chr4.1:53835595-53835614 | MS.gene95759:CDS | 35.0% |
| ! | CATATTACTGTTTTACGGCT+GGG | + | chr4.1:53836371-53836390 | MS.gene95759:intron | 35.0% |
| ! | TCATATTACTGTTTTACGGC+TGG | + | chr4.1:53836370-53836389 | MS.gene95759:intron | 35.0% |
| ! | TCATTGATGTGGTCTCTTTT+CGG | + | chr4.1:53836404-53836423 | MS.gene95759:intron | 35.0% |
| ! | TGAACCTTGTTTGTACCAAA+TGG | + | chr4.1:53835796-53835815 | MS.gene95759:intron | 35.0% |
| ! | TGAGAAACGAGAGTACAATA+TGG | - | chr4.1:53836807-53836826 | None:intergenic | 35.0% |
| ! | TTTTCTGTTCAACTGCTGAA+TGG | + | chr4.1:53837061-53837080 | MS.gene95759:intron | 35.0% |
| !! | AATTTTGTTTGCCACATTGC+AGG | + | chr4.1:53834741-53834760 | MS.gene95759:intron | 35.0% |
| !! | CTATCCTAAAAGCACTTGAA+TGG | + | chr4.1:53836723-53836742 | MS.gene95759:intron | 35.0% |
| !! | GGTTGATAGTGTATATGGTT+TGG | + | chr4.1:53833865-53833884 | MS.gene95759:intron | 35.0% |
| !! | TAGTGTATATGGTTTGGTGA+AGG | + | chr4.1:53833871-53833890 | MS.gene95759:intron | 35.0% |
| !!! | TATTTTTTTTGTGGTGTCCG+GGG | - | chr4.1:53837191-53837210 | None:intergenic | 35.0% |
| !!! | TCAAGTGCTTTTAGGATAGT+TGG | - | chr4.1:53836722-53836741 | None:intergenic | 35.0% |
| AAATGATTTCTTGCTCCCTC+TGG | + | chr4.1:53834985-53835004 | MS.gene95759:intron | 40.0% | |
| AACAAGGTTCATTCGAAGCA+CGG | - | chr4.1:53835787-53835806 | None:intergenic | 40.0% | |
| AAGAGCTGAGAGAAATGAGT+GGG | + | chr4.1:53833475-53833494 | MS.gene95759:CDS | 40.0% | |
| AATGATTTCTTGCTCCCTCT+GGG | + | chr4.1:53834986-53835005 | MS.gene95759:intron | 40.0% | |
| AATTTGGGCACATTTCCTCA+AGG | + | chr4.1:53837221-53837240 | MS.gene95759:intron | 40.0% | |
| ACACACAGAGAATCACTAGA+GGG | - | chr4.1:53836686-53836705 | None:intergenic | 40.0% | |
| ACGACGTATGGCAGAAAAAT+TGG | - | chr4.1:53834523-53834542 | None:intergenic | 40.0% | |
| ATAATAGATGTTGCGGCTTC+TGG | - | chr4.1:53834495-53834514 | None:intergenic | 40.0% | |
| ATCTGTTGATGCAAAAGGAC+CGG | + | chr4.1:53834665-53834684 | MS.gene95759:CDS | 40.0% | |
| CAATGAAAGTGATGAGAGAG+AGG | - | chr4.1:53833662-53833681 | None:intergenic | 40.0% | |
| CAATGTGAGGCTCTTAACAA+TGG | + | chr4.1:53836099-53836118 | MS.gene95759:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr4.1:53837159-53837178 | MS.gene95759:intron | 40.0% | |
| CATTGTTAAGAGCCTCACAT+TGG | - | chr4.1:53836101-53836120 | None:intergenic | 40.0% | |
| CCATACAAAACCAGCTTGTA+AGG | + | chr4.1:53836028-53836047 | MS.gene95759:intron | 40.0% | |
| GAATATGTTGAAGTCACGTG+TGG | + | chr4.1:53833513-53833532 | MS.gene95759:CDS | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | chr4.1:53837158-53837177 | MS.gene95759:intron | 40.0% | |
| GCCTCACATTGGATAATGTA+TGG | - | chr4.1:53836090-53836109 | None:intergenic | 40.0% | |
| GGCAGTTGCAATCTGAAAAA+CGG | - | chr4.1:53837531-53837550 | None:intergenic | 40.0% | |
| GGGTGTACTAGTCATAGATA+TGG | + | chr4.1:53833534-53833553 | MS.gene95759:CDS | 40.0% | |
| TACACACAGAGAATCACTAG+AGG | - | chr4.1:53836687-53836706 | None:intergenic | 40.0% | |
| TGGAATAGTTTAACCAGACC+TGG | + | chr4.1:53836603-53836622 | MS.gene95759:intron | 40.0% | |
| TGGATCAGAGTTATCAACGA+TGG | - | chr4.1:53834587-53834606 | None:intergenic | 40.0% | |
| TGGTAAAGTCAGTACAAGTC+TGG | - | chr4.1:53837552-53837571 | None:intergenic | 40.0% | |
| ! | ATGAGTTTGTTCGCTGTACT+AGG | + | chr4.1:53835555-53835574 | MS.gene95759:CDS | 40.0% |
| ! | CATAGATATGGTGATGCTGT+TGG | + | chr4.1:53833546-53833565 | MS.gene95759:CDS | 40.0% |
| ! | GATGCCATTTGGTACAAACA+AGG | - | chr4.1:53835803-53835822 | None:intergenic | 40.0% |
| ! | TGAGCTTAACTCAGTTGGTA+AGG | + | chr4.1:53837130-53837149 | MS.gene95759:intron | 40.0% |
| ! | TGATGCTGTTGGTAGACTTA+GGG | + | chr4.1:53833557-53833576 | MS.gene95759:intron | 40.0% |
| ! | TTGAGTTTTTCTTTTCGCCG+TGG | - | chr4.1:53835240-53835259 | None:intergenic | 40.0% |
| !! | AACCTTTGCATGTTGGTGAT+CGG | - | chr4.1:53837474-53837493 | None:intergenic | 40.0% |
| !! | GAATTTTGACAACACTGCAG+TGG | - | chr4.1:53834435-53834454 | None:intergenic | 40.0% |
| !!! | CCTTACAAGCTGGTTTTGTA+TGG | - | chr4.1:53836031-53836050 | None:intergenic | 40.0% |
| !!! | CTGGTTTTGTATGGTGAGTT+AGG | - | chr4.1:53836022-53836041 | None:intergenic | 40.0% |
| ACAACACTGCAGTGGATACA+TGG | - | chr4.1:53834427-53834446 | None:intergenic | 45.0% | |
| ACCAACTGAGTTAAGCTCAC+AGG | - | chr4.1:53837129-53837148 | None:intergenic | 45.0% | |
| AGAGCTGAGAGAAATGAGTG+GGG | + | chr4.1:53833476-53833495 | MS.gene95759:CDS | 45.0% | |
| CAAACCCAGAATTCAGTACC+AGG | - | chr4.1:53836624-53836643 | None:intergenic | 45.0% | |
| CCAACTGAGTTAAGCTCACA+GGG | - | chr4.1:53837128-53837147 | None:intergenic | 45.0% | |
| CGAAGAGTTTACAGAGGATG+CGG | + | chr4.1:53837448-53837467 | MS.gene95759:CDS | 45.0% | |
| CTCAAGAATACACTCCCAGA+GGG | - | chr4.1:53835003-53835022 | None:intergenic | 45.0% | |
| CTGCTGTGTCAGATGCAAAT+TGG | + | chr4.1:53835639-53835658 | MS.gene95759:CDS | 45.0% | |
| GAAGAGAGACAGCAAGGAAA+TGG | + | chr4.1:53835396-53835415 | MS.gene95759:CDS | 45.0% | |
| GAAGAGCTGAGAGAAATGAG+TGG | + | chr4.1:53833474-53833493 | MS.gene95759:CDS | 45.0% | |
| GAAGTGCAACCTTTGCATGT+TGG | - | chr4.1:53837481-53837500 | None:intergenic | 45.0% | |
| GAATGGGAAGGACCAACTTA+TGG | + | chr4.1:53837078-53837097 | MS.gene95759:intron | 45.0% | |
| GAGTGTTTCTCAAATGCAGC+AGG | - | chr4.1:53835374-53835393 | None:intergenic | 45.0% | |
| GCACTTCATGTGTGTGCTTT+GGG | + | chr4.1:53837494-53837513 | MS.gene95759:CDS | 45.0% | |
| GCTGCATTTGAGAAACACTC+TGG | + | chr4.1:53835374-53835393 | MS.gene95759:CDS | 45.0% | |
| GGAAGTCGAAGAGTTTACAG+AGG | + | chr4.1:53837442-53837461 | MS.gene95759:CDS | 45.0% | |
| GGAGAAAATGGAGAATGGGT+TGG | + | chr4.1:53833419-53833438 | MS.gene95759:CDS | 45.0% | |
| GTGTTGTCAAAATTCCGCCA+TGG | + | chr4.1:53834440-53834459 | MS.gene95759:intron | 45.0% | |
| TACAGCGAACAAACTCATCG+CGG | - | chr4.1:53835553-53835572 | None:intergenic | 45.0% | |
| TCAGAAAGAGGGTCAAACCA+AGG | - | chr4.1:53833999-53834018 | None:intergenic | 45.0% | |
| TCAGAGTTATCAACGATGGC+TGG | - | chr4.1:53834583-53834602 | None:intergenic | 45.0% | |
| TGCACTTCATGTGTGTGCTT+TGG | + | chr4.1:53837493-53837512 | MS.gene95759:CDS | 45.0% | |
| TGTAACCGTAGTAAGGTCCT+AGG | + | chr4.1:53834169-53834188 | MS.gene95759:intron | 45.0% | |
| TGTTCAACTGCTGAATGGGA+AGG | + | chr4.1:53837066-53837085 | MS.gene95759:intron | 45.0% | |
| TTGTTTGCCACATTGCAGGA+TGG | + | chr4.1:53834745-53834764 | MS.gene95759:intron | 45.0% | |
| ! | AGCAGCACTGTTTTACCCAA+TGG | - | chr4.1:53835461-53835480 | None:intergenic | 45.0% |
| ! | CAGACCTGGTACTGAATTCT+GGG | + | chr4.1:53836617-53836636 | MS.gene95759:intron | 45.0% |
| ! | CTCTGGGAGTGTATTCTTGA+GGG | + | chr4.1:53835002-53835021 | MS.gene95759:intron | 45.0% |
| ! | GTGATGCTGTTGGTAGACTT+AGG | + | chr4.1:53833556-53833575 | MS.gene95759:intron | 45.0% |
| ! | TCATTTGTCAGCAGAGGTAC+CGG | - | chr4.1:53834687-53834706 | None:intergenic | 45.0% |
| ! | TCTGGGAGTGTATTCTTGAG+GGG | + | chr4.1:53835003-53835022 | MS.gene95759:intron | 45.0% |
| ! | TGTGATGATGAAGAAGAGCG+AGG | + | chr4.1:53837421-53837440 | MS.gene95759:CDS | 45.0% |
| !! | AATGGAGAATGGGTTGGAGA+AGG | + | chr4.1:53833425-53833444 | MS.gene95759:CDS | 45.0% |
| !! | AATGGGTTGGAGAAGGGAAA+TGG | + | chr4.1:53833432-53833451 | MS.gene95759:CDS | 45.0% |
| !! | ATGGAGAATGGGTTGGAGAA+GGG | + | chr4.1:53833426-53833445 | MS.gene95759:CDS | 45.0% |
| !! | ATGGGTTGGAGAAGGGAAAT+GGG | + | chr4.1:53833433-53833452 | MS.gene95759:CDS | 45.0% |
| AATCCGCCATAATGCTGCCA+TGG | - | chr4.1:53834460-53834479 | None:intergenic | 50.0% | |
| AGGAGAGAGAGAGAGAGAGA+GGG | - | chr4.1:53833642-53833661 | None:intergenic | 50.0% | |
| ATAGATGTTGCGGCTTCTGG+CGG | - | chr4.1:53834492-53834511 | None:intergenic | 50.0% | |
| ATTCCGCCATGGCAGCATTA+TGG | + | chr4.1:53834451-53834470 | MS.gene95759:intron | 50.0% | |
| CAAGTGGCGAAAGCTGCTAA+TGG | + | chr4.1:53835494-53835513 | MS.gene95759:CDS | 50.0% | |
| CAGCAGCATCATGGTGAATG+CGG | - | chr4.1:53835625-53835644 | None:intergenic | 50.0% | |
| CATCTGACACAGCAGCATCA+TGG | - | chr4.1:53835634-53835653 | None:intergenic | 50.0% | |
| CCAGAATTCAGTACCAGGTC+TGG | - | chr4.1:53836619-53836638 | None:intergenic | 50.0% | |
| CCCTGTGAGCTTAACTCAGT+TGG | + | chr4.1:53837125-53837144 | MS.gene95759:intron | 50.0% | |
| CCTCAAGAATACACTCCCAG+AGG | - | chr4.1:53835004-53835023 | None:intergenic | 50.0% | |
| CTCAGAGATCCCAAAATGGC+CGG | + | chr4.1:53835519-53835538 | MS.gene95759:CDS | 50.0% | |
| CTTGACACCATCCTGCAATG+TGG | - | chr4.1:53834755-53834774 | None:intergenic | 50.0% | |
| GCATCACTCACCTTACAAGC+TGG | - | chr4.1:53836041-53836060 | None:intergenic | 50.0% | |
| GGCTCTCAGAGATCCCAAAA+TGG | + | chr4.1:53835515-53835534 | MS.gene95759:CDS | 50.0% | |
| TCAGAGATCCCAAAATGGCC+GGG | + | chr4.1:53835520-53835539 | MS.gene95759:CDS | 50.0% | |
| TGCACTCCTGGTTGTGATGA+AGG | + | chr4.1:53833615-53833634 | MS.gene95759:intron | 50.0% | |
| ! | ACTCTGGAAGAGAGACAGCA+AGG | + | chr4.1:53835390-53835409 | MS.gene95759:CDS | 50.0% |
| ! | CACATTGCAGGATGGTGTCA+AGG | + | chr4.1:53834753-53834772 | MS.gene95759:intron | 50.0% |
| ! | CCAGACCTGGTACTGAATTC+TGG | + | chr4.1:53836616-53836635 | MS.gene95759:intron | 50.0% |
| ! | CCTCTGGGAGTGTATTCTTG+AGG | + | chr4.1:53835001-53835020 | MS.gene95759:intron | 50.0% |
| !!! | TATGGCGGATTTTTGGCCTG+CGG | + | chr4.1:53834557-53834576 | MS.gene95759:intron | 50.0% |
| AGATCCCAAAATGGCCGGGT+TGG | + | chr4.1:53835524-53835543 | MS.gene95759:CDS | 55.0% | |
| GAGGAGAGAGAGAGAGAGAG+AGG | - | chr4.1:53833643-53833662 | None:intergenic | 55.0% | |
| GAGGGACCTTCATCACAACC+AGG | - | chr4.1:53833624-53833643 | None:intergenic | 55.0% | |
| GGCCGATCACCAACATGCAA+AGG | + | chr4.1:53837469-53837488 | MS.gene95759:CDS | 55.0% | |
| !! | GTGACCAACCCGGCCATTTT+GGG | - | chr4.1:53835531-53835550 | None:intergenic | 55.0% |
| ACTCATCGCGGTGACCAACC+CGG | - | chr4.1:53835541-53835560 | None:intergenic | 60.0% | |
| CCGCCATAATGCTGCCATGG+CGG | - | chr4.1:53834457-53834476 | None:intergenic | 60.0% | |
| CCGCCATGGCAGCATTATGG+CGG | + | chr4.1:53834454-53834473 | MS.gene95759:intron | 60.0% | |
| CGACACTGACACGACGACTC+TGG | - | chr4.1:53833822-53833841 | None:intergenic | 60.0% | |
| ! | GGTGACCAACCCGGCCATTT+TGG | - | chr4.1:53835532-53835551 | None:intergenic | 60.0% |
| ! | TATCAACGATGGCTGGCCGC+AGG | - | chr4.1:53834576-53834595 | None:intergenic | 60.0% |
| AAGGTCCGGGGTTCGAACCC+CGG | + | chr4.1:53837171-53837190 | MS.gene95759:intron | 65.0% | |
| GGTGTCCGGGGTTCGAACCC+CGG | - | chr4.1:53837179-53837198 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 53833417 | 53837588 | 53833417 | ID=MS.gene95759 |
| chr4.1 | mRNA | 53833417 | 53837588 | 53833417 | ID=MS.gene95759.t1;Parent=MS.gene95759 |
| chr4.1 | exon | 53833417 | 53833567 | 53833417 | ID=MS.gene95759.t1.exon1;Parent=MS.gene95759.t1 |
| chr4.1 | CDS | 53833417 | 53833567 | 53833417 | ID=cds.MS.gene95759.t1;Parent=MS.gene95759.t1 |
| chr4.1 | exon | 53834652 | 53834686 | 53834652 | ID=MS.gene95759.t1.exon2;Parent=MS.gene95759.t1 |
| chr4.1 | CDS | 53834652 | 53834686 | 53834652 | ID=cds.MS.gene95759.t1;Parent=MS.gene95759.t1 |
| chr4.1 | exon | 53834763 | 53834796 | 53834763 | ID=MS.gene95759.t1.exon3;Parent=MS.gene95759.t1 |
| chr4.1 | CDS | 53834763 | 53834796 | 53834763 | ID=cds.MS.gene95759.t1;Parent=MS.gene95759.t1 |
| chr4.1 | exon | 53835360 | 53835687 | 53835360 | ID=MS.gene95759.t1.exon4;Parent=MS.gene95759.t1 |
| chr4.1 | CDS | 53835360 | 53835687 | 53835360 | ID=cds.MS.gene95759.t1;Parent=MS.gene95759.t1 |
| chr4.1 | exon | 53837414 | 53837588 | 53837414 | ID=MS.gene95759.t1.exon5;Parent=MS.gene95759.t1 |
| chr4.1 | CDS | 53837414 | 53837588 | 53837414 | ID=cds.MS.gene95759.t1;Parent=MS.gene95759.t1 |
| Gene Sequence |
| Protein sequence |
